FF:14314-155D3: Difference between revisions

Latest revision as of 19:06, 4 June 2020

Name:	Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12402
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	54 years old adult
sex	male
age	54
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	CA354-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005133

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12402		CAGE		DRX008044		DRR008916

Accession ID Hg19

Library id		BAM		CTSS
CNhs12402		DRZ000341		DRZ001726

Accession ID Hg38

Library id		BAM		CTSS
CNhs12402		DRZ011691		DRZ013076

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005133
sRNA-Seq		SAMD00005133

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10006		RNA-Seq		DRX057106		DRR062865
SRhi10015.GATCAG		sRNA-Seq		DRX036987		DRR041353

Accession ID Hg19

Library id		BAM		CTSS
RDhi10006		DRZ007941
SRhi10015.GATCAG		DRZ006995

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.283
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.176
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.707
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0811
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.437
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.745
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.172
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.375
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.119
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.829
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0761
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.545
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.119
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0766
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.315
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.212
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.881
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.601
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.068
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.305
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.102
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0564
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.299
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0.212
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12402

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.127
MA0003.1	MA0003.1	0.847
MA0004.1	MA0004.1	0.104
MA0006.1	MA0006.1	0.646
MA0007.1	MA0007.1	0.833
MA0009.1	MA0009.1	0.706
MA0014.1	MA0014.1	0.584
MA0017.1	MA0017.1	0.00668
MA0018.2	MA0018.2	0.203
MA0019.1	MA0019.1	0.994
MA0024.1	MA0024.1	5.23329e-4
MA0025.1	MA0025.1	0.0289
MA0027.1	MA0027.1	0.498
MA0028.1	MA0028.1	0.637
MA0029.1	MA0029.1	0.401
MA0030.1	MA0030.1	0.336
MA0031.1	MA0031.1	0.11
MA0035.2	MA0035.2	0.0236
MA0038.1	MA0038.1	0.0291
MA0039.2	MA0039.2	0.289
MA0040.1	MA0040.1	0.212
MA0041.1	MA0041.1	0.511
MA0042.1	MA0042.1	0.843
MA0043.1	MA0043.1	0.223
MA0046.1	MA0046.1	0.0478
MA0047.2	MA0047.2	0.733
MA0048.1	MA0048.1	0.247
MA0050.1	MA0050.1	1.67165e-4
MA0051.1	MA0051.1	0.00968
MA0052.1	MA0052.1	0.197
MA0055.1	MA0055.1	0.589
MA0057.1	MA0057.1	0.958
MA0058.1	MA0058.1	0.0357
MA0059.1	MA0059.1	0.187
MA0060.1	MA0060.1	5.90864e-7
MA0061.1	MA0061.1	0.00979
MA0062.2	MA0062.2	0.108
MA0065.2	MA0065.2	0.0014
MA0066.1	MA0066.1	0.908
MA0067.1	MA0067.1	0.355
MA0068.1	MA0068.1	0.0316
MA0069.1	MA0069.1	0.0855
MA0070.1	MA0070.1	0.163
MA0071.1	MA0071.1	0.226
MA0072.1	MA0072.1	0.291
MA0073.1	MA0073.1	0.67
MA0074.1	MA0074.1	0.769
MA0076.1	MA0076.1	0.893
MA0077.1	MA0077.1	0.172
MA0078.1	MA0078.1	0.999
MA0079.2	MA0079.2	0.705
MA0080.2	MA0080.2	2.17815e-8
MA0081.1	MA0081.1	0.028
MA0083.1	MA0083.1	0.00188
MA0084.1	MA0084.1	0.332
MA0087.1	MA0087.1	0.935
MA0088.1	MA0088.1	0.375
MA0090.1	MA0090.1	2.32462e-4
MA0091.1	MA0091.1	0.798
MA0092.1	MA0092.1	0.995
MA0093.1	MA0093.1	0.175
MA0099.2	MA0099.2	0.326
MA0100.1	MA0100.1	0.303
MA0101.1	MA0101.1	0.00176
MA0102.2	MA0102.2	0.69
MA0103.1	MA0103.1	2.35231e-4
MA0104.2	MA0104.2	0.0114
MA0105.1	MA0105.1	0.00516
MA0106.1	MA0106.1	0.421
MA0107.1	MA0107.1	0.00341
MA0108.2	MA0108.2	0.0592
MA0111.1	MA0111.1	0.0745
MA0112.2	MA0112.2	0.741
MA0113.1	MA0113.1	0.946
MA0114.1	MA0114.1	0.00148
MA0115.1	MA0115.1	0.026
MA0116.1	MA0116.1	0.486
MA0117.1	MA0117.1	0.907
MA0119.1	MA0119.1	0.906
MA0122.1	MA0122.1	0.731
MA0124.1	MA0124.1	6.0919e-4
MA0125.1	MA0125.1	0.0704
MA0131.1	MA0131.1	0.855
MA0135.1	MA0135.1	0.522
MA0136.1	MA0136.1	4.39297e-8
MA0137.2	MA0137.2	0.226
MA0138.2	MA0138.2	0.584
MA0139.1	MA0139.1	0.635
MA0140.1	MA0140.1	0.091
MA0141.1	MA0141.1	0.033
MA0142.1	MA0142.1	0.00981
MA0143.1	MA0143.1	0.863
MA0144.1	MA0144.1	0.522
MA0145.1	MA0145.1	0.917
MA0146.1	MA0146.1	0.129
MA0147.1	MA0147.1	0.134
MA0148.1	MA0148.1	0.676
MA0149.1	MA0149.1	0.51
MA0150.1	MA0150.1	0.603
MA0152.1	MA0152.1	0.171
MA0153.1	MA0153.1	0.96
MA0154.1	MA0154.1	0.21
MA0155.1	MA0155.1	0.783
MA0156.1	MA0156.1	6.73063e-4
MA0157.1	MA0157.1	0.183
MA0159.1	MA0159.1	0.672
MA0160.1	MA0160.1	0.00318
MA0162.1	MA0162.1	0.175
MA0163.1	MA0163.1	0.0832
MA0164.1	MA0164.1	0.196
MA0258.1	MA0258.1	0.622
MA0259.1	MA0259.1	0.521

