FF:12642-134G5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005537 | ||
|ancestors_in_cell_lineage_facet=CL:0000003 | |accession_numbers=CAGE;DRX008579;DRR009451;DRZ000876;DRZ002261;DRZ012226;DRZ013611 | ||
|ancestors_in_disease_facet= | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |||
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0000344,FF:0000339,FF:0000546 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|donor=biol_rep1 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12642-134G5 | |fonse_treatment_closure=EFO:0000369,FF:0000339,FF:0000546,FF:12642-134G5 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK1%2529.CNhs13339.12642-134G5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK1%2529.CNhs13339.12642-134G5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK1%2529.CNhs13339.12642-134G5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK1%2529.CNhs13339.12642-134G5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Aortic%2520smooth%2520muscle%2520cell%2520response%2520to%2520FGF2%252c%252000hr00min%252c%2520biol_rep1%2520%2528LK1%2529.CNhs13339.12642-134G5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12642-134G5 | |id=FF:12642-134G5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000546 | ||
|name=Aortic smooth muscle cell response to FGF2 | |is_obsolete= | ||
|library_id=CNhs13339 | |||
|library_id_phase_based=2:CNhs13339 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12642 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12642 | |||
|name=Aortic smooth muscle cell response to FGF2 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
| Line 44: | Line 64: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=134 | |rna_box=134 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=4.94 | |rna_weight_ug=4.94 | ||
|sample_age= | |sample_age= | ||
|sample_category=time courses | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition=Aortic smooth muscle cell response to fibroblast growth factor 2 | |sample_experimental_condition=Aortic smooth muscle cell response to fibroblast growth factor 2 | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.08411443115802e-213!GO:0005737;cytoplasm;4.30856046859422e-196!GO:0043226;organelle;7.63300032145989e-148!GO:0043229;intracellular organelle;1.53201073522326e-147!GO:0044444;cytoplasmic part;1.53201073522326e-147!GO:0043227;membrane-bound organelle;8.80692919229663e-144!GO:0043231;intracellular membrane-bound organelle;8.80692919229663e-144!GO:0044422;organelle part;3.9086901899966e-120!GO:0044446;intracellular organelle part;2.50146377549088e-118!GO:0032991;macromolecular complex;5.2793151107459e-92!GO:0030529;ribonucleoprotein complex;1.60058541982433e-86!GO:0005515;protein binding;8.57001598916177e-83!GO:0044237;cellular metabolic process;6.19282828903498e-71!GO:0044238;primary metabolic process;1.04128350924945e-70!GO:0005739;mitochondrion;2.04843568075512e-68!GO:0003723;RNA binding;9.92176962687757e-64!GO:0043233;organelle lumen;1.18690679034713e-63!GO:0031974;membrane-enclosed lumen;1.18690679034713e-63!GO:0043170;macromolecule metabolic process;5.9319896192519e-62!GO:0006412;translation;1.33102967548991e-55!GO:0044428;nuclear part;1.02781158130832e-54!GO:0005840;ribosome;6.73268382790034e-54!GO:0019538;protein metabolic process;1.83601626628806e-52!GO:0031090;organelle membrane;3.2671465357532e-51!GO:0003735;structural constituent of ribosome;1.35111467351525e-48!GO:0044260;cellular macromolecule metabolic process;4.67241887765887e-48!GO:0044429;mitochondrial part;1.64322948005335e-46!GO:0044267;cellular protein metabolic process;2.00749116945596e-46!GO:0009058;biosynthetic process;2.04331938902936e-46!GO:0016043;cellular component organization and biogenesis;1.04601134487137e-45!GO:0009059;macromolecule biosynthetic process;9.53430387008394e-45!GO:0044249;cellular biosynthetic process;1.2536639997882e-44!GO:0005829;cytosol;1.3079089832975e-44!GO:0043234;protein complex;1.3079089832975e-44!GO:0015031;protein transport;1.60969534982852e-44!GO:0033036;macromolecule localization;8.61787528107071e-44!GO:0033279;ribosomal subunit;1.19699580073154e-42!GO:0006396;RNA processing;1.21060225373752e-42!GO:0045184;establishment of protein localization;5.1766733971601e-42!GO:0008104;protein localization;2.8606493679359e-41!GO:0031967;organelle envelope;2.02570225283272e-38!GO:0031975;envelope;4.7372854552821e-38!GO:0005634;nucleus;2.72805090142295e-37!GO:0031981;nuclear lumen;7.4921003723102e-35!GO:0046907;intracellular transport;5.06991701355816e-34!GO:0016071;mRNA metabolic process;2.80992689234635e-33!GO:0008380;RNA splicing;4.83645665316392e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30114635569652e-31!GO:0005740;mitochondrial envelope;5.5274076938033e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.26679993891193e-30!GO:0006886;intracellular protein transport;4.94034304639167e-30!GO:0006397;mRNA processing;1.3744894265299e-29!GO:0031966;mitochondrial membrane;4.21597755098878e-29!GO:0065003;macromolecular complex assembly;4.32734567193621e-29!GO:0019866;organelle inner membrane;1.95274902928089e-27!GO:0010467;gene expression;6.65493382411136e-27!GO:0005743;mitochondrial inner membrane;2.5253683541597e-26!GO:0044445;cytosolic part;4.90050037198493e-26!GO:0022607;cellular component assembly;1.19876053920561e-25!GO:0006119;oxidative phosphorylation;2.83615876460271e-25!GO:0043283;biopolymer metabolic process;2.86395654521419e-25!GO:0005783;endoplasmic reticulum;3.77573124829529e-24!GO:0051649;establishment of cellular localization;8.83448927237603e-24!GO:0005681;spliceosome;1.04407023314607e-23!GO:0051641;cellular localization;1.6435844931567e-23!GO:0006996;organelle organization and biogenesis;4.41367952597931e-23!GO:0044455;mitochondrial membrane part;8.34126122658462e-23!GO:0006457;protein folding;3.00564144261081e-22!GO:0015934;large ribosomal subunit;3.06851749501878e-22!GO:0043228;non-membrane-bound organelle;5.02950755640251e-22!GO:0043232;intracellular non-membrane-bound organelle;5.02950755640251e-22!GO:0015935;small ribosomal subunit;1.97308028747842e-21!GO:0005654;nucleoplasm;5.10996091492092e-21!GO:0048770;pigment granule;7.1965200940064e-20!GO:0042470;melanosome;7.1965200940064e-20!GO:0022618;protein-RNA complex assembly;1.02559217078821e-19!GO:0012505;endomembrane system;1.05393808603569e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.19263102776664e-19!GO:0031980;mitochondrial lumen;5.38557589393434e-19!GO:0005759;mitochondrial matrix;5.38557589393434e-19!GO:0005746;mitochondrial respiratory chain;1.02290999101497e-18!GO:0044432;endoplasmic reticulum part;4.34723272372495e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.87087878978551e-18!GO:0044451;nucleoplasm part;1.41797526991187e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.9613566560525e-17!GO:0016462;pyrophosphatase