FF:12245-129H4: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:12245-129H4
|name=Eosinophils, donor2 (heparinase treated)
|sample_id=12245
|rna_tube_id=129H4
|rna_box=129
|rna_position=H4
|sample_cell_lot=lot:753...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005123 | ||
| | |accession_numbers=CAGE;DRX008076;DRR008948;DRZ000373;DRZ001758;DRZ011723;DRZ013108 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000771 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000054,FF:0000249 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3721.48!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.05!1125.40!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.52!1732.91!MXD1;;chr10:35484053..35484076,+!p1@CREM!2.43!648.36!CREM;;chr19:45252008..45252024,+!p2@BCL3!2.32!652.31!BCL3;;chr11:47400062..47400077,-!p2@SPI1!2.32!208.21!SPI1;;chr8:22550982..22550999,-!p1@EGR3!2.28!513.94!EGR3;;chr14:35873947..35873965,-!p1@NFKBIA!2.27!10769.10!NFKBIA;;chr5:142782823..142782854,-!p3@NR3C1!2.21!225.34!NR3C1;;chr11:47399947..47399961,-!p3@SPI1!2.21!160.77!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!2.19!372.94!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.18!326.82!NR4A3;;chr10:104154415..104154434,+!p5@NFKB2!2.17!146.28!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!2.13!664.17!NR4A2;;chr19:36391434..36391450,-!p1@NFKBID!2.13!254.34!NFKBID;;chr11:47400032..47400043,-!p5@SPI1!2.11!129.14!SPI1;;chr10:104155659..104155676,+!p4@NFKB2!2.10!152.87!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!2.05!1029.21!NFKBIE;;chr6:12011943..12012015,+!p2@HIVEP1!2.04!334.72!HIVEP1;;chr19:45251395..45251432,+!p8@BCL3!2.04!108.06!BCL3;;chr10:104155480..104155534,+!p2@NFKB2!2.03!656.27!NFKB2;;chr10:104154246..104154347,+!p3@NFKB2!2.02!595.65!NFKB2;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1453.54!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!2.01!121.24!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!2.01!101.47!SP140;;chr3:39195075..39195088,-!p1@CSRNP1!2.00!587.74!CSRNP1;;chr11:47399996..47400014,-!p4@SPI1!1.99!96.20!SPI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.96!525.80!CSRNP1;;chr19:45250948..45250998,+!p3@BCL3!1.96!217.44!BCL3;;chr10:35484090..35484104,+!p6@CREM!1.96!90.93!CREM;;chr3:101568349..101568365,+!p1@NFKBIZ!1.94!4132.63!NFKBIZ;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.66!PLEK;;chr14:75745523..75745537,+!p1@FOS!1.92!9247.03!FOS;;chr7:50344289..50344323,+!p1@IKZF1!1.92!81.70!IKZF1;;chr17:38498594..38498661,+!p2@RARA!1.91!255.65!RARA;;chr12:72056800..72056834,+!p1@THAP2!1.90!104.11!THAP2;;chr9:102584241..102584261,+!p4@NR4A3!1.89!117.28!NR4A3;;chr7:28725715..28725727,+!p3@CREB5!1.88!88.29!CREB5;;chr1:151030536..151030549,+!p8@MLLT11!1.88!75.11!MLLT11;;chr11:47400045..47400060,-!p6@SPI1!1.87!72.48!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.86!357.12!MEF2D;;chr4:83822199..83822239,+!p2@THAP9!1.86!84.34!THAP9;;chr5:131826457..131826514,-!p1@IRF1!1.85!2552.59!IRF1;;chr19:45971246..45971265,+!p1@FOSB!1.85!1211.06!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.85!80.39!RARA;;chr2:70142189..70142223,+!p2@MXD1!1.82!440.15!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.82!89.61!NFKBIA;;chr14:35872453..35872485,-!p2@NFKBIA!1.81!151.55!NFKBIA;;chr19:12902289..12902307,+!p1@JUNB!1.79!13080.52!JUNB;;chr4:83822246..83822277,+!p5@THAP9!1.79!60.62!THAP9;;chr9:102584128..102584144,+!p3@NR4A3!1.78!109.38!NR4A3;;chr2:231084639..231084654,-!p2@SP110!1.78!96.20!SP110;;chr2:97202480..97202499,+!p1@ARID5A!1.77!548.21!ARID5A;;chr4:106068026..106068084,+!p1@TET2!1.77!492.86!TET2;;chr2:61108808..61108821,+!p3@REL!1.77!72.48!REL;;chr1:37940170..37940190,+!p1@ZC3H12A!1.76!657.58!ZC3H12A;;chr8:123793988..123794016,+!p1@ZHX2!1.76!97.52!ZHX2;;chr10:35416142..35416169,+!p3@CREM!1.75!142.32!CREM;;chr20:56195474..56195506,-!p1@ZBP1!1.75!55.35!ZBP1;;chr2:61108695..61108753,+!p1@REL!1.74!350.54!REL;;chr2:231090433..231090469,+!p1@SP140!1.74!54.03!SP140;;chr17:38498402..38498445,+!p3@RARA!1.73!183.17!RARA;;chr2:208031943..208031978,-!p5@KLF7!1.71!65.89!KLF7;;chr2:208394817..208394834,+!p3@CREB1!1.69!187.13!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!1.68!349.22!ZCCHC6;;chr7:149470641..149470694,-!p1@ZNF467!1.68!202.94!ZNF467;;chr19:47616992..47617011,-!p4@ZC3H4!1.67!94.88!ZC3H4;;chr17:40429090..40429125,-!p3@STAT5B!1.67!46.12!STAT5B;;chr10:51572408..51572454,+!p3@NCOA4!1.66!246.43!NCOA4;;chr2:208031542..208031595,-!p2@KLF7!1.65!295.19!KLF7;;chr4:83822343..83822355,+!p9@THAP9!1.65!43.49!THAP9;;chr4:140098339..140098392,-!p1@ELF2!1.64!333.40!ELF2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.64!59.30!NFKBIZ;;chr19:16435625..16435682,+!p1@KLF2!1.63!1251.91!KLF2;;chr7:28725740..28725778,+!p1@CREB5!1.63!351.85!CREB5;;chr3:187463179..187463201,-!p2@BCL6!1.63!163.41!BCL6;;chr7:64126535..64126559,+!p2@ZNF107!1.63!86.98!ZNF107;;chr6:106534192..106534224,+!p1@PRDM1!1.62!110.70!PRDM1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!100.15!PRDM1;;chr1:156470494..156470505,-!p3@MEF2D!1.62!57.98!