FFCP PHASE1:Hg19::chr3:190105935..190105966,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10686 | |EntrezGene=10686 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2037 | |HGNC=2037 | ||
|TSSclassifier=strong | |||
|UniProt=A0SDD8 | |UniProt=A0SDD8 | ||
|association_with_transcript=26bp_to_CU687000,DQ305102,HQ448426_5end | |association_with_transcript=26bp_to_CU687000,DQ305102,HQ448426_5end | ||
|cluster_id=chr3:190105935..190105966,+ | |||
|coexpression_cluster_id=C601 | |||
|description=CAGE_peak_1_at_CLDN16_5end | |description=CAGE_peak_1_at_CLDN16_5end | ||
|id=chr3:190105935..190105966,+ | |id=chr3:190105935..190105966,+ | ||
|ontology_enrichment_celltype=CL:1000507!3.41e-37!12;CL:1000494!3.41e-37!12;CL:1000449!1.60e-27!16;CL:1000497!2.68e-24!18;CL:0002518!2.68e-24!18;CL:0000239!2.59e-18!3;CL:1000615!2.59e-18!3;CL:0002306!2.59e-18!3;CL:0002149!9.47e-16!6;CL:0002255!9.47e-16!6;CL:0002681!1.71e-15!13;CL:0002584!1.71e-15!13;CL:0002581!5.69e-07!1;CL:0000313!6.02e-07!1 | |ontology_enrichment_celltype=CL:1000507!3.41e-37!12;CL:1000494!3.41e-37!12;CL:1000449!1.60e-27!16;CL:1000497!2.68e-24!18;CL:0002518!2.68e-24!18;CL:0000239!2.59e-18!3;CL:1000615!2.59e-18!3;CL:0002306!2.59e-18!3;CL:0002149!9.47e-16!6;CL:0002255!9.47e-16!6;CL:0002681!1.71e-15!13;CL:0002584!1.71e-15!13;CL:0002581!5.69e-07!1;CL:0000313!6.02e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.83e-50;10!CL:1000494;2.83e-50;10!CL:1000449;2.30e-33;15!CL:0000239;2.17e-32;3!CL:1000615;2.17e-32;3!CL:0002306;2.17e-32;3!CL:1000497;2.22e-29;17!CL:0002518;2.22e-29;17!CL:0002681;8.11e-22;12!CL:0002584;8.11e-22;12!CL:0002149;1.18e-16;6!CL:0002255;1.18e-16;6!CL:0002581;1.72e-11;1!CL:0000313;1.72e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.93e-50,10;CL:1000494,2.93e-50,10;CL:1000449,2.35e-33,15;CL:0000239,2.17e-32,3;CL:1000615,2.17e-32,3;CL:0002306,2.17e-32,3;CL:1000497,2.26e-29,17;CL:0002518,2.26e-29,17;CL:0002681,8.28e-22,12;CL:0002584,8.28e-22,12;CL:0002149,1.18e-16,6;CL:0002255,1.18e-16,6;CL:0002581,1.63e-11,1;CL:0000313,1.81e-11,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3001!9.47e-16!6;DOID:4468!5.89e-13!2;DOID:299!1.55e-10!25;DOID:120!1.10e-09!27;DOID:193!5.92e-09!29;DOID:2355!5.06e-07!1;DOID:2152!6.02e-07!1 | |ontology_enrichment_disease=DOID:3001!9.47e-16!6;DOID:4468!5.89e-13!2;DOID:299!1.55e-10!25;DOID:120!1.10e-09!27;DOID:193!5.92e-09!29;DOID:2355!5.06e-07!1;DOID:2152!6.02e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:4468;1.66e-22;2!DOID:3001;1.18e-16;6!DOID:299;6.47e-15;25!DOID:120;8.77e-14;27!DOID:193;8.31e-13;29!DOID:2355;1.32e-11;1!DOID:2152;1.72e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.66e-22,2;DOID:3001,1.18e-16,6;DOID:299,6.55e-15,25;DOID:120,8.87e-14,27;DOID:193,8.40e-13,29;DOID:2355,1.32e-11,1;DOID:2152,1.81e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0009773!3.41e-37!12;UBERON:0001231!3.41e-37!12;UBERON:0004810!3.41e-37!12;UBERON:0004211!1.60e-27!16;UBERON:0001285!1.60e-27!16;UBERON:0007684!1.60e-27!16;UBERON:0003220!1.60e-27!16;UBERON:0004208!1.60e-27!16;UBERON:0006555!8.14e-26!17;UBERON:0005103!8.14e-26!17;UBERON:0000083!8.14e-26!17;UBERON:0009201!8.14e-26!17;UBERON:0004819!8.14e-26!17;UBERON:0006553!8.14e-26!17;UBERON:0003074!8.14e-26!17;UBERON:0003060!8.14e-26!17;UBERON:0000080!2.68e-24!18;UBERON:0002120!2.68e