FFCP PHASE1:Hg19::chr1:35246775..35246797,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2707 | |EntrezGene=2707 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4285 | |HGNC=4285 | ||
|TSSclassifier=strong | |||
|UniProt=O75712 | |UniProt=O75712 | ||
|association_with_transcript=0bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | |association_with_transcript=0bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | ||
|cluster_id=chr1:35246775..35246797,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_2_at_GJB3_5end | |description=CAGE_peak_2_at_GJB3_5end | ||
|id=chr1:35246775..35246797,+ | |id=chr1:35246775..35246797,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.25e-46!254;CL:0002076!2.76e-27!43;CL:0000223!4.97e-21!59;CL:0002368!5.03e-12!13;CL:0002251!1.02e-11!21;CL:0002159!1.06e-08!13;CL:0002202!3.09e-08!9;CL:0002632!3.09e-08!9;CL:1000507!4.93e-08!12;CL:1000494!4.93e-08!12;CL:1000449!9.31e-07!16 | |ontology_enrichment_celltype=CL:0000066!1.25e-46!254;CL:0002076!2.76e-27!43;CL:0000223!4.97e-21!59;CL:0002368!5.03e-12!13;CL:0002251!1.02e-11!21;CL:0002159!1.06e-08!13;CL:0002202!3.09e-08!9;CL:0002632!3.09e-08!9;CL:1000507!4.93e-08!12;CL:1000494!4.93e-08!12;CL:1000449!9.31e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.64e-23;42!CL:0002251;4.67e-16;20!CL:0002368;1.40e-14;13!CL:1000507;4.78e-14;10!CL:1000494;4.78e-14;10!CL:0002159;2.58e-11;14!CL:1000449;1.02e-10;15!CL:0000349;7.60e-10;19!CL:0002202;2.98e-09;9!CL:0002632;2.98e-09;9!CL:1000497;3.84e-09;17!CL:0002518;3.84e-09;17!CL:0000244;1.88e-08;4!CL:0000731;1.88e-08;4!CL:0000622;7.75e-08;5!CL:0002681;2.47e-07;12!CL:0002584;2.47e-07;12!CL:0002577;8.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.24e-54,253;CL:0002076,5.08e-33,42;CL:0000223,3.84e-24,58;CL:0002251,5.02e-16,20;CL:0002368,1.47e-14,13;CL:1000507,5.61e-14,10;CL:1000494,5.61e-14,10;CL:0002159,2.43e-11,14;CL:1000449,1.17e-10,15;CL:0000349,7.85e-10,19;CL:0002202,3.07e-09,9;CL:0002632,3.07e-09,9;CL:1000497,4.29e-09,17;CL:0002518,4.29e-09,17;CL:0000244,1.85e-08,4;CL:0000731,1.85e-08,4;CL:0000622,7.81e-08,5;CL:0002681,2.89e-07,12;CL:0002584,2.89e-07,12;CL:0000076,5.97e-07,63;CL:0002577,8.96e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.09e-12;58 | |||
|ontology_enrichment_disease=DOID:305!1.62e-24!106;DOID:0050687!2.16e-15!143;DOID:1749!4.33e-12!14;DOID:299!1.02e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.85e-17;14!DOID:299;2.60e-12;25!DOID:305;6.65e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.01e-25,106;DOID:1749,6.72e-17,14;DOID:0050687,5.96e-16,143;DOID:299,2.03e-12,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.05e-26!169;UBERON:0000925!9.05e-26!169;UBERON:0006595!9.05e-26!169;UBERON:0001004!1.47e-18!72;UBERON:0001007!2.03e-17!155;UBERON:0001555!2.03e-17!155;UBERON:0007026!2.03e-17!155;UBERON:0000077!2.29e-16!130;UBERON:0000065!3.49e-16!53;UBERON:0008947!2.10e-13!38;UBERON:0003258!2.10e-13!38;UBERON:0006554!5.43e-13!44;UBERON:0004921!6.48e-13!129;UBERON:0004185!6.48e-13!129;UBERON:0000072!8.56e-13!46;UBERON:0001008!1.70e-12!45;UBERON:0005631!7.09e-12!14;UBERON:0000158!7.09e-12!14;UBERON:0000464!5.44e-11!104;UBERON:0000064!6.62e-11!219;UBERON:0001041!3.07e-10!98;UBERON:0003064!3.24e-10!37;UBERON:0000161!3.80e-10!35;UBERON:0005911!5.26e-10!82;UBERON:0000062!1.19e-09!511;UBERON:0005153!2.12e-09!37;UBERON:0003124!5.36e-09!7;UBERON:0000466!5.59e-09!126;UBERON:0005157!1.47e-08!51;UBERON:0001737!2.24e-08!9;UBERON:0000058!3.49e-08!26;UBERON:0009773!4.93e-08!12;UBERON:0001231!4.93e-08!12;UBERON:0004810!4.93e-08!12;UBERON:0005156!5.14e-08!59;UBERON:0000990!5.14e-08!59;UBERON:0003104!8.78e-08!238;UBERON:0009142!8.78e-08!238;UBERON:0000080!8.94e-08!18;UBERON:0002120!8.94e-08!18;UBERON:0004875!8.94e-08!18;UBERON:0005721!8.94e-08!18;UBERON:0005754!8.94e-08!18;UBERON:0007297!8.94e-08!18;UBERON:0005178!9.29e-08!34;UBERON:0002224!9.29e-08!34;UBERON:0005177!1.13e-07!107;UBERON:0004876!1.13e-07!20;UBERON:0005910!1.20e-07!6;UBERON:0001557!1.81e-07!19;UBERON:0005181!2.25e-07!35;UBERON:0006555!2.77e-07!17;UBERON:0005103!2.77e-07!17;UBERON:0000083!2.77e-07!17;UBERON:0009201!2.77e-07!17;UBERON:0004819!2.77e-07!17;UBERON:0006553!2.77e-07!17;UBERON:0003074!2.77e-07!17;UBERON:0003060!2.77e-07!17;UBERON:0000365!3.06e-07!5;UBERON:0000995!4.87e-07!21;UBERON:0004175!5.05e-07!25;UBERON:0000166!5.41e-07!21;UBERON:0000922!5.58e-07!612;UBERON:0000468!5.99e-07!659;UBERON:0007196!6.56e-07!14;UBERON:0001558!6.56e-07!14;UBERON:0004211!9.31e-07!16;UBERON:0001285!9.31e-07!16;UBERON:0007684!9.31e-07!16;UBERON:0003220!9.31e-07!16;UBERON:0004208!9.31e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.78e-14;10!UBERON:0009773;4.78e-14;10!UBERON:0001231;4.78e-14;10!UBERON:0004810;4.78e-14;10!UBERON:0006554;1.06e-11;30!UBERON:0001008;1.06e-11;30!UBERON:0001737;2.88e-11;9!UBERON:0001557;2.88e-11;9!UBERON:0000065;4.92e-11;44!UBERON:0005631;5.60e-11;10!UBERON:0000158;5.60e-11;10!UBERON:0006555;1.02e-10;15!UBERON:0004819;1.02e-10;15!UBERON:0001285;1.02e-10;15!UBERON:0007684;1.02e-10;15!UBERON:0000072;1.37e-10;37!UBERON:0001004;6.20e-10;65!UBERON:0000365;1.05e-09;5!UBERON:0000486;6.90e-09;12!UBERON:0000478;2.09e-08;24!UBERON:0005910;5.78e-08;6!UBERON:0001987;1.02e-07;4!UBERON:0000344;1.26e-07;20!UBERON:0000161;1.35e-07;19!UBERON:0000166;1.35e-07;19!UBERON:0000165;1.86e-07;28!UBERON:0001225;2.47e-07;12!UBERON:0008987;2.47e-07;12!UBERON:0003729;5.64e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