activity;3.64172496907607e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.10625005436573e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.3137750432636e-17!GO:0050136;NADH dehydrogenase (quinone) activity;7.71626274582807e-17!GO:0003954;NADH dehydrogenase activity;7.71626274582807e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.71626274582807e-17!GO:0005794;Golgi apparatus;8.02865096585498e-17!GO:0016192;vesicle-mediated transport;8.03118162132835e-17!GO:0043285;biopolymer catabolic process;1.65449227567436e-16!GO:0017111;nucleoside-triphosphatase activity;1.66093049890874e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.98003329235042e-16!GO:0012501;programmed cell death;5.249017163182e-16!GO:0051186;cofactor metabolic process;8.92910938644461e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.00704117108029e-15!GO:0044265;cellular macromolecule catabolic process;1.05510817405653e-15!GO:0006915;apoptosis;1.1306474313683e-15!GO:0009057;macromolecule catabolic process;1.59825739420382e-15!GO:0048193;Golgi vesicle transport;2.69992082137477e-15!GO:0005730;nucleolus;2.97915768086257e-15!GO:0030964;NADH dehydrogenase complex (quinone);4.23158843525834e-15!GO:0045271;respiratory chain complex I;4.23158843525834e-15!GO:0005747;mitochondrial respiratory chain complex I;4.23158843525834e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.24770099375788e-15!GO:0042773;ATP synthesis coupled electron transport;4.24770099375788e-15!GO:0006605;protein targeting;6.18458899729321e-15!GO:0008134;transcription factor binding;6.52770299237737e-15!GO:0051082;unfolded protein binding;7.00636514689206e-15!GO:0008135;translation factor activity, nucleic acid binding;1.06886593998769e-14!GO:0044248;cellular catabolic process;1.07394611185797e-14!GO:0008219;cell death;1.11307496168077e-14!GO:0016265;death;1.11307496168077e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.19144835122517e-14!GO:0005761;mitochondrial ribosome;1.20927963772678e-14!GO:0000313;organellar ribosome;1.20927963772678e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.37423950444671e-14!GO:0016874;ligase activity;1.48486779588515e-14!GO:0030163;protein catabolic process;1.76086394239722e-14!GO:0000166;nucleotide binding;2.11387205455889e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.43953480250113e-14!GO:0019941;modification-dependent protein catabolic process;1.00919872121317e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.00919872121317e-13!GO:0044257;cellular protein catabolic process;1.21586298781737e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.13198708061402e-13!GO:0009055;electron carrier activity;3.5739357923672e-13!GO:0006413;translational initiation;4.03330318470894e-13!GO:0006512;ubiquitin cycle;4.55601040355393e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.54459336261204e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;6.08709723488248e-13!GO:0000375;RNA splicing, via transesterification reactions;6.08709723488248e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.08709723488248e-13!GO:0003743;translation initiation factor activity;1.1512683042764e-12!GO:0005789;endoplasmic reticulum membrane;1.69460081292707e-12!GO:0006732;coenzyme metabolic process;3.54694296221834e-12!GO:0006259;DNA metabolic process;4.26010585065157e-12!GO:0048523;negative regulation of cellular process;1.16408517433795e-11!GO:0009259;ribonucleotide metabolic process;1.220970249533e-11!GO:0005793;ER-Golgi intermediate compartment;2.54474493087629e-11!GO:0006446;regulation of translational initiation;2.99930617212538e-11!GO:0042254;ribosome biogenesis and assembly;3.56972085201192e-11!GO:0006163;purine nucleotide metabolic process;3.9663807901426e-11!GO:0009056;catabolic process;4.17066882873888e-11!GO:0009150;purine ribonucleotide metabolic process;5.9235791894537e-11!GO:0043067;regulation of programmed cell death;6.75808946976134e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.75099945137777e-11!GO:0042981;regulation of apoptosis;9.41435421597944e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.41230437753904e-10!GO:0051246;regulation of protein metabolic process;1.52613435163371e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.04195525636066e-10!GO:0006164;purine nucleotide biosynthetic process;2.46141759424725e-10!GO:0048519;negative regulation of biological process;2.66669959235437e-10!GO:0008565;protein transporter activity;2.78066129574862e-10!GO:0009260;ribonucleotide biosynthetic process;2.82604784929268e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.5134457779886e-10!GO:0043412;biopolymer modification;3.70836650081337e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.98063576741715e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.3580274634336e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.87421533299556e-10!GO:0017076;purine nucleotide binding;6.67739127835338e-10!GO:0016604;nuclear body;7.71142451651222e-10!GO:0009141;nucleoside triphosphate metabolic process;8.91235072307379e-10!GO:0032553;ribonucleotide binding;8.98667569700855e-10!GO:0032555;purine ribonucleotide binding;8.98667569700855e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.13004390177722e-10!GO:0009144;purine nucleoside triphosphate metabolic process;9.13004390177722e-10!GO:0016491;oxidoreductase activity;1.34414325892375e-09!GO:0043069;negative regulation of programmed cell death;1.71333835602492e-09!GO:0015986;ATP synthesis coupled proton transport;2.05214836224866e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.05214836224866e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.50045691386323e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.50045691386323e-09!GO:0043066;negative regulation of apoptosis;3.90216094090339e-09!GO:0006464;protein modification process;3.978549931118e-09!GO:0006913;nucleocytoplasmic transport;4.08104915396996e-09!GO:0007049;cell cycle;4.57588527058917e-09!GO:0003712;transcription cofactor activity;5.23292080501923e-09!GO:0046034;ATP metabolic process;5.43783309480064e-09!GO:0006916;anti-apoptosis;5.83064378208479e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.54017228904327e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.54017228904327e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.80883905741896e-09!GO:0009060;aerobic respiration;7.12090943598681e-09!GO:0051169;nuclear transport;7.12090943598681e-09!GO:0003676;nucleic acid binding;7.42047927217237e-09!GO:0019829;cation-transporting ATPase activity;8.0010354972074e-09!GO:0005768;endosome;8.38527373099906e-09!GO:0005635;nuclear envelope;1.10852011179763e-08!GO:0017038;protein import;1.19608371147296e-08!GO:0005773;vacuole;1.96571686845589e-08!GO:0006461;protein complex assembly;2.01556635764185e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.19515808101454e-08!GO:0045333;cellular respiration;2.42045430842849e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.77918584910498e-08!GO:0006754;ATP