FFCP PHASE1:Hg19::chr16:67552303..67552342,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:67552303..67552342,+ | |||
|coexpression_cluster_id=C148 | |||
|description=CAGE_peak_at_chr16:67552303..67552342,+ | |description=CAGE_peak_at_chr16:67552303..67552342,+ | ||
|id=chr16:67552303..67552342,+ | |id=chr16:67552303..67552342,+ | ||
|ontology_enrichment_celltype=CL:1000507!6.64e-28!12;CL:1000494!6.64e-28!12;CL:1000497!5.28e-24!18;CL:0002518!5.28e-24!18;CL:0000239!6.66e-22!3;CL:1000615!6.66e-22!3;CL:0002306!6.66e-22!3;CL:1000449!9.77e-21!16;CL:0002681!5.29e-19!13;CL:0002584!5.29e-19!13;CL:0000650!1.62e-10!3;CL:1000618!1.62e-10!3;CL:1001318!1.62e-10!3;CL:0002173!1.62e-10!3;CL:1000500!1.62e-10!3;CL:0000313!6.24e-08!1 | |ontology_enrichment_celltype=CL:1000507!6.64e-28!12;CL:1000494!6.64e-28!12;CL:1000497!5.28e-24!18;CL:0002518!5.28e-24!18;CL:0000239!6.66e-22!3;CL:1000615!6.66e-22!3;CL:0002306!6.66e-22!3;CL:1000449!9.77e-21!16;CL:0002681!5.29e-19!13;CL:0002584!5.29e-19!13;CL:0000650!1.62e-10!3;CL:1000618!1.62e-10!3;CL:1001318!1.62e-10!3;CL:0002173!1.62e-10!3;CL:1000500!1.62e-10!3;CL:0000313!6.24e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.18e-12;17!CL:0002518;2.18e-12;17!CL:0000650;2.32e-12;2!CL:1000500;2.32e-12;2!CL:1000618;2.32e-12;2!CL:1001318;2.32e-12;2!CL:0002173;2.32e-12;2!CL:0000047;3.24e-12;2!CL:1000507;8.46e-10;10!CL:1000494;8.46e-10;10!CL:0000239;1.12e-08;3!CL:1000615;1.12e-08;3!CL:0002306;1.12e-08;3!CL:0002681;2.55e-08;12!CL:0002584;2.55e-08;12!CL:1000449;7.86e-07;15!CL:0000669;8.14e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.23e-12,17;CL:0002518,2.23e-12,17;CL:0000650,2.59e-12,2;CL:1000500,2.59e-12,2;CL:1000618,2.59e-12,2;CL:1001318,2.59e-12,2;CL:0002173,2.59e-12,2;CL:1000507,8.84e-10,10;CL:1000494,8.84e-10,10;CL:0000239,1.12e-08,3;CL:1000615,1.12e-08,3;CL:0002306,1.12e-08,3;CL:0002681,2.65e-08,12;CL:0002584,2.65e-08,12;CL:1000449,8.09e-07,15;CL:0000669,8.61e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003918;9.82e-21;10!UBERON:0007687;9.82e-21;10!UBERON:0003104;2.39e-07;31 | |||
|ontology_enrichment_disease=DOID:4468!5.92e-15!2;DOID:2355!2.89e-08!1;DOID:630!3.10e-08!1;DOID:0050177!3.10e-08!1;DOID:0050427!3.10e-08!1;DOID:12603!4.72e-08!1;DOID:2152!6.24e-08!1 | |ontology_enrichment_disease=DOID:4468!5.92e-15!2;DOID:2355!2.89e-08!1;DOID:630!3.10e-08!1;DOID:0050177!3.10e-08!1;DOID:0050427!3.10e-08!1;DOID:12603!4.72e-08!1;DOID:2152!6.24e-08!1 | ||
|ontology_enrichment_disease_v019=DOID:4468;3.24e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,3.24e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0009773!6.64e-28!12;UBERON:0001231!6.64e-28!12;UBERON:0004810!6.64e-28!12;UBERON:0002113!1.25e-24!27;UBERON:0003918!1.25e-24!27;UBERON:0005095!1.25e-24!27;UBERON:0007687!1.25e-24!27;UBERON:0006853!6.66e-22!3;UBERON:0007685!6.66e-22!3;UBERON:0004134!6.66e-22!3;UBERON:0004211!9.77e-21!16;UBERON:0001285!9.77e-21!16;UBERON:0007684!9.77e-21!16;UBERON:0003220!9.77e-21!16;UBERON:0004208!9.77e-21!16;UBERON:0000489!1.62e-20!32;UBERON:0006555!1.80e-19!17;UBERON:0005103!1.80e-19!17;UBERON:0000083!1.80e-19!17;UBERON:0009201!1.80e-19!17;UBERON:0004819!1.80e-19!17;UBERON:0006553!1.80e-19!17;UBERON:0003074