UBERON:0003071
From FANTOM5_SSTAR
Name: | eye primordium | |
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Namespace: | FANTOM | |
Definition: | "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570] | |
Xrefs: |
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Synonyms: |
"eye anlage" RELATED [XAO:0000227] "eye field" RELATED [] "eye placode" EXACT [OBOL:automatic] "occular primordium" EXACT [] "ocular primordium" EXACT [] "optic field" RELATED [] "optic placode" EXACT [GO:0046619] "optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm] "optic primordium" EXACT [] | |
Comments: | AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium | |
Alt_id: |
UBERON:0005060 UBERON:XAO_0000227-ZFA_0000570 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium) |
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develops_from: | UBERON:0003056(pre-chordal neural plate) |
part_of: | UBERON:0003056(pre-chordal neural plate) |
Children
develops from: | UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data