FFCP PHASE1:Hg19::chr18:61442787..61442814,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:61442787..61442814,+
|short_description=p5@SERPINB7
|description=CAGE_peak_5_at_SERPINB7_5end
|association_with_transcript=132bp_to_ENST00000540675_5end
...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8710 | |EntrezGene=8710 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13902 | |HGNC=13902 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZC0 | |UniProt=F5GZC0 | ||
|association_with_transcript=132bp_to_ENST00000540675_5end | |||
|cluster_id=chr18:61442787..61442814,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_5_at_SERPINB7_5end | |||
|id=chr18:61442787..61442814,+ | |||
|ontology_enrichment_celltype=CL:0002620!9.94e-17!23;CL:0000057!4.69e-12!75;CL:0002537!3.43e-11!5;CL:0000055!4.56e-10!180;CL:0002334!1.75e-09!12;CL:0002615!3.99e-07!3;CL:0002579!4.16e-07!3;CL:0002580!4.24e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.51e-22;23!CL:0002537;5.24e-19;5!CL:0000349;6.12e-14;19!CL:0000135;1.08e-08;3!CL:0000388;1.08e-08;3!CL:0002579;1.28e-08;3!CL:0002615;1.51e-08;3!CL:0002541;1.57e-08;3!CL:0002580;1.97e-08;3!CL:0002334;9.77e-08;12!CL:0000511;9.77e-07;1!CL:0002625;9.77e-07;1!CL:0000216;9.77e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.90e-22,23;CL:0002537,6.02e-19,5;CL:0000057,1.92e-15,76;CL:0000349,6.91e-14,19;CL:0000135,1.10e-08,3;CL:0002615,1.10e-08,3;CL:0000388,1.10e-08,3;CL:0002579,1.28e-08,3;CL:0002541,1.60e-08,3;CL:0002580,2.42e-08,3;CL:0002334,1.08e-07,12;CL:0000134,9.24e-07,354;CL:0000511,9.51e-07,1;CL:0002625,9.51e-07,1;CL:0000216,9.51e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!8.89e-07!5;DOID:450!8.89e-07!5;DOID:66!8.89e-07!5;DOID:423!8.89e-07!5;DOID:0080000!8.89e-07!5;DOID:11722!8.89e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3371;2.90e-07;1!DOID:4549;2.90e-07;1!DOID:5861;2.90e-07;1!DOID:6496;2.90e-07;1!DOID:6193;9.77e-07;1!DOID:4235;9.77e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.82e-07,1;DOID:4549,2.82e-07,1;DOID:5861,2.82e-07,1;DOID:6496,2.82e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.18e-16!14;UBERON:0000158!2.18e-16!14;UBERON:0004923!1.62e-13!57;UBERON:0002097!2.76e-13!40;UBERON:0004871!1.31e-12!8;UBERON:0003688!1.39e-12!6;UBERON:0002358!1.39e-12!6;UBERON:0003684!1.39e-12!6;UBERON:0001178!1.39e-12!6;UBERON:0002199!1.71e-12!45;UBERON:0002416!1.71e-12!45;UBERON:0000305!7.99e-11!7;UBERON:0000478!2.26e-08!24;UBERON:0004457!1.90e-07!12;UBERON:0000042!1.90e-07!12;UBERON:0003124!2.18e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.25e-20;10!UBERON:0000158;2.25e-20;10!UBERON:0003688;1.75e-15;6!UBERON:0002358;1.75e-15;6!UBERON:0003684;1.75e-15;6!UBERON:0001178;1.75e-15;6!UBERON:0000305;1.28e-13;7!UBERON:0002097;1.40e-11;41!UBERON:0000478;7.59e-11;24!UBERON:0004457;2.31e-10;9!UBERON:0000042;2.31e-10;9!UBERON:0007846;1.08e-08;3!UBERON:0000043;1.08e-08;3!UBERON:0007845;1.08e-08;3!UBERON:0003124;1.57e-08;3!UBERON:0000920;1.57e-08;3!UBERON:0002199;2.97e-08;46!UBERON:0002416;2.97e-08;46!UBERON:0001136;9.77e-07;1!UBERON:0001343;9.77e-07;1!UBERON:0004910;9.77e-07;1!UBERON:0004813;9.77e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.65e-19,14;UBERON:0000158,3.65e-19,14;UBERON:0004871,7.49e-18,8;UBERON:0003688,1.28e-15,6;UBERON:0002358,1.28e-15,6;UBERON:0003684,1.28e-15,6;UBERON:0001178,1.28e-15,6;UBERON:0002097,2.65e-14,41;UBERON:0000305,1.42e-13,7;UBERON:0002199,1.59e-12,46;UBERON:0002416,1.59e-12,46;UBERON:0000478,8.34e-11,24;UBERON:0004923,5.01e-10,66;UBERON:0007846,1.10e-08,3;UBERON:0000043,1.10e-08,3;UBERON:0007845,1.10e-08,3;UBERON:0000920,1.60e-08,3;UBERON:0004457,7.41e-08,12;UBERON:0000042,7.41e-08,12;UBERON:0003124,1.05e-07,7;UBERON:0001136,9.51e-07,1;UBERON:0001343,9.51e-07,1;UBERON:0004910,9.51e-07,1;UBERON:0005154,9.51e-07,1;UBERON:0005295,9.51e-07,1;UBERON:0004813,9.51e-07,1;UBERON:0005297,9.51e-07,1;UBERON:0005294,9.51e-07,1;UBERON:0010141,9.51e-07,1;UBERON:0005891,9.51e-07,1 | |||
|phase1_expression=3.45188920614058,0.428201047781966,1.9733616573436,9.00659685178174,0.446961094427288,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97328599257748,0.213557388818567,1.69545520927649,0.900273288253207,0,2.83404594050192,3.35010341396862,1.35021065793013,3.41029518064195,0,1.38074847963449,0,4.9701342952326,1.81353776809752,1.69560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0.531876233169741,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.473107245101804,1.63997980989798,0,0,0,0,0.184369168541703,0.434418072340414,0,0,0,0,0,1.5156378572313,0,0.604780586659361,3.47350930946288,1.07423381301644,0.841980283299221,2.94720043288112,3.07024349440022,0.482561763430822,0,0.154209693802656,0,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,1.6068392984416,0.096670718292122,0.154048617114644,0,0.275673144969061,0.107420244868274,0.290033387828457,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,24.061996381584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.0326634933249,2.07875276582847,75.5615327164111,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.61303131276183,0,1.5991043280559,0,0,0,0,0,0,0,0,1.89898258075224,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522355239482415,0,1.37588825977293,0,0,0,0,5.82490436163902,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63293680054705,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701139929541673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0.686791410365586,1.34699795506368,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0195626881269,0,0.0644578879735772,0,0,0.705789743431384,0,0,0,0,0,0,0,0,5.57992527250127,0,2.59575937274273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0.672791175483681,0,0,0,0,0,0,0,0.0814032686109745,0.533636729388577,0,0,0,0,0,0,0,0 | |phase1_expression=3.45188920614058,0.428201047781966,1.9733616573436,9.00659685178174,0.446961094427288,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97328599257748,0.213557388818567,1.69545520927649,0.900273288253207,0,2.83404594050192,3.35010341396862,1.35021065793013,3.41029518064195,0,1.38074847963449,0,4.9701342952326,1.81353776809752,1.69560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0.531876233169741,2.08014873822732,0,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.473107245101804,1.63997980989798,0,0,0,0,0.184369168541703,0.434418072340414,0,0,0,0,0,1.5156378572313,0,0.604780586659361,3.47350930946288,1.07423381301644,0.841980283299221,2.94720043288112,3.07024349440022,0.482561763430822,0,0.154209693802656,0,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,1.6068392984416,0.096670718292122,0.154048617114644,0,0.275673144969061,0.107420244868274,0.290033387828457