!1.80e-19!17;UBERON:0003060!1.80e-19!17;UBERON:0001225!5.29e-19!13;UBERON:0008987!5.29e-19!13;UBERON:0000080!2.41e-18!18;UBERON:0002120!2.41e-18!18;UBERON:0004875!2.41e-18!18;UBERON:0005721!2.41e-18!18;UBERON:0005754!2.41e-18!18;UBERON:0007297!2.41e-18!18;UBERON:0004876!1.98e-16!20;UBERON:0003887!1.31e-15!21;UBERON:0001851!2.38e-15!16;UBERON:0006554!1.87e-14!44;UBERON:0000353!2.04e-14!17;UBERON:0001008!4.27e-14!45;UBERON:0000058!1.90e-12!26;UBERON:0005172!3.19e-11!55;UBERON:0005173!3.19e-11!55;UBERON:0003567!1.62e-10!3;UBERON:0003838!1.62e-10!3;UBERON:0005169!1.62e-10!3;UBERON:0002321!1.62e-10!3;UBERON:0005215!1.62e-10!3;UBERON:0002303!1.62e-10!3;UBERON:0002319!1.62e-10!3;UBERON:0002417!5.97e-10!61;UBERON:0000916!5.97e-10!61;UBERON:0003103!1.34e-08!69;UBERON:0003064!1.69e-08!37;UBERON:0004911!6.24e-08!1;UBERON:0005177!2.47e-07!107;UBERON:0009569!7.89e-07!113 | |ontology_enrichment_uberon=UBERON:0009773!6.64e-28!12;UBERON:0001231!6.64e-28!12;UBERON:0004810!6.64e-28!12;UBERON:0002113!1.25e-24!27;UBERON:0003918!1.25e-24!27;UBERON:0005095!1.25e-24!27;UBERON:0007687!1.25e-24!27;UBERON:0006853!6.66e-22!3;UBERON:0007685!6.66e-22!3;UBERON:0004134!6.66e-22!3;UBERON:0004211!9.77e-21!16;UBERON:0001285!9.77e-21!16;UBERON:0007684!9.77e-21!16;UBERON:0003220!9.77e-21!16;UBERON:0004208!9.77e-21!16;UBERON:0000489!1.62e-20!32;UBERON:0006555!1.80e-19!17;UBERON:0005103!1.80e-19!17;UBERON:0000083!1.80e-19!17;UBERON:0009201!1.80e-19!17;UBERON:0004819!1.80e-19!17;UBERON:0006553!1.80e-19!17;UBERON:0003074!1.80e-19!17;UBERON:0003060!1.80e-19!17;UBERON:0001225!5.29e-19!13;UBERON:0008987!5.29e-19!13;UBERON:0000080!2.41e-18!18;UBERON:0002120!2.41e-18!18;UBERON:0004875!2.41e-18!18;UBERON:0005721!2.41e-18!18;UBERON:0005754!2.41e-18!18;UBERON:0007297!2.41e-18!18;UBERON:0004876!1.98e-16!20;UBERON:0003887!1.31e-15!21;UBERON:0001851!2.38e-15!16;UBERON:0006554!1.87e-14!44;UBERON:0000353!2.04e-14!17;UBERON:0001008!4.27e-14!45;UBERON:0000058!1.90e-12!26;UBERON:0005172!3.19e-11!55;UBERON:0005173!3.19e-11!55;UBERON:0003567!1.62e-10!3;UBERON:0003838!1.62e-10!3;UBERON:0005169!1.62e-10!3;UBERON:0002321!1.62e-10!3;UBERON:0005215!1.62e-10!3;UBERON:0002303!1.62e-10!3;UBERON:0002319!1.62e-10!3;UBERON:0002417!5.97e-10!61;UBERON:0000916!5.97e-10!61;UBERON:0003103!1.34e-08!69;UBERON:0003064!1.69e-08!37;UBERON:0004911!6.24e-08!1;UBERON:0005177!2.47e-07!107;UBERON:0009569!7.89e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.88e-23;24!UBERON:0011143;2.88e-23;24!UBERON:0000489;2.62e-19;29!UBERON:0006554;1.13e-18;30!UBERON:0001008;1.13e-18;30!UBERON:0003567;2.32e-12;2!UBERON:0003838;2.32e-12;2!UBERON:0003586;2.32e-12;2!UBERON:0005169;2.32e-12;2!UBERON:0002321;2.32e-12;2!UBERON:0005215;2.32e-12;2!UBERON:0002303;2.32e-12;2!UBERON:0002319;2.32e-12;2!UBERON:0004211;8.46e-10;10!UBERON:0009773;8.46e-10;10!UBERON:0001231;8.46e-10;10!UBERON:0004810;8.46e-10;10!UBERON:0006853;1.12e-08;3!UBERON:0007685;1.12e-08;3!UBERON:0004134;1.12e-08;3!UBERON:0001225;2.55e-08;12!UBERON:0008987;2.55e-08;12!UBERON:0005172;1.52e-07;52!UBERON:0005173;1.52e-07;52!UBERON:0001851;7.86e-07;15!UBERON:0006555;7.86e-07;15!UBERON:0000353;7.86e-07;15!UBERON:0004819;7.86e-07;15!UBERON:0001285;7.86e-07;15!UBERON:0007