biosynthetic process;3.15749277745991e-08!GO:0006753;nucleoside phosphate metabolic process;3.15749277745991e-08!GO:0016607;nuclear speck;3.63389468822458e-08!GO:0003924;GTPase activity;3.92560254849127e-08!GO:0016887;ATPase activity;4.32189834193508e-08!GO:0006399;tRNA metabolic process;4.65025002974109e-08!GO:0051188;cofactor biosynthetic process;5.26762250445364e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.732882877973e-08!GO:0008639;small protein conjugating enzyme activity;6.28822691449538e-08!GO:0042623;ATPase activity, coupled;6.30954467094434e-08!GO:0031965;nuclear membrane;6.7436820410577e-08!GO:0048522;positive regulation of cellular process;6.82677301863156e-08!GO:0005788;endoplasmic reticulum lumen;6.86120040763197e-08!GO:0019787;small conjugating protein ligase activity;7.21969826262206e-08!GO:0030120;vesicle coat;9.81352256340729e-08!GO:0030662;coated vesicle membrane;9.81352256340729e-08!GO:0009117;nucleotide metabolic process;1.02701407812603e-07!GO:0004842;ubiquitin-protein ligase activity;1.13592364787438e-07!GO:0044453;nuclear membrane part;1.28901667153259e-07!GO:0016787;hydrolase activity;1.67294622182027e-07!GO:0043687;post-translational protein modification;2.08846200733907e-07!GO:0016070;RNA metabolic process;2.43656722876732e-07!GO:0000323;lytic vacuole;2.48008106761877e-07!GO:0005764;lysosome;2.48008106761877e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.52185096014924e-07!GO:0006091;generation of precursor metabolites and energy;2.58134570199124e-07!GO:0007005;mitochondrion organization and biogenesis;2.80113141351241e-07!GO:0051726;regulation of cell cycle;3.1108553838825e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.1260594251792e-07!GO:0000074;regulation of progression through cell cycle;3.16326700180485e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.27907730537681e-07!GO:0006364;rRNA processing;3.74848757002228e-07!GO:0048475;coated membrane;4.01340109344919e-07!GO:0030117;membrane coat;4.01340109344919e-07!GO:0005524;ATP binding;4.5195430211671e-07!GO:0044431;Golgi apparatus part;4.5195430211671e-07!GO:0016072;rRNA metabolic process;4.6702985074039e-07!GO:0031252;leading edge;5.08875857794922e-07!GO:0006099;tricarboxylic acid cycle;5.31765036915455e-07!GO:0046356;acetyl-CoA catabolic process;5.31765036915455e-07!GO:0006950;response to stress;5.63109411762553e-07!GO:0008026;ATP-dependent helicase activity;6.0300303629264e-07!GO:0030554;adenyl nucleotide binding;6.78747117242508e-07!GO:0005770;late endosome;7.231420240844e-07!GO:0006974;response to DNA damage stimulus;7.47630299762603e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.47630299762603e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.47630299762603e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.47630299762603e-07!GO:0032559;adenyl ribonucleotide binding;7.57215684453487e-07!GO:0016881;acid-amino acid ligase activity;8.26314903865007e-07!GO:0004386;helicase activity;8.95056976547972e-07!GO:0045259;proton-transporting ATP synthase complex;1.05242048344475e-06!GO:0043038;amino acid activation;1.18064081871565e-06!GO:0006418;tRNA aminoacylation for protein translation;1.18064081871565e-06!GO:0043039;tRNA aminoacylation;1.18064081871565e-06!GO:0031988;membrane-bound vesicle;1.32261055966253e-06!GO:0006084;acetyl-CoA metabolic process;1.35446924489675e-06!GO:0051187;cofactor catabolic process;1.53466050839725e-06!GO:0016853;isomerase activity;1.8785166587265e-06!GO:0022402;cell cycle process;1.98498837989403e-06!GO:0006752;group transfer coenzyme metabolic process;2.24550202796369e-06!GO:0044440;endosomal part;2.2583871402988e-06!GO:0010008;endosome membrane;2.2583871402988e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.38441706445533e-06!GO:0004298;threonine endopeptidase activity;2.46607371488475e-06!GO:0009108;coenzyme biosynthetic process;2.6537166905061e-06!GO:0051170;nuclear import;2.8161864659407e-06!GO:0006366;transcription from RNA polymerase II promoter;2.82440275317238e-06!GO:0007243;protein kinase cascade;2.88608835061984e-06!GO:0000245;spliceosome assembly;3.05855926989632e-06!GO:0009109;coenzyme catabolic process;3.67960978146539e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.69147768876128e-06!GO:0031982;vesicle;3.87603415911058e-06!GO:0065002;intracellular protein transport across a membrane;3.9210020345328e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.25670406367678e-06!GO:0016859;cis-trans isomerase activity;4.43620167059351e-06!GO:0048518;positive regulation of biological process;4.58586651060052e-06!GO:0006606;protein import into nucleus;5.11714006207717e-06!GO:0005643;nuclear pore;5.89041371280584e-06!GO:0005798;Golgi-associated vesicle;6.74695225810685e-06!GO:0019843;rRNA binding;7.12234908068439e-06!GO:0031410;cytoplasmic vesicle;7.36548679132478e-06!GO:0065004;protein-DNA complex assembly;8.15774318496048e-06!GO:0005525;GTP binding;9.02093739722714e-06!GO:0005762;mitochondrial large ribosomal subunit;9.56027342325426e-06!GO:0000315;organellar large ribosomal subunit;9.56027342325426e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.00728037860214e-05!GO:0005667;transcription factor complex;1.41768256799655e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.47030385303587e-05!GO:0050794;regulation of cellular process;1.60161780407574e-05!GO:0006613;cotranslational protein targeting to membrane;1.7294812432095e-05!GO:0006323;DNA packaging;2.26010723508302e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.32758649799078e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.38683128928146e-05!GO:0000139;Golgi membrane;2.5673814307762e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.59670773399008e-05!GO:0005769;early endosome;2.71839092267503e-05!GO:0051789;response to protein stimulus;2.80351019207946e-05!GO:0006986;response to unfolded protein;2.80351019207946e-05!GO:0000278;mitotic cell cycle;2.9056660925862e-05!GO:0006333;chromatin assembly or disassembly;3.52424313798322e-05!GO:0006281;DNA repair;3.75030171280945e-05!GO:0045454;cell redox homeostasis;4.2949235613216e-05!GO:0032446;protein modification by small protein conjugation;4.84260650270217e-05!GO:0046930;pore complex;5.0799179173563e-05!GO:0003713;transcription coactivator activity;5.08050114872434e-05!GO:0006793;phosphorus metabolic process;5.39686284825083e-05!GO:0006796;phosphate metabolic process;5.39686284825083e-05!GO:0030867;rough endoplasmic reticulum membrane;5.95712017814163e-05!GO:0009967;positive regulation of signal transduction;5.99928834284597e-05!GO:0009719;response to endogenous stimulus;6.02202891931034e-05!GO:0016044;membrane organization and biogenesis;6.05857039643329e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;6.6777497370519e-05!GO:0031968;organelle outer membrane;7.03103491367876e-05!GO:0031324;negative regulation of cellular metabolic process;7.26189124573886e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.31959710688888e-05!GO:0044262;cellular