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.71!THAP2;;chr7:99680193..99680204,-!p2@ZNF3!1.62!40.85!ZNF3;;chr2:61108771..61108789,+!p4@REL!1.60!57.98!REL;;chr3:39195139..39195150,-!p3@CSRNP1!1.60!48.76!CSRNP1;;chr19:45251943..45252006,+!p1@BCL3!1.59!939.59!BCL3;;chr6:12012170..12012245,+!p1@HIVEP1!1.59!183.17!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.58!36.90!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.57!321.54!ZCCHC6;;chr7:106809470..106809481,+!p2@HBP1!1.57!50.08!HBP1;;chr4:38665769..38665801,+!p2@KLF3!1.55!300.46!KLF3;;chr12:57914286..57914304,-!p1@DDIT3!1.54!1164.94!DDIT3;;chrX:129244454..129244488,-!p1@ELF4!1.53!229.30!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.53!185.81!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.53!86.98!AKNA;;chr20:48807171..48807234,+!p4@CEBPB!1.53!71.16!CEBPB;;chr14:75746340..75746368,+!p3@FOS!1.53!32.95!FOS;;chr19:21688458..21688467,+!p3@ZNF429!1.53!32.95!ZNF429;;chr9:137217986..137218049,+!p3@RXRA!1.52!89.61!RXRA;;chr20:48807351..48807384,+!p1@CEBPB!1.51!3027.00!CEBPB;;chr1:25256756..25256774,-!p1@RUNX3!1.51!57.98!RUNX3;;chr1:8484007..8484061,-!p13@RERE!1.51!39.53!RERE;;chr4:103422499..103422632,+!p1@NFKB1!1.49!598.28!NFKB1;;chr12:48298785..48298828,-!p1@VDR!1.49!151.55!VDR;;chr2:70314240..70314256,+!p4@PCBP1!1.48!59.30!PCBP1;;chr5:176735063..176735088,-!p2@MXD3!1.48!28.99!MXD3;;chr9:32550965..32551031,-!p4@TOPORS!1.47!43.49!TOPORS;;chr2:28615716..28615733,+!p1@FOSL2!1.46!1246.64!FOSL2;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.00!ELF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.46!102.79!TSC22D3;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.11!JARID2;;chr7:44924939..44924993,-!p2@PURB!1.46!52.71!PURB;;chrX:129244430..129244442,-!p5@ELF4!1.46!27.67!ELF4;;chr19:36389839..36389857,-!p4@NFKBID!1.46!27.67!NFKBID;;chr6:143266297..143266356,-!p1@HIVEP2!1.45!126.51!HIVEP2;;chr1:247095162..247095173,-!p3@AHCTF1!1.45!40.85!AHCTF1;;chr9:127533519..127533573,-!p2@NR6A1!1.44!31.63!NR6A1;;chr6:44355499..44355514,+!p3@CDC5L!1.44!28.99!CDC5L;;chr9:102584278..102584285,+!p5@NR4A3!1.44!26.36!NR4A3;;chr19:45257891..45257908,+!p17@BCL3!1.44!26.36!BCL3;;chr11:47399920..47399931,-!p7@SPI1!1.44!26.36!SPI1;;chr16:3313791..3313834,+!p2@ZNF263!1.43!56.67!ZNF263;;chr7:50343634..50343717,+!p2@IKZF1!1.42!25.04!IKZF1;;chr22:38597987..38598021,+!p2@MAFF!1.41!146.28!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.41!27.67!THAP2;;chr2:231084659..231084721,-!p1@SP110!1.40!544.25!SP110;;chr3:170075436..170075520,+!p1@SKIL!1.39!491.54!SKIL;;chr21:30671690..30671762,+!p2@BACH1!1.39!79.07!BACH1;;chr3:150126904..150126958,+!p7@TSC22D2!1.39!40.85!TSC22D2;;chr3:18466660..18466676,-!p5@SATB1!1.39!27.67!SATB1;;chr2:157198916..157198978,-!p2@NR4A2!1.38!79.07!NR4A2;;chr6:15249128..15249177,+!p4@JARID2!1.38!40.85!JARID2;;chr8:71316021..71316068,-!p1@NCOA2!1.37!201.62!NCOA2;;chr9:94186085..94186096,-!p3@NFIL3!1.37!36.90!NFIL3;;chr5:172483414..172483425,+!p3@C5orf41!1.37!22.40!CREBRF;;chr1:154975110..154975149,+!p2@ZBTB7B!1.36!46.12!ZBTB7B;;chr11:13299319..13299424,+!p1@ARNTL!1.35!206.90!ARNTL;;chr9:102584159..102584174,+!p2@NR4A3!1.35!38.22!NR4A3;;chr6:15246261..15246312,+!p1@JARID2!1.34!483.63!JARID2;;chr21:30671235..30671253,+!p1@BACH1!1.34!255.65!BACH1;;chr14:62162258..62162269,+!p2@HIF1A!1.34!196.35!HIF1A;;chr5:172483347..172483407,+!p1@C5orf41!1.34!152.87!CREBRF;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.15!ETV6;;chr14:64971288..64971316,-!p2@ZBTB25!1.34!63.25!ZBTB25;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.63!MXD1;;chrY:2803415..2803468,+!p1@ZFY!1.34!21.08!ZFY;;chr17:38497715..38497734,+!p8@RARA!1.34!21.08!RARA;;chr4:83821967..83821998,+!p3@THAP9!1.33!25.04!THAP9;;chr14:62162285..62162296,+!p3@HIF1A!1.32!100.15!HIF1A;;chr21:47063625..47063658,+!p1@PCBP3!1.32!84.34!PCBP3;;chr14:69262789..69262822,-!p2@ZFP36L1!1.32!51.39!ZFP36L1;;chr14:35872494..35872511,-!p5@NFKBIA!1.32!26.36!NFKBIA;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.77!IKZF1;;chr3:113415441..113415500,-!p1@KIAA2018!1.31!102.79!KIAA2018;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.31!31.63!PCBP2;;chr20:48807430..48807439,+!p8@CEBPB!1.31!28.99!CEBPB;;chr3:5020939..5020952,+!p2@BHLHE40!1.30!57.98!BHLHE40;;chr12:48298765..48298783,-!p2@VDR!1.30!39.53!VDR;;chr14:69261310..69261326,-!p5@ZFP36L1!1.30!25.04!ZFP36L1;;chrX:106960285..106960299,-!p1@TSC22D3