FF:14320-155D9: Difference between revisions

Latest revision as of 19:06, 4 June 2020

Name:	Preadipocyte - breast, donor2 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12584
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	40 years old adult
sex	female
age	40
cell type	preadipocyte
cell line	NA
company	Zenbio
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005354

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12584		CAGE		DRX008041		DRR008913

Accession ID Hg19

Library id		BAM		CTSS
CNhs12584		DRZ000338		DRZ001723

Accession ID Hg38

Library id		BAM		CTSS
CNhs12584		DRZ011688		DRZ013073

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005354
sRNA-Seq		SAMD00005354

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10020		RNA-Seq		DRX057108		DRR062867
SRhi10009.ACTTGA		sRNA-Seq		DRX036989		DRR041355

Accession ID Hg19

Library id		BAM		CTSS
RDhi10020		DRZ007943
SRhi10009.ACTTGA		DRZ006997

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.2
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0289
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	1.237
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.062
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.13
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.954
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.208
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0511
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.953
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.654
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.519
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0394
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.062
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.76
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00458
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0737
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0109
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.156
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.366
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.575
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.417
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.844
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.404
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.783
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.203
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12584

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0533
MA0003.1	MA0003.1	0.186
MA0004.1	MA0004.1	0.111
MA0006.1	MA0006.1	0.484
MA0007.1	MA0007.1	0.43
MA0009.1	MA0009.1	0.249