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12402

Novel motif	Logo	P-value
1	1	0.118
10	10	0.169
100	100	0.352
101	101	0.258
102	102	0.327
103	103	0.699
104	104	0.994
105	105	0.228
106	106	0.291
107	107	0.544
108	108	0.397
109	109	0.208
11	11	0.437
110	110	0.84
111	111	0.187
112	112	0.875
113	113	0.136
114	114	0.692
115	115	0.395
116	116	0.475
117	117	0.5
118	118	0.956
119	119	0.597
12	12	0.641
120	120	0.712
121	121	0.9
122	122	0.0586
123	123	8.98358e-4
124	124	0.0685
125	125	0.398
126	126	0.446
127	127	0.288
128	128	0.104
129	129	0.469
13	13	0.166
130	130	0.372
131	131	0.858
132	132	0.847
133	133	0.554
134	134	0.48
135	135	0.301
136	136	0.604
137	137	0.972
138	138	0.607
139	139	0.618
14	14	0.216
140	140	0.329
141	141	0.597
142	142	0.761
143	143	0.602
144	144	0.916
145	145	0.392
146	146	0.0238
147	147	0.0592
148	148	0.455
149	149	0.125
15	15	0.104
150	150	0.411
151	151	0.719
152	152	0.584
153	153	0.912
154	154	0.678
155	155	0.094
156	156	0.156
157	157	0.859
158	158	0.0923
159	159	0.551
16	16	0.308
160	160	0.054
161	161	0.497
162	162	0.822
163	163	0.263
164	164	0.117
165	165	0.293
166	166	0.163
167	167	0.327
168	168	0.497
169	169	0.827
17	17	0.795
18	18	0.534
19	19	0.587
2	2	0.874
20	20	0.683
21	21	0.993
22	22	0.963
23	23	0.532
24	24	0.338
25	25	0.095
26	26	0.676
27	27	0.319
28	28	0.339
29	29	0.769
3	3	0.586
30	30	0.608
31	31	0.996
32	32	5.16482e-11
33	33	0.217
34	34	0.463
35	35	0.682
36	36	0.00494
37	37	0.986
38	38	0.256
39	39	0.808
4	4	0.133
40	40	0.0146
41	41	0.0941
42	42	0.17
43	43	0.295
44	44	0.694
45	45	0.312
46	46	0.543
47	47	0.151
48	48	0.37
49	49	0.05
5	5	0.441
50	50	0.622
51	51	0.266
52	52	0.551
53	53	0.112
54	54	0.288
55	55	0.415
56	56	0.311
57	57	0.574
58	58	0.264
59	59	0.762
6	6	0.751
60	60	0.331
61	61	0.463
62	62	0.125
63	63	0.815
64	64	0.185
65	65	0.561
66	66	0.0691
67	67	0.571
68	68	0.748
69	69	0.949
7	7	0.055
70	70	0.271
71	71	0.711
72	72	0.133
73	73	0.556
74	74	0.212
75	75	0.587
76	76	0.95
77	77	0.689
78	78	0.0978
79	79	0.0605
8	8	0.242
80	80	0.398
81	81	0.371
82	82	0.87
83	83	0.139
84	84	0.166
85	85	0.928
86	86	0.71
87	87	0.877
88	88	0.73
89	89	0.472
9	9	0.9
90	90	0.245
91	91	0.893
92	92	0.677
93	93	0.839
94	94	0.674
95	95	0.533
96	96	0.174
97	97	0.284
98	98	0.0243
99	99	0.237