,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,24.061996381584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.0326634933249,2.07875276582847,75.5615327164111,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.61303131276183,0,1.5991043280559,0,0,0,0,0,0,0,0,1.89898258075224,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.522355239482415,0,1.37588825977293,0,0,0,0,5.82490436163902,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63293680054705,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.701139929541673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0.686791410365586,1.34699795506368,0,0,0,0,0,0,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.920529751259204,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0.111231401892069,0,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0195626881269,0,0.0644578879735772,0,0,0.705789743431384,0,0,0,0,0,0,0,0,5.57992527250127,0,2.59575937274273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0.672791175483681,0,0,0,0,0,0,0,0.0814032686109745,0.533636729388577,0,0,0,0,0,0,0,0 | ||
|short_description=p5@SERPINB7 | |||
}} | }} |
Latest revision as of 04:25, 20 September 2015
Short description: | p5@SERPINB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SERPINB7_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 132bp_to_ENST00000540675_5end |
EntrezGene: | SERPINB7 |
HGNC: | 13902 |
UniProt: | F5GZC0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.90e-22 | 23 |
amnion mesenchymal stem cell | 6.02e-19 | 5 |
fibroblast | 1.92e-15 | 76 |
extraembryonic cell | 6.91e-14 | 19 |
fibrocyte | 1.10e-08 | 3 |
adipocyte of omentum tissue | 1.10e-08 | 3 |
tendon cell | 1.10e-08 | 3 |
omentum preadipocyte | 1.28e-08 | 3 |
chorionic membrane mesenchymal stem cell | 1.60e-08 | 3 |
preadipocyte of the breast | 2.42e-08 | 3 |
preadipocyte | 1.08e-07 | 12 |
mesenchymal cell | 9.24e-07 | 354 |
androgen binding protein secreting cell | 9.51e-07 | 1 |
seminiferous tubule epithelial cell | 9.51e-07 | 1 |
Sertoli cell | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.65e-19 | 14 |
membranous layer | 3.65e-19 | 14 |
somatic layer of lateral plate mesoderm | 7.49e-18 | 8 |
omentum | 1.28e-15 | 6 |
peritoneum | 1.28e-15 | 6 |
abdominal cavity | 1.28e-15 | 6 |
visceral peritoneum | 1.28e-15 | 6 |
skin of body | 2.65e-14 | 41 |
amnion | 1.42e-13 | 7 |
integument | 1.59e-12 | 46 |
integumental system | 1.59e-12 | 46 |
extraembryonic structure | 8.34e-11 | 24 |
organ component layer | 5.01e-10 | 66 |
dense regular connective tissue | 1.10e-08 | 3 |
tendon | 1.10e-08 | 3 |
regular connective tissue | 1.10e-08 | 3 |
egg chorion | 1.60e-08 | 3 |
cavity lining | 7.41e-08 | 12 |
serous membrane | 7.41e-08 | 12 |
chorion | 1.05e-07 | 7 |
mesothelium | 9.51e-07 | 1 |
seminiferous tubule of testis | 9.51e-07 | 1 |
epithelium of male gonad | 9.51e-07 | 1 |
epithelial cord | 9.51e-07 | 1 |
sex cord | 9.51e-07 | 1 |
seminiferous tubule epithelium | 9.51e-07 | 1 |
testis sex cord | 9.51e-07 | 1 |
genital ridge | 9.51e-07 | 1 |
primitive sex cord of indifferent gonad | 9.51e-07 | 1 |
coelomic epithelium | 9.51e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.82e-07 | 1 |
extraosseous chondrosarcoma | 2.82e-07 | 1 |
myxoid chondrosarcoma | 2.82e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 2.82e-07 | 1 |