!1.29!486.27!TSC22D3;;chr1:247095194..247095235,-!p1@AHCTF1!1.29!189.76!AHCTF1;;chr14:58765217..58765301,+!p1@ARID4A!1.29!163.41!ARID4A;;chr19:12075844..12075880,+!p3@ZNF763!1.29!31.63!ZNF763;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.40!NFE2;;chr12:57917037..57917052,+!p9@MBD6!1.29!18.45!MBD6;;chr14:75988831..75988847,+!p2@BATF!1.29!18.45!BATF;;chr2:61108878..61108891,+!p5@REL!1.29!18.45!REL;;chr8:123794038..123794056,+!p5@ZHX2!1.29!18.45!ZHX2;;chr17:40440481..40440550,+!p1@STAT5A!1.28!127.83!STAT5A;;chr1:153895251..153895342,-!p2@GATAD2B!1.28!65.89!GATAD2B;;chr4:185395191..185395226,-!p4@IRF2!1.28!25.04!IRF2;;chr10:31288398..31288455,-!p2@ZNF438!1.28!21.08!ZNF438;;chr14:62162224..62162254,+!p1@HIF1A!1.27!2478.79!HIF1A;;chr2:174828545..174828644,-!p1@SP3!1.27!262.24!SP3;;chr20:48807875..48807982,+!p2@CEBPB!1.26!368.99!CEBPB;;chr2:145277640..145277771,-!p1@ZEB2!1.26!225.34!ZEB2;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.53!ETS2;;chr21:30671189..30671207,+!p4@BACH1!1.26!59.30!BACH1;;chr20:48807456..48807475,+!p3@CEBPB!1.26!32.95!CEBPB;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.13!NFE2;;chr6:15246741..15246765,+!p9@JARID2!1.26!17.13!JARID2;;chr16:88636875..88636886,+!p3@ZC3H18!1.25!23.72!ZC3H18;;chr4:185395633..185395651,-!p2@IRF2!1.24!26.36!IRF2;;chr2:43453734..43453751,-!p1@ZFP36L2!1.23!1649.89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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000771;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Eosinophils%252c%2520donor2.CNhs12548.12245-129H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12245-129H4 | |||
|is_a=EFO:0002091;;FF:0000249 | |||
|is_obsolete= | |||
|library_id=CNhs12548 | |||
|library_id_phase_based=2:CNhs12548 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12245 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12245 | |||
|name=Eosinophils, donor2 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12548,LSID920,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.182538370346326,0,0,0,0.365076740692652,0.204758710606266,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.365076740692652,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0.182538370346326,-0.132956589778862,0,0,0,0,0,0.182538370346326,0,0,0,0.365076740692652,0,0,-0.145899716966013,0,0,0,0,0,0,0.365076740692652,0,0.158323349233492,0,0,0,0,0,-0.0839305477320758,0,-0.0969923612426051,0,0.365076740692652,-0.097343627213097,0,0,0,0,0,0,0.365076740692652,0,0,0,1.60782080492138,0,0,1.15161625068657,0,0,0,0,0,0,0,0,0,0,-0.322967658463103,0,0,0,-0.364735921879743,-0.211197402695869,0,0,0.72874328971541,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0.965574963446125,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.188033982012095,-0.461312203448224,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0.365076740692652,0,0,0,0,0,0,-0.247178875285564,0,0.983400360678816,-0.143515142523472,0.182538370346326,0.365076740692652,-0.244740716563245,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,0.389432266887762,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,0.676472323978508,-0.0827201683234173,0,-0.83915900117071,0.741639310991067,0,0,0.280288546027638,-0.409087049327129,-1.01837891339289,0,0,0.243296888940778,0.00118875178566674,0,0,-0.391044581551635,0,0.160925293535075,-0.188428308485383,0,-0.36577122580328,0,0,0,0,0,0,0,0,0,0,0,0.12504490352489,0.0380881440136828,0.0198398299804242,0,0,-0.0623597702502854,-0.198097552984074,0,0,-0.373286155956567,-0.350736013296859,0,-0.229290682860631,0,1.24492840363918,-0.0263202393005806,0.197724546291563,-0.512996568044048,-0.147401849371139,-0.189981719549847,0,-0.984021689225405,-0.786272629114012,-0.0313667331305562,0.339555089161182,-0.442601113491919,-1.2314085082871,0,0,0,0,0.523759260012985,0,0.00894619199467805,-0.490114714476774,0.445698780571793,-0.67098743647571,0.466725551513334,-0.270939671279591,0.227406806369445,-0.0395325284566706,-0.092359712203943,-0.15877865329601,-0.4215723249037,0,0.694904497786169,0,-0.0078108706169626,-0.225335015052046,1.50297608791535,0,1.20123519239583,-0.0683442610773682,0,0.285436350764265,-0.0264130012326904,0,0,0.4308703371136,0,0,0,0,0,-0.351246217666641,0.853564670799309,0.957359727795327,0,-0.08401302372049,-0.193879736255476,0.476372984971958,0,0.593109247075224,-0.202170761610805,0.262502939693984,-0.292633804596236,0,-0.061606696558899,-0.00175737116194419,-0.164990696339003,-0.422394805391737,-0.0584468268118252,1.07743229306781,0.40086833970409,-0.364735921879743,-0.22836277273495,-0.275752932992257,-0.0881268324752877,0,-0.322967658463103,1.58261340186489,0,-0.400991533883246,0,-0.169301367814866,0,0.338466019557648,0,0.683286031983154,-0.175