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UBERON:0003071

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Name:eye primordium
Namespace:FANTOM
Definition:"Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
Xrefs:
links:

AAO:0011038
EFO:0003541
EHDAA2:0004431
TAO:0000570
XAO:0000227
XAO:0004090

ZFA:0000570
Synonyms: "eye anlage" RELATED [XAO:0000227]
"eye field" RELATED []
"eye placode" EXACT [OBOL:automatic]
"occular primordium" EXACT []
"ocular primordium" EXACT []
"optic field" RELATED []
"optic placode" EXACT [GO:0046619]
"optic placode of camera-type eye" EXACT [GO:0046619, UBERON:cjm]
"optic primordium" EXACT []
Comments:AO notes: TODO - check that GO's optic placode is the same as ZFA's eye primordium; we may want to have separate term for ocular primordium precursor. XAO has both optic field and eye primordium
Alt_id: UBERON:0005060
UBERON:XAO_0000227-ZFA_0000570

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0003056(pre-chordal neural plate)
part_of:UBERON:0003056(pre-chordal neural plate)



Children

develops from:UBERON:0004128 (optic vesicle),UBERON:0010312 (immature eye)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003071 (eye primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data