MA0014.1	MA0014.1	0.258
MA0017.1	MA0017.1	0.00754
MA0018.2	MA0018.2	0.164
MA0019.1	MA0019.1	0.952
MA0024.1	MA0024.1	0.0261
MA0025.1	MA0025.1	0.0192
MA0027.1	MA0027.1	0.706
MA0028.1	MA0028.1	0.69
MA0029.1	MA0029.1	0.166
MA0030.1	MA0030.1	0.5
MA0031.1	MA0031.1	0.295
MA0035.2	MA0035.2	0.0014
MA0038.1	MA0038.1	0.75
MA0039.2	MA0039.2	0.0986
MA0040.1	MA0040.1	0.46
MA0041.1	MA0041.1	0.5
MA0042.1	MA0042.1	0.846
MA0043.1	MA0043.1	0.0553
MA0046.1	MA0046.1	0.399
MA0047.2	MA0047.2	0.834
MA0048.1	MA0048.1	0.135
MA0050.1	MA0050.1	0.00101
MA0051.1	MA0051.1	0.00912
MA0052.1	MA0052.1	0.154
MA0055.1	MA0055.1	0.406
MA0057.1	MA0057.1	0.76
MA0058.1	MA0058.1	0.055
MA0059.1	MA0059.1	0.125
MA0060.1	MA0060.1	7.95889e-4
MA0061.1	MA0061.1	2.43834e-4
MA0062.2	MA0062.2	0.0643
MA0065.2	MA0065.2	7.30523e-6
MA0066.1	MA0066.1	0.282
MA0067.1	MA0067.1	0.489
MA0068.1	MA0068.1	0.444
MA0069.1	MA0069.1	0.031
MA0070.1	MA0070.1	0.605
MA0071.1	MA0071.1	0.196
MA0072.1	MA0072.1	0.41
MA0073.1	MA0073.1	0.897
MA0074.1	MA0074.1	0.0879
MA0076.1	MA0076.1	0.737
MA0077.1	MA0077.1	0.729
MA0078.1	MA0078.1	0.362
MA0079.2	MA0079.2	0.577
MA0080.2	MA0080.2	1.25402e-7
MA0081.1	MA0081.1	0.169
MA0083.1	MA0083.1	8.29485e-4
MA0084.1	MA0084.1	0.145
MA0087.1	MA0087.1	0.51
MA0088.1	MA0088.1	0.521
MA0090.1	MA0090.1	3.0667e-9
MA0091.1	MA0091.1	0.753
MA0092.1	MA0092.1	0.43
MA0093.1	MA0093.1	0.134
MA0099.2	MA0099.2	0.00553
MA0100.1	MA0100.1	0.7
MA0101.1	MA0101.1	2.56962e-4
MA0102.2	MA0102.2	0.957
MA0103.1	MA0103.1	7.8004e-6
MA0104.2	MA0104.2	6.25773e-4
MA0105.1	MA0105.1	5.00352e-5
MA0106.1	MA0106.1	0.898
MA0107.1	MA0107.1	2.08694e-4
MA0108.2	MA0108.2	0.0562
MA0111.1	MA0111.1	0.146
MA0112.2	MA0112.2	0.377
MA0113.1	MA0113.1	0.931
MA0114.1	MA0114.1	0.0091
MA0115.1	MA0115.1	0.0179
MA0116.1	MA0116.1	0.299
MA0117.1	MA0117.1	0.795
MA0119.1	MA0119.1	0.944
MA0122.1	MA0122.1	0.497
MA0124.1	MA0124.1	0.364
MA0125.1	MA0125.1	0.748
MA0131.1	MA0131.1	0.467
MA0135.1	MA0135.1	0.525
MA0136.1	MA0136.1	3.50799e-7
MA0137.2	MA0137.2	0.843
MA0138.2	MA0138.2	0.475
MA0139.1	MA0139.1	0.0471
MA0140.1	MA0140.1	0.231
MA0141.1	MA0141.1	0.0422
MA0142.1	MA0142.1	0.645
MA0143.1	MA0143.1	0.567
MA0144.1	MA0144.1	0.825
MA0145.1	MA0145.1	0.598
MA0146.1	MA0146.1	0.0248
MA0147.1	MA0147.1	0.00249
MA0148.1	MA0148.1	0.396
MA0149.1	MA0149.1	0.421
MA0150.1	MA0150.1	0.156
MA0152.1	MA0152.1	0.0024
MA0153.1	MA0153.1	0.895
MA0154.1	MA0154.1	0.134
MA0155.1	MA0155.1	0.325
MA0156.1	MA0156.1	0.00144
MA0157.1	MA0157.1	0.248
MA0159.1	MA0159.1	0.254
MA0160.1	MA0160.1	0.00391
MA0162.1	MA0162.1	0.822
MA0163.1	MA0163.1	0.0774
MA0164.1	MA0164.1	0.84
MA0258.1	MA0258.1	0.0941
MA0259.1	MA0259.1	0.243

