FFCP PHASE1:Hg19::chr1:28261464..28261484,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27293 | |EntrezGene=27293 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21416 | |HGNC=21416 | ||
|TSSclassifier=strong | |||
|UniProt=Q92485 | |UniProt=Q92485 | ||
|association_with_transcript=-19bp_to_ENST00000373894,NM_001009568,NM_014474,uc001bpf.2,uc001bpg.2,uc010ofq.1,uc010ofr.1_5end | |association_with_transcript=-19bp_to_ENST00000373894,NM_001009568,NM_014474,uc001bpf.2,uc001bpg.2,uc010ofq.1,uc010ofr.1_5end | ||
|cluster_id=chr1:28261464..28261484,+ | |||
|description=CAGE_peak_3_at_SMPDL3B_5end | |description=CAGE_peak_3_at_SMPDL3B_5end | ||
|id=chr1:28261464..28261484,+ | |id=chr1:28261464..28261484,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.26e-13!254 | |ontology_enrichment_celltype=CL:0000066!9.26e-13!254 | ||
| | |ontology_enrichment_celltype_v019=CL:1000507;2.92e-16;10!CL:1000494;2.92e-16;10!CL:1000449;2.03e-13;15!CL:1000497;1.15e-11;17!CL:0002518;1.15e-11;17!CL:0002681;1.27e-09;12!CL:0002584;1.27e-09;12!CL:0000650;1.43e-07;2!CL:1000500;1.43e-07;2!CL:1000618;1.43e-07;2!CL:1001318;1.43e-07;2!CL:0002173;1.43e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.99e-16,10;CL:1000494,3.99e-16,10;CL:1000449,2.60e-13,15;CL:1000497,1.42e-11,17;CL:0002518,1.42e-11,17;CL:0002681,1.61e-09,12;CL:0002584,1.61e-09,12;CL:0000650,2.09e-07,2;CL:1000500,2.09e-07,2;CL:1000618,2.09e-07,2;CL:1001318,2.09e-07,2;CL:0002173,2.09e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.15e-20!235;DOID:14566!1.99e-19!239;DOID:305!6.93e-18!106;DOID:0050687!1.33e-17!143;DOID:0050686!1.14e-09!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;9.98e-09;31!DOID:5409;1.38e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,1.20e-09,137;DOID:8692,6.36e-09,31;DOID:162,2.28e-08,235;DOID:2531,3.76e-08,51;DOID:0060083,3.76e-08,51;DOID:14566,4.98e-08,239;DOID:5409,2.32e-07,4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.92e-16;10!UBERON:0009773;2.92e-16;10!UBERON:0001231;2.92e-16;10!UBERON:0004810;2.92e-16;10!UBERON:0006555;2.03e-13;15!UBERON:0004819;2.03e-13;15!UBERON:0001285;2.03e-13;15!UBERON:0007684;2.03e-13;15!UBERON:0002113;4.62e-12;24!UBERON:0011143;4.62e-12;24!UBERON:0000489;1.26e-09;29!UBERON:0001225;1.27e-09;12!UBERON:0008987;1.27e-09;12!UBERON:0006554;3.09e-09;30!UBERON:0001008;3.09e-09;30!UBERON:0003567;1.43e-07;2!UBERON:0003838;1.43e-07;2!UBERON:0003586;1.43e-07;2!UBERON:0005169;1.43e-07;2!UBERON:0002321;1.43e-07;2!UBERON:0005215;1.43e-07;2!UBERON:0002303;1.43e-07;2!UBERON:0002319;1.43e-07;2!UBERON:0001851;1.50e-07;15!UBERON:0000353;1.50e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.99e-16,10;UBERON:0004211,2.60e-13,15;UBERON:0009773,2.60e-13,15;UBERON:0001231,2.60e-13,15;UBERON:0001285,2.60e-13,15;UBERON:0007684,2.60e-13,15;UBERON:0004208,2.60e-13,15;UBERON:0006555,2.18e-12,16;UBERON:0004819,2.18e-12,16;UBERON:0002113,7.27e-11,26;UBERON:0003918,7.27e-11,26;UBERON:0011143,7.27e-11,26;UBERON:0005095,7.27e-11,26;UBERON:0007687,7.27e-11,26;UBERON:0001225,1.61e-09,12;UBERON:0008987,1.61e-09,12;UBERON:0000489,8.73e-09,31;UBERON:0001851,1.81e-07,15;UBERON:0000353,1.81e-07,15;UBERON:0003567,2.09e-07,2;UBERON:0003838,2.09e-07,2;UBERON:0003586,2.09e-07,2;UBERON:0005169,2.09e-07,2;