FFCP PHASE1:Hg19::chr14:22927921..22927933,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-155bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | |association_with_transcript=-155bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | ||
|cluster_id=chr14:22927921..22927933,+ | |||
|description=CAGE_peak_5_at_uc001wea.3_5end,CAGE_peak_5_at_uc010ajt.2_5end,CAGE_peak_5_at_uc010aju.1_5end | |description=CAGE_peak_5_at_uc001wea.3_5end,CAGE_peak_5_at_uc010ajt.2_5end,CAGE_peak_5_at_uc010aju.1_5end | ||
|id=chr14:22927921..22927933,+ | |id=chr14:22927921..22927933,+ | ||
|ontology_enrichment_celltype=CL:0000037!5.98e-13!172;CL:0000566!5.98e-13!172;CL:0000988!9.37e-12!182;CL:0000623!3.73e-10!3;CL:0000825!3.73e-10!3;CL:0002032!5.38e-10!165;CL:0000837!5.38e-10!165;CL:0000842!1.10e-09!3;CL:0002274!1.78e-09!5;CL:0000457!1.78e-09!5;CL:0002191!1.78e-09!5;CL:0000097!1.78e-09!5;CL:0000831!1.78e-09!5;CL:0002028!1.78e-09!5;CL:0000764!1.67e-07!2;CL:0000765!1.67e-07!2;CL:0000050!1.67e-07!2;CL:0000038!1.67e-07!2;CL:0000558!1.67e-07!2;CL:0000547!1.67e-07!2;CL:0000549!1.67e-07!2;CL:0000550!1.67e-07!2;CL:0000552!1.67e-07!2;CL:0000224!2.36e-07!4 | |ontology_enrichment_celltype=CL:0000037!5.98e-13!172;CL:0000566!5.98e-13!172;CL:0000988!9.37e-12!182;CL:0000623!3.73e-10!3;CL:0000825!3.73e-10!3;CL:0002032!5.38e-10!165;CL:0000837!5.38e-10!165;CL:0000842!1.10e-09!3;CL:0002274!1.78e-09!5;CL:0000457!1.78e-09!5;CL:0002191!1.78e-09!5;CL:0000097!1.78e-09!5;CL:0000831!1.78e-09!5;CL:0002028!1.78e-09!5;CL:0000764!1.67e-07!2;CL:0000765!1.67e-07!2;CL:0000050!1.67e-07!2;CL:0000038!1.67e-07!2;CL:0000558!1.67e-07!2;CL:0000547!1.67e-07!2;CL:0000549!1.67e-07!2;CL:0000550!1.67e-07!2;CL:0000552!1.67e-07!2;CL:0000224!2.36e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000623;7.01e-25;3!CL:0002127;1.08e-19;1!CL:0000911;1.08e-19;1!CL:0000814;1.08e-19;1!CL:0000764;2.48e-10;2!CL:0000558;2.48e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,7.02e-25,3;CL:0000825,7.02e-25,3;CL:0002127,1.08e-19,1;CL:0000914,1.08e-19,1;CL:0000911,1.08e-19,1;CL:0000814,1.08e-19,1;CL:0002042,1.08e-19,1;CL:0002039,1.08e-19,1;CL:0002040,1.08e-19,1;CL:0002041,1.08e-19,1;CL:0000893,1.57e-10,2;CL:0002489,1.57e-10,2;CL:0000809,1.57e-10,2;CL:0000808,1.57e-10,2;CL:0000894,1.57e-10,2;CL:0000806,1.57e-10,2;CL:0000807,1.57e-10,2;CL:0000805,1.57e-10,2;CL:0002425,1.57e-10,2;CL:0000764,3.58e-10,2;CL:0000765,3.58e-10,2;CL:0000050,3.58e-10,2;CL:0000038,3.58e-10,2;CL:0000558,3.58e-10,2;CL:0000547,3.58e-10,2;CL:0000549,3.58e-10,2;CL:0000550,3.58e-10,2;CL:0000552,3.58e-10,2 | |||
|ontology_enrichment_development_v019=CL:0002425;1.57e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8552;2.71e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,2.25e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!4.30e-12!15;UBERON:0000179!4.30e-12!15;UBERON:0000463!4.30e-12!15;UBERON:0004177!5.70e-11!7;UBERON:0002370!3.55e-08!4;UBERON:0005058!3.55e-08!4;UBERON:0009113!3.55e-08!4;UBERON:0003295!3.55e-08!4;UBERON:0005562!3.55e-08!4 | |ontology_enrichment_uberon=UBERON:0000178!4.30e-12!15;UBERON:0000179!4.30e-12!15;UBERON:0000463!4.30e-12!15;UBERON:0004177!5.70e-11!7;UBERON:0002370!3.55e-08!4;UBERON:0005058!3.55e-08!4;UBERON:0009113!3.55e-08!4;UBERON:0003295!3.55e-08!4;UBERON:0005562!3.55e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.27e-37;2!UBERON:0005058;3.27e-37;2!UBERON:0009113;3.27e-37;2!UBERON:0004177;1.51e-15;5!UBERON:0005057;1.51e-15;5!UBERON:0002390;5.25e-08;32!UBERON:0002114;2.63e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.67e-41,4;UBERON:0005058,1.67e-41,4;UBERON:0009113,1.67e-41,4;UBERON:0003295,1.67e-41,4;UBERON:0005562,1.67e-41,4;UBERON:0003351,5.91e-28,6;UBERON:0004177,4.48e-24,7;UBERON:0005057,4.48e-24,7;UBERON:0000974,4.47e-17,10;UBERON:0003408,4.47e-17,10;UBERON:0001042,4.47e-17,10;UBERON:0009145,4.47e-17,10;UBERON:0006562,1.38e-15,11;UBERON:0009722,1.38e-15,11;UBERON:0007690,1.38e-15,11;UBERON:0008814,8.98e-10,18;UBERON:0001557,2.73e-09,19;UBERON:0002114,3.16e-07,2 