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12584

Novel motif	Logo	P-value
1	1	0.154
10	10	0.499
100	100	0.373
101	101	0.417
102	102	0.0145
103	103	0.0617
104	104	0.466
105	105	0.195
106	106	0.278
107	107	0.73
108	108	0.729
109	109	0.0747
11	11	0.0797
110	110	0.386
111	111	0.271
112	112	0.2
113	113	0.897
114	114	0.8
115	115	0.698
116	116	0.629
117	117	0.0823
118	118	0.0382
119	119	0.4
12	12	0.6
120	120	0.0297
121	121	0.9
122	122	0.0997
123	123	0.223
124	124	0.191
125	125	0.592
126	126	0.0405
127	127	0.297
128	128	0.318
129	129	0.454
13	13	0.453
130	130	0.775
131	131	0.638
132	132	0.733
133	133	0.214
134	134	0.406
135	135	0.432
136	136	0.561
137	137	0.773
138	138	0.385
139	139	0.414
14	14	0.604
140	140	0.843
141	141	0.676
142	142	0.506
143	143	0.114
144	144	0.861
145	145	0.76
146	146	0.0987
147	147	0.223
148	148	0.0775
149	149	0.0775
15	15	0.175
150	150	0.651
151	151	0.366
152	152	0.501
153	153	0.171
154	154	0.338
155	155	4.55433e-4
156	156	0.926
157	157	0.238
158	158	0.174
159	159	0.539
16	16	0.822
160	160	0.0926
161	161	0.138
162	162	0.78
163	163	0.261
164	164	0.976
165	165	0.857
166	166	0.205
167	167	0.697
168	168	0.6
169	169	0.767
17	17	0.978
18	18	0.909
19	19	0.495
2	2	0.619
20	20	0.63
21	21	0.284
22	22	0.519
23	23	0.879
24	24	0.0396
25	25	0.104
26	26	0.456
27	27	0.213
28	28	0.806
29	29	0.196
3	3	0.542
30	30	0.676
31	31	0.532
32	32	1.05554e-5
33	33	0.475
34	34	0.66
35	35	0.11
36	36	0.097
37	37	0.764
38	38	0.306
39	39	0.54
4	4	0.445
40	40	0.0645
41	41	0.343
42	42	0.246
43	43	0.423
44	44	0.302
45	45	0.456
46	46	0.256
47	47	0.0817
48	48	0.473
49	49	0.166
5	5	0.799
50	50	0.793
51	51	0.291
52	52	0.962
53	53	0.548
54	54	0.674
55	55	0.0794
56	56	0.263
57	57	0.684
58	58	0.0639
59	59	0.0532
6	6	0.179
60	60	0.242
61	61	0.0573
62	62	0.0809
63	63	0.725
64	64	0.106
65	65	0.327
66	66	0.407
67	67	0.862
68	68	0.945
69	69	0.439
7	7	0.104
70	70	0.0773
71	71	0.258
72	72	0.305
73	73	0.777
74	74	0.429
75	75	0.112
76	76	0.574
77	77	0.966
78	78	0.167
79	79	0.0262
8	8	0.0375
80	80	0.88
81	81	0.856
82	82	0.401
83	83	0.646
84	84	0.122
85	85	0.6
86	86	0.712
87	87	0.581
88	88	0.763
89	89	0.471
9	9	0.758
90	90	0.887
91	91	0.66
92	92	0.68
93	93	0.538
94	94	0.361
95	95	0.584
96	96	0.708
97	97	0.412
98	98	0.041
99	99	0.388