UBERON:0002321,2.09e-07,2;UBERON:0005215,2.09e-07,2;UBERON:0002303,2.09e-07,2;UBERON:0002319,2.09e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0.774672005803016,1.9903692548239,2.34880351467878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,2.64342657158052,1.12101712596307,0.526768169550154,0,0,0,0.501559486172034,0,0,0,0.111410456885174,0,0,0,0.768547918354051,0.130059347559878,0,0,0,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.785874452986276,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0.775250277507987,0,0,0,0,0.24406205754817,0,0,0.357198913136319,0.44905874525234,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0.365921118388786,0.795178609928912,0.929551542956147,0.207322110030741,0.504641701751257,1.45990943630332,0,0,0,0,0,0,0,0.241011029883482,0,0.217879444092406,0,0.134831308160164,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,0,0.329250856225877,0,0,0.370353780634118,0,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.899756920638513,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,0.200506470303285,0.644566922551274,0,0.182091168006717,0,2.25599806453706,3.85076685522074,6.27479815341484,0,2.42768746453614,0,0,0,0,1.35473218771926,2.00675909541941,4.58777291481069,0,0.671624264166535,0.438519753291869,0,1.02580050046556,2.29610251989794,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0.127612712494584,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,5.58822240011887,2.68107518185313,1.69338866179106,5.843194924942,1.40398589056729,0,0.156679895773023,0,2.20079311142084,0,0,0,0,0,0,0,0.19538809540204,1.9488432172667,0,0,1.6653598399891,0,0,0,0.242721043499027,0.445773537109913,0,0,0,0,0.994147647766298,0.281338832821026,0.111308705022906,0,0.211125408127993,0,0.552567831062295,6.2983186963569,0.409074730008619,0.492339221844278,0,1.61763032065188,0,0,0,0,0,0,0.0927680981618513,0,0,0.174919999992391,0,0.568967241427498,0,0.236387681767936,2.75794698593172,0,0,0,0.241192877250816,0,0.110579259931225,0.295547618953547,0,0.435753854075961,0.278847488557207,0.153900517007594,0,1.38338342632836,2.96200226552248,0.108647371922008,0,0.0915975934018623,0,0,0.31396051279005,1.99454018280188,0.451191321234361,0.19606253431774,0.335643173951685,0.569261198172555,2.06617552674492,1.89898258075224,0.326465616318295,0.424059214301822,2.380275037163,0,0.265372693510018,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0.30607276163049,0.063186579628488,0.150323419414493,0.414752765588989,0,0,0,0,0,0,2.42983633669183,0.195984794828755,0.0870592065804026,0.52418000472609,0,0.19351266257817,0.365446585430928,0.492692742319255,0.193978032976839,0.176512253383001,0.225980740780532,0.137041924646751,0,0.189932387867636,0.782205530939212,0.480952921509202,0.426905989478705,0.599428828746391,0.288180834308212,0.916292769327325,0,0.432164393964449,0.869767748958028,0.235694034616795,0,0,0.101998217636322,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,1.16495949527454,0.945398187686684,0.247247575143499,0.674035438541849,0.0984274815147488,0,0.795229689809303,0.272406812223151,0.643012593860077,1.37539436597234,1.24632101408756,0.674921674654501,0,0.121499113316049,0,1.02447419488958,1.78345599658994,0,0,0.383830394638891,0,0,0,0,0