357010780588,0.12128771747459,0.611452395367387,0,-0.284012586036779,-0.788130937773974,0,-0.029276195241853,0,0,-0.150367083334639,-0.697695966512583,0.369563846367861,0.141299089348444,0,-0.790080158389657,0,0,-0.125723183963034,0.129600702928263,0,-0.206138165764953,-0.609202914213396,-0.604216041195295,0.249105667257718,0,0,-0.645700337992725,0,0,-0.60592806381803,0,-0.254706583265982,0.111750399205896,0,-0.108622809454255,0,0,-0.177527765965176,0.365076740692652,0.180741376023402,0,0.560577092055277,-0.249881296598824,-0.116628112990133,0,0.347452248893085,0,0,0,0,0,0,0,0,0,-0.439625538186487,-0.354833330216448,0.365076740692652,0.310048140426318,0,0,0,0,0,0.378793625132411,0,0,-1.59233083881968,-0.378396473363799,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0.365076740692652,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.759829782720149,0,0,-0.63193017338638,0,0.722586175812429,-0.0815818795468414,0,0.362073873288669,0.584278986056336,-0.749043248593185,0,0,0.748300436195124,0,0,-0.475367229577971,-0.0823702229656663,0,0,0,0,0.280288546027638,0,0.365076740692652,1.45748657943082,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.149598192253911,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.544455379499728,0,0,0,0,0,0,0,0,-0.10634919897059,0,0,0,0,0,-0.0969923612426051,0,0,0.365076740692652,0.365076740692652,-0.564807121153884,0,0.560577092055277,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.630353132919728,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.683467434063272,0,0,0,-0.104796384789156,0,0.204758710606266,0,0.365076740692652,0,0,0,0.365076740692652,0,0,0,0,0.365076740692652,0,0,0,0,0,0.365076740692652,0,0,0,0,-0.463062852840737,0.0779562802388675,0,0,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0.365076740692652,0,0,0.280288546027638,0,0,0,0,0,0,0,0,0.797351807772249,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.370794106573438,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.161868225904785,0,0,0,-0.054385572482455,0,0,-0.191142455090553,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.280288546027638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365076740692652,0,0,0.560577092055277,0,0,0,0,0.182538370346326,0,0,0.331065377417236,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,1.01257577544667,0.365076740692652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10924899145442,0,0,1.36926542658903,0,0,0.365076740692652,0,0.155148225104882,0,0,0,0,0,0,0,0,0,0.365076740692652,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.185427301823061,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.318028478722954,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.316646698466983,0,0.707806140684935,0.365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| |||
|rna_box=129 | |||
|rna_catalog_number=3H100-90-5 | |||
|rna_concentration=0.0891 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.17 | |||
|rna_od260/280=1.97 | |||
|rna_position=H4 | |||
|rna_rin=8 | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=129H4 | |||
|rna_weight_ug=1.0692 | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:753 | |||
|sample_cell_type=eosinophil | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=3HBiomedical | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.18769100826504e-301!GO:0043227;membrane-bound organelle;4.68518767154783e-102!GO:0043231;intracellular membrane-bound organelle;7.79980674740566e-102!GO:0005737;cytoplasm;2.29016924636461e-94!GO:0043226;organelle;3.07123048291953e-92!GO:0043229;intracellular organelle;1.13426705572026e-91!GO:0005515;protein binding;1.07285788572102e-70!GO:0044422;organelle part;1.04121405162571e-58!GO:0044446;intracellular organelle part;2.18048263572747e-57!GO:0043170;macromolecule metabolic process;1.46669425723081e-56!GO:0044237;cellular metabolic process;3.0997858203456e-56!GO:0044444;cytoplasmic part;2.69405595747243e-54!GO:0044238;primary metabolic process;6.47163938118599e-54!GO:0005634;nucleus;2.56142043581418e-51!GO:0032991;macromolecular complex;3.6560843299276e-47!GO:0044428;nuclear part;1.01819951673353e-46!GO:0003723;RNA binding;5.04193576495948e-42!GO:0033036;macromolecule localization;3.5136445886763e-40!GO:0015031;protein transport;1.99332586497476e-39!GO:0043283;biopolymer metabolic process;4.42802745505294e-39!GO:0045184;establishment of protein localization;1.5003452879935e-38!GO:0019538;protein metabolic process;6.20390201006912e-38!GO:0008104;protein localization;5.76061381225243e-37!GO:0044260;cellular macromolecule metabolic process;1.87924974874106e-36!GO:0044267;cellular protein metabolic process;4.03664496126238e-36!GO:0043233;organelle lumen;6.2964742525278e-34!GO:0031974;membrane-enclosed