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12584

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000671 human Preadipocyte - breast, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000139 (human preadipocyte of the breast sample)
0000406 (nuclear fraction sample)
0000671 (human Preadipocyte - breast, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005354
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005354!sRNA-Seq@SAMD00005354
+|accession_numbers=CAGE;DRX008041;DRR008913;DRZ000338;DRZ001723;DRZ011688;DRZ013073
+|accession_numbers_RNASeq=RNA-Seq;DRX057108;DRR062867;DRZ007943!sRNA-Seq;DRX036989;DRR041355;DRZ006997
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002334,CL:0002580
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000408,FF:0000350,FF:0000139,FF:0000406,FF:0000671
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.09!122.62!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.98!106.96!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.70!49.41!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.45!PRRX2;;chr18:53068911..53068935,-!p4@TCF4!1.43!29.46!TCF4;;chr1:170632959..170632987,+!p4@PRRX1!1.37!24.55!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.36!22.10!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!1.34!20.87!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!1.34!20.72!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.33!20.41!DLX5;;chr14:62162258..62162269,+!p2@HIF1A!1.31!181.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.31!98.22!HIF1A;;chr1:170632250..170632277,+!p7@PRRX1!1.29!18.42!PRRX1;;chr12:54402790..54402805,+!p2@HOXC8!1.28!17.96!HOXC8;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.25!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.25!45.27!OSR1;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.08!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.71!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.73!ZBED1;;chr4:111558135..111558198,-!p2@PITX2!1.25!16.73!PITX2;;chr6:144289132..144289134,-!p3@PLAGL1!1.23!36.83!PLAGL1;;chr8:40755333..40755352,-!p1@ZMAT4!1.23!15.96!ZMAT4;;chr6:144329384..144329405,-!p1@PLAGL1!1.21!175.56!PLAGL1;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.19!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.18!39.13!TWIST1;;chr10:131762504..131762555,-!p1@EBF3!1.17!13.66!EBF3;;chr6:19837592..19837621,+!p1@ID4!1.16!81.03!ID4;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!69.83!CREB3L1;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!50.95!TSC22D3;;chr12:54402729..54402743,+!p3@HOXC8!1.16!13.50!HOXC8;;chr4:4861385..4861398,+!p1@MSX1!1.15!38.67!MSX1;;chr5:158526917..158526932,-!p1@EBF1!1.14!31.92!EBF1;;chr2:119605214..119605230,-!p1@EN1!1.13!12.58!EN1;;chr17:46682321..46682362,-!p1@HOXB6!1.12!12.28!HOXB6;;chr1:170632439..170632465,+!p11@PRRX1!1.08!11.05!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.07!10.74!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.05!232.19!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!1.03!21.79!GLI2;;chr2:121493492..121493537,+!p2@GLI2!1.03!16.11!GLI2;;chr12:80085061..80085119,-!p6@PAWR!1.02!15.35!PAWR;;chr12:54410948..54410992,+!p3@HOXC5!1.02!9.51!HOXC5;;chr14:62162224..62162254,+!p1@HIF1A!1.00!1340.18!HIF1A;;chr5:72744594..72744609,-!p1@FOXD1!0.99!40.97!FOXD1;;chr12:54447637..54447659,+!p4@HOXC4!0.99!8.75!HOXC4;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.82!PRRX1;;chr1:23885981..23886002,-!p1@ID3!0.97!1497.02!ID3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.97!76.12!PPP1R13L;;chr8:77593474..77593612,+!p1@ZFHX4!0.97!36.52!ZFHX4;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.19!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.33!ZFPM2;;chr1:170632683..170632696,+!p12@PRRX1!0.95!7.83!PRRX1;;chr14:95236551..95236576,-!p2@GSC!0.94!7.67!GSC;;chr2:177001290..177001315,+!p1@HOXD3!0.94!7.67!HOXD3;;chr4:174451370..174451387,-!p1@HAND2!0.91!7.21!HAND2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.21!