FFCP PHASE1:Hg19::chr5:153857800..153857812,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9421 | |EntrezGene=9421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4807 | |HGNC=4807 | ||
|TSSclassifier=strong | |||
|UniProt=O96004 | |UniProt=O96004 | ||
|association_with_transcript=11bp_to_ENST00000231121,NM_004821,uc003lvn.2_5end | |association_with_transcript=11bp_to_ENST00000231121,NM_004821,uc003lvn.2_5end | ||
|cluster_id=chr5:153857800..153857812,- | |||
|coexpression_cluster_id=C360 | |coexpression_cluster_id=C360 | ||
|description=CAGE_peak_2_at_HAND1_5end | |description=CAGE_peak_2_at_HAND1_5end | ||
|id=chr5:153857800..153857812,- | |id=chr5:153857800..153857812,- | ||
|ontology_enrichment_celltype=CL:0000349!5.80e-11!3;CL:0002577!5.80e-11!3;CL:0000039!9.15e-10!7;CL:0000586!9.15e-10!7;CL:0002536!1.08e-07!2 | |ontology_enrichment_celltype=CL:0000349!5.80e-11!3;CL:0002577!5.80e-11!3;CL:0000039!9.15e-10!7;CL:0000586!9.15e-10!7;CL:0002536!1.08e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.44e-28;19!CL:0002577;2.79e-18;3!CL:0002536;1.81e-12;2!CL:0002537;5.12e-11;5!CL:0000333;1.13e-10;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.45e-28,19;CL:0002577,2.80e-18,3;CL:0002536,1.81e-12,2;CL:0002537,5.12e-11,5 | |||
|ontology_enrichment_development_v019=UBERON:0010226;5.73e-07;1!UBERON:0004140;6.24e-07;1 | |||
|ontology_enrichment_disease=DOID:3095!4.79e-14!22;DOID:2994!4.79e-14!22;DOID:169!1.66e-08!6;DOID:114!1.49e-07!2 | |ontology_enrichment_disease=DOID:3095!4.79e-14!22;DOID:2994!4.79e-14!22;DOID:169!1.66e-08!6;DOID:114!1.49e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:114;3.17e-12;2!DOID:169;5.73e-09;6!DOID:3095;1.90e-08;22!DOID:2994;1.90e-08;22!DOID:178;6.98e-07;1!DOID:326;6.98e-07;1!DOID:3978;6.98e-07;1!DOID:3394;6.98e-07;1!DOID:5844;6.98e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.17e-12,2;DOID:169,5.58e-09,6;DOID:3095,1.90e-08,22;DOID:2994,1.90e-08,22;DOID:178,6.99e-07,1;DOID:326,6.99e-07,1;DOID:3978,6.99e-07,1;DOID:3394,6.99e-07,1;DOID:5844,6.99e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.66e-26!14;UBERON:0000158!5.66e-26!14;UBERON:0000478!1.19e-19!24;UBERON:0003124!6.47e-16!7;UBERON:0001987!2.15e-13!4;UBERON:0004340!2.15e-13!4;UBERON:0000305!7.01e-12!7;UBERON:0004871!2.46e-10!8;UBERON:0000013!3.25e-10!5;UBERON:0002410!3.25e-10!5;UBERON:0004923!1.22e-07!57;UBERON:0000059!8.27e-07!11 | |ontology_enrichment_uberon=UBERON:0005631!5.66e-26!14;UBERON:0000158!5.66e-26!14;UBERON:0000478!1.19e-19!24;UBERON:0003124!6.47e-16!7;UBERON:0001987!2.15e-13!4;UBERON:0004340!2.15e-13!4;UBERON:0000305!7.01e-12!7;UBERON:0004871!2.46e-10!8;UBERON:0000013!3.25e-10!5;UBERON:0002410!3.25e-10!5;UBERON:0004923!1.22e-07!57;UBERON:0000059!8.27e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.32e-22;24!UBERON:0000305;1.84e-20;7!UBERON:0005631;4.35e-20;10!UBERON:0000158;4.35e-20;10!UBERON:0001987;7.74e-14;4!UBERON:0000013;1.13e-10;5!UBERON:0002410;1.13e-10;5!UBERON:0005409;2.32e-10;22!UBERON:0000160;5.00e-10;17!UBERON:0007100;6.67e-10;25!UBERON:0003978;6.50e-08;3!UBERON:0000946;6.50e-08;3!UBERON:0000059;6.99e-08;11!UBERON:0002084;5.73e-07;1!UBERON:0002082;5.73e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,8.17e-32,14;UBERON:0000158,8.17e-32,14;UBERON:0000478,6.33e-22,24;UBERON:0000305,1.84e-20,7;UBERON:0004871,7.07e-18,8;UBERON:0001987,7.75e-14,4;UBERON:0004340,7.75e-14,4;UBERON:0003124,2.06e-13,7;UBERON:0000013,1.10e-10,5;UBERON:0002410,1.10e-10,5;UBERON:0000160,3.76e-10,17;UBERON:0004923,8.46e-10,66;UBERON:0005409,3.69e-09,25;UBERON:0007100,4.38e-09,27;UBERON:0000059,5.29e-08,11;UBERON:0003978,7.23e-08,3;UBERON:0009751,7.23e-08,3;UBERON:0000946,7.23e-08,3;UBERON:0002523,7.23e-08,3;UBERON:0005983,7.23e-08,3;UBERON:0002165,7.23e-08,3;UBERON:0002062,7.23e-08,3;UBERON:0007280,7.23e-08,3;UBERON:0002084,5.57e-07,1;UBERON:0002082,5.57e-07,1;UBERON:0010226,5.57e-07,1 