,0,0,0.656740165994712,0,0,0,0,0,0,0.513260513652988,0.704815022316672,0.106787412567695,0.157204305099666,0,1.48849806543585,5.3355140612445,3.16660755790329,0,0,0,0,0,0.785270481251171,0,0.122026264901963,0,0,0.110929051536852,0.18628920882415,0.968440444553616,0,0,0.285465333544967,0,0.936669811613763,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.214441591374926,0,0,0.231522474323834,0.244736704506468,0,0.617602894321944,1.53498834705095,0.176689145945881,0,0,0,0,0,0,1.36402216187572,0.930053882193542,1.30852315404675,0,0,0.211312123358627,0,0.640150378164845,1.03328987796489,0,0,0.419638523158333,0,0,0.107824811396682,0.314531883711793,0,0.678930119816101,0,1.85903646388503,0.558644917973244,0,1.02520268501629,2.40171224485641,0,0,0.449604575675217,0,0,0,0,0,0.161475645631851,0,0.588886311006154,0,0,0.115525666150338,0,0,0,0.451261970095544,0.20170506870352,3.12605604493237,1.83334686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| 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| ||
|short_description=p3@SMPDL3B | |short_description=p3@SMPDL3B | ||
}} | }} |
Latest revision as of 09:19, 17 September 2015
Short description: | p3@SMPDL3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMPDL3B_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000373894, NM_001009568, NM_014474, uc001bpf.2, uc001bpg.2, uc010ofq.1, uc010ofr.1_5end |
EntrezGene: | SMPDL3B |
HGNC: | 21416 |
UniProt: | Q92485 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.99e-16 | 10 |
nephron tubule epithelial cell | 3.99e-16 | 10 |
epithelial cell of nephron | 2.60e-13 | 15 |
kidney cell | 1.42e-11 | 17 |
kidney epithelial cell | 1.42e-11 | 17 |
kidney cortical cell | 1.61e-09 | 12 |
renal cortical epithelial cell | 1.61e-09 | 12 |
mesangial cell | 2.09e-07 | 2 |
kidney interstitial cell | 2.09e-07 | 2 |
juxtaglomerular complex cell | 2.09e-07 | 2 |
renal interstitial pericyte | 2.09e-07 | 2 |
extraglomerular mesangial cell | 2.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 3.99e-16 | 10 |
nephron epithelium | 2.60e-13 | 15 |
renal tubule | 2.60e-13 | 15 |
nephron tubule | 2.60e-13 | 15 |
nephron | 2.60e-13 | 15 |
uriniferous tubule | 2.60e-13 | 15 |
nephrogenic mesenchyme | 2.60e-13 | 15 |
excretory tube | 2.18e-12 | 16 |
kidney epithelium | 2.18e-12 | 16 |
kidney | 7.27e-11 | 26 |
kidney mesenchyme | 7.27e-11 | 26 |
upper urinary tract | 7.27e-11 | 26 |
kidney rudiment | 7.27e-11 | 26 |
kidney field | 7.27e-11 | 26 |
cortex of kidney | 1.61e-09 | 12 |
renal parenchyma | 1.61e-09 | 12 |
cavitated compound organ | 8.73e-09 | 31 |
cortex | 1.81e-07 | 15 |
parenchyma | 1.81e-07 | 15 |
abdomen connective tissue | 2.09e-07 | 2 |
abdominal segment connective tissue | 2.09e-07 | 2 |
trunk connective tissue | 2.09e-07 | 2 |
interstitial tissue | 2.09e-07 | 2 |
extraglomerular mesangium | 2.09e-07 | 2 |
kidney interstitium | 2.09e-07 | 2 |
juxtaglomerular apparatus | 2.09e-07 | 2 |
mesangium | 2.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 1.20e-09 | 137 |
myeloid leukemia | 6.36e-09 | 31 |
cancer | 2.28e-08 | 235 |
hematologic cancer | 3.76e-08 | 51 |
immune system cancer | 3.76e-08 | 51 |
disease of cellular proliferation | 4.98e-08 | 239 |
lung small cell carcinoma | 2.32e-07 | 4 |