-24!18;UBERON:0004875!2.68e-24!18;UBERON:0005721!2.68e-24!18;UBERON:0005754!2.68e-24!18;UBERON:0007297!2.68e-24!18;UBERON:0002113!1.08e-23!27;UBERON:0003918!1.08e-23!27;UBERON:0005095!1.08e-23!27;UBERON:0007687!1.08e-23!27;UBERON:0004876!1.02e-21!20;UBERON:0003887!1.31e-20!21;UBERON:0000489!1.17e-19!32;UBERON:0006853!2.59e-18!3;UBERON:0007685!2.59e-18!3;UBERON:0004134!2.59e-18!3;UBERON:0000058!2.37e-16!26;UBERON:0001225!1.71e-15!13;UBERON:0008987!1.71e-15!13;UBERON:0006554!1.03e-13!44;UBERON:0001008!2.31e-13!45;UBERON:0001851!1.76e-12!16;UBERON:0009722!3.15e-12!11;UBERON:0007690!3.15e-12!11;UBERON:0000353!1.04e-11!17;UBERON:0003064!4.91e-11!37;UBERON:0002046!1.16e-10!5;UBERON:0004117!1.16e-10!5;UBERON:0007689!1.16e-10!5;UBERON:0007123!1.16e-10!5;UBERON:0003091!1.16e-10!5;UBERON:0005172!1.50e-10!55;UBERON:0005173!1.50e-10!55;UBERON:0002417!2.63e-09!61;UBERON:0000916!2.63e-09!61;UBERON:0008814!6.54e-09!15;UBERON:0003103!5.45e-08!69;UBERON:0003886!2.87e-07!63;UBERON:0004911!6.02e-07!1 | |ontology_enrichment_uberon=UBERON:0009773!3.41e-37!12;UBERON:0001231!3.41e-37!12;UBERON:0004810!3.41e-37!12;UBERON:0004211!1.60e-27!16;UBERON:0001285!1.60e-27!16;UBERON:0007684!1.60e-27!16;UBERON:0003220!1.60e-27!16;UBERON:0004208!1.60e-27!16;UBERON:0006555!8.14e-26!17;UBERON:0005103!8.14e-26!17;UBERON:0000083!8.14e-26!17;UBERON:0009201!8.14e-26!17;UBERON:0004819!8.14e-26!17;UBERON:0006553!8.14e-26!17;UBERON:0003074!8.14e-26!17;UBERON:0003060!8.14e-26!17;UBERON:0000080!2.68e-24!18;UBERON:0002120!2.68e-24!18;UBERON:0004875!2.68e-24!18;UBERON:0005721!2.68e-24!18;UBERON:0005754!2.68e-24!18;UBERON:0007297!2.68e-24!18;UBERON:0002113!1.08e-23!27;UBERON:0003918!1.08e-23!27;UBERON:0005095!1.08e-23!27;UBERON:0007687!1.08e-23!27;UBERON:0004876!1.02e-21!20;UBERON:0003887!1.31e-20!21;UBERON:0000489!1.17e-19!32;UBERON:0006853!2.59e-18!3;UBERON:0007685!2.59e-18!3;UBERON:0004134!2.59e-18!3;UBERON:0000058!2.37e-16!26;UBERON:0001225!1.71e-15!13;UBERON:0008987!1.71e-15!13;UBERON:0006554!1.03e-13!44;UBERON:0001008!2.31e-13!45;UBERON:0001851!1.76e-12!16;UBERON:0009722!3.15e-12!11;UBERON:0007690!3.15e-12!11;UBERON:0000353!1.04e-11!17;UBERON:0003064!4.91e-11!37;UBERON:0002046!1.16e-10!5;UBERON:0004117!1.16e-10!5;UBERON:0007689!1.16e-10!5;UBERON:0007123!1.16e-10!5;UBERON:0003091!1.16e-10!5;UBERON:0005172!1.50e-10!55;UBERON:0005173!1.50e-10!55;UBERON:0002417!2.63e-09!61;UBERON:0000916!2.63e-09!61;UBERON:0008814!6.54e-09!15;UBERON:0003103!5.45e-08!69;UBERON:0003886!2.87e-07!63;UBERON:0004911!6.02e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.83e-50;10!UBERON:0009773;2.83e-50;10!UBERON:0001231;2.83e-50;10!UBERON:0004810;2.83e-50;10!UBERON:0002113;3.82e-34;24!UBERON:0011143;3.82e-34;24!UBERON:0006555;2.30e-33;15!UBERON:0004819;2.30e-33;15!UBERON:0001285;2.30e-33;15!UBERON:0007684;2.30e-33;15!UBERON:0006853;2.17e-32;3!UBERON:0007685;2.17e-32;3!UBERON:0004134;2.17e-32;3!UBERON:0000489;4.41e-28;29!UBERON:0006554;4.12e-27;30!UBERON:0001008;4.12e-27;30!UBERON:0001225;8.11e-22;12!UBERON:0008987;8.11e-22;12!UBERON:0001851;1.88e-17;15!UBERON:0000353;1.88e-17;15!UBERON:0004911;1.72e-11;1!UBERON:0005172;2.69e-10;52!UBERON:0005173;2.69e-10;52!UBERON:0002417;1.82e-07;58!UBERON:0000916;1.82e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.93e-50,10;UBERON:0004211,2.35e-33,15;UBERON:0009773,2.35e-33,15;UBERON:0001231,2.35e-33,15;UBERON:0001285,2.35e-33,15;UBERON:0007684,2.35e-33,15;UBERON:0004208,2.35e-33,15;UBERON:0006853,2.17e-32,3;UBERON:0007685,2.17e-32,3;UBERON:0004134,2.17e-32,3;UBERON:0002113,1.97e-31,26;UBERON:0003918,1.97e-31,26;UBERON:0011143,1.97e-31,26;UBERON:0005095,1.97e-31,26;UBERON:0007687,1.97e-31,26;UBERON:0006555,3.07e-31,16;UBERON:0004819,3.07e-31,16;UBERON:0000489,3.39e-26,31;UBERON:0001225,8.28e-22,12;UBERON:0008987,8.28e-22,12;UBERON:0001851,1.91e-17,15;UBERON:0000353,1.91e-17,15;UBERON:0006554,6.54e-17,47;UBERON:0001008,1.55e-16,48;UBERON:0005172,1.42e-14,54;UBERON:0005173,1.42e-14,54;UBERON:0002417,5.30e-13,60;UBERON:0000916,5.30e-13,60;UBERON:0004911,1.81e-11,1;UBERON:0003103,2.45e-11,68;UBERON:0005177,3.01e-07,101 | |||
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|short_description=p1@CLDN16 | |short_description=p1@CLDN16 | ||
}} | }} |
Latest revision as of 09:53, 17 September 2015
Short description: | p1@CLDN16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLDN16_5end |
Coexpression cluster: | C601_endometrial_clear_thyroid_kidney_Renal_serous_endometrioid |
Association with transcript: | 26bp_to_CU687000, DQ305102, HQ448426_5end |
EntrezGene: | CLDN16 |
HGNC: | 2037 |
UniProt: | A0SDD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.93e-50 | 10 |
nephron tubule epithelial cell | 2.93e-50 | 10 |
epithelial cell of nephron | 2.35e-33 | 15 |
brush border epithelial cell | 2.17e-32 | 3 |
kidney cortex tubule cell | 2.17e-32 | 3 |
epithelial cell of proximal tubule | 2.17e-32 | 3 |
kidney cell | 2.26e-29 | 17 |
kidney epithelial cell | 2.26e-29 | 17 |
kidney cortical cell | 8.28e-22 | 12 |
renal cortical epithelial cell | 8.28e-22 | 12 |
epithelial cell of uterus | 1.18e-16 | 6 |
stromal cell of endometrium | 1.18e-16 | 6 |
perirenal preadipocyte | 1.63e-11 | 1 |
serous secreting cell | 1.81e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.93e-50 | 10 |
nephron epithelium | 2.35e-33 | 15 |
renal tubule | 2.35e-33 | 15 |
nephron tubule | 2.35e-33 | 15 |
nephron | 2.35e-33 | 15 |
uriniferous tubule | 2.35e-33 | 15 |
nephrogenic mesenchyme | 2.35e-33 | 15 |
renal cortex tubule | 2.17e-32 | 3 |
region of nephron tubule | 2.17e-32 | 3 |
proximal tubule | 2.17e-32 | 3 |
kidney | 1.97e-31 | 26 |
kidney mesenchyme | 1.97e-31 | 26 |
upper urinary tract | 1.97e-31 | 26 |
kidney rudiment | 1.97e-31 | 26 |
kidney field | 1.97e-31 | 26 |
excretory tube | 3.07e-31 | 16 |
kidney epithelium | 3.07e-31 | 16 |
cavitated compound organ | 3.39e-26 | 31 |
cortex of kidney | 8.28e-22 | 12 |
renal parenchyma | 8.28e-22 | 12 |
cortex | 1.91e-17 | 15 |
parenchyma | 1.91e-17 | 15 |
urinary system structure | 6.54e-17 | 47 |
renal system | 1.55e-16 | 48 |
abdomen element | 1.42e-14 | 54 |
abdominal segment element | 1.42e-14 | 54 |
abdominal segment of trunk | 5.30e-13 | 60 |
abdomen | 5.30e-13 | 60 |
epithelium of female gonad | 1.81e-11 | 1 |
compound organ | 2.45e-11 | 68 |
trunk region element | 3.01e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.66e-22 | 2 |
female reproductive endometrioid cancer | 1.18e-16 | 6 |
adenocarcinoma | 6.55e-15 | 25 |
female reproductive organ cancer | 8.87e-14 | 27 |
reproductive organ cancer | 8.40e-13 | 29 |
anemia | 1.32e-11 | 1 |
ovary epithelial cancer | 1.81e-11 | 1 |