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.164201178899891,0.157421562627358,0,0.767658796194425,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0.664601683750863,0.270803863765016,0,0.130059347559878,0,0.552700035571697,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44024217006613,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91421374383171,1.37921532141349,0.215627574859517,1.15508732651774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.215714200818617,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,1.0457418040996,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,1.52927441428475,0.569647187174163,0.476463550915578,0,0,1.62009431171434,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0.324621940274555,0.280797178113459,0.228234679033192,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.627921025580099,1.32969345520125,0,0,0,0,1.27149263184303,0,0,0,0.216388639742091,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.410462603746695,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320075189082423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.81074568032436,1.30356900021302,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p5@uc001wea.3,p5@uc010ajt.2,p5@uc010aju.1 | |short_description=p5@uc001wea.3,p5@uc010ajt.2,p5@uc010aju.1 | ||
}} | }} |
Latest revision as of 19:12, 24 July 2015
Short description: | p5@uc001wea.3, p5@uc010ajt.2, p5@uc010aju.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_uc001wea.3_5end, CAGE_peak_5_at_uc010ajt.2_5end, CAGE_peak_5_at_uc010aju.1_5end |
Coexpression cluster: | NA |
Association with transcript: | -155bp_to_uc001wea.3, uc010ajt.2, uc010aju.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 7.02e-25 | 3 |
pro-NK cell | 7.02e-25 | 3 |
innate effector T cell | 1.08e-19 | 1 |
immature NK T cell | 1.08e-19 | 1 |
effector T cell | 1.08e-19 | 1 |
mature NK T cell | 1.08e-19 | 1 |
immature NK T cell stage IV | 1.08e-19 | 1 |
immature NK T cell stage I | 1.08e-19 | 1 |
immature NK T cell stage II | 1.08e-19 | 1 |
immature NK T cell stage III | 1.08e-19 | 1 |
thymocyte | 1.57e-10 | 2 |
double negative thymocyte | 1.57e-10 | 2 |
double-positive, alpha-beta thymocyte | 1.57e-10 | 2 |
DN4 thymocyte | 1.57e-10 | 2 |
DN1 thymic pro-T cell | 1.57e-10 | 2 |
DN2 thymocyte | 1.57e-10 | 2 |
DN3 thymocyte | 1.57e-10 | 2 |
immature single positive thymocyte | 1.57e-10 | 2 |
early T lineage precursor | 1.57e-10 | 2 |
erythroid lineage cell | 3.58e-10 | 2 |
erythroblast | 3.58e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 3.58e-10 | 2 |
erythroid progenitor cell | 3.58e-10 | 2 |
reticulocyte | 3.58e-10 | 2 |
proerythroblast | 3.58e-10 | 2 |
basophilic erythroblast | 3.58e-10 | 2 |
polychromatophilic erythroblast | 3.58e-10 | 2 |
orthochromatic erythroblast | 3.58e-10 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.67e-41 | 4 |
hemolymphoid system gland | 1.67e-41 | 4 |
thymic region | 1.67e-41 | 4 |
pharyngeal gland | 1.67e-41 | 4 |
thymus primordium | 1.67e-41 | 4 |
pharyngeal epithelium | 5.91e-28 | 6 |
hemopoietic organ | 4.48e-24 | 7 |
immune organ | 4.48e-24 | 7 |
neck | 4.47e-17 | 10 |
gland of gut | 4.47e-17 | 10 |
chordate pharynx | 4.47e-17 | 10 |
pharyngeal region of foregut | 4.47e-17 | 10 |
pharynx | 1.38e-15 | 11 |
entire pharyngeal arch endoderm | 1.38e-15 | 11 |
early pharyngeal endoderm | 1.38e-15 | 11 |
pharyngeal arch system | 8.98e-10 | 18 |
upper respiratory tract | 2.73e-09 | 19 |
duodenum | 3.16e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 2.25e-19 | 1 |