lumen;6.2964742525278e-34!GO:0031981;nuclear lumen;2.39722544261792e-32!GO:0016071;mRNA metabolic process;4.7240986722484e-31!GO:0030529;ribonucleoprotein complex;7.78767151470867e-29!GO:0043234;protein complex;6.76524222957258e-28!GO:0012501;programmed cell death;7.54971180310577e-28!GO:0006915;apoptosis;7.54971180310577e-28!GO:0010467;gene expression;1.29237575569696e-27!GO:0008219;cell death;1.07587026643376e-26!GO:0016265;death;1.07587026643376e-26!GO:0006397;mRNA processing;1.69925117780731e-26!GO:0005829;cytosol;4.27049108194306e-26!GO:0016043;cellular component organization and biogenesis;4.91276815592756e-26!GO:0008380;RNA splicing;2.27660020460829e-25!GO:0005654;nucleoplasm;3.36157534350749e-25!GO:0006396;RNA processing;3.65406727911639e-25!GO:0046907;intracellular transport;4.03598317776944e-24!GO:0031090;organelle membrane;1.26480351309288e-23!GO:0006886;intracellular protein transport;2.32130791235433e-23!GO:0006512;ubiquitin cycle;3.20788609931891e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.78353943318221e-23!GO:0043412;biopolymer modification;9.91317211458313e-22!GO:0043687;post-translational protein modification;1.13233708797049e-21!GO:0044451;nucleoplasm part;1.2282102519241e-21!GO:0006464;protein modification process;1.04028348396466e-20!GO:0006412;translation;2.51853984136407e-20!GO:0008134;transcription factor binding;7.56284265386202e-20!GO:0051641;cellular localization;1.27950776541181e-19!GO:0051649;establishment of cellular localization;1.90933607213395e-19!GO:0042981;regulation of apoptosis;3.57501235943359e-18!GO:0000166;nucleotide binding;4.88022376843234e-18!GO:0005681;spliceosome;6.12348016486203e-18!GO:0043067;regulation of programmed cell death;6.45473184949228e-18!GO:0007242;intracellular signaling cascade;1.16447780989712e-17!GO:0044265;cellular macromolecule catabolic process;1.62298160890054e-17!GO:0007243;protein kinase cascade;7.08457635494351e-17!GO:0016604;nuclear body;7.29327386761056e-17!GO:0065003;macromolecular complex assembly;1.05961381431046e-16!GO:0016462;pyrophosphatase activity;1.24180168439692e-15!GO:0017111;nucleoside-triphosphatase activity;1.35753237863731e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.16968444955149e-15!GO:0016192;vesicle-mediated transport;2.46201010392352e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.54467522685615e-15!GO:0016607;nuclear speck;2.62942152100951e-15!GO:0006793;phosphorus metabolic process;3.10177098065394e-15!GO:0006796;phosphate metabolic process;3.10177098065394e-15!GO:0019941;modification-dependent protein catabolic process;3.34413297263013e-15!GO:0043632;modification-dependent macromolecule catabolic process;3.34413297263013e-15!GO:0016070;RNA metabolic process;3.40623633914376e-15!GO:0009059;macromolecule biosynthetic process;3.42279847262612e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.89851565057261e-15!GO:0050794;regulation of cellular process;4.39140334004662e-15!GO:0006511;ubiquitin-dependent protein catabolic process;6.31609943314888e-15!GO:0044257;cellular protein catabolic process;7.28192198914059e-15!GO:0031967;organelle envelope;7.98912919970851e-15!GO:0031975;envelope;1.16760140341398e-14!GO:0048523;negative regulation of cellular process;3.37524341783441e-14!GO:0002376;immune system process;3.62630034157816e-14!GO:0022607;cellular component assembly;3.83294259459725e-14!GO:0032553;ribonucleotide binding;4.05061100448625e-14!GO:0032555;purine ribonucleotide binding;4.05061100448625e-14!GO:0043285;biopolymer catabolic process;5.98298116427126e-14!GO:0006996;organelle organization and biogenesis;7.14497823155808e-14!GO:0006913;nucleocytoplasmic transport;8.52409249055279e-14!GO:0016310;phosphorylation;1.08125102375378e-13!GO:0051169;nuclear transport;1.7814859599154e-13!GO:0003676;nucleic acid binding;1.82221676931966e-13!GO:0009058;biosynthetic process;2.2127062446667e-13!GO:0005794;Golgi apparatus;4.94209895708185e-13!GO:0017076;purine nucleotide binding;5.01466981216007e-13!GO:0009057;macromolecule catabolic process;5.53881661084655e-13!GO:0044249;cellular biosynthetic process;6.01474348273421e-13!GO:0003712;transcription cofactor activity;6.52192532258091e-13!GO:0048519;negative regulation of biological process;9.65977107513251e-13!GO:0050789;regulation of biological process;1.47713786621876e-12!GO:0065009;regulation of a molecular function;1.49703839448617e-12!GO:0006259;DNA metabolic process;2.57643536508634e-12!GO:0005524;ATP binding;3.51893646531611e-12!GO:0006605;protein targeting;3.52384549523467e-12!GO:0043069;negative regulation of programmed cell death;5.95344308251057e-12!GO:0043066;negative regulation of apoptosis;6.01196383993488e-12!GO:0016874;ligase activity;6.82278758989232e-12!GO:0044248;cellular