carbohydrate metabolic process;7.65743283350471e-05!GO:0045786;negative regulation of progression through cell cycle;7.9562514827105e-05!GO:0030133;transport vesicle;8.76406629551898e-05!GO:0032561;guanyl ribonucleotide binding;8.78670284168104e-05!GO:0019001;guanyl nucleotide binding;8.78670284168104e-05!GO:0016567;protein ubiquitination;8.9040262288135e-05!GO:0005905;coated pit;9.9374886492856e-05!GO:0003714;transcription corepressor activity;0.000105392070423464!GO:0019867;outer membrane;0.000105973090953643!GO:0043021;ribonucleoprotein binding;0.000117274476635638!GO:0003724;RNA helicase activity;0.000118728121953453!GO:0009165;nucleotide biosynthetic process;0.000118813269977373!GO:0016564;transcription repressor activity;0.000121008813081579!GO:0033116;ER-Golgi intermediate compartment membrane;0.000121144231910815!GO:0030029;actin filament-based process;0.000134658875844523!GO:0008654;phospholipid biosynthetic process;0.000137654642699971!GO:0051276;chromosome organization and biogenesis;0.000150197212194779!GO:0045045;secretory pathway;0.000157979670936345!GO:0050657;nucleic acid transport;0.000161201737483654!GO:0051236;establishment of RNA localization;0.000161201737483654!GO:0050658;RNA transport;0.000161201737483654!GO:0003697;single-stranded DNA binding;0.000165785185224614!GO:0006612;protein targeting to membrane;0.000169571317745146!GO:0006403;RNA localization;0.000176441529073975!GO:0016310;phosphorylation;0.000194488663616204!GO:0000314;organellar small ribosomal subunit;0.000213970907841923!GO:0005763;mitochondrial small ribosomal subunit;0.000213970907841923!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000215258123320461!GO:0008361;regulation of cell size;0.000218749679339296!GO:0001558;regulation of cell growth;0.000228388217578745!GO:0048468;cell development;0.000231403601753453!GO:0050789;regulation of biological process;0.000231932278908193!GO:0006334;nucleosome assembly;0.00023871570087127!GO:0009892;negative regulation of metabolic process;0.000256139319610451!GO:0005741;mitochondrial outer membrane;0.000258580583778879!GO:0005048;signal sequence binding;0.000294833719687168!GO:0016779;nucleotidyltransferase activity;0.000301837494640678!GO:0016049;cell growth;0.00030279521016563!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000310831841270387!GO:0015399;primary active transmembrane transporter activity;0.000310831841270387!GO:0006082;organic acid metabolic process;0.000314251468637416!GO:0005885;Arp2/3 protein complex;0.000315329603402833!GO:0016563;transcription activator activity;0.000326810562899855!GO:0019752;carboxylic acid metabolic process;0.000339583520941536!GO:0008250;oligosaccharyl transferase complex;0.000364820227035485!GO:0004576;oligosaccharyl transferase activity;0.000380446810155315!GO:0000785;chromatin;0.000424539280300762!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000426003422385043!GO:0043566;structure-specific DNA binding;0.000426003422385043!GO:0032940;secretion by cell;0.000447443006300879!GO:0043623;cellular protein complex assembly;0.000457322210019607!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000458163386454186!GO:0031497;chromatin assembly;0.00052126742814981!GO:0006417;regulation of translation;0.000563217694531646!GO:0006414;translational elongation;0.000583407020163837!GO:0000151;ubiquitin ligase complex;0.000589493874135587!GO:0051427;hormone receptor binding;0.000600074606800631!GO:0007010;cytoskeleton organization and biogenesis;0.000706785944858186!GO:0030663;COPI coated vesicle membrane;0.000740123952862874!GO:0030126;COPI vesicle coat;0.000740123952862874!GO:0031072;heat shock protein binding;0.000741536020959768!GO:0019899;enzyme binding;0.000748177422212117!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000818925063080693!GO:0051920;peroxiredoxin activity;0.000822289139890027!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000822695990070907!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000873662808007828!GO:0043681;protein import into mitochondrion;0.000922271071643351!GO:0001726;ruffle;0.000929043355161186!GO:0009615;response to virus;0.000929454770339114!GO:0003899;DNA-directed RNA polymerase activity;0.000969685639576471!GO:0006891;intra-Golgi vesicle-mediated transport;0.000973940214552234!GO:0065009;regulation of a molecular function;0.000984334821527597!GO:0030137;COPI-coated vesicle;0.000985849592165045!GO:0018196;peptidyl-asparagine modification;0.00104536365551002!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00104536365551002!GO:0008092;cytoskeletal protein binding;0.00107993076522915!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116989688905761!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116989688905761!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116989688905761!GO:0035257;nuclear hormone receptor binding;0.00118994077230897!GO:0009889;regulation of biosynthetic process;0.00129067445613576!GO:0015630;microtubule cytoskeleton;0.00129067445613576!GO:0005791;rough endoplasmic reticulum;0.00129585569682524!GO:0006626;protein targeting to mitochondrion;0.00133746486788435!GO:0005694;chromosome;0.00133940980704687!GO:0043065;positive regulation of apoptosis;0.00139451289249575!GO:0043284;biopolymer biosynthetic process;0.00145188198271305!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00147370593968207!GO:0008186;RNA-dependent ATPase activity;0.00148545997754428!GO:0006839;mitochondrial transport;0.00150497613654716!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00152866901997861!GO:0051028;mRNA transport;0.00159664872580194!GO:0015992;proton transport;0.00176053297550601!GO:0031326;regulation of cellular biosynthetic process;0.00177266765594356!GO:0043068;positive regulation of programmed cell death;0.00184078110788097!GO:0016740;transferase activity;0.00185531624090405!GO:0006979;response to oxidative stress;0.00197901366088062!GO:0006818;hydrogen transport;0.00202925734682731!GO:0005774;vacuolar membrane;0.00208368562173774!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00213230391433886!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00213230391433886!GO:0048471;perinuclear region of cytoplasm;0.00214387456052458!GO:0006383;transcription from RNA polymerase III promoter;0.0023150322276545!GO:0030027;lamellipodium;0.00237864032628629!GO:0016272;prefoldin complex;0.00238151264836635!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00247120076484634!GO:0022890;inorganic cation transmembrane transporter activity;0.00270706168734291!GO:0046474;glycerophospholipid biosynthetic process;0.00270903469933471!GO:0008283;cell proliferation;0.00270908908084925!GO:0008610;lipid biosynthetic process;0.00307711378001758!GO:0030176;integral to endoplasmic reticulum membrane;0.0031760266385032!GO:0031902;late endosome membrane;0.0031812169754642!GO:0048500;signal recognition particle;0.0032075058981365!GO:0006118;electron transport;0.00326209891453896!GO:0016568;chromatin modification;0.00333618226837955!GO:0016481;negative regulation of transcription;0.00339713339950602!GO:0006260;DNA replication;0.00340491319876322!