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,18.7859580031948,11.605747042052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39432731443422,0.310983165046111,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62786481617433,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,30.9190122875185,28.2940247167845,34.4724934395836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5183915079499,24.648068509109,29.180266699427,0,0,0,0,0.211125408127993,0,1.93398740871803,0,0,0,0,0,0,0,2.46608514092334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0,0,0.23056390438806,0.179515288819544,0.108647371922008,3.19001159731919,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,3.98059040265026,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,1.39866726707491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11712960508902,1.83328339209347,0,4.19325901047881,10.7306512034143,8.25734392534928,7.79328280846025,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0.415440338029185,0,0,0,0,0,0,0,0,0,0,8.60719561475061,2.28841683889275,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.77840167909354,2.58779547352036,0.157265941855896,25.3366360605472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.354809480650555,0,0,0,0,0,0,1.41287567130925,0,1.96190514319652,0,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23478652972711,1.96703604453562,0,3.92237314806249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26217249754548,0,0,0,0,0,0,0,1.96678029534652,14.3169306142924,0.407955318967927,0,1.10273879441814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | ||
|short_description=p2@HAND1 | |short_description=p2@HAND1 | ||
}} | }} |
Latest revision as of 11:58, 16 September 2015
Short description: | p2@HAND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HAND1_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 11bp_to_ENST00000231121, NM_004821, uc003lvn.2_5end |
EntrezGene: | HAND1 |
HGNC: | 4807 |
UniProt: | O96004 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.45e-28 | 19 |
placental epithelial cell | 2.80e-18 | 3 |
amniotic epithelial cell | 1.81e-12 | 2 |
amnion mesenchymal stem cell | 5.12e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 8.17e-32 | 14 |
membranous layer | 8.17e-32 | 14 |
extraembryonic structure | 6.33e-22 | 24 |
amnion | 1.84e-20 | 7 |
somatic layer of lateral plate mesoderm | 7.07e-18 | 8 |
placenta | 7.75e-14 | 4 |
allantois | 7.75e-14 | 4 |
chorion | 2.06e-13 | 7 |
sympathetic nervous system | 1.10e-10 | 5 |
autonomic nervous system | 1.10e-10 | 5 |
intestine | 3.76e-10 | 17 |
organ component layer | 8.46e-10 | 66 |
gastrointestinal system | 3.69e-09 | 25 |
primary circulatory organ | 4.38e-09 | 27 |
large intestine | 5.29e-08 | 11 |
valve | 7.23e-08 | 3 |
cardiac mesenchyme | 7.23e-08 | 3 |
cardial valve | 7.23e-08 | 3 |
tunica intima | 7.23e-08 | 3 |
heart layer | 7.23e-08 | 3 |
endocardium | 7.23e-08 | 3 |
endocardial cushion | 7.23e-08 | 3 |
presumptive endocardium | 7.23e-08 | 3 |
heart left ventricle | 5.57e-07 | 1 |
cardiac ventricle | 5.57e-07 | 1 |
future cardiac ventricle | 5.57e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.17e-12 | 2 |
neuroendocrine tumor | 5.58e-09 | 6 |
germ cell and embryonal cancer | 1.90e-08 | 22 |
germ cell cancer | 1.90e-08 | 22 |
vascular disease | 6.99e-07 | 1 |
ischemia | 6.99e-07 | 1 |
extrinsic cardiomyopathy | 6.99e-07 | 1 |
myocardial ischemia | 6.99e-07 | 1 |
myocardial infarction | 6.99e-07 | 1 |