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12402

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000672 human Smooth Muscle Cells - Aortic, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000168 (human aortic smooth muscle cell sample)
0000406 (nuclear fraction sample)
0000672 (human Smooth Muscle Cells - Aortic, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007937
+|DRA_sample_Accession=CAGE@SAMD00005133
-|accession_numbers=CAGE;DRX008044;DRR008916;DRZ000341;DRZ001726
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005133!sRNA-Seq@SAMD00005133
+|accession_numbers=CAGE;DRX008044;DRR008916;DRZ000341;DRZ001726;DRZ011691;DRZ013076
+|accession_numbers_RNASeq=RNA-Seq;DRX057106;DRR062865;DRZ007941!sRNA-Seq;DRX036987;DRR041353;DRZ006995
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:46299539..46299620,+!p2@CREB3L1!1.96!149.22!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.90!79.02!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.64!113.02!OSR1;;chr11:46299199..46299233,+!p1@CREB3L1!1.50!153.63!CREB3L1;;chr18:19749541..19749557,+!p1@GATA6!1.39!72.72!GATA6;;chr12:66218598..66218645,+!p2@HMGA2!1.31!88.15!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.39!GATA6;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.89!KDM5D;;chr11:46299443..46299459,+!p4@CREB3L1!1.29!18.57!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!1.22!18.26!FOXD1;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.30!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.20!68.00!FOXD1;;chr12:52445218..52445237,+!p1@NR4A1!1.19!180.70!NR4A1;;chr7:150946376..150946389,-!p6@SMARCD3!1.19!14.48!SMARCD3;;chr12:72056800..72056834,+!p1@THAP2!1.17!18.57!THAP2;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.24!AEBP1;;chr5:72744445..72744466,-!p2@FOXD1!1.14!21.41!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!1.13!276.72!AEBP1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!17.00!RUNX1;;chr21:36260295..36260310,-!p3@RUNX1!1.12!19.83!RUNX1;;chr17:46126136..46126152,+!p1@NFE2L1!1.11!607.90!NFE2L1;;chr7:35293685..35293718,-!p1@TBX20!1.11!11.96!TBX20;;chr19:45971246..45971265,+!p1@FOSB!1.10!217.22!FOSB;;chr16:86544113..86544145,+!p1@FOXF1!1.09!14.17!FOXF1;;chr12:66218836..66218888,+!p1@HMGA2!1.08!104.52!HMGA2;;chr3:141087562..141087594,+!p12@ZBTB38!1.08!11.02!ZBTB38;;chr6:144329384..144329405,-!p1@PLAGL1!1.03!113.96!PLAGL1;;chr3:141087454..141087465,+!p19@ZBTB38!1.03!9.76!ZBTB38;;chr19:47523058..47523114,+!p1@NPAS1!1.02!9.44!NPAS1;;chr21:36260343..36260402,-!p6@RUNX1!1.01!15.11!RUNX1;;chr7:1577899..1577943,+!p3@MAFK!1.01!9.13!MAFK;;chr19:50432453..50432468,+!p1@ATF5!1.00!511.26!ATF5;;chr3:141087393..141087426,+!p3@ZBTB38!1.00!36.52!ZBTB38;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.43!DRAP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.99!9.76!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.98!8.50!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.97!26.13!IFI16;;chr11:46316699..46316719,+!p10@CREB3L1!0.96!8.19!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.95!28.02!MEIS1;;chr7:137686552..137686564,-!p9@CREB3L2!0.95!11.96!CREB3L2;;chr6:10415276..10415341,-!p2@TFAP2A!0.95!9.76!TFAP2A;;chr12:66218923..66218934,+!p14@HMGA2!0.95!7.87!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.87!RARB;;chr4:174451370..174451387,-!p1@HAND2!0.93!7.56!HAND2;;chr14:62162258..62162269,+!p2@HIF1A!0.92!73.04!HIF1A;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.59!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.92!11.65!HMGA2;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.24!SOX17;;chr1:170632250..170632277,+!p7@PRRX1!0.92!7.24!