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00343178840224354!GO:0042802;identical protein binding;0.00346476731590972!GO:0044427;chromosomal part;0.00346742895195073!GO:0007006;mitochondrial membrane organization and biogenesis;0.00363368328153224!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00364080597904804!GO:0048487;beta-tubulin binding;0.00364118690822348!GO:0030658;transport vesicle membrane;0.00373451919120127!GO:0000087;M phase of mitotic cell cycle;0.00379074979246908!GO:0007040;lysosome organization and biogenesis;0.00379094959530959!GO:0004004;ATP-dependent RNA helicase activity;0.00390733018951333!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00408359229299198!GO:0015002;heme-copper terminal oxidase activity;0.00408359229299198!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00408359229299198!GO:0004129;cytochrome-c oxidase activity;0.00408359229299198!GO:0007067;mitosis;0.00434386852910278!GO:0051287;NAD binding;0.00452776291521161!GO:0004177;aminopeptidase activity;0.00461816740834614!GO:0008243;plasminogen activator activity;0.00465900195274848!GO:0003729;mRNA binding;0.00473206031995099!GO:0016197;endosome transport;0.00473206031995099!GO:0044452;nucleolar part;0.00478414874811137!GO:0006897;endocytosis;0.00480202581444341!GO:0010324;membrane invagination;0.00480202581444341!GO:0043492;ATPase activity, coupled to movement of substances;0.00484622230113888!GO:0051087;chaperone binding;0.00500609564494975!GO:0044437;vacuolar part;0.00555898667773955!GO:0008139;nuclear localization sequence binding;0.00564458475157673!GO:0046519;sphingoid metabolic process;0.00576133846543689!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00576133846543689!GO:0045047;protein targeting to ER;0.00576133846543689!GO:0030041;actin filament polymerization;0.00576133846543689!GO:0030880;RNA polymerase complex;0.00585277677479065!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00598093116451992!GO:0046483;heterocycle metabolic process;0.00608364421253628!GO:0030118;clathrin coat;0.00617413036210265!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00618134013900765!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00636224526451012!GO:0000059;protein import into nucleus, docking;0.00648884226764861!GO:0008180;signalosome;0.00654275522421739!GO:0017166;vinculin binding;0.00686693382637828!GO:0033673;negative regulation of kinase activity;0.00694504860005726!GO:0006469;negative regulation of protein kinase activity;0.00694504860005726!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00719686370960106!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00733332088036321!GO:0051540;metal cluster binding;0.00733763268352505!GO:0051536;iron-sulfur cluster binding;0.00733763268352505!GO:0005765;lysosomal membrane;0.00760955387977031!GO:0007033;vacuole organization and biogenesis;0.00762449809060732!GO:0008047;enzyme activator activity;0.00788706209987857!GO:0005869;dynactin complex;0.00791501369917659!GO:0008312;7S RNA binding;0.00791501369917659!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00795005368584968!GO:0051348;negative regulation of transferase activity;0.00825284414989804!GO:0006740;NADPH regeneration;0.00834978000559504!GO:0006098;pentose-phosphate shunt;0.00834978000559504!GO:0040008;regulation of growth;0.00834978000559504!GO:0051128;regulation of cellular component organization and biogenesis;0.00837514208503339!GO:0005684;U2-dependent spliceosome;0.00837730745484169!GO:0008033;tRNA processing;0.00838694075662631!GO:0030132;clathrin coat of coated pit;0.00855707507796596!GO:0008154;actin polymerization and/or depolymerization;0.00859734900691748!GO:0046489;phosphoinositide biosynthetic process;0.00861460809023363!GO:0050662;coenzyme binding;0.00861460809023363!GO:0046467;membrane lipid biosynthetic process;0.00862621707472589!GO:0005813;centrosome;0.00907739046272185!GO:0030127;COPII vesicle coat;0.00909157717944636!GO:0012507;ER to Golgi transport vesicle membrane;0.00909157717944636!GO:0008632;apoptotic program;0.00927712557150777!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00931510033989987!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00941717981385765!GO:0030134;ER to Golgi transport vesicle;0.00956244987647373!GO:0016363;nuclear matrix;0.00973559751952139!GO:0031901;early endosome membrane;0.00977903283756362!GO:0006520;amino acid metabolic process;0.00980970499959544!GO:0030660;Golgi-associated vesicle membrane;0.00989639135078252!GO:0065007;biological regulation;0.0101629602220453!GO:0006509;membrane protein ectodomain proteolysis;0.0107902916788164!GO:0033619;membrane protein proteolysis;0.0107902916788164!GO:0005862;muscle thin filament tropomyosin;0.011227631179096!GO:0006672;ceramide metabolic process;0.0112943602301554!GO:0007050;cell cycle arrest;0.0114683948726203!GO:0006892;post-Golgi vesicle-mediated transport;0.0115495876391026!GO:0003711;transcription elongation regulator activity;0.011852301380407!GO:0016126;sterol biosynthetic process;0.0123360341087826!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0123387297047731!GO:0000786;nucleosome;0.0124985433343473!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.012673263219315!GO:0000428;DNA-directed RNA polymerase complex;0.012673263219315!GO:0006917;induction of apoptosis;0.0127039465546969!GO:0006401;RNA catabolic process;0.0131430535171125!GO:0043022;ribosome binding;0.0131919681356782!GO:0046870;cadmium ion binding;0.0132924271398816!GO:0050811;GABA receptor binding;0.013563278717298!GO:0051101;regulation of DNA binding;0.013563278717298!GO:0045893;positive regulation of transcription, DNA-dependent;0.0137950093708781!GO:0006778;porphyrin metabolic process;0.0141519781057095!GO:0033013;tetrapyrrole metabolic process;0.0141519781057095!GO:0008320;protein transmembrane transporter activity;0.0148309843917077!GO:0030659;cytoplasmic vesicle membrane;0.0158817526988399!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0160039567850524!GO:0042168;heme metabolic process;0.0160901473921358!GO:0022406;membrane docking;0.0162561674072328!GO:0048278;vesicle docking;0.0162561674072328!GO:0012502;induction of programmed cell death;0.0166541339840554!GO:0007034;vacuolar transport;0.0168392766103058!GO:0022415;viral reproductive process;0.0169465804706507!GO:0005832;chaperonin-containing T-complex;0.0169516662061332!GO:0045941;positive regulation of transcription;0.0173146397918579!GO:0006595;polyamine metabolic process;0.0177414175074328!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0177414175074328!GO:0000339;RNA cap binding;0.0178142718901291!GO:0005815;microtubule organizing center;0.0179726573495153!GO:0051168;nuclear export;0.0182577992480562!