FFCP PHASE1:Hg19::chr3:98705040..98705081,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:98705040..98705081,- | |||
|coexpression_cluster_id=C369 | |coexpression_cluster_id=C369 | ||
|description=CAGE_peak_at_chr3:98705040..98705081,- | |description=CAGE_peak_at_chr3:98705040..98705081,- | ||
|id=chr3:98705040..98705081,- | |id=chr3:98705040..98705081,- | ||
|ontology_enrichment_celltype=CL:0000220!2.48e-19!246;CL:0002321!6.31e-19!248;CL:0000066!1.13e-14!254;CL:0000222!4.98e-11!119;CL:1000507!1.09e-10!12;CL:1000494!1.09e-10!12;CL:0000075!3.18e-10!27;CL:0000548!5.62e-09!679;CL:0000004!5.62e-09!679;CL:0000255!5.62e-09!679;CL:0000012!1.02e-08!682;CL:1000497!1.46e-08!18;CL:0002518!1.46e-08!18;CL:1000449!2.40e-08!16;CL:0000183!3.65e-08!59;CL:0002681!2.52e-07!13;CL:0002584!2.52e-07!13;CL:0000003!5.89e-07!722 | |ontology_enrichment_celltype=CL:0000220!2.48e-19!246;CL:0002321!6.31e-19!248;CL:0000066!1.13e-14!254;CL:0000222!4.98e-11!119;CL:1000507!1.09e-10!12;CL:1000494!1.09e-10!12;CL:0000075!3.18e-10!27;CL:0000548!5.62e-09!679;CL:0000004!5.62e-09!679;CL:0000255!5.62e-09!679;CL:0000012!1.02e-08!682;CL:1000497!1.46e-08!18;CL:0002518!1.46e-08!18;CL:1000449!2.40e-08!16;CL:0000183!3.65e-08!59;CL:0002681!2.52e-07!13;CL:0002584!2.52e-07!13;CL:0000003!5.89e-07!722 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.83e-17;10!CL:1000494;1.83e-17;10!CL:0000075;5.01e-17;27!CL:1000497;8.60e-13;17!CL:0002518;8.60e-13;17!CL:0000064;1.26e-12;3!CL:0000067;1.26e-12;3!CL:0005012;1.26e-12;3!CL:0002304;1.26e-12;3!CL:1000449;2.75e-11;15!CL:0002681;1.57e-10;12!CL:0002584;1.57e-10;12!CL:0000149;2.61e-09;4!CL:0000306;5.10e-09;4!CL:0002222;5.10e-09;4!CL:0002224;5.10e-09;4!CL:0000147;7.47e-09;14!CL:0000650;1.13e-08;2!CL:1000500;1.13e-08;2!CL:1000618;1.13e-08;2!CL:1001318;1.13e-08;2!CL:0002173;1.13e-08;2!CL:0000710;3.41e-08;20!CL:0002077;3.05e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.06e-17,10;CL:1000494,2.06e-17,10;CL:0000075,5.30e-17,27;CL:1000497,9.50e-13,17;CL:0002518,9.50e-13,17;CL:0000064,1.24e-12,3;CL:0000067,1.24e-12,3;CL:0005012,1.24e-12,3;CL:0002304,1.24e-12,3;CL:0000066,1.90e-12,253;CL:1000449,2.96e-11,15;CL:0002681,1.70e-10,12;CL:0002584,1.70e-10,12;CL:0000149,2.51e-09,4;CL:0000306,4.46e-09,4;CL:0002222,4.46e-09,4;CL:0002224,4.46e-09,4;CL:0000147,8.15e-09,14;CL:0000650,1.15e-08,2;CL:1000500,1.15e-08,2;CL:1000618,1.15e-08,2;CL:1001318,1.15e-08,2;CL:0002173,1.15e-08,2;CL:0000710,3.70e-08,20;CL:0002077,4.07e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.11e-11!14;DOID:120!5.45e-10!27;DOID:193!6.73e-09!29 | |ontology_enrichment_disease=DOID:2394!1.11e-11!14;DOID:120!5.45e-10!27;DOID:193!6.73e-09!29 | ||
