FFCP PHASE1:Hg19::chr22:30642782..30642793,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3976 | |EntrezGene=3976 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6596 | |HGNC=6596 | ||
|TSSclassifier=strong | |||
|UniProt=P15018 | |UniProt=P15018 | ||
|association_with_transcript=2bp_to_NM_002309,uc003agz.2,uc011aks.1_5end | |association_with_transcript=2bp_to_NM_002309,uc003agz.2,uc011aks.1_5end | ||
|cluster_id=chr22:30642782..30642793,- | |||
|description=CAGE_peak_2_at_LIF_5end | |description=CAGE_peak_2_at_LIF_5end | ||
|id=chr22:30642782..30642793,- | |id=chr22:30642782..30642793,- | ||
|ontology_enrichment_celltype=CL:0000680!1.01e-20!57;CL:0000056!1.01e-20!57;CL:0000355!1.01e-20!57;CL:0000192!1.51e-20!42;CL:0000514!1.51e-20!42;CL:0000187!8.91e-20!54;CL:0000183!1.37e-19!59;CL:0000359!8.43e-19!32;CL:0000393!9.64e-18!60;CL:0000211!9.64e-18!60;CL:0000055!5.98e-14!180;CL:0000222!6.75e-14!119;CL:0000220!1.33e-12!246;CL:0002321!3.58e-12!248;CL:1000497!2.19e-07!18;CL:0002518!2.19e-07!18 | |ontology_enrichment_celltype=CL:0000680!1.01e-20!57;CL:0000056!1.01e-20!57;CL:0000355!1.01e-20!57;CL:0000192!1.51e-20!42;CL:0000514!1.51e-20!42;CL:0000187!8.91e-20!54;CL:0000183!1.37e-19!59;CL:0000359!8.43e-19!32;CL:0000393!9.64e-18!60;CL:0000211!9.64e-18!60;CL:0000055!5.98e-14!180;CL:0000222!6.75e-14!119;CL:0000220!1.33e-12!246;CL:0002321!3.58e-12!248;CL:1000497!2.19e-07!18;CL:0002518!2.19e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.68e-22;32!CL:0000192;2.47e-13;43!CL:1000497;3.37e-13;17!CL:0002518;3.37e-13;17!CL:1000507;5.20e-13;10!CL:1000494;5.20e-13;10!CL:1000449;3.28e-11;15!CL:0000163;4.75e-10;9!CL:0000097;4.43e-09;5!CL:0002681;6.37e-08;12!CL:0002584;6.37e-08;12!CL:0002595;6.59e-08;5!CL:0002539;6.80e-08;10!CL:0000187;3.71e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,6.96e-23,32;CL:0000192,1.52e-17,43;CL:0000514,1.52e-17,43;CL:0000187,5.27e-14,55;CL:0000680,9.34e-14,58;CL:0000056,9.34e-14,58;CL:0000355,9.34e-14,58;CL:1000497,4.11e-13,17;CL:0002518,4.11e-13,17;CL:1000507,6.16e-13,10;CL:1000494,6.16e-13,10;CL:0000393,7.10e-13,61;CL:0000211,7.10e-13,61;CL:0000222,4.43e-12,121;CL:1000449,4.28e-11,15;CL:0000163,5.55e-10,9;CL:0000097,4.50e-09,5;CL:0002028,4.50e-09,5;CL:0002595,5.78e-08,5;CL:0002539,6.92e-08,10;CL:0002681,8.57e-08,12;CL:0002584,8.57e-08,12;CL:0002321,1.96e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000514;2.47e-13;43!CL:0000355;5.88e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!8.56e-08!14 | |ontology_enrichment_disease=DOID:2394!8.56e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;5.54e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.96e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0001134!7.01e-18!61;UBERON:0002036!7.01e-18!61;UBERON:0003082!7.01e-18!61;UBERON:0002385!1.28e-16!63;UBERON:0001015!1.28e-16!63;UBERON:0000383!1.28e-16!63;UBERON:0005256!1.38e-16!143;UBERON:0000486!7.05e-16!82;UBERON:0000914!4.53e-15!83;UBERON:0002329!4.53e-15!83;UBERON:0003077!4.53e-15!83;UBERON:0003059!4.53e-15!83;UBERON:0007282!4.53e-15!83;UBERON:0009618!4.53e-15!83;UBERON:0007285!4.53e-15!83;UBERON:0004290!4.72e-15!70;UBERON