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0188080790151997!GO:0051301;cell division;0.0191801471721441!GO:0030521;androgen receptor signaling pathway;0.0196172498743058!GO:0031529;ruffle organization and biogenesis;0.0202314891950761!GO:0006904;vesicle docking during exocytosis;0.0207920837408571!GO:0022884;macromolecule transmembrane transporter activity;0.0207920837408571!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0207920837408571!GO:0045792;negative regulation of cell size;0.021428427289316!GO:0003746;translation elongation factor activity;0.0217686424896432!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0219997508790714!GO:0030125;clathrin vesicle coat;0.0223173280088614!GO:0030665;clathrin coated vesicle membrane;0.0223173280088614!GO:0030308;negative regulation of cell growth;0.0223306597752473!GO:0051235;maintenance of localization;0.0223954644653909!GO:0022403;cell cycle phase;0.023008586708497!GO:0046822;regulation of nucleocytoplasmic transport;0.0232417233231213!GO:0006807;nitrogen compound metabolic process;0.023320501842525!GO:0048144;fibroblast proliferation;0.0236095014455186!GO:0048145;regulation of fibroblast proliferation;0.0236095014455186!GO:0006007;glucose catabolic process;0.0237171716350252!GO:0012506;vesicle membrane;0.0242544352552!GO:0006402;mRNA catabolic process;0.0242544352552!GO:0030119;AP-type membrane coat adaptor complex;0.0242544352552!GO:0005975;carbohydrate metabolic process;0.0248672835059677!GO:0006354;RNA elongation;0.0257785561466555!GO:0007162;negative regulation of cell adhesion;0.0267261219634676!GO:0000209;protein polyubiquitination;0.0271842690462262!GO:0006695;cholesterol biosynthetic process;0.0271964370112218!GO:0019079;viral genome replication;0.0273587895451111!GO:0019318;hexose metabolic process;0.0274100668312742!GO:0000049;tRNA binding;0.0275085817079877!GO:0009893;positive regulation of metabolic process;0.0275611308140181!GO:0051252;regulation of RNA metabolic process;0.0277768313012596!GO:0006650;glycerophospholipid metabolic process;0.0279840652971646!GO:0015036;disulfide oxidoreductase activity;0.0280647303967555!GO:0035258;steroid hormone receptor binding;0.0280647303967555!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0283588504297277!GO:0022408;negative regulation of cell-cell adhesion;0.0283588504297277!GO:0007021;tubulin folding;0.0290898992813194!GO:0043488;regulation of mRNA stability;0.0297587077325782!GO:0043487;regulation of RNA stability;0.0297587077325782!GO:0030032;lamellipodium biogenesis;0.0299985631238976!GO:0008637;apoptotic mitochondrial changes;0.0302392592374429!GO:0048660;regulation of smooth muscle cell proliferation;0.0302537775174527!GO:0015631;tubulin binding;0.0306143976487958!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0307200328091935!GO:0051329;interphase of mitotic cell cycle;0.0310513944630105!GO:0003690;double-stranded DNA binding;0.0321331340104444!GO:0003756;protein disulfide isomerase activity;0.0321494830704192!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0321494830704192!GO:0050790;regulation of catalytic activity;0.0324528574774509!GO:0005996;monosaccharide metabolic process;0.0325524597307054!GO:0031625;ubiquitin protein ligase binding;0.0328031914453557!GO:0048146;positive regulation of fibroblast proliferation;0.0328158024005413!GO:0044433;cytoplasmic vesicle part;0.032890942593435!GO:0016408;C-acyltransferase activity;0.0330905839264095!GO:0046426;negative regulation of JAK-STAT cascade;0.0334623735983174!GO:0006635;fatty acid beta-oxidation;0.0339367959555536!GO:0006352;transcription initiation;0.0342180996283678!GO:0031371;ubiquitin conjugating enzyme complex;0.034257244343646!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0343686875678502!GO:0030833;regulation of actin filament polymerization;0.034512297864499!GO:0045936;negative regulation of phosphate metabolic process;0.0347725382872025!GO:0032984;macromolecular complex disassembly;0.0352930729633886!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0355516988058293!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0355516988058293!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0357759465655624!GO:0006518;peptide metabolic process;0.036494033588422!GO:0051271;negative regulation of cell motility;0.0368777747653205!GO:0016860;intramolecular oxidoreductase activity;0.0370419592213456!GO:0000096;sulfur amino acid metabolic process;0.0370663121480529!GO:0006739;NADP metabolic process;0.0375590540626307!GO:0006779;porphyrin biosynthetic process;0.0378970768737523!GO:0033014;tetrapyrrole biosynthetic process;0.0378970768737523!GO:0008538;proteasome activator activity;0.0381063355420719!GO:0045892;negative regulation of transcription, DNA-dependent;0.0381667450274939!GO:0007264;small GTPase mediated signal transduction;0.0383812341916764!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0383812341916764!GO:0010257;NADH dehydrogenase complex assembly;0.0383812341916764!GO:0033108;mitochondrial respiratory chain complex assembly;0.0383812341916764!GO:0005149;interleukin-1 receptor binding;0.0383812341916764!GO:0008383;manganese superoxide dismutase activity;0.0395136027306513!GO:0001315;age-dependent response to reactive oxygen species;0.0395136027306513!GO:0006378;mRNA polyadenylation;0.0401053910565446!GO:0043433;negative regulation of transcription factor activity;0.0402791340539786!GO:0051539;4 iron, 4 sulfur cluster binding;0.0402972699993673!GO:0030031;cell projection biogenesis;0.0405480192596688!GO:0030131;clathrin adaptor complex;0.040953095659591!GO:0032507;maintenance of cellular protein localization;0.040953095659591!GO:0050681;androgen receptor binding;0.0412434598932227!GO:0003779;actin binding;0.0421163055887842!GO:0006783;heme biosynthetic process;0.0421163055887842!GO:0051090;regulation of transcription factor activity;0.0426770330815563!GO:0031418;L-ascorbic acid binding;0.0428146903233904!GO:0051098;regulation of binding;0.0436962640916758!GO:0004287;prolyl oligopeptidase activity;0.0437031066130169!GO:0001666;response to hypoxia;0.0437426270198202!GO:0018193;peptidyl-amino acid modification;0.0439524434271421!GO:0008147;structural constituent of bone;0.0444664793787143!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0451121782816904!GO:0009308;amine metabolic process;0.0451121782816904!GO:0030911;TPR domain binding;0.046010380468609!GO:0003678;DNA helicase activity;0.0462941423758198!GO:0035035;histone acetyltransferase binding;0.0464874863113659!GO:0044255;cellular lipid metabolic process;0.0470477255287144!GO:0006376;mRNA splice site selection;0.0470477255287144!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0470477255287144!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0472893910134817!GO:0030100;regulation of endocytosis;0.0475441324132468!GO:0001952;regulation of cell-matrix adhesion;0.0481590562512776!GO:0001953;negative regulation of cell-matrix adhesion;0.048192592158466!GO:0051059;NF-kappaB binding;0.0489215598285408!GO:0030508;thiol-disulfide exchange intermediate activity;0.0498600568195475!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0498600568195475 | |||
