FFCP PHASE1:Hg19::chr19:39329315..39329338,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:39329315..39329338,- | |||
|description=CAGE_peak_at_chr19:39329315..39329338,- | |description=CAGE_peak_at_chr19:39329315..39329338,- | ||
|id=chr19:39329315..39329338,- | |id=chr19:39329315..39329338,- | ||
|ontology_enrichment_celltype=CL:0000066!8.52e-33!254;CL:0002076!4.90e-21!43;CL:0002368!4.21e-19!13;CL:0000223!1.05e-15!59;CL:0002202!9.31e-14!9;CL:0002632!9.31e-14!9;CL:0002159!1.65e-09!13;CL:0000082!2.56e-09!19;CL:0000244!1.12e-07!4;CL:0000731!1.12e-07!4 | |ontology_enrichment_celltype=CL:0000066!8.52e-33!254;CL:0002076!4.90e-21!43;CL:0002368!4.21e-19!13;CL:0000223!1.05e-15!59;CL:0002202!9.31e-14!9;CL:0002632!9.31e-14!9;CL:0002159!1.65e-09!13;CL:0000082!2.56e-09!19;CL:0000244!1.12e-07!4;CL:0000731!1.12e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:1000507;6.82e-14;10!CL:1000494;6.82e-14;10!CL:0000239;4.29e-13;3!CL:1000615;4.29e-13;3!CL:0002306;4.29e-13;3!CL:1000449;4.12e-12;15!CL:0002681;1.80e-11;12!CL:0002584;1.80e-11;12!CL:1000497;1.43e-10;17!CL:0002518;1.43e-10;17!CL:0000349;1.55e-09;19!CL:0000244;2.75e-09;4!CL:0000731;2.75e-09;4!CL:0002536;1.03e-08;2!CL:0000575;1.03e-08;2!CL:0002537;3.83e-08;5!CL:0002368;3.12e-07;13!CL:0002202;4.89e-07;9!CL:0002632;4.89e-07;9!CL:0002159;8.42e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.43e-19,253;CL:1000507,1.12e-13,10;CL:1000494,1.12e-13,10;CL:0000239,5.08e-13,3;CL:1000615,5.08e-13,3;CL:0002306,5.08e-13,3;CL:1000449,5.89e-12,15;CL:0002681,2.32e-11,12;CL:0002584,2.32e-11,12;CL:1000497,1.95e-10,17;CL:0002518,1.95e-10,17;CL:0000244,1.18e-09,4;CL:0000731,1.18e-09,4;CL:0000349,1.39e-09,19;CL:0000575,5.26e-09,2;CL:0002536,1.21e-08,2;CL:0002537,3.37e-08,5;CL:0002076,1.24e-07,42;CL:0002368,3.46e-07,13;CL:0002202,4.83e-07,9;CL:0002632,4.83e-07,9;CL:0002159,4.87e-07,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.73e-13!106;DOID:0050687!1.38e-10!143;DOID:1749!1.75e-09!14 | |ontology_enrichment_disease=DOID:305!1.73e-13!106;DOID:0050687!1.38e-10!143;DOID:1749!1.75e-09!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.07e-17!169;UBERON:0000925!1.07e-17!169;UBERON:0006595!1.07e-17!169;UBERON:0005153!1.33e-13!37;UBERON:0005631!2.22e-13!14;UBERON:0000158!2.22e-13!14;UBERON:0005911!1.49e-12!82;UBERON:0001007!5.06e-11!155;UBERON:0001555!5.06e-11!155;UBERON:0007026!5.06e-11!155;UBERON:0005157!1.17e-10!51;UBERON:0005178!1.33e-10!34;UBERON:0002224!1.33e-10!34;UBERON:0000077!1.53e-10!130;UBERON:0006554!3.12e-10!44;UBERON:0005181!3.64e-10!35;UBERON:0001008!6.97e-10!45;UBERON:0007196!7.96e-10!14;UBERON:0001558!7.96e-10!14;UBERON:0001004!9.01e-10!72;UBERON:0000065!1.53e-09!53;UBERON:0004807!1.87e-09!28;UBERON:0000464!1.91e-09!104;UBERON:0000466!2.10e-09!126;UBERON:0004802!2.56e-09!19;UBERON:0000115!2.56e-09!19;UBERON:0004921!5.11e-09!129;UBERON:0004185!5.11e-09!129;UBERON:0005177!8.79e-09!107;UBERON:0008947!9.14e-09!38;UBERON:0003258!9.14e-09!38;UBERON:0000365!1.21e-08!5;UBERON:0003124!3.09e-08!7;UBERON:0000915!6.17e-08!52;UBERON:0000064!6.79e-08!219;UBERON:0002048!1.15e-07!22;UBERON:0000117!1.15e-07!22;UBERON:0000171!1.15e-07!22;UBERON:0000170!1.15e-07!22;UBERON:0005597!1.15e-07!22;UBERON:0000118!1.15e-07!22;UBERON:0000072!2.21e-07!46;UBERON:0009569!2.71e-07!113;UBERON:0005910!4.16e-07!6;UBERON:0000058!8.11e-07!26;UBERON:0000305!8.54e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.10e-14;7!UBERON:0005631;3.35e-14;10!UBERON:0000158;3.35e-14;10!UBERON:0004211;6.82e-14