FFCP PHASE1:Hg19::chr19:38423243..38423265,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:38423243..38423265,+
|short_description=p4@SIPA1L3
|description=CAGE_peak_4_at_SIPA1L3_5end
|association_with_transcript=259bp_to_ENST00000476317_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23094 | |EntrezGene=23094 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23801 | |HGNC=23801 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=259bp_to_ENST00000476317_5end | |||
|cluster_id=chr19:38423243..38423265,+ | |||
|coexpression_cluster_id=C3782 | |||
|description=CAGE_peak_4_at_SIPA1L3_5end | |||
|id=chr19:38423243..38423265,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.44e-20!254;CL:0002076!5.83e-12!43;CL:0000223!8.19e-11!59;CL:1000497!2.15e-08!18;CL:0002518!2.15e-08!18;CL:1000507!7.26e-08!12;CL:1000494!7.26e-08!12;CL:0002251!1.18e-07!21;CL:0000077!2.46e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:1000507;4.71e-13;10!CL:1000494;4.71e-13;10!CL:1000497;4.75e-12;17!CL:0002518;4.75e-12;17!CL:1000449;2.39e-08;15!CL:0002076;5.19e-08;42!CL:0001014;1.53e-07;2!CL:0001016;1.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.57e-13,10;CL:1000494,2.57e-13,10;CL:0000066,6.74e-13,253;CL:1000497,3.32e-12,17;CL:0002518,3.32e-12,17;CL:1000449,1.63e-08,15;CL:0000223,2.64e-08,58;CL:0002076,3.31e-08,42;CL:0001014,1.44e-07,2;CL:0001016,1.44e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.59e-07;30 | |||
|ontology_enrichment_disease=DOID:305!7.94e-19!106;DOID:0050687!1.06e-11!143;DOID:299!1.09e-10!25;DOID:162!2.76e-07!235;DOID:14566!8.71e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:299;1.21e-11;25!DOID:4468;2.81e-07;2!DOID:4929;6.57e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.55e-20,106;DOID:0050687,1.07e-12,143;DOID:299,1.23e-11,25;DOID:162,1.37e-07,235;DOID:14566,2.95e-07,239;DOID:4468,3.09e-07,2;DOID:4929,8.71e-07,2;DOID:3493,9.23e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.45e-19!169;UBERON:0000925!6.45e-19!169;UBERON:0006595!6.45e-19!169;UBERON:0001007!5.04e-18!155;UBERON:0001555!5.04e-18!155;UBERON:0007026!5.04e-18!155;UBERON:0004921!1.38e-15!129;UBERON:0004185!1.38e-15!129;UBERON:0000466!1.03e-14!126;UBERON:0000464!1.56e-14!104;UBERON:0005177!1.50e-13!107;UBERON:0005409!1.78e-13!35;UBERON:0000077!7.44e-12!130;UBERON:0000058!9.28e-12!26;UBERON:0000160!9.95e-12!27;UBERON:0002553!3.43e-11!70;UBERON:0005911!1.98e-10!82;UBERON:0006554!6.99e-10!44;UBERON:0001008!1.68e-09!45;UBERON:0002108!2.80e-09!14;UBERON:0003064!4.65e-09!37;UBERON:0003886!4.94e-09!63;UBERON:0002113!1.27e-08!27;UBERON:0003918!1.27e-08!27;UBERON:0005095!1.27e-08!27;UBERON:0007687!1.27e-08!27;UBERON:0001041!1.33e-08!98;UBERON:0005172!3.82e-08!55;UBERON:0005173!3.82e-08!55;UBERON:0000344!5.33e-08!12;UBERON:0000080!6.64e-08!18;UBERON:0002120!6.64e-08!18;UBERON:0004875!6.64e-08!18;UBERON:0005721!6.64e-08!18;UBERON:0005754!6.64e-08!18;UBERON:0007297!6.64e-08!18;UBERON:0009773!7.26e-08!12;UBERON:0001231!7.26e-08!12;UBERON:0004810!7.26e-08!12;UBERON:0002075!7.29e-08!18;UBERON:0005153!8.09e-08!37;UBERON:0000489!1.42e-07!32;UBERON:0002294!2.00e-07!7;UBERON:0001173!2.00e-07!7;UBERON:0004912!2.00e-07!7;UBERON:0003887!2.91e-07!21;UBERON:0009569!3.01e-07!113;UBERON:0006555!3.15e-07!17;UBERON:0005103!3.15e-07!17;UBERON:0000083!3.15e-07!17;UBERON:0009201!3.15e-07!17;UBERON:0004819!3.15e-07!17;UBERON:0006553!3.15e-07!17;UBERON:0003074!3.15e-07!17;UBERON:0003060!3.15e-07!17;UBERON:0001004!3.38e-07!72;UBERON:0000481!3.66e-07!347;UBERON:0003104!4.27e-07!238;UBERON:0009142!4.27e-07!238;UBERON:0002114!4.79e-07!12;UBERON:0004876!8.82e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.32e-16;22!UBERON:0002294;2.92e-15;7!UBERON:0001173;2.92e-15;7!UBERON:0000160;3.56e-15;17!UBERON:0004211;4.71e-13;10!UBERON:0009773;4.71e-13;10!UBERON:0001231;4.71e-13;10!UBERON:0004810;4.71e-13;10!UBERON:0002113;5.87e-12;24!UBERON:0011143;5.87e-12;24!UBERON:0000489;2.47e-11;29!UBERON:0006554;7.22e-11;30!UBERON:0001008;7.22e-11;30!UBERON:0002075;8.38e-11;18!UBERON:0002108;1.10e-10;4!UBERON:0004921;1.43e-10;33!UBERON:0002110;1.96e-09;3!UBERON:0006555;2.39e-08;15!UBERON:0004819;2.39e-08;15!UBERON:0001285;2.39e-08;15!UBERON:0007684;2.39e-08;15!UBERON:0005172;5.86e-08;52!UBERON:0005173;5.86e-08;52!UBERON:0002394;9.60e-08;4!UBERON:0003928;9.60e-08;4!UBERON:0005177;1.41e-07;99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.84e-17,101;UBERON:0000160,3.33e-15,17;UBERON:0005409,4.68e-14,25;UBERON:0004810,2.57e-13,10;UBERON:0001007,1.02e-12,145;UBERON:0001555,1.02e-12,145;UBERON:0007026,1.02e-12,145;UBERON:0002294,1.04e-11,9;UBERON:0001173,1.04e-11,9;UBERON:0004912,1.04e-11,9;UBERON:0004119,1.16e-11,160;UBERON:0000925,1.16e-11,160;UBERON:0006595,1.16e-11,160;UBERON:0002113,4.50e-11,26;UBERON:0003918,4.50e-11,26;UBERON:0011143,4.50e-11,26;UBERON:0005095,4.50e-11,26;UBERON:0007687,4.50e-11,26;UBERON:0002075,6.87e-11,18;UBERON:0002108,1.12e-10,4;UBERON:0000489,1.47e-10,31;UBERON:0004921,1.54e-10,118;UBERON:0005172,1.10e-09,54;UBERON:0005173,1.10e-09,54;UBERON:0002110,1.92e-09,3;UBERON:0006242,1.92e-09,3;UBERON:0009569,2.69e-09,112;UBERON:0002100,3.44e-09,199;UBERON:0005911,7.15e-09,82;UBERON:0006554,1.49e-08,47;UBERON:0004211,1.63e-08,15;UBERON:0009773,1.63e-08,15;UBERON:0001231,1.63e-08,15;UBERON:0001285,1.63e-08,15;UBERON:0007684,1.63e-08,15;UBERON:0004208,1.63e-08,15;UBERON:0002417,2.41e-08,60;UBERON:0000916,2.41e-08,60;UBERON:0001008,2.60e-08,48;UBERON:0006555,6.46e-08,16;UBERON:0004819,6.46e-08,16 | |||
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| ||
|short_description=p4@SIPA1L3 | |||
}} | }} |
Latest revision as of 18:38, 17 September 2015
Short description: | p4@SIPA1L3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SIPA1L3_5end |
Coexpression cluster: | C3782_small_papillotubular_smallcell_Intestinal_immature_bile_colon |
Association with transcript: | 259bp_to_ENST00000476317_5end |
EntrezGene: | SIPA1L3 |
HGNC: | 23801 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.57e-13 | 10 |
nephron tubule epithelial cell | 2.57e-13 | 10 |
epithelial cell | 6.74e-13 | 253 |
kidney cell | 3.32e-12 | 17 |
kidney epithelial cell | 3.32e-12 | 17 |
epithelial cell of nephron | 1.63e-08 | 15 |
endodermal cell | 2.64e-08 | 58 |
endo-epithelial cell | 3.31e-08 | 42 |
CD1a-positive Langerhans cell | 1.44e-07 | 2 |
immature CD1a-positive Langerhans cell | 1.44e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.55e-20 | 106 |
cell type cancer | 1.07e-12 | 143 |
adenocarcinoma | 1.23e-11 | 25 |
cancer | 1.37e-07 | 235 |
disease of cellular proliferation | 2.95e-07 | 239 |
clear cell adenocarcinoma | 3.09e-07 | 2 |
tubular adenocarcinoma | 8.71e-07 | 2 |
signet ring cell adenocarcinoma | 9.23e-07 | 2 |