catabolic process;7.16844328284057e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.37770698830932e-12!GO:0044445;cytosolic part;7.37770698830932e-12!GO:0032559;adenyl ribonucleotide binding;1.04766783166638e-11!GO:0008639;small protein conjugating enzyme activity;1.2521269662226e-11!GO:0006366;transcription from RNA polymerase II promoter;1.27254285893654e-11!GO:0005739;mitochondrion;1.70414233002006e-11!GO:0012505;endomembrane system;2.08054129925584e-11!GO:0005768;endosome;2.11968711569105e-11!GO:0004842;ubiquitin-protein ligase activity;2.24748585674595e-11!GO:0016887;ATPase activity;2.30260807326677e-11!GO:0065007;biological regulation;3.66918286654744e-11!GO:0030163;protein catabolic process;4.53394510359826e-11!GO:0019787;small conjugating protein ligase activity;4.53394510359826e-11!GO:0022618;protein-RNA complex assembly;5.70800390502102e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.2767074529249e-11!GO:0005840;ribosome;7.39678103604694e-11!GO:0006955;immune response;9.07459636548119e-11!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.04369977834841e-10!GO:0033279;ribosomal subunit;1.17398888807998e-10!GO:0042623;ATPase activity, coupled;1.31711215585685e-10!GO:0006119;oxidative phosphorylation;1.59003656851327e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.59100352665435e-10!GO:0030554;adenyl nucleotide binding;1.61160430163339e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.74045330838207e-10!GO:0003735;structural constituent of ribosome;5.40177061141022e-10!GO:0016568;chromatin modification;1.05543782327596e-09!GO:0019222;regulation of metabolic process;1.10404316767674e-09!GO:0006323;DNA packaging;1.44937633619254e-09!GO:0006916;anti-apoptosis;1.49192836322046e-09!GO:0006950;response to stress;1.68628364723292e-09!GO:0051246;regulation of protein metabolic process;2.19459278259837e-09!GO:0050790;regulation of catalytic activity;3.13694138752741e-09!GO:0003713;transcription coactivator activity;4.14129107132808e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.33924386284853e-09!GO:0008135;translation factor activity, nucleic acid binding;5.34000284841468e-09!GO:0005773;vacuole;5.57143346483805e-09!GO:0044429;mitochondrial part;5.71165114282291e-09!GO:0048770;pigment granule;8.26462937438002e-09!GO:0042470;melanosome;8.26462937438002e-09!GO:0004674;protein serine/threonine kinase activity;9.77215132700016e-09!GO:0005635;nuclear envelope;1.13538748027344e-08!GO:0016881;acid-amino acid ligase activity;1.37829922109094e-08!GO:0048193;Golgi vesicle transport;1.70975275500547e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97496176665832e-08!GO:0016787;hydrolase activity;3.63223452742676e-08!GO:0031324;negative regulation of cellular metabolic process;3.65021390677637e-08!GO:0003743;translation initiation factor activity;4.05283088122921e-08!GO:0006457;protein folding;4.24616107514423e-08!GO:0048522;positive regulation of cellular process;4.41937093327624e-08!GO:0000502;proteasome complex (sensu Eukaryota);4.52176455326831e-08!GO:0017038;protein import;4.60253380191569e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.09134543519808e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.09150695682372e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;6.09150695682372e-08!GO:0000375;RNA splicing, via transesterification reactions;6.09150695682372e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.09150695682372e-08!GO:0019899;enzyme binding;6.17999774069308e-08!GO:0048518;positive regulation of biological process;7.31553469373509e-08!GO:0051170;nuclear import;8.44893046244334e-08!GO:0019829;cation-transporting ATPase activity;1.04851679276608e-07!GO:0006606;protein import into nucleus;1.04851679276608e-07!GO:0004386;helicase activity;1.11185654440755e-07!GO:0009615;response to virus;1.19624707710525e-07!GO:0043065;positive regulation of apoptosis;1.23907075359893e-07!GO:0008026;ATP-dependent helicase activity;1.50871699930788e-07!GO:0051726;regulation of cell cycle;1.58748341528391e-07!GO:0043068;positive regulation of programmed cell death;1.58748341528391e-07!GO:0006413;translational initiation;2.10467356608296e-07!GO:0005740;mitochondrial envelope;2.25563087972382e-07!GO:0051276;chromosome organization and biogenesis;2.38758927369548e-07!GO:0007049;cell cycle;2.40551043291567e-07!GO:0031965;nuclear membrane;2.46392685905751e-07!GO:0005770;late endosome;2.59185514465217e-07!GO:0044453;nuclear membrane part;2.78847228844542e-07!GO:0000074;regulation of progression through cell cycle;3.01330571778612e-07!GO:0019866;organelle inner membrane;3.40156442586201e-07!GO:0031323;regulation of cellular metabolic process;3.72760649694939e-07!GO:0016773;phosphotransferase