FFCP PHASE1:Hg19::chr2:176987441..176987454,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3235 | |EntrezGene=3235 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5140 | |HGNC=5140 | ||
|TSSclassifier=strong | |||
|UniProt=P28356 | |UniProt=P28356 | ||
|association_with_transcript=28bp_to_NM_014213,uc010zex.1_5end | |association_with_transcript=28bp_to_NM_014213,uc010zex.1_5end | ||
|cluster_id=chr2:176987441..176987454,+ | |||
|coexpression_cluster_id=C4149 | |||
|description=CAGE_peak_1_at_HOXD9_5end | |description=CAGE_peak_1_at_HOXD9_5end | ||
|id=chr2:176987441..176987454,+ | |id=chr2:176987441..176987454,+ | ||
|ontology_enrichment_celltype=CL:1000497!3.08e-10!18;CL:0002518!3.08e-10!18;CL:0002139!3.14e-09!24;CL:1000449!3.50e-09!16;CL:0002078!1.17e-08!44;CL:1000507!3.94e-08!12;CL:1000494!3.94e-08!12;CL:0002681!4.80e-07!13;CL:0002584!4.80e-07!13;CL:0002620!5.75e-07!23;CL:0000115!8.12e-07!35 | |ontology_enrichment_celltype=CL:1000497!3.08e-10!18;CL:0002518!3.08e-10!18;CL:0002139!3.14e-09!24;CL:1000449!3.50e-09!16;CL:0002078!1.17e-08!44;CL:1000507!3.94e-08!12;CL:1000494!3.94e-08!12;CL:0002681!4.80e-07!13;CL:0002584!4.80e-07!13;CL:0002620!5.75e-07!23;CL:0000115!8.12e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.46e-16;17!CL:0002518;2.46e-16;17!CL:1000449;1.54e-14;15!CL:1000507;1.84e-13;10!CL:1000494;1.84e-13;10!CL:0002681;5.22e-11;12!CL:0002584;5.22e-11;12!CL:0002139;8.87e-10;24!CL:0002138;2.70e-09;6!CL:0002078;7.46e-09;45!CL:0000115;5.67e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,6.28e-16,17;CL:0002518,6.28e-16,17;CL:1000449,3.19e-14,15;CL:1000507,3.56e-13,10;CL:1000494,3.56e-13,10;CL:0002078,5.78e-11,45;CL:0002681,1.01e-10,12;CL:0002584,1.01e-10,12;CL:0002139,9.75e-10,24;CL:0005020,4.39e-09,6;CL:0002138,4.39e-09,6;CL:0005022,4.39e-09,6;CL:0000115,2.35e-08,36 | |||
|ontology_enrichment_development_v019=CL:0005022;2.70e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.70e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.49e-08,143;DOID:171,7.48e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0003887!8.96e-11!21;UBERON:0000080!9.82e-11!18;UBERON:0002120!9.82e-11!18;UBERON:0004875!9.82e-11!18;UBERON:0005721!9.82e-11!18;UBERON:0005754!9.82e-11!18;UBERON:0007297!9.82e-11!18;UBERON:0002113!1.45e-10!27;UBERON:0003918!1.45e-10!27;UBERON:0005095!1.45e-10!27;UBERON:0007687!1.45e-10!27;UBERON:0004876!1.71e-10!20;UBERON:0000489!2.51e-10!32;UBERON:0006555!6.68e-10!17;UBERON:0005103!6.68e-10!17;UBERON:0000083!6.68e-10!17;UBERON:0009201!6.68e-10!17;UBERON:0004819!6.68e-10!17;UBERON:0006553!6.68e-10!17;UBERON:0003074!6.68e-10!17;UBERON:0003060!6.68e-10!17;UBERON:0004211!3.50e-09!16;UBERON:0001285!3.50e-09!16;UBERON:0007684!3.50e-09!16;UBERON:0003220!3.50e-09!16;UBERON:0004208!3.50e-09!16;UBERON:0002465!3.25e-08!10;UBERON:0009773!3.94e-08!12;UBERON:0001231!3.94e-08!12;UBERON:0004810!3.94e-08!12;UBERON:0001473!5.14e-08!8;UBERON:0004536!5.14e-08!8;UBERON:0006558!5.14e-08!8;UBERON:0003886!6.98e-08!63;UBERON:0002199!1.06e-07!45;UBERON:0002416!1.06e-07!45;UBERON:0003133!1.23e-07!48;UBERON:0001737!2.60e-07!9;UBERON:0003064!4.19e-07!37;UBERON:0001225!4.80e-07!13;UBERON:0008987!4.80e-07!13;UBERON:0001013!6.21e-07!14;UBERON:0001008!8.44e-07!45;UBERON:0000058!9.69e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.54e-14;15!UBERON:0004819;1.54e-14;15!UBERON:0001285;1.54e-14;15!UBERON:0007684;1.54e-14;15!UBERON:0002113;5.97e-14;24!UBERON:0011143;5.97e-14;24!UBERON:0004211;1.84e-13;10!UBERON:0009773;1.84e-13;10!UBERON:0001231;1.84e-13;10!UBERON:0004810;1.84e-13;10!UBERON:0001473;3.24e-12;8!UBERON:0004536;3.24e-12;8!UBERON:0006558;3.24e-12;8!UBERON:0000489;5.11e-12;29!UBERON:0001225;5.22e-11;12!UBERON:0008987;5.22e-11;12!UBERON:0001737;2.72e-10;9!UBERON:0001557;2.72e-10;9!UBERON:0006554;3.68e-10;30!UBERON:0001008;3.68e-10;30!UBERON:0002465;2.24e-09;10!UBERON:0001851;2.69e-08;15!UBERON:0000353;2.69e