|ontology_enrichment_disease_v019=DOID:120;4.63e-09;27!DOID:4468;1.13e-08;2!DOID:193;2.52e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:120,4.66e-09,27;DOID:4468,1.11e-08,2;DOID:193,2.54e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0007625!5.94e-13!11;UBERON:0009773!1.09e-10!12;UBERON:0001231!1.09e-10!12;UBERON:0004810!1.09e-10!12;UBERON:0004211!2.40e-08!16;UBERON:0001285!2.40e-08!16;UBERON:0007684!2.40e-08!16;UBERON:0003220!2.40e-08!16;UBERON:0004208!2.40e-08!16;UBERON:0000019!5.26e-08!19;UBERON:0000047!5.26e-08!19;UBERON:0004088!5.26e-08!19;UBERON:0003072!5.26e-08!19;UBERON:0003071!5.26e-08!19;UBERON:0004128!5.26e-08!19;UBERON:0005256!5.68e-08!143;UBERON:0000119!6.24e-08!312;UBERON:0006555!1.21e-07!17;UBERON:0005103!1.21e-07!17;UBERON:0000083!1.21e-07!17;UBERON:0009201!1.21e-07!17;UBERON:0004819!1.21e-07!17;UBERON:0006553!1.21e-07!17;UBERON:0003074!1.21e-07!17;UBERON:0003060!1.21e-07!17;UBERON:0000483!1.45e-07!309;UBERON:0000970!2.09e-07!20;UBERON:0001225!2.52e-07!13;UBERON:0008987!2.52e-07!13;UBERON:0000080!5.06e-07!18;UBERON:0002120!5.06e-07!18;UBERON:0004875!5.06e-07!18;UBERON:0005721!5.06e-07!18;UBERON:0005754!5.06e-07!18;UBERON:0007297!5.06e-07!18;UBERON:0002104!7.19e-07!21;UBERON:0001456!7.19e-07!21;UBERON:0000020!9.66e-07!23 | |ontology_enrichment_uberon=UBERON:0007625!5.94e-13!11;UBERON:0009773!1.09e-10!12;UBERON:0001231!1.09e-10!12;UBERON:0004810!1.09e-10!12;UBERON:0004211!2.40e-08!16;UBERON:0001285!2.40e-08!16;UBERON:0007684!2.40e-08!16;UBERON:0003220!2.40e-08!16;UBERON:0004208!2.40e-08!16;UBERON:0000019!5.26e-08!19;UBERON:0000047!5.26e-08!19;UBERON:0004088!5.26e-08!19;UBERON:0003072!5.26e-08!19;UBERON:0003071!5.26e-08!19;UBERON:0004128!5.26e-08!19;UBERON:0005256!5.68e-08!143;UBERON:0000119!6.24e-08!312;UBERON:0006555!1.21e-07!17;UBERON:0005103!1.21e-07!17;UBERON:0000083!1.21e-07!17;UBERON:0009201!1.21e-07!17;UBERON:0004819!1.21e-07!17;UBERON:0006553!1.21e-07!17;UBERON:0003074!1.21e-07!17;UBERON:0003060!1.21e-07!17;UBERON:0000483!1.45e-07!309;UBERON:0000970!2.09e-07!20;UBERON:0001225!2.52e-07!13;UBERON:0008987!2.52e-07!13;UBERON:0000080!5.06e-07!18;UBERON:0002120!5.06e-07!18;UBERON:0004875!5.06e-07!18;UBERON:0005721!5.06e-07!18;UBERON:0005754!5.06e-07!18;UBERON:0007297!5.06e-07!18;UBERON:0002104!7.19e-07!21;UBERON:0001456!7.19e-07!21;UBERON:0000020!9.66e-07!23 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.71e-21;11!UBERON:0004211;1.83e-17;10!UBERON:0009773;1.83e-17;10!UBERON:0001231;1.83e-17;10!UBERON:0004810;1.83e-17;10!UBERON:0001778;1.26e-12;3!UBERON:0001775;1.26e-12;3!UBERON:0000019;1.04e-11;19!UBERON:0000047;1.04e-11;19!UBERON:0004088;1.04e-11;19!UBERON:0010230;1.04e-11;19!UBERON:0006555;2.75e-11;15!UBERON:0004819;2.75e-11;15!UBERON:0001285;2.75e-11;15!UBERON:0007684;2.75e-11;15!UBERON:0000970;4.72e-11;20!UBERON:0002113;8.14e-11;24!UBERON:0011143;8.14e-11;24!UBERON:0001225;1.57e-10;12!UBERON:0008987;1.57e-10;12!UBERON:0002104;1.86e-10;21!UBERON:0001456;1.86e-10;21!UBERON:0006554;3.35e-10;30!UBERON:0001008;3.35e-10;30!UBERON:0010371;1.08e-09;31!UBERON:0000488;1.46e-09;4!UBERON:0000020;2.01e-09;23!UBERON:0001801;2.47e-09;14!UBERON:0010077;5.10e-09;4!UBERON:0005389;5.10e-09;4!UBERON:0000484;5.10e-09;4!UBERON:0000965;5.10e-09;4!UBERON:0001803;5.10e-09;4!UBERON:0001032;5.69e-09;24!UBERON:0004456;5.69e-09;24!UBERON:0003567;1.13e-08;2!UBERON:0003838;1.13e-08;2!UBERON:0003586;1.13e-08;2!UBERON:0005169;1.13e-08;2!UBERON:0002321;1.13e-08;2!UBERON:0005215;1.13e-08;2!UBERON:0002303;1.13e-08;2!UBERON:0002319;1.13e-08;2!UBERON:0000489;1.16e-08;29!UBERON