activity, alcohol group as acceptor;3.73084963124677e-07!GO:0007264;small GTPase mediated signal transduction;3.79026696332903e-07!GO:0006446;regulation of translational initiation;4.02924697236873e-07!GO:0009892;negative regulation of metabolic process;4.11785933400381e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.35715032447191e-07!GO:0006917;induction of apoptosis;4.35715032447191e-07!GO:0016563;transcription activator activity;5.33394543529264e-07!GO:0000323;lytic vacuole;5.41131802204702e-07!GO:0005764;lysosome;5.41131802204702e-07!GO:0032446;protein modification by small protein conjugation;5.8380575016011e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.48362444421554e-07!GO:0012502;induction of programmed cell death;6.52720707009263e-07!GO:0009607;response to biotic stimulus;6.55691543840769e-07!GO:0031966;mitochondrial membrane;6.80916845741927e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.79764468479026e-07!GO:0050657;nucleic acid transport;9.59222078552543e-07!GO:0051236;establishment of RNA localization;9.59222078552543e-07!GO:0050658;RNA transport;9.59222078552543e-07!GO:0060090;molecular adaptor activity;1.00024179344607e-06!GO:0006403;RNA localization;1.18813997126954e-06!GO:0016481;negative regulation of transcription;1.20012991027653e-06!GO:0005730;nucleolus;1.22064222786543e-06!GO:0009056;catabolic process;1.30442830746724e-06!GO:0016564;transcription repressor activity;1.53022504150549e-06!GO:0045786;negative regulation of progression through cell cycle;1.54502011760965e-06!GO:0015935;small ribosomal subunit;1.67113574421072e-06!GO:0015986;ATP synthesis coupled proton transport;1.83993106083413e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.83993106083413e-06!GO:0048468;cell development;1.93089156930374e-06!GO:0016567;protein ubiquitination;2.04001665891194e-06!GO:0009967;positive regulation of signal transduction;2.30996397121806e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.54431995515643e-06!GO:0006417;regulation of translation;2.5568036496594e-06!GO:0016301;kinase activity;2.62583536055286e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.69503344009283e-06!GO:0009966;regulation of signal transduction;3.18711944395279e-06!GO:0051082;unfolded protein binding;3.70577738286949e-06!GO:0005774;vacuolar membrane;3.80802841473297e-06!GO:0009889;regulation of biosynthetic process;4.3156562334608e-06!GO:0051186;cofactor metabolic process;5.09696230916164e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.43245952446373e-06!GO:0044455;mitochondrial membrane part;5.6894094409822e-06!GO:0005783;endoplasmic reticulum;5.6894094409822e-06!GO:0006754;ATP biosynthetic process;6.08136886312075e-06!GO:0006753;nucleoside phosphate metabolic process;6.08136886312075e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.19295933699897e-06!GO:0005643;nuclear pore;6.23478738577541e-06!GO:0044440;endosomal part;6.23478738577541e-06!GO:0010008;endosome membrane;6.23478738577541e-06!GO:0031326;regulation of cellular biosynthetic process;6.90511517121531e-06!GO:0010468;regulation of gene expression;7.68304642643682e-06!GO:0008565;protein transporter activity;9.42484198381108e-06!GO:0044437;vacuolar part;1.03191583593205e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.06068486598221e-05!GO:0016197;endosome transport;1.16369171240958e-05!GO:0009259;ribonucleotide metabolic process;1.36117484635013e-05!GO:0044431;Golgi apparatus part;1.47199534134832e-05!GO:0051168;nuclear export;1.49519423490745e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.67914171302538e-05!GO:0051028;mRNA transport;1.76952742817253e-05!GO:0009150;purine ribonucleotide metabolic process;1.78195756351211e-05!GO:0006468;protein amino acid phosphorylation;1.85213372280104e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.88088760717709e-05!GO:0015399;primary active transmembrane transporter activity;1.88088760717709e-05!GO:0005743;mitochondrial inner membrane;2.20761166797923e-05!GO:0043566;structure-specific DNA binding;2.23862556556545e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.27073636708251e-05!GO:0008047;enzyme activator activity;2.29716313889047e-05!GO:0006732;coenzyme metabolic process;2.31512057546286e-05!GO:0000151;ubiquitin ligase complex;2.36321819643828e-05!GO:0005746;mitochondrial respiratory chain;2.36321819643828e-05!GO:0009260;ribonucleotide biosynthetic process;2.5690243695414e-05!GO:0005769;early endosome;2.87155027291796e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.87330224489647e-05!GO:0016740;transferase activity;2.99871925976208e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;3.1429399626475e-05!GO:0005070;SH3/SH2 adaptor activity;3.51074626086225e-05!GO:0048475;coated