|sample_id=12642 | |sample_id=12642 | ||
|sample_note= | |sample_note= | ||
| Line 75: | Line 100: | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|time= 00hr00min | |||
|timecourse=AoSMC_response_to_FGF2 | |||
|top_motifs=ALX4:2.48836582536;NKX2-2,8:1.97348354946;PAX1,9:1.95743068532;UFEwm:1.80396823994;GCM1,2:1.75369336958;NKX3-1:1.65441400866;NKX3-2:1.43033883962;NFE2L1:1.34752566138;TP53:1.29905159063;EVI1:1.16015059888;HMGA1,2:1.12974797944;FOXL1:1.11610876972;HOX{A5,B5}:1.10711157714;XBP1:1.10545183647;TBP:1.09513094428;SRF:1.06548326891;FOXD3:1.04752991131;GLI1..3:1.04260269544;FOX{I1,J2}:1.02938437224;TAL1_TCF{3,4,12}:1.00529448591;CDC5L:0.972110148503;KLF4:0.945926432859;RXR{A,B,G}:0.930788104067;EBF1:0.923458286981;GZF1:0.837162350646;ZNF238:0.823541311021;ZBTB6:0.811204898561;HSF1,2:0.770436719077;TLX2:0.768326217675;TBX4,5:0.767361480307;EN1,2:0.750814623747;SPZ1:0.72818685701;DBP:0.683158799512;HMX1:0.645037429604;PAX4:0.605134091616;TLX1..3_NFIC{dimer}:0.591416321243;ONECUT1,2:0.590350480878;HOX{A4,D4}:0.561055208873;POU3F1..4:0.55507401973;TFAP4:0.525641662696;POU6F1:0.52081540836;NR3C1:0.519506593076;IKZF1:0.51375522958;GATA4:0.509134494696;SMAD1..7,9:0.443660734064;GFI1B:0.440508209201;MYBL2:0.436437592307;TEAD1:0.425832265891;PRDM1:0.423776625631;HLF:0.401437516271;NFATC1..3:0.393405313944;FOXM1:0.38821519924;NANOG{mouse}:0.321710858399;ZBTB16:0.304066430431;HOXA9_MEIS1:0.301522122216;PAX6:0.280001925564;HES1:0.266883345829;TEF:0.261255439221;ZNF384:0.244786891535;ZIC1..3:0.236990643016;BACH2:0.222350583033;YY1:0.1942845786;ESR1:0.184422917566;PPARG:0.166216537903;CDX1,2,4:0.163889361472;ATF6:0.160262695166;bHLH_family:0.152841007201;ALX1:0.12834963353;TFCP2:0.118911631367;POU1F1:0.115645954411;SOX17:0.114138372753;IRF1,2:0.10503125889;GTF2I:0.10314762808;NFKB1_REL_RELA:0.0990716116869;ARID5B:0.0952776310166;LHX3,4:0.0940217994475;MAFB:0.0834010638474;NFIX:0.0760517578859;NFE2L2:0.0709864735671;GTF2A1,2:0.0701321172406;FOXP3:0.0650450909011;STAT2,4,6:0.0610143361077;MTF1:0.0543503000374;AR:0.0506405621568;FOS_FOS{B,L1}_JUN{B,D}:0.0485009847871;NR1H4:0.0366838990641;FOSL2:-0.00882302654784;IKZF2:-0.0139828205309;RXRA_VDR{dimer}:-0.0297507821095;JUN:-0.038885888202;NKX2-1,4:-0.046947060758;MZF1:-0.0553424512936;BPTF:-0.05634720505;AIRE:-0.0605025629034;SOX2:-0.0778341887252;NKX6-1,2:-0.0817570906049;ELF1,2,4:-0.0897614225983;ADNP_IRX_SIX_ZHX:-0.090591254356;MYFfamily:-0.108763292398;ETS1,2:-0.115830478193;SPI1:-0.118655439732;HIF1A:-0.126985056798;RUNX1..3:-0.128421623491;HNF1A:-0.129674902208;PAX5:-0.13756770503;PITX1..3:-0.166444117891;HNF4A_NR2F1,2:-0.183209850116;DMAP1_NCOR{1,2}_SMARC:-0.194118961168;NFE2:-0.212319630788;HAND1,2:-0.213079289734;ELK1,4_GABP{A,B1}:-0.22775270691;FOX{D1,D2}:-0.232091049843;PAX8:-0.23546513817;SPIB:-0.236459548697;MEF2{A,B,C,D}:-0.242183570002;REST:-0.25263052626;MAZ:-0.294215590532;IRF7:-0.308410478833;POU5F1:-0.31668119007;LEF1_TCF7_TCF7L1,2:-0.320559875078;PATZ1:-0.338194545902;ZNF423:-0.362087088102;NKX2-3_NKX2-5:-0.363561899792;CRX:-0.366721414447;SOX5:-0.369281195169;STAT1,3:-0.3784103558;PAX2:-0.387172110336;NFIL3:-0.392884229432;ESRRA:-0.39295222337;MED-1{core}:-0.394305380143;CEBPA,B_DDIT3:-0.414491360967;RREB1:-0.423792746112;AHR_ARNT_ARNT2:-0.43449750836;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.469609253683;MYB:-0.47897072571;ZEB1:-0.481451325765;NR6A1:-0.484287703806;T:-0.500591663176;HBP1_HMGB_SSRP1_UBTF:-0.503121079138;MTE{core}:-0.511870823895;SNAI1..3:-0.520330593867;TGIF1:-0.538458031246;FOXP1:-0.538508300998;ATF5_CREB3:-0.542981063401;SOX{8,9,10}:-0.545302021279;NRF1:-0.553067309598;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.562666964099;CUX2:-0.569037413423;POU2F1..3:-0.569832790108;ZNF148:-0.572076296385;OCT4_SOX2{dimer}:-0.581818507233;FOXQ1:-0.584692812191;RFX1:-0.598096413275;SREBF1,2:-0.602242123199;NHLH1,2:-0.605729348279;GFI1:-0.610061431517;ZNF143:-0.610702863428;FOXO1,3,4:-0.614798858258;XCPE1{core}:-0.632026888478;FOXN1:-0.635166016974;PRRX1,2:-0.646903268718;HIC1:-0.672207433021;TOPORS:-0.684822759589;RFX2..5_RFXANK_RFXAP:-0.691983340914;TFAP2B:-0.706937955374;E2F1..5:-0.710206668396;LMO2:-0.721909416982;CREB1:-0.722435041655;FOX{F1,F2,J1}:-0.729020420128;PBX1:-0.735006960658;TFAP2{A,C}:-0.748646766363;ATF2:-0.769378222514;HOX{A6,A7,B6,B7}:-0.771712782938;ZFP161:-0.777729400087;PAX3,7:-0.779000587866;SP1:-0.892543147414;STAT5{A,B}:-0.903536325159;VSX1,2:-1.00167881664;ATF4:-1.04460122619;GATA6:-1.05411769914;NR5A1,2:-1.06981853724;EGR1..3:-1.08516016692;RORA:-1.17043420738;MYOD1:-1.21462999274;TFDP1:-1.23849321217;NFY{A,B,C}:-1.31057254854;FOXA2:-1.37107569463;PDX1:-1.39334595259;RBPJ:-1.42575156607;NANOG:-1.44233959546;EP300:-1.45193564633;BREu{core}:-1.61182636715 | |top_motifs=ALX4:2.48836582536;NKX2-2,8:1.97348354946;PAX1,9:1.95743068532;UFEwm:1.80396823994;GCM1,2:1.75369336958;NKX3-1:1.65441400866;NKX3-2:1.43033883962;NFE2L1:1.34752566138;TP53:1.29905159063;EVI1:1.16015059888;HMGA1,2:1.12974797944;FOXL1:1.11610876972;HOX{A5,B5}:1.10711157714;XBP1:1.10545183647;TBP:1.09513094428;SRF:1.06548326891;FOXD3:1.04752991131;GLI1..3:1.04260269544;FOX{I1,J2}:1.02938437224;TAL1_TCF{3,4,12}:1.00529448591;CDC5L:0.972110148503;KLF4:0.945926432859;RXR{A,B,G}:0.930788104067;EBF1:0.923458286981;GZF1:0.837162350646;ZNF238:0.823541311021;ZBTB6:0.811204898561;HSF1,2:0.770436719077;TLX2:0.768326217675;TBX4,5:0.767361480307;EN1,2:0.750814623747;SPZ1:0.72818685701;DBP:0.683158799512;HMX1:0.645037429604;PAX4:0.605134091616;TLX1..3_NFIC{dimer}:0.591416321243;ONECUT1,2:0.590350480878;HOX{A4,D4}:0.561055208873;POU3F1..4:0.55507401973;TFAP4:0.525641662696;POU6F1:0.52081540836;NR3C1:0.519506593076;IKZF1:0.51375522958;GATA4:0.509134494696;SMAD1..7,9:0.443660734064;GFI1B:0.440508209201;MYBL2:0.436437592307;TEAD1:0.425832265891;PRDM1:0.423776625631;HLF:0.401437516271;NFATC1..3:0.393405313944;FOXM1:0.38821519924;NANOG{mouse}:0.321710858399;ZBTB16:0.304066430431;HOXA9_MEIS1:0.301522122216;PAX6:0.280001925564;HES1:0.266883345829;TEF:0.261255439221;ZNF384:0.244786891535;ZIC1..3:0.236990643016;BACH2:0.222350583033;YY1:0.1942845786;ESR1:0.184422917566;PPARG:0.166216537903;CDX1,2,4:0.163889361472;ATF6:0.160262695166;bHLH_family:0.152841007201;ALX1:0.12834963353;TFCP2:0.118911631367;POU1F1:0.115645954411;SOX17:0.114138372753;IRF1,2:0.10503125889;GTF2I:0.10314762808;NFKB1_REL_RELA:0.0990716116869;ARID5B:0.0952776310166;LHX3,4:0.0940217994475;MAFB:0.0834010638474;NFIX:0.0760517578859;NFE2L2:0.0709864735671;GTF2A1,2:0.0701321172406;FOXP3:0.0650450909011;STAT2,4,6:0.0610143361077;MTF1:0.0543503