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.92!7.24!PRRX1;;chr10:63809106..63809127,+!p1@ARID5B!0.91!100.74!ARID5B;;chr1:170632285..170632309,+!p1@PRRX1!0.91!8.19!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.19!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.90!6.93!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.89!29.91!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.57!ZFPM2;;chr7:44143997..44144008,+!p3@AEBP1!0.89!8.81!AEBP1;;chr5:321810..321877,+!p1@AHRR!0.88!22.04!AHRR;;chr7:137686763..137686784,-!p5@CREB3L2!0.88!11.65!CREB3L2;;chr17:46655704..46655718,-!p2@HOXB4!0.88!10.07!HOXB4;;chr11:65687362..65687436,+!p3@DRAP1!0.87!30.85!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.30!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.86!6.30!RBPJ;;chr12:124873357..124873401,-!p1@NCOR2!0.85!74.30!NCOR2;;chr19:52074502..52074587,+!p1@ZNF175!0.85!23.30!ZNF175;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.39!ZBTB20;;chr4:26322267..26322334,+!p3@RBPJ!0.84!15.11!RBPJ;;chr15:42749722..42749739,-!p2@ZFP106!0.84!11.02!ZFP106;;chr15:57511609..57511651,+!p2@TCF12!0.84!10.39!TCF12;;chr11:34642612..34642646,+!p1@EHF!0.84!5.98!EHF;;chr3:141121820..141121838,+!p9@ZBTB38!0.84!5.98!ZBTB38;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.89!SMARCD3;;chr2:121493425..121493474,+!p1@GLI2!0.83!13.22!GLI2;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.87!NFIX;;chr9:35732647..35732678,+!p2@CREB3!0.82!33.68!CREB3;;chr19:9609272..9609297,-!p1@ZNF560!0.82!5.67!ZNF560;;chr2:185463247..185463263,+!p1@ZNF804A!0.81!10.07!ZNF804A;;chr12:26277817..26277863,-!p2@BHLHE41!0.81!7.56!BHLHE41;;chr1:170632959..170632987,+!p4@PRRX1!0.81!5.98!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.80!5.35!CREB3L1;;chr9:16705069..16705086,-!p3@BNC2!0.80!5.35!BNC2;;chr15:60884706..60884743,-!p1@RORA!0.79!28.96!RORA;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.87!SATB2;;chr1:170633348..170633399,+!p2@PRRX1!0.79!7.24!PRRX1;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.93!SKIL;;chr10:77161504..77161530,-!p1@ZNF503!0.78!73.04!ZNF503;;chr17:46622070..46622109,-!p1@HOXB2!0.78!11.96!HOXB2;;chr17:46659728..46659749,-!p3@HOXB3!0.78!5.04!HOXB3;;chr19:54041669..54041697,+!p2@ZNF331!0.78!5.04!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!0.78!5.04!ZNF331;;chr1:170633058..170633084,+!p5@PRRX1!0.78!5.04!PRRX1;;chr21:36260325..36260341,-!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@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor0%2520%2528nuclear%2520fraction%2529.CNhs12402.14314-155D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:14314-155D3
 |is_a=EFO:0002091;;FF:0000672
 |is_obsolete=
 |library_id=CNhs12402
-|library_ids=CNhs12402
+|library_id_phase_based=2:CNhs12402
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14314
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GATCAG.14314
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14314
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GATCAG.14314
 |name=Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 50: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12402,LSID914,release011,COMPLETED
-|profile_rnaseq=RDhi10006,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10015,,,
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@@ Line 66: / Line 81: @@
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@@ Line 89: / Line 105: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14314-155D3;search_select_hide=table117:FF:14314-155D3
 }}

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FF:14314-155D3: Difference between revisions

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Latest revision as of 19:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0