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,5.28e-16,26;UBERON:0003918,5.28e-16,26;UBERON:0011143,5.28e-16,26;UBERON:0005095,5.28e-16,26;UBERON:0007687,5.28e-16,26;UBERON:0006555,2.13e-15,16;UBERON:0004819,2.13e-15,16;UBERON:0004211,3.19e-14,15;UBERON:0009773,3.19e-14,15;UBERON:0001231,3.19e-14,15;UBERON:0001285,3.19e-14,15;UBERON:0007684,3.19e-14,15;UBERON:0004208,3.19e-14,15;UBERON:0000489,7.03e-14,31;UBERON:0004810,3.56e-13,10;UBERON:0001473,5.37e-12,8;UBERON:0004536,5.37e-12,8;UBERON:0006558,5.37e-12,8;UBERON:0001737,7.32e-11,9;UBERON:0001225,1.01e-10,12;UBERON:0008987,1.01e-10,12;UBERON:0002465,3.30e-09,10;UBERON:0001851,4.44e-08,15;UBERON:0000353,4.44e-08,15;UBERON:0001008,5.55e-08,48;UBERON:0004876,1.43e-07,11;UBERON:0000080,1.84e-07,9;UBERON:0002120,1.84e-07,9;UBERON:0004875,1.84e-07,9;UBERON:0005721,1.84e-07,9;UBERON:0005754,1.84e-07,9;UBERON:0007297,1.84e-07,9;UBERON:0006554,2.44e-07,47 | |||
|phase1_expression=1.45342703416445,1.07050261945492,0,2.00146596706261,0,0.872338524100369,2.53299878168311,0,0.783556884599516,0,0,0,0,0.37129905888014,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,1.59331170856906,0,0.973269740605272,0,0,0,2.75056058545197,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,4.13466814670926,1.06729878806013,5.02080919147005,6.0424397566372,3.80136052859256,12.4471649349566,2.94130464276695,3.24056779152704,1.60739510911344,0.44905874525234,0.450445921933289,4.5994991239765,0.949265659568129,2.01521918323448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,1.17434498643765,0.647491777472526,0.421352420106746,0,0,0,0,0,5.46096817162816,4.31170885089743,0,0,0,0,0,0,0,1.25572744982203,1.49490172172997,0.847727604638247,1.20036438433761,1.23663035086127,2.31876486041066,2.04728541964749,0.168776332241266,1.36411807225678,0.757301322732344,1.93304787148829,0,0.355009592516614,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0,0,0,4.69348596989448,3.21620469096443,0,1.39310378409594,1.44375896333917,1.18306800039844,1.51726221070292,2.6511213287183,1.65440959098591,1.96091499683166,2.60997681022206,1.75280700608214,1.96221465125346,1.15424147083917,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7429625074604,4.62985512576611,2.28304982681518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0.253991577168676,0.763976851116555,0,1.71072446022705,0.102827492703324,0,0.857479297891735,0,0,0,0.129271715757778,10.7296933755565,1.690605505112,0.797814349754612,0,0,0,1.0656887160644,0,1.08524321078289,0,0.977208552881205,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0,0,0,0,0,1.50473049863859,0,0,1.32845119707087,0.921845842708516,0,0,0,0,0,0,0,0,0,1.73675465473144,0.767309866440312,2.80660094433074,0.128139149255701,0.511707249066704,0,1.48418066444991,0.308419387605311,1.06537035187876,0.246381468041427,0,0.232420756919918,0.241718899183244,0,0,0,0,0,2.25599806453706,1.46329140498388,10.980896768476,2.92278449306521,1.16106791782163,6.8240030442538,1.19065593693561,0.431831832204279,10.7959076883203,2.70946437543853,1.00337954770971,3.3133915495855,4.15538004464362,2.23874754722178,0,0,0,0,0,0.515205058238611,2.47237555009527,1.07262349896764,0,0,0,1.06337790121334,0.308097234229289,0.460511024178389,0.275673144969061,0.429680979473094,0.580066775656914,0.340906509664404,1.06838442776085,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0.54907405947211,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0.0982490410131212,0,0.354761064070598,2.53329162357197,2.30506425071931,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.828851746593443,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,6.52499617891314,0,0,6.14607972596635,5.8606373451049,3.79085997398231,1.04174996959975,0,0,0,0,0,0,0,0,4.30921447621264,0,0.23056390438806,1.07709173291727,4.67183699264635,0.638002319463839,1.37396390102793,0.533034776018635,0,0,0,0,0,0,0,0,2.74297483886435,0.