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.91!7.06!TBX5;;chr4:111544219..111544240,-!p1@PITX2!0.91!7.06!PITX2;;chr19:50432453..50432468,+!p1@ATF5!0.89!393.94!ATF5;;chr10:63809106..63809127,+!p1@ARID5B!0.89!96.83!ARID5B;;chr17:38498594..38498661,+!p2@RARA!0.88!23.17!RARA;;chr10:114710244..114710257,+!p3@TCF7L2!0.88!18.72!TCF7L2;;chr12:48298765..48298783,-!p2@VDR!0.88!14.12!VDR;;chr11:12696071..12696086,+!p3@TEAD1!0.88!8.75!TEAD1;;chrX:106960221..106960236,-!p3@TSC22D3!0.87!18.72!TSC22D3;;chr12:56753869..56753930,-!p1@STAT2!0.86!294.65!STAT2;;chr7:86782094..86782108,+!p5@DMTF1!0.86!10.44!DMTF1;;chrX:66763856..66763896,+!p1@AR!0.85!8.90!AR;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.14!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.14!HAND2;;chr3:170076314..170076334,+!p2@SKIL!0.84!7.83!SKIL;;chr3:71630980..71631110,-!p3@FOXP1!0.83!21.18!FOXP1;;chr16:67881588..67881612,-!p2@CENPT!0.83!8.13!CENPT;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.83!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.83!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.68!HOXC9;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.88!TWIST2;;chr1:200379104..200379128,-!p2@ZNF281!0.81!14.27!ZNF281;;chr17:38256799..38256815,-!p3@NR1D1!0.81!10.28!NR1D1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.13!GATA6;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.37!EBF1;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.58!ZNF503;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.88!KLF7;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.37!ZNF668;;chr7:1577899..1577943,+!p3@MAFK!0.80!5.37!MAFK;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.37!DLX5;;chr10:114710218..114710229,+!p4@TCF7L2!0.79!10.74!TCF7L2;;chr2:223163706..223163730,-!p1@PAX3!0.79!5.22!PAX3;;chr10:114709999..114710031,+!p1@TCF7L2!0.78!131.98!TCF7L2;;chr1:119530636..119530653,-!p2@TBX15!0.78!5.06!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.72!SNAI2;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.96!TBX3;;chr12:80084303..80084332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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:14320-155D9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000671
+|is_a=EFO:0002091;;FF:0000671
+|is_obsolete=
+|library_id=CNhs12584
+|library_id_phase_based=2:CNhs12584
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14320
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ACTTGA.14320
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14320
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ACTTGA.14320
 |name=Preadipocyte - breast, donor2 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 42: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12584,LSID912,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10009,,,
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 |rna_box=155
 |rna_catalog_number=N/A
@@ Line 56: / Line 81: @@
 |rna_tube_id=155D9
 |rna_weight_ug=7.25625
+|rnaseq_library_id=RDhi10020!SRhi10009.ACTTGA
 |sample_age=40
+|sample_category=fractionations and perturbations
 |sample_cell_catalog=F-BR-F
 |sample_cell_line=
@@ Line 77: / Line 104: @@
 |sample_tissue=breast
 |top_motifs=HIF1A:2.65728853995;EVI1:2.20325154425;NKX3-1:2.20197105827;ALX4:2.12238060941;FOXA2:2.03616632584;EN1,2:2.00955979416;GCM1,2:1.95017703335;HBP1_HMGB_SSRP1_UBTF:1.86575403062;ADNP_IRX_SIX_ZHX:1.81692508579;HMGA1,2:1.81267622787;TEAD1:1.79476556309;XBP1:1.78750329886;FOXL1:1.77112968919;NKX2-1,4:1.67196882956;MYBL2:1.67072724872;SRF:1.60993072813;TAL1_TCF{3,4,12}:1.57836270802;NFATC1..3:1.57212902723;GLI1..3:1.45552094964;NR3C1:1.43855179755;GZF1:1.41480624075;HMX1:1.41430737453;ZNF238:1.40442284379;IKZF1:1.37472884864;ATF6:1.31838499531;MAFB:1.28145492229;NKX3-2:1.27234331958;TBX4,5:1.21679554282;MAZ:1.1923821225;SMAD1..7,9:1.15275157092;UFEwm:1.13146330823;HOX{A6,A7,B6,B7}:1.09218869644;STAT1,3:1.06184682667;HES1:1.06060823812