:0001851;2.77e-08;15!UBERON:0000353;2.77e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.26e-21,11;UBERON:0004810,2.06e-17,10;UBERON:0001778,1.24e-12,3;UBERON:0001775,1.24e-12,3;UBERON:0004211,2.96e-11,15;UBERON:0009773,2.96e-11,15;UBERON:0001231,2.96e-11,15;UBERON:0001285,2.96e-11,15;UBERON:0007684,2.96e-11,15;UBERON:0004208,2.96e-11,15;UBERON:0000019,4.30e-11,20;UBERON:0000047,4.30e-11,20;UBERON:0010312,4.30e-11,20;UBERON:0004088,4.30e-11,20;UBERON:0010230,4.30e-11,20;UBERON:0003072,4.30e-11,20;UBERON:0004128,4.30e-11,20;UBERON:0003071,4.30e-11,20;UBERON:0001225,1.70e-10,12;UBERON:0008987,1.70e-10,12;UBERON:0000970,1.70e-10,21;UBERON:0002104,1.70e-10,21;UBERON:0006555,1.74e-10,16;UBERON:0004819,1.74e-10,16;UBERON:0001456,5.93e-10,22;UBERON:0002113,8.96e-10,26;UBERON:0003918,8.96e-10,26;UBERON:0011143,8.96e-10,26;UBERON:0005095,8.96e-10,26;UBERON:0007687,8.96e-10,26;UBERON:0000488,1.44e-09,4;UBERON:0001801,2.28e-09,14;UBERON:0010077,4.46e-09,4;UBERON:0005389,4.46e-09,4;UBERON:0000484,4.46e-09,4;UBERON:0002546,4.46e-09,4;UBERON:0000965,4.46e-09,4;UBERON:0001803,4.46e-09,4;UBERON:0003073,4.46e-09,4;UBERON:0005426,4.46e-09,4;UBERON:0000020,5.27e-09,24;UBERON:0001032,5.27e-09,24;UBERON:0004456,5.27e-09,24;UBERON:0003567,1.15e-08,2;UBERON:0003838,1.15e-08,2;UBERON:0003586,1.15e-08,2;UBERON:0005169,1.15e-08,2;UBERON:0002321,1.15e-08,2;UBERON:0005215,1.15e-08,2;UBERON:0002303,1.15e-08,2;UBERON:0002319,1.15e-08,2;UBERON:0001851,2.95e-08,15;UBERON:0000353,2.95e-08,15;UBERON:0000489,6.24e-08,31;UBERON:0000033,6.09e-07,56 | |||
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| ||
|short_description=p@chr3:98705040..98705081,- | |short_description=p@chr3:98705040..98705081,- | ||
}} | }} |
Latest revision as of 00:10, 30 July 2015
Short description: | p@chr3:98705040..98705081, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98705040..98705081, - |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.06e-17 | 10 |
nephron tubule epithelial cell | 2.06e-17 | 10 |
columnar/cuboidal epithelial cell | 5.30e-17 | 27 |
kidney cell | 9.50e-13 | 17 |
kidney epithelial cell | 9.50e-13 | 17 |
ciliated cell | 1.24e-12 | 3 |
ciliated epithelial cell | 1.24e-12 | 3 |
multi-ciliated epithelial cell | 1.24e-12 | 3 |
non-pigmented ciliary epithelial cell | 1.24e-12 | 3 |
epithelial cell | 1.90e-12 | 253 |
epithelial cell of nephron | 2.96e-11 | 15 |
kidney cortical cell | 1.70e-10 | 12 |
renal cortical epithelial cell | 1.70e-10 | 12 |
visual pigment cell | 2.51e-09 | 4 |
crystallin accumulating cell | 4.46e-09 | 4 |
vertebrate lens cell | 4.46e-09 | 4 |
lens epithelial cell | 4.46e-09 | 4 |
pigment cell | 8.15e-09 | 14 |
mesangial cell | 1.15e-08 | 2 |
kidney interstitial cell | 1.15e-08 | 2 |
juxtaglomerular complex cell | 1.15e-08 | 2 |
renal interstitial pericyte | 1.15e-08 | 2 |
extraglomerular mesangial cell | 1.15e-08 | 2 |
neurecto-epithelial cell | 3.70e-08 | 20 |
ecto-epithelial cell | 4.07e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 4.66e-09 | 27 |
clear cell adenocarcinoma | 1.11e-08 | 2 |
reproductive organ cancer | 2.54e-08 | 29 |