326465616318295,0,0.216388639742091,2.98578579323551,1.76915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,3.55125962564451,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0.853828638089378,0,1.21491816834592,0,1.13176968554523,2.44617335538842,2.23581842213102,1.54810130062536,1.68105429298227,1.14961639874493,0.290967049465258,3.26547668758551,0.677942222341597,0.685209623233754,0.19871461170299,0,0.391102765469606,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,1.39775300349294,0,0,0.201550417460179,0,0,0,0,0,0.688992370603241,0,0,0,0,0,0,0,0,0,0,2.99461687736953,10.0712809219196,0,0,0,0,0,0,0.542999601753713,0,1.30634944043764,0,0,0,1.58636928128176,0,0,0,0,0,0,0,0.314408610199332,0,0.496166021811951,0,0,1.27668251554036,0,1.0027595760908,0.306345576763462,0.655745261419609,0,0,0,0,0,0.110929051536852,0,0,0,1.36484205787483,0,0,0.468334905806882,2.8984205722165,0.298509605773748,0.701139929541673,2.21922344601045,0.189403005275089,0,0,0,0,0,0,0.63718706865481,0.449803112163605,0.155262956876259,0.414706207840855,0,2.60872530905867,0.150257608997218,0.380805212168795,0,0,0.322231671127465,1.39210127963548,1.99047944349308,0,0.343395705182793,0.673498977531838,0,0,0,0,0,0,2.69210374957114,0,0.617602894321944,0,0,0,0,0.512483037175893,0,0.911579868532147,0,0,0,0,0,0,1.05656061679314,0,0,0,0,2.39337735327393,0,0,2.68578179737669,1.1860729253635,15.5693282437337,2.40261204022431,0,4.46407332213534,4.08988022054707,0.558644917973244,0,0,3.20228299314188,0,0,0.0642292250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| ||
|short_description=p1@HOXD9 | |short_description=p1@HOXD9 | ||
}} | }} |
Latest revision as of 09:01, 18 September 2015
Short description: | p1@HOXD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXD9_5end |
Coexpression cluster: | C4149_neuroblastoma_kidney_Endothelial_uterus_Renal_smallcell_bronchogenic |
Association with transcript: | 28bp_to_NM_014213, uc010zex.1_5end |
EntrezGene: | HOXD9 |
HGNC: | 5140 |
UniProt: | P28356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 6.28e-16 | 17 |
kidney epithelial cell | 6.28e-16 | 17 |
epithelial cell of nephron | 3.19e-14 | 15 |
kidney tubule cell | 3.56e-13 | 10 |
nephron tubule epithelial cell | 3.56e-13 | 10 |
meso-epithelial cell | 5.78e-11 | 45 |
kidney cortical cell | 1.01e-10 | 12 |
renal cortical epithelial cell | 1.01e-10 | 12 |
endothelial cell of vascular tree | 9.75e-10 | 24 |
lymphangioblast | 4.39e-09 | 6 |
endothelial cell of lymphatic vessel | 4.39e-09 | 6 |
vascular lymphangioblast | 4.39e-09 | 6 |
endothelial cell | 2.35e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
kidney | 5.28e-16 | 26 |
kidney mesenchyme | 5.28e-16 | 26 |
upper urinary tract | 5.28e-16 | 26 |
kidney rudiment | 5.28e-16 | 26 |
kidney field | 5.28e-16 | 26 |
excretory tube | 2.13e-15 | 16 |
kidney epithelium | 2.13e-15 | 16 |
nephron epithelium | 3.19e-14 | 15 |
renal tubule | 3.19e-14 | 15 |
nephron tubule | 3.19e-14 | 15 |
nephron | 3.19e-14 | 15 |
uriniferous tubule | 3.19e-14 | 15 |
nephrogenic mesenchyme | 3.19e-14 | 15 |
cavitated compound organ | 7.03e-14 | 31 |
nephron tubule epithelium | 3.56e-13 | 10 |
lymphatic vessel | 5.37e-12 | 8 |
lymph vasculature | 5.37e-12 | 8 |
lymphatic part of lymphoid system | 5.37e-12 | 8 |
larynx | 7.32e-11 | 9 |
cortex of kidney | 1.01e-10 | 12 |
renal parenchyma | 1.01e-10 | 12 |
lymphoid system | 3.30e-09 | 10 |
cortex | 4.44e-08 | 15 |
parenchyma | 4.44e-08 | 15 |
renal system | 5.55e-08 | 48 |
urogenital ridge | 1.43e-07 | 11 |
mesonephros | 1.84e-07 | 9 |
pronephros | 1.84e-07 | 9 |
nephrogenic cord | 1.84e-07 | 9 |
pronephric mesoderm | 1.84e-07 | 9 |
rostral part of nephrogenic cord | 1.84e-07 | 9 |
presumptive pronephric mesoderm | 1.84e-07 | 9 |
urinary system structure | 2.44e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.49e-08 | 143 |
neuroectodermal tumor | 7.48e-07 | 10 |