;GATA4:1.05098223199;TP53:1.01267858751;MTE{core}:1.00813229219;NFE2L1:1.00640978744;HOX{A4,D4}:0.975171012902;TFAP4:0.954065814063;TLX1..3_NFIC{dimer}:0.953128528515;NFIX:0.92866024987;HOX{A5,B5}:0.913842854251;MEF2{A,B,C,D}:0.913526339308;GFI1B:0.896216134778;MZF1:0.865836045094;PITX1..3:0.850919277988;EBF1:0.849104960242;NANOG{mouse}:0.837434218611;ESR1:0.83613842188;T:0.833175548555;SOX17:0.815334322984;NKX2-2,8:0.807538312725;GTF2I:0.782523468261;GTF2A1,2:0.767147168856;NFE2L2:0.762792685056;RXRA_VDR{dimer}:0.760318112212;PRDM1:0.741274173324;KLF4:0.724418515603;TEF:0.715069520093;SOX5:0.669058839005;HSF1,2:0.597362849478;NR6A1:0.594887833465;FOXP1:0.593055391666;TOPORS:0.582619744417;HLF:0.581964010007;TFAP2B:0.554503464068;ZNF384:0.541614233704;MYB:0.519474779503;PAX2:0.509631302289;RREB1:0.503343453157;ELK1,4_GABP{A,B1}:0.483862268;IKZF2:0.470612640778;TFDP1:0.463819846861;SPZ1:0.440014427396;HIC1:0.439062735215;DBP:0.419396579583;RXR{A,B,G}:0.417581240806;ZNF423:0.408944924707;AHR_ARNT_ARNT2:0.401801230344;FOXO1,3,4:0.397884033944;NHLH1,2:0.376825890271;ZNF148:0.325220412447;PAX5:0.316459460182;EP300:0.314692403737;FOX{I1,J2}:0.31000096877;AR:0.306440021203;XCPE1{core}:0.286482690372;PAX8:0.278112064154;SREBF1,2:0.274246809039;ZBTB16:0.267907158727;PATZ1:0.254195362496;ONECUT1,2:0.24475115045;GFI1:0.244606598642;SOX2:0.243105661039;TBP:0.230586328167;CREB1:0.208555412851;ZNF143:0.207763433135;ARID5B:0.202593059542;FOXN1:0.199012213185;STAT2,4,6:0.191364240684;NRF1:0.181742510205;TFAP2{A,C}:0.17392255704;CEBPA,B_DDIT3:0.168844271855;POU1F1:0.124285781449;TFCP2:0.100858250958;ATF4:0.0839093618093;PAX4:0.0794746280024;TLX2:0.0666099934763;EGR1..3:0.0636040558527;PAX1,9:0.0538626066986;ZIC1..3:0.0502266206944;NFE2:0.0381270921485;ATF5_CREB3:0.0366367166842;AIRE:0.0192976804425;FOX{D1,D2}:0.00584335007567;FOSL2:-0.013281326029;BACH2:-0.0255683569403;YY1:-0.0303134432624;ZFP161:-0.0330349398213;MED-1{core}:-0.0358566896643;HAND1,2:-0.0399538612614;FOS_FOS{B,L1}_JUN{B,D}:-0.0415240806576;BPTF:-0.0566075415379;SP1:-0.0578136097227;MYFfamily:-0.0714770851133;NKX2-3_NKX2-5:-0.0806234982363;LHX3,4:-0.0977554071065;IRF1,2:-0.108324034741;POU6F1:-0.124767392555;OCT4_SOX2{dimer}:-0.129543905332;POU3F1..4:-0.138637863202;RFX1:-0.156916449054;HNF1A:-0.168012536103;NKX6-1,2:-0.18478294262;LEF1_TCF7_TCF7L1,2:-0.191194172151;POU5F1:-0.206554447578;bHLH_family:-0.20657671381;TGIF1:-0.209344471459;DMAP1_NCOR{1,2}_SMARC:-0.23235097007;ELF1,2,4:-0.262477320746;MTF1:-0.263365704651;NR1H4:-0.284837840907;RUNX1..3:-0.292866747612;NFY{A,B,C}:-0.313737045729;E2F1..5:-0.327233277128;SOX{8,9,10}:-0.333002362203;JUN:-0.334588823358;CDC5L:-0.349939845488;ETS1,2:-0.357253377554;NANOG:-0.361608033957;PRRX1,2:-0.366373462496;ZBTB6:-0.385159053806;REST:-0.417098699586;SPI1:-0.431110249473;STAT5{A,B}:-0.436096950918;CUX2:-0.477926010649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520001814837;ATF2:-0.541111376199;CRX:-0.564225662455;HNF4A_NR2F1,2:-0.585675309798;NFKB1_REL_RELA:-0.59976395343;IRF7:-0.599965281493;FOXD3:-0.617850367825;SPIB:-0.619213105398;RFX2..5_RFXANK_RFXAP:-0.623231617436;PPARG:-0.625266937642;FOXP3:-0.734302337544;PDX1:-0.752407057553;GATA6:-0.753598221315;RORA:-0.76319436469;RBPJ:-0.765528934364;BREu{core}:-0.781222013712;PAX3,7:-0.816485657434;ALX1:-0.857645881858;NFIL3:-0.868238851548;SNAI1..3:-0.879743724096;ESRRA:-0.960583823521;CDX1,2,4:-0.967773919855;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01102376995;FOX{F1,F2,J1}:-1.06845651333;ZEB1:-1.08992342898;NR5A1,2:-1.13022609018;LMO2:-1.15438415951;FOXM1:-1.2147658422;PAX6:-1.2716088019;HOXA9_MEIS1:-1.36724137686;FOXQ1:-1.46027661861;VSX1,2:-1.47726062974;PBX1:-1.55828383418;POU2F1..3:-1.60322421784;MYOD1:-1.85996215585
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14320-155D9;search_select_hide=table117:FF:14320-155D9
 }}

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FF:14320-155D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0