684;7.86e-07;15!UBERON:0003891;8.14e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,1.75e-21,26;UBERON:0003918,1.75e-21,26;UBERON:0011143,1.75e-21,26;UBERON:0005095,1.75e-21,26;UBERON:0007687,1.75e-21,26;UBERON:0000489,4.58e-18,31;UBERON:0003567,2.59e-12,2;UBERON:0003838,2.59e-12,2;UBERON:0003586,2.59e-12,2;UBERON:0005169,2.59e-12,2;UBERON:0002321,2.59e-12,2;UBERON:0005215,2.59e-12,2;UBERON:0002303,2.59e-12,2;UBERON:0002319,2.59e-12,2;UBERON:0006554,5.42e-12,47;UBERON:0001008,9.54e-12,48;UBERON:0005172,1.85e-10,54;UBERON:0005173,1.85e-10,54;UBERON:0004810,8.84e-10,10;UBERON:0002417,1.99e-09,60;UBERON:0000916,1.99e-09,60;UBERON:0006853,1.12e-08,3;UBERON:0007685,1.12e-08,3;UBERON:0004134,1.12e-08,3;UBERON:0003103,2.47e-08,68;UBERON:0001225,2.65e-08,12;UBERON:0008987,2.65e-08,12;UBERON:0005177,6.74e-08,101;UBERON:0009569,4.12e-07,112;UBERON:0001851,8.09e-07,15;UBERON:0004211,8.09e-07,15;UBERON:0009773,8.09e-07,15;UBERON:0000353,8.09e-07,15;UBERON:0001231,8.09e-07,15;UBERON:0001285,8.09e-07,15;UBERON:0007684,8.09e-07,15;UBERON:0004208,8.09e-07,15;UBERON:0003891,8.61e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,0,0,0,0,0,0,0.812839312631559,2.00675909541941,0.764628819135115,2.49322802678617,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,1.46909527343233,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338693328263138,0,0,0,0,0,0,0,0,0,7.32893077882543,23.0275641912642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89371057406372,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34153810143313,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0.784349769176855,0,0,0,0,0,0,0.812839312631559,2.00675909541941,0.764628819135115,2.49322802678617,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,1.46909527343233,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338693328263138,0,0,0,0,0,0,0,0,0,7.32893077882543,23.0275641912642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89371057406372,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.34153810143313,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p@chr16:67552303..67552342,+ | |short_description=p@chr16:67552303..67552342,+ | ||
}} | }} |
Latest revision as of 11:27, 25 July 2015
Short description: | p@chr16:67552303..67552342, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:67552303..67552342, + |
Coexpression cluster: | C148_kidney_small_epididymis_pancreas_serous_duodenum_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.23e-12 | 17 |
kidney epithelial cell | 2.23e-12 | 17 |
mesangial cell | 2.59e-12 | 2 |
kidney interstitial cell | 2.59e-12 | 2 |
juxtaglomerular complex cell | 2.59e-12 | 2 |
renal interstitial pericyte | 2.59e-12 | 2 |
extraglomerular mesangial cell | 2.59e-12 | 2 |
kidney tubule cell | 8.84e-10 | 10 |
nephron tubule epithelial cell | 8.84e-10 | 10 |
brush border epithelial cell | 1.12e-08 | 3 |
kidney cortex tubule cell | 1.12e-08 | 3 |
epithelial cell of proximal tubule | 1.12e-08 | 3 |
kidney cortical cell | 2.65e-08 | 12 |
renal cortical epithelial cell | 2.65e-08 | 12 |
epithelial cell of nephron | 8.09e-07 | 15 |
pericyte cell | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 3.24e-12 | 2 |