000374;AR:0.0506405621568;FOS_FOS{B,L1}_JUN{B,D}:0.0485009847871;NR1H4:0.0366838990641;FOSL2:-0.00882302654784;IKZF2:-0.0139828205309;RXRA_VDR{dimer}:-0.0297507821095;JUN:-0.038885888202;NKX2-1,4:-0.046947060758;MZF1:-0.0553424512936;BPTF:-0.05634720505;AIRE:-0.0605025629034;SOX2:-0.0778341887252;NKX6-1,2:-0.0817570906049;ELF1,2,4:-0.0897614225983;ADNP_IRX_SIX_ZHX:-0.090591254356;MYFfamily:-0.108763292398;ETS1,2:-0.115830478193;SPI1:-0.118655439732;HIF1A:-0.126985056798;RUNX1..3:-0.128421623491;HNF1A:-0.129674902208;PAX5:-0.13756770503;PITX1..3:-0.166444117891;HNF4A_NR2F1,2:-0.183209850116;DMAP1_NCOR{1,2}_SMARC:-0.194118961168;NFE2:-0.212319630788;HAND1,2:-0.213079289734;ELK1,4_GABP{A,B1}:-0.22775270691;FOX{D1,D2}:-0.232091049843;PAX8:-0.23546513817;SPIB:-0.236459548697;MEF2{A,B,C,D}:-0.242183570002;REST:-0.25263052626;MAZ:-0.294215590532;IRF7:-0.308410478833;POU5F1:-0.31668119007;LEF1_TCF7_TCF7L1,2:-0.320559875078;PATZ1:-0.338194545902;ZNF423:-0.362087088102;NKX2-3_NKX2-5:-0.363561899792;CRX:-0.366721414447;SOX5:-0.369281195169;STAT1,3:-0.3784103558;PAX2:-0.387172110336;NFIL3:-0.392884229432;ESRRA:-0.39295222337;MED-1{core}:-0.394305380143;CEBPA,B_DDIT3:-0.414491360967;RREB1:-0.423792746112;AHR_ARNT_ARNT2:-0.43449750836;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.469609253683;MYB:-0.47897072571;ZEB1:-0.481451325765;NR6A1:-0.484287703806;T:-0.500591663176;HBP1_HMGB_SSRP1_UBTF:-0.503121079138;MTE{core}:-0.511870823895;SNAI1..3:-0.520330593867;TGIF1:-0.538458031246;FOXP1:-0.538508300998;ATF5_CREB3:-0.542981063401;SOX{8,9,10}:-0.545302021279;NRF1:-0.553067309598;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.562666964099;CUX2:-0.569037413423;POU2F1..3:-0.569832790108;ZNF148:-0.572076296385;OCT4_SOX2{dimer}:-0.581818507233;FOXQ1:-0.584692812191;RFX1:-0.598096413275;SREBF1,2:-0.602242123199;NHLH1,2:-0.605729348279;GFI1:-0.610061431517;ZNF143:-0.610702863428;FOXO1,3,4:-0.614798858258;XCPE1{core}:-0.632026888478;FOXN1:-0.635166016974;PRRX1,2:-0.646903268718;HIC1:-0.672207433021;TOPORS:-0.684822759589;RFX2..5_RFXANK_RFXAP:-0.691983340914;TFAP2B:-0.706937955374;E2F1..5:-0.710206668396;LMO2:-0.721909416982;CREB1:-0.722435041655;FOX{F1,F2,J1}:-0.729020420128;PBX1:-0.735006960658;TFAP2{A,C}:-0.748646766363;ATF2:-0.769378222514;HOX{A6,A7,B6,B7}:-0.771712782938;ZFP161:-0.777729400087;PAX3,7:-0.779000587866;SP1:-0.892543147414;STAT5{A,B}:-0.903536325159;VSX1,2:-1.00167881664;ATF4:-1.04460122619;GATA6:-1.05411769914;NR5A1,2:-1.06981853724;EGR1..3:-1.08516016692;RORA:-1.17043420738;MYOD1:-1.21462999274;TFDP1:-1.23849321217;NFY{A,B,C}:-1.31057254854;FOXA2:-1.37107569463;PDX1:-1.39334595259;RBPJ:-1.42575156607;NANOG:-1.44233959546;EP300:-1.45193564633;BREu{core}:-1.61182636715 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12642-134G5;search_select_hide=table117:FF:12642-134G5 | |||
}} | }} | ||
Latest revision as of 18:41, 4 June 2020
| Name: | Aortic smooth muscle cell response to FGF2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13339 |
| Sample type: | time courses |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13339
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13339
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.103 |
| 10 | 10 | 0.203 |
| 100 | 100 | 0.447 |
| 101 | 101 | 0.832 |
| 102 | 102 | 0.93 |
| 103 | 103 | 0.12 |
| 104 | 104 | 0.978 |
| 105 | 105 | 0.344 |
| 106 | 106 | 0.0348 |
| 107 | 107 | 0.086 |
| 108 | 108 | 0.189 |
| 109 | 109 | 0.183 |
| 11 | 11 | 0.0398 |
| 110 | 110 | 0.0607 |
| 111 | 111 | 0.0821 |
| 112 | 112 | 0.0908 |
| 113 | 113 | 0.245 |
| 114 | 114 | 0.013 |
| 115 | 115 | 0.082 |
| 116 | 116 | 0.107 |
| 117 | 117 | 0.185 |
| 118 | 118 | 0.295 |
| 119 | 119 | 0.0641 |
| 12 | 12 | 0.968 |
| 120 | 120 | 0.0229 |
| 121 | 121 | 0.419 |
| 122 | 122 | 0.0594 |
| 123 | 123 | 0.657 |
| 124 | 124 | 0.95 |
| 125 | 125 | 0.265 |
| 126 | 126 | 0.368 |
| 127 | 127 | 0.68 |
| 128 | 128 | 0.0519 |
| 129 | 129 | 0.533 |
| 13 | 13 | 0.287 |
| 130 | 130 | 0.193 |
| 131 | 131 | 0.972 |
| 132 | 132 | 0.763 |
| 133 | 133 | 0.734 |
| 134 | 134 | 0.966 |
| 135 | 135 | 0.0999 |
| 136 | 136 | 0.853 |
| 137 | 137 | 0.603 |
| 138 | 138 | 0.859 |
| 139 | 139 | 0.522 |
| 14 | 14 | 0.77 |
| 140 | 140 | 0.16 |
| 141 | 141 | 0.731 |
| 142 | 142 | 0.757 |
| 143 | 143 | 0.039 |
| 144 | 144 | 0.329 |
| 145 | 145 | 0.158 |
| 146 | 146 | 0.587 |
| 147 | 147 | 0.232 |
| 148 | 148 | 0.00476 |
| 149 | 149 | 0.0358 |
| 15 | 15 | 0.345 |
| 150 | 150 | 0.212 |
| 151 | 151 | 0.632 |
| 152 | 152 | 0.133 |
| 153 | 153 | 0.836 |
| 154 | 154 | 0.928 |
| 155 | 155 | 0.141 |
| 156 | 156 | 0.549 |
| 157 | 157 | 0.276 |
| 158 | 158 | 0.0579 |
| 159 | 159 | 0.186 |
| 16 | 16 | 0.0425 |
| 160 | 160 | 0.105 |
| 161 | 161 | 0.777 |
| 162 | 162 | 0.173 |
| 163 | 163 | 0.815 |
| 164 | 164 | 0.0364 |
| 165 | 165 | 0.317 |
| 166 | 166 | 0.395 |
| 167 | 167 | 0.208 |
| 168 | 168 | 0.439 |
| 169 | 169 | 0.0375 |
| 17 | 17 | 0.0771 |
| 18 | 18 | 0.0526 |
| 19 | 19 | 0.0845 |
| 2 | 2 | 0.533 |
| 20 | 20 | 0.887 |
| 21 | 21 | 0.269 |
| 22 | 22 | 0.425 |
| 23 | 23 | 0.209 |
| 24 | 24 | 0.637 |
| 25 | 25 | 0.526 |
| 26 | 26 | 0.0931 |
| 27 | 27 | 0.226 |
| 28 | 28 | 0.599 |
| 29 | 29 | 0.0788 |
| 3 | 3 | 0.0772 |
| 30 | 30 | 0.786 |
| 31 | 31 | 0.472 |
| 32 | 32 | 2.55176e-5 |
| 33 | 33 | 0.414 |
| 34 | 34 | 0.803 |
| 35 | 35 | 0.0856 |
| 36 | 36 | 0.129 |
| 37 | 37 | 0.0272 |
| 38 | 38 | 0.667 |
| 39 | 39 | 0.198 |
| 4 | 4 | 0.914 |
| 40 | 40 | 0.515 |
| 41 | 41 | 0.854 |
| 42 | 42 | 0.721 |
| 43 | 43 | 0.121 |
| 44 | 44 | 0.018 |
| 45 | 45 | 0.835 |
| 46 | 46 | 0.0296 |
| 47 | 47 | 0.241 |
| 48 | 48 | 0.248 |
| 49 | 49 | 0.41 |
| 5 | 5 | 0.441 |
| 50 | 50 | 0.672 |
| 51 | 51 | 0.577 |
| 52 | 52 | 0.532 |
| 53 | 53 | 0.558 |
| 54 | 54 | 0.564 |
| 55 | 55 | 0.353 |
| 56 | 56 | 0.721 |
| 57 | 57 | 0.304 |
| 58 | 58 | 0.901 |
| 59 | 59 | 0.0702 |
| 6 | 6 | 0.504 |
| 60 | 60 | 0.238 |
| 61 | 61 | 0.794 |
| 62 | 62 | 0.285 |
| 63 | 63 | 0.141 |
| 64 | 64 | 0.519 |
| 65 | 65 | 0.246 |
| 66 | 66 | 0.32 |
| 67 | 67 | 0.371 |
| 68 | 68 | 0.629 |
| 69 | 69 | 0.393 |
| 7 | 7 | 0.959 |
| 70 | 70 | 0.0177 |
| 71 | 71 | 0.0543 |
| 72 | 72 | 0.737 |
| 73 | 73 | 0.0399 |
| 74 | 74 | 0.049 |
| 75 | 75 | 0.196 |
| 76 | 76 | 0.594 |
| 77 | 77 | 0.0269 |
| 78 | 78 | 0.643 |
| 79 | 79 | 5.26115e-4 |
| 8 | 8 | 0.0192 |
| 80 | 80 | 0.617 |
| 81 | 81 | 0.254 |
| 82 | 82 | 0.0968 |
| 83 | 83 | 0.597 |
| 84 | 84 | 0.998 |
| 85 | 85 | 0.0416 |
| 86 | 86 | 0.438 |
| 87 | 87 | 0.12 |
| 88 | 88 | 0.178 |
| 89 | 89 | 0.0289 |
| 9 | 9 | 0.467 |
| 90 | 90 | 0.0408 |
| 91 | 91 | 0.244 |
| 92 | 92 | 0.161 |
| 93 | 93 | 0.682 |
| 94 | 94 | 0.174 |
| 95 | 95 | 0.268 |
| 96 | 96 | 0.535 |
| 97 | 97 | 0.506 |
| 98 | 98 | 0.858 |
| 99 | 99 | 0.08 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13339
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000546 human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