:0002100!1.19e-10!216;UBERON:0000481!1.45e-10!347;UBERON:0001637!1.10e-09!42;UBERON:0003509!1.10e-09!42;UBERON:0004572!1.10e-09!42;UBERON:0003104!1.89e-09!238;UBERON:0009142!1.89e-09!238;UBERON:0000490!2.68e-09!138;UBERON:0004573!2.89e-09!33;UBERON:0004571!2.89e-09!33;UBERON:0003914!4.40e-09!118;UBERON:0000119!7.67e-09!312;UBERON:0002049!8.89e-09!79;UBERON:0007798!8.89e-09!79;UBERON:0007625!2.21e-08!11;UBERON:0000483!2.59e-08!309;UBERON:0000475!5.02e-08!365;UBERON:0004535!3.61e-07!110;UBERON:0001009!7.43e-07!113;UBERON:0006554!7.57e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.08e-13;33!UBERON:0004571;1.08e-13;33!UBERON:0007625;1.32e-13;11!UBERON:0004211;5.20e-13;10!UBERON:0009773;5.20e-13;10!UBERON:0001231;5.20e-13;10!UBERON:0004810;5.20e-13;10!UBERON:0006555;3.28e-11;15!UBERON:0004819;3.28e-11;15!UBERON:0001285;3.28e-11;15!UBERON:0007684;3.28e-11;15!UBERON:0001637;1.53e-10;42!UBERON:0003509;1.53e-10;42!UBERON:0004572;1.53e-10;42!UBERON:0000992;2.92e-09;13!UBERON:0003914;2.50e-08;74!UBERON:0002113;3.39e-08;24!UBERON:0011143;3.39e-08;24!UBERON:0001456;4.07e-08;21!UBERON:0006554;4.93e-08;30!UBERON:0001008;4.93e-08;30!UBERON:0001225;6.37e-08;12!UBERON:0008987;6.37e-08;12!UBERON:0003834;6.59e-08;5!UBERON:0001533;6.59e-08;5!UBERON:0004237;6.80e-08;10!UBERON:0004695;6.80e-08;10!UBERON:0002111;6.80e-08;10!UBERON:0004178;6.80e-08;10!UBERON:0000019;7.26e-08;19!UBERON:0000047;7.26e-08;19!UBERON:0004088;7.26e-08;19!UBERON:0010230;7.26e-08;19!UBERON:0000970;2.54e-07;20!UBERON:0000489;2.94e-07;29!UBERON:0001851;3.39e-07;15!UBERON:0000488;4.61e-07;4!UBERON:0002118;6.22e-07;5!UBERON:0001801;7.48e-07;14!UBERON:0002104;7.85e-07;21 | |||
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| ||
|short_description=p2@LIF | |short_description=p2@LIF | ||
}} | }} |
Latest revision as of 16:58, 19 September 2015
Short description: | p2@LIF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIF_5end |
Coexpression cluster: | NA |
Association with transcript: | 2bp_to_NM_002309, uc003agz.2, uc011aks.1_5end |
EntrezGene: | LIF |
HGNC: | 6596 |
UniProt: | P15018 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 6.96e-23 | 32 |
smooth muscle cell | 1.52e-17 | 43 |
smooth muscle myoblast | 1.52e-17 | 43 |
muscle cell | 5.27e-14 | 55 |
muscle precursor cell | 9.34e-14 | 58 |
myoblast | 9.34e-14 | 58 |
multi-potent skeletal muscle stem cell | 9.34e-14 | 58 |
kidney cell | 4.11e-13 | 17 |
kidney epithelial cell | 4.11e-13 | 17 |
kidney tubule cell | 6.16e-13 | 10 |
nephron tubule epithelial cell | 6.16e-13 | 10 |
electrically responsive cell | 7.10e-13 | 61 |
electrically active cell | 7.10e-13 | 61 |
mesodermal cell | 4.43e-12 | 121 |
epithelial cell of nephron | 4.28e-11 | 15 |
endocrine cell | 5.55e-10 | 9 |
mast cell | 4.50e-09 | 5 |
basophil mast progenitor cell | 4.50e-09 | 5 |
smooth muscle cell of the subclavian artery | 5.78e-08 | 5 |
aortic smooth muscle cell | 6.92e-08 | 10 |
kidney cortical cell | 8.57e-08 | 12 |
renal cortical epithelial cell | 8.57e-08 | 12 |
embryonic cell | 1.96e-07 | 250 |
Ontology term | p-value | n |
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