FFCP PHASE1:Hg19::chr19:48325184..48325211,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1406 | |EntrezGene=1406 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2383 | |HGNC=2383 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000556527_5end | |association_with_transcript=0bp_to_ENST00000556527_5end | ||
|cluster_id=chr19:48325184..48325211,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_1_at_CRX_5end | |description=CAGE_peak_1_at_CRX_5end | ||
|id=chr19:48325184..48325211,+ | |id=chr19:48325184..48325211,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.42e-24!5;CL:0002586!1.53e-15!3;CL:0000147!3.01e-12!14;CL:0000149!8.86e-12!4;CL:0000064!3.53e-07!3;CL:0005012!3.53e-07!3;CL:0000067!3.53e-07!3;CL:0002304!3.53e-07!3 | |ontology_enrichment_celltype=CL:0002322!1.42e-24!5;CL:0002586!1.53e-15!3;CL:0000147!3.01e-12!14;CL:0000149!8.86e-12!4;CL:0000064!3.53e-07!3;CL:0005012!3.53e-07!3;CL:0000067!3.53e-07!3;CL:0002304!3.53e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;5.84e-33;5!CL:0000147;1.99e-18;14!CL:0002586;5.89e-15;3!CL:0000149;1.87e-11;4!CL:0002321;3.38e-11;15!CL:0000148;7.40e-10;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,5.84e-33,5;CL:0000147,1.95e-18,14;CL:0002586,6.10e-15,3;CL:0000149,1.92e-11,4;CL:0000148,7.18e-10,10;CL:0000541,7.18e-10,10 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.60e-15;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!3.60e-25!5;UBERON:0005388!3.60e-25!5;UBERON:0001802!3.60e-25!5;UBERON:0000970!1.17e-18!20;UBERON:0002104!1.08e-17!21;UBERON:0005743!1.86e-17!86;UBERON:0002346!1.07e-16!90;UBERON:0000020!5.18e-16!23;UBERON:0003075!7.98e-16!86;UBERON:0007284!7.98e-16!86;UBERON:0001781!1.53e-15!3;UBERON:0001782!1.53e-15!3;UBERON:0005424!1.53e-15!3;UBERON:0007625!1.73e-15!11;UBERON:0000019!1.77e-15!19;UBERON:0000047!1.77e-15!19;UBERON:0004088!1.77e-15!19;UBERON:0003072!1.77e-15!19;UBERON:0003071!1.77e-15!19;UBERON:0004128!1.77e-15!19;UBERON:0000073!2.06e-15!94;UBERON:0001016!2.06e-15!94;UBERON:0001896!2.50e-15!3;UBERON:0005290!2.50e-15!3;UBERON:0010096!2.50e-15!3;UBERON:0001032!2.81e-15!24;UBERON:0004456!2.81e-15!24;UBERON:0002298!6.42e-15!8;UBERON:0001456!6.99e-14!21;UBERON:0001905!1.64e-11!2;UBERON:0002757!1.64e-11!2;UBERON:0010134!1.64e-11!2;UBERON:0002784!1.64e-11!2;UBERON:0005408!1.64e-11!2;UBERON:0001899!1.64e-11!2;UBERON:0001017!4.01e-11!82;UBERON:0003056!1.54e-10!61;UBERON:0000924!2.33e-10!173;UBERON:0006601!2.33e-10!173;UBERON:0000033!9.42e-10!123;UBERON:0005085!1.07e-09!29;UBERON:0004121!1.14e-09!169;UBERON:0000153!4.08e-09!129;UBERON:0007811!4.08e-09!129;UBERON:0000063!4.81e-08!97;UBERON:0003076!7.34e-08!15;UBERON:0003057!7.34e-08!15;UBERON:0000955!1.96e-07!69;UBERON:0006238!1.96e-07!69;UBERON:0006331!3.21e-07!3;UBERON:0001778!3.53e-07!3;UBERON:0001775!3.53e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.10e-34;5!UBERON:0005388;4.10e-34;5!UBERON:0001802;4.10e-34;5!UBERON:0001905;1.08e-22;2!UBERON:0002757;1.08e-22;2!UBERON:0010134;1.08e-22;2!UBERON:0005408;1.08e-22;2!UBERON:0001899;1.08e-22;2!UBERON:0000970;8.75e-19;20!UBERON:0002104;7.12e-18;21!UBERON:0000020;2.73e-16;23!UBERON:0001032;1.35e-15;24!UBERON:0004456;1.35e-15;24!UBERON:0001781;5.89e-15;3!UBERON:0001782;5.89e-15;3!UBERON:0001896;1.19e-14;3!UBERON:0005290;1.19e-14;3!UBERON:0000019;7.11e-14;19!UBERON:0000047;7.11e-14;19!UBERON:0004088;7.11e-14;19!UBERON:0010230;7.11e-14;19!UBERON:0001456;1.52e-12;21!UBERON:0003296;7.77e-12;4!UBERON:0010133;7.77e-12;4!UBERON:0002784;7.77e-12;4!UBERON:0007625;3.48e-09;11!UBERON:0002298;8.86e-08;6!UBERON:0001894;3.96e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.76e-28,6;UBERON:0005388,1.76e-28,6;UBERON:0001802,1.76e-28,6;UBERON:0001905,1.08e-22,2;UBERON:0002757,1.08e-22,2;UBERON:0010134,1.08e-22,2;UBERON:0005408,1.08e-22,2;UBERON:0001899,1.08e-22,2;UBERON:0000970,7.23e-18,21;UBERON:0002104,7.23e-18,21;UBERON:0000020,1.37e-15,24;UBERON:0001032,1.37e-15,24;UBERON:0004456,1.37e-15,24;UBERON:0001782,6.10e-15,3;UBERON:0005424,6.10e-15,3;UBERON:0001896,1.15e-14,3;UBERON:0005290,1.15e-14,3;UBERON:0010096,1.15e-14,3;UBERON:0000019,3.59e-13,20;UBERON:0000047,3.59e-13,20;UBERON:0010312,3.59e-13,20;UBERON:0004088,3.59e-13,20;UBERON:0010230,3.59e-13,20;UBERON:0003072,3.59e-13,20;UBERON:0004128,3.59e-13,20;UBERON:0003071,3.59e-13,20;UBERON:0001456,5.76e-12,22;UBERON:0003296,7.78e-12,4;UBERON:0010133,7.78e-12,4;UBERON:0002784,7.78e-12,4;UBERON:0001781,1.92e-11,4;UBERON:0007625,3.53e-09,11;UBERON:0003075,3.77e-09,82;UBERON:0007284,3.77e-09,82;UBERON:0002346,1.13e-08,86;UBERON:0005085,1.86e-08,31;UBERON:0002298,8.71e-08,6;UBERON:0003056,9.36e-08,61;UBERON:0001894,3.96e-07,7;UBERON:0006222,3.96e-07,7;UBERON:0010371,5.53e-07,104 | |||
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|short_description=p1@CRX | |short_description=p1@CRX | ||
}} | }} |
Latest revision as of 00:58, 19 September 2015
Short description: | p1@CRX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRX_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000556527_5end |
EntrezGene: | CRX |
HGNC: | 2383 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 5.84e-33 | 5 |
pigment cell | 1.95e-18 | 14 |
retinal pigment epithelial cell | 6.10e-15 | 3 |
visual pigment cell | 1.92e-11 | 4 |
melanocyte | 7.18e-10 | 10 |
melanoblast | 7.18e-10 | 10 |