;10!UBERON:0009773;6.82e-14;10!UBERON:0001231;6.82e-14;10!UBERON:0004810;6.82e-14;10!UBERON:0006853;4.29e-13;3!UBERON:0007685;4.29e-13;3!UBERON:0004134;4.29e-13;3!UBERON:0006555;4.12e-12;15!UBERON:0004819;4.12e-12;15!UBERON:0001285;4.12e-12;15!UBERON:0007684;4.12e-12;15!UBERON:0001225;1.80e-11;12!UBERON:0008987;1.80e-11;12!UBERON:0006554;3.22e-11;30!UBERON:0001008;3.22e-11;30!UBERON:0001851;4.78e-09;15!UBERON:0000353;4.78e-09;15!UBERON:0000486;3.65e-08;12!UBERON:0000365;1.63e-07;5!UBERON:0000478;2.41e-07;24!UBERON:0002113;3.31e-07;24!UBERON:0011143;3.31e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,2.03e-14,7;UBERON:0004810,1.12e-13,10;UBERON:0005631,2.29e-13,14;UBERON:0000158,2.29e-13,14;UBERON:0006554,2.95e-13,47;UBERON:0006853,5.08e-13,3;UBERON:0007685,5.08e-13,3;UBERON:0004134,5.08e-13,3;UBERON:0001008,6.47e-13,48;UBERON:0004871,1.40e-12,8;UBERON:0004211,5.89e-12,15;UBERON:0009773,5.89e-12,15;UBERON:0001231,5.89e-12,15;UBERON:0001285,5.89e-12,15;UBERON:0007684,5.89e-12,15;UBERON:0004208,5.89e-12,15;UBERON:0001225,2.32e-11,12;UBERON:0008987,2.32e-11,12;UBERON:0006555,3.78e-11,16;UBERON:0004819,3.78e-11,16;UBERON:0001851,5.83e-09,15;UBERON:0000353,5.83e-09,15;UBERON:0000365,8.34e-08,5;UBERON:0000478,2.22e-07,24 | |||
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| ||
|short_description=p@chr19:39329315..39329338,- | |short_description=p@chr19:39329315..39329338,- | ||
}} | }} |
Latest revision as of 07:24, 26 July 2015
Short description: | p@chr19:39329315..39329338, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:39329315..39329338, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.43e-19 | 253 |
kidney tubule cell | 1.12e-13 | 10 |
nephron tubule epithelial cell | 1.12e-13 | 10 |
brush border epithelial cell | 5.08e-13 | 3 |
kidney cortex tubule cell | 5.08e-13 | 3 |
epithelial cell of proximal tubule | 5.08e-13 | 3 |
epithelial cell of nephron | 5.89e-12 | 15 |
kidney cortical cell | 2.32e-11 | 12 |
renal cortical epithelial cell | 2.32e-11 | 12 |
kidney cell | 1.95e-10 | 17 |
kidney epithelial cell | 1.95e-10 | 17 |
transitional epithelial cell | 1.18e-09 | 4 |
urothelial cell | 1.18e-09 | 4 |
extraembryonic cell | 1.39e-09 | 19 |
corneal epithelial cell | 5.26e-09 | 2 |
amniotic epithelial cell | 1.21e-08 | 2 |
amnion mesenchymal stem cell | 3.37e-08 | 5 |
endo-epithelial cell | 1.24e-07 | 42 |
respiratory epithelial cell | 3.46e-07 | 13 |
epithelial cell of tracheobronchial tree | 4.83e-07 | 9 |
epithelial cell of lower respiratory tract | 4.83e-07 | 9 |
general ecto-epithelial cell | 4.87e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
amnion | 2.03e-14 | 7 |
nephron tubule epithelium | 1.12e-13 | 10 |
extraembryonic membrane | 2.29e-13 | 14 |
membranous layer | 2.29e-13 | 14 |
urinary system structure | 2.95e-13 | 47 |
renal cortex tubule | 5.08e-13 | 3 |
region of nephron tubule | 5.08e-13 | 3 |
proximal tubule | 5.08e-13 | 3 |
renal system | 6.47e-13 | 48 |
somatic layer of lateral plate mesoderm | 1.40e-12 | 8 |
nephron epithelium | 5.89e-12 | 15 |
renal tubule | 5.89e-12 | 15 |
nephron tubule | 5.89e-12 | 15 |
nephron | 5.89e-12 | 15 |
uriniferous tubule | 5.89e-12 | 15 |
nephrogenic mesenchyme | 5.89e-12 | 15 |
cortex of kidney | 2.32e-11 | 12 |
renal parenchyma | 2.32e-11 | 12 |
excretory tube | 3.78e-11 | 16 |
kidney epithelium | 3.78e-11 | 16 |
cortex | 5.83e-09 | 15 |
parenchyma | 5.83e-09 | 15 |
urothelium | 8.34e-08 | 5 |
extraembryonic structure | 2.22e-07 | 24 |