.38e-24,160;UBERON:0000925,1.38e-24,160;UBERON:0006595,1.38e-24,160;UBERON:0001004,2.47e-18,74;UBERON:0005631,7.97e-17,14;UBERON:0000158,7.97e-17,14;UBERON:0006554,1.65e-15,47;UBERON:0001007,1.96e-15,145;UBERON:0001555,1.96e-15,145;UBERON:0007026,1.96e-15,145;UBERON:0001008,4.98e-15,48;UBERON:0000065,7.29e-15,54;UBERON:0004810,5.61e-14,10;UBERON:0000072,2.26e-12,47;UBERON:0004921,2.60e-12,118;UBERON:0003124,3.15e-12,7;UBERON:0001041,1.59e-11,87;UBERON:0008947,2.23e-11,38;UBERON:0003258,2.23e-11,38;UBERON:0001737,2.45e-11,9;UBERON:0004211,1.17e-10,15;UBERON:0009773,1.17e-10,15;UBERON:0001231,1.17e-10,15;UBERON:0001285,1.17e-10,15;UBERON:0007684,1.17e-10,15;UBERON:0004208,1.17e-10,15;UBERON:0000161,1.72e-10,36;UBERON:0006555,7.94e-10,16;UBERON:0004819,7.94e-10,16;UBERON:0000365,1.03e-09,5;UBERON:0001557,1.37e-09,19;UBERON:0000166,1.20e-08,22;UBERON:0000478,2.16e-08,24;UBERON:0005910,5.66e-08,6;UBERON:0001987,1.06e-07,4;UBERON:0004340,1.06e-07,4;UBERON:0000344,1.28e-07,20;UBERON:0004923,1.44e-07,66;UBERON:0001225,2.89e-07,12;UBERON:0008987,2.89e-07,12;UBERON:0003102,2.92e-07,99;UBERON:0000165,4.75e-07,29;UBERON:0000930,4.75e-07,29;UBERON:0003729,5.52e-07,13 | |||
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| ||
|short_description=p2@GJB3 | |short_description=p2@GJB3 | ||
}} | }} |
Latest revision as of 17:48, 17 September 2015
Short description: | p2@GJB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GJB3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000373366, NM_024009, uc001bxx.2_5end |
EntrezGene: | GJB3 |
HGNC: | 4285 |
UniProt: | O75712 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.24e-54 | 253 |
endo-epithelial cell | 5.08e-33 | 42 |
endodermal cell | 3.84e-24 | 58 |
epithelial cell of alimentary canal | 5.02e-16 | 20 |
respiratory epithelial cell | 1.47e-14 | 13 |
kidney tubule cell | 5.61e-14 | 10 |
nephron tubule epithelial cell | 5.61e-14 | 10 |
general ecto-epithelial cell | 2.43e-11 | 14 |
epithelial cell of nephron | 1.17e-10 | 15 |
extraembryonic cell | 7.85e-10 | 19 |
epithelial cell of tracheobronchial tree | 3.07e-09 | 9 |
epithelial cell of lower respiratory tract | 3.07e-09 | 9 |
kidney cell | 4.29e-09 | 17 |
kidney epithelial cell | 4.29e-09 | 17 |
transitional epithelial cell | 1.85e-08 | 4 |
urothelial cell | 1.85e-08 | 4 |
acinar cell | 7.81e-08 | 5 |
kidney cortical cell | 2.89e-07 | 12 |
renal cortical epithelial cell | 2.89e-07 | 12 |
squamous epithelial cell | 5.97e-07 | 63 |
placental epithelial cell | 8.96e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.01e-25 | 106 |
squamous cell carcinoma | 6.72e-17 | 14 |
cell type cancer | 5.96e-16 | 143 |
adenocarcinoma | 2.03e-12 | 25 |