FFCP PHASE1:Hg19::chr12:133287392..133287412,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=192111 | |EntrezGene=192111 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28763 | |HGNC=28763 | ||
|TSSclassifier=strong | |||
|UniProt=A9LN06,Q96HS1 | |UniProt=A9LN06,Q96HS1 | ||
|association_with_transcript=0bp_to_ENST00000317555,ENST00000498926,NM_001170543,NM_001170544,NM_138575_5end | |association_with_transcript=0bp_to_ENST00000317555,ENST00000498926,NM_001170543,NM_001170544,NM_138575_5end | ||
|cluster_id=chr12:133287392..133287412,+ | |||
|coexpression_cluster_id=C3260 | |||
|description=CAGE_peak_2_at_PGAM5_5end | |description=CAGE_peak_2_at_PGAM5_5end | ||
|id=chr12:133287392..133287412,+ | |id=chr12:133287392..133287412,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.39e-35!254;CL:0002321!1.94e-19!248;CL:0000220!5.84e-19!246;CL:0000548!2.18e-18!679;CL:0000004!2.18e-18!679;CL:0000255!2.18e-18!679;CL:0000012!4.62e-18!682;CL:0000076!2.05e-10!62;CL:0000003!3.88e-10!722;CL:0000223!7.44e-10!59;CL:0000063!2.39e-09!578;CL:0002078!1.86e-07!44;CL:0002076!3.14e-07!43;CL:0000222!4.03e-07!119;CL:1000449!4.46e-07!16;CL:0000071!7.21e-07!18;CL:0002546!7.21e-07!18 | |ontology_enrichment_celltype=CL:0000066!1.39e-35!254;CL:0002321!1.94e-19!248;CL:0000220!5.84e-19!246;CL:0000548!2.18e-18!679;CL:0000004!2.18e-18!679;CL:0000255!2.18e-18!679;CL:0000012!4.62e-18!682;CL:0000076!2.05e-10!62;CL:0000003!3.88e-10!722;CL:0000223!7.44e-10!59;CL:0000063!2.39e-09!578;CL:0002078!1.86e-07!44;CL:0002076!3.14e-07!43;CL:0000222!4.03e-07!119;CL:1000449!4.46e-07!16;CL:0000071!7.21e-07!18;CL:0002546!7.21e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.98e-07;15!CL:0000071;7.55e-07;18!CL:0002681;9.76e-07;12!CL:0002584;9.76e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.36e-35,253;CL:0002321,8.99e-20,250;CL:0000223,1.52e-10,58;CL:0000076,8.02e-10,63;CL:0002076,6.83e-08,42;CL:0002078,8.57e-08,45;CL:1000449,2.18e-07,15;CL:0000222,2.23e-07,121;CL:0000071,6.89e-07,18;CL:0002546,6.89e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;7.55e-07;18 | |||
|ontology_enrichment_disease=DOID:162!1.62e-30!235;DOID:14566!4.41e-30!239;DOID:305!8.58e-18!106;DOID:0050687!9.06e-18!143;DOID:0050686!3.53e-15!137;DOID:2531!1.06e-12!51;DOID:0060083!1.06e-12!51;DOID:1240!4.19e-10!39;DOID:8692!1.40e-08!31 | |ontology_enrichment_disease=DOID:162!1.62e-30!235;DOID:14566!4.41e-30!239;DOID:305!8.58e-18!106;DOID:0050687!9.06e-18!143;DOID:0050686!3.53e-15!137;DOID:2531!1.06e-12!51;DOID:0060083!1.06e-12!51;DOID:1240!4.19e-10!39;DOID:8692!1.40e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.89e-08;31!DOID:2531;5.48e-08;51!DOID:0060083;5.48e-08;51!DOID:1240;5.67e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.36e-30,235;DOID:14566,3.71e-30,239;DOID:0050687,7.69e-18,143;DOID:305,8.94e-18,106;DOID:0050686,3.93e-15,137;DOID:2531,9.63e-13,51;DOID:0060083,9.63e-13,51;DOID:1240,3.89e-10,39;DOID:8692,1.31e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!3.47e-14!238;UBERON:0009142!3.47e-14!238;UBERON:0004119!1.36e-10!169;UBERON:0000925!1.36e-10!169;UBERON:0006595!1.36e-10!169;UBERON:0005177!3.27e-10!107;UBERON:0001041!1.06e-09!98;UBERON:0000077!1.21e-09!130;UBERON:0000072!2.00e-09!46;UBERON:0001007!5.02e-09!155;UBERON:0001555!5.02e-09!155;UBERON:0007026!5.02e-09!155;UBERON:0008947!8.10e-09!38;UBERON:0003258!8.10e-09!38;UBERON:0004921!9.12e-09!129;UBERON:0004185!9.12e-09!129;UBERON:0000490!1.35e-08!138;UBERON:0002100!3.86e-08!216;UBERON:0000065!1.12e-07!53;UBERON:0009569!1.15e-07!113;UBERON:0001004!1.99e-07!72;UBERON:0004211!4.46e-07!16;UBERON:0001285!4.46e-07!16;UBERON:0007684!4.46e-07!16;UBERON:0003220!4.46e-07!16;UBERON:0004208!4.46e-07!16;UBERON:0001851!5.59e-07!16;UBERON:0000466!6.07e-07!126;UBERON:0000487!6.09e-07!22;UBERON:0001048!6.32e-07!168;UBERON:0006554!6.50e-07!44;UBERON:0001986!7.21e-07!18;UBERON:0004638!7.21e-07!18;UBERON:0004852!7.21e-07!18;UBERON:0005172!8.51e-07!55;UBERON:0005173!8.51e-07!55 | |ontology_enrichment_uberon=UBERON:0003104!3.47e-14!238;UBERON:0009142!3.47e-14!238;UBERON:0004119!1.36e-10!169;UBERON:0000925!1.36e-10!169;UBERON:0006595!1.36e-10!169;UBERON:0005177!3.27e-10!107;UBERON:0001041!1.06e-09!98;UBERON:0000077!1.21e-09!130;UBERON:0000072!2.00e-09!46;UBERON:0001007!5.02e-09!155;UBERON:0001555!5.02e-09!155;UBERON:0007026!5.02e-09!155;UBERON:0008947!8.10e-09!38;UBERON:0003258!8.10e-09!38;UBERON:0004921!9.12e-09!129;UBERON:0004185!9.12e-09!129;UBERON:0000490!1.35e-08!138;UBERON:0002100!3.86e-08!216;UBERON:0000065!1.12e-07!53;UBERON:0009569!1.15e-07!113;UBERON:0001004!1.99e-07!72;UBERON:0004211!4.46e-07!16;UBERON:0001285!4.46e-07!16;UBERON:0007684!4.46e-07!16;UBERON:0003220!4.46e-07!16;UBERON:0004208!4.46e-07!16;UBERON:0001851!5.59e-07!16;UBERON:0000466!6.07e-07!126;UBERON:0000487!6.09e-07!22;UBERON:0001048!6.32e-07!168;UBERON:0006554!6.50e-07!44;UBERON:0001986!7.21e-07!18;UBERON:0004638!7.21e-07!18;UBERON:0004852!7.21e-07!18;UBERON:0005172!8.51e-07!55;UBERON:0005173!8.51e-07!55 | ||
|ontology_enrichment_uberon_v019=UBERON:0000072;7.77e-10;37!UBERON:0000490;1.02e-07;33!UBERON:0006554;1.38e-07;30!UBERON:0001008;1.38e-07;30!UBERON:0001851;1.96e-07;15!UBERON:0006555;1.98e-07;15!UBERON:0004819;1.98e-07;15!UBERON:0001285;1.98e-07;15!UBERON:0007684;1.98e-07;15!UBERON:0002113;2.08e-07;24!UBERON:0011143;2.08e-07;24!UBERON:0000353;3.95e-07;15!UBERON:0000487;5.55e-07;22!UBERON:0004638;7.55e-07;18!UBERON:0001986;7.55e-07;18!UBERON:0004852;7.55e-07;18!UBERON:0000065;9.02e-07;44!UBERON:0001225;9.76e-07;12!UBERON:0008987;9.76e-07;12 | |||
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| ||
|short_description=p2@PGAM5 | |short_description=p2@PGAM5 | ||
}} | }} |
Latest revision as of 11:19, 17 September 2015
Short description: | p2@PGAM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PGAM5_5end |
Coexpression cluster: | C3260_Alveolar_Renal_hepatoblastoma_Keratinocyte_Bronchial_Endothelial_granulocyte |
Association with transcript: | 0bp_to_ENST00000317555, ENST00000498926, NM_001170543, NM_001170544, NM_138575_5end |
EntrezGene: | PGAM5 |
HGNC: | 28763 |
UniProt: | A9LN06Q96HS1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.36e-35 | 253 |
embryonic cell | 8.99e-20 | 250 |
endodermal cell | 1.52e-10 | 58 |
squamous epithelial cell | 8.02e-10 | 63 |
endo-epithelial cell | 6.83e-08 | 42 |
meso-epithelial cell | 8.57e-08 | 45 |
epithelial cell of nephron | 2.18e-07 | 15 |
mesodermal cell | 2.23e-07 | 121 |
blood vessel endothelial cell | 6.89e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.89e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 8.24e-13 | 101 |
trunk | 7.36e-10 | 199 |
segment of respiratory tract | 2.42e-09 | 47 |
endoderm-derived structure | 2.68e-09 | 160 |
endoderm | 2.68e-09 | 160 |
presumptive endoderm | 2.68e-09 | 160 |
unilaminar epithelium | 2.91e-09 | 148 |
respiratory primordium | 7.55e-09 | 38 |
endoderm of foregut | 7.55e-09 | 38 |
foregut | 1.72e-08 | 87 |
subdivision of trunk | 7.25e-08 | 112 |
digestive system | 8.26e-08 | 145 |
digestive tract | 8.26e-08 | 145 |
primitive gut | 8.26e-08 | 145 |
respiratory tract | 1.24e-07 | 54 |
subdivision of digestive tract | 1.34e-07 | 118 |
nephron epithelium | 2.18e-07 | 15 |
renal tubule | 2.18e-07 | 15 |
nephron tubule | 2.18e-07 | 15 |
nephron | 2.18e-07 | 15 |
uriniferous tubule | 2.18e-07 | 15 |
nephrogenic mesenchyme | 2.18e-07 | 15 |
respiratory system | 2.62e-07 | 74 |
cortex | 2.77e-07 | 15 |
simple squamous epithelium | 4.58e-07 | 22 |
parenchyma | 5.31e-07 | 15 |
blood vessel endothelium | 6.89e-07 | 18 |
endothelium | 6.89e-07 | 18 |
cardiovascular system endothelium | 6.89e-07 | 18 |
urinary system structure | 7.96e-07 | 47 |
abdomen element | 8.32e-07 | 54 |
abdominal segment element | 8.32e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.36e-30 | 235 |
disease of cellular proliferation | 3.71e-30 | 239 |
cell type cancer | 7.69e-18 | 143 |
carcinoma | 8.94e-18 | 106 |
organ system cancer | 3.93e-15 | 137 |
hematologic cancer | 9.63e-13 | 51 |
immune system cancer | 9.63e-13 | 51 |
leukemia | 3.89e-10 | 39 |
myeloid leukemia | 1.31e-08 | 31 |