membrane;3.53512732261701e-05!GO:0030117;membrane coat;3.53512732261701e-05!GO:0046034;ATP metabolic process;3.61387973496014e-05!GO:0030120;vesicle coat;3.82182401427811e-05!GO:0030662;coated vesicle membrane;3.82182401427811e-05!GO:0043228;non-membrane-bound organelle;3.95472734118188e-05!GO:0043232;intracellular non-membrane-bound organelle;3.95472734118188e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.98067910096116e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.98067910096116e-05!GO:0065004;protein-DNA complex assembly;4.02349468577835e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;4.04381313174291e-05!GO:0006350;transcription;4.24126046608256e-05!GO:0005765;lysosomal membrane;4.26399960790665e-05!GO:0009142;nucleoside triphosphate biosynthetic process;4.49209928597443e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.49209928597443e-05!GO:0006164;purine nucleotide biosynthetic process;4.86486550465231e-05!GO:0003714;transcription corepressor activity;4.97325677491477e-05!GO:0046930;pore complex;4.99770030088961e-05!GO:0005057;receptor signaling protein activity;5.18132770430456e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.81575246787301e-05!GO:0003724;RNA helicase activity;5.82336485272952e-05!GO:0015934;large ribosomal subunit;5.871353497503e-05!GO:0005793;ER-Golgi intermediate compartment;6.39569304737343e-05!GO:0008632;apoptotic program;6.39569304737343e-05!GO:0006401;RNA catabolic process;6.54734987436682e-05!GO:0006163;purine nucleotide metabolic process;6.67254523582002e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.08737616702803e-05!GO:0051338;regulation of transferase activity;7.09531188567394e-05!GO:0006333;chromatin assembly or disassembly;7.48827027682539e-05!GO:0045859;regulation of protein kinase activity;7.71892131086963e-05!GO:0043549;regulation of kinase activity;8.3402102499646e-05!GO:0002764;immune response-regulating signal transduction;9.28220260769479e-05!GO:0051336;regulation of hydrolase activity;9.70751577686397e-05!GO:0006974;response to DNA damage stimulus;0.000101275408443576!GO:0006402;mRNA catabolic process;0.000107123419707054!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000113018467957914!GO:0009144;purine nucleoside triphosphate metabolic process;0.000113018467957914!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00011550472085459!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00011550472085459!GO:0002757;immune response-activating signal transduction;0.000120931222984254!GO:0016044;membrane organization and biogenesis;0.000121492951858229!GO:0009199;ribonucleoside triphosphate metabolic process;0.000122113513538498!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000123526198331959!GO:0007265;Ras protein signal transduction;0.000142144072341921!GO:0003924;GTPase activity;0.000142144072341921!GO:0030695;GTPase regulator activity;0.000148507249426036!GO:0050136;NADH dehydrogenase (quinone) activity;0.000156338718982171!GO:0003954;NADH dehydrogenase activity;0.000156338718982171!GO:0008137;NADH dehydrogenase (ubiquinone) activity;0.000156338718982171!GO:0005839;proteasome core complex (sensu Eukaryota);0.000161947422080765!GO:0051707;response to other organism;0.000186798195801607!GO:0022402;cell cycle process;0.00019516356477818!GO:0006752;group transfer coenzyme metabolic process;0.000197296892481899!GO:0003697;single-stranded DNA binding;0.000204821117068929!GO:0009893;positive regulation of metabolic process;0.000209294067075633!GO:0009141;nucleoside triphosphate metabolic process;0.00021903660594878!GO:0006952;defense response;0.000238179195903993!GO:0006954;inflammatory response;0.000257653949676503!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.000267730758215846!GO:0045893;positive regulation of transcription, DNA-dependent;0.000295541918115149!GO:0004672;protein kinase activity;0.000299607860481744!GO:0042775;organelle ATP synthesis coupled electron transport;0.00030499808215472!GO:0042773;ATP synthesis coupled electron transport;0.00030499808215472!GO:0005885;Arp2/3 protein complex;0.000309828290765486!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000317434417962516!GO:0043085;positive regulation of catalytic activity;0.000317739565274907!GO:0044432;endoplasmic reticulum part;0.000319453992603635!GO:0045321;leukocyte activation;0.000333890927493253!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00034529787321116!GO:0022890;inorganic cation transmembrane transporter activity;0.000374029762580204!GO:0000139;Golgi membrane;0.000396593505370822!GO:0004298;threonine endopeptidase activity;0.000408521899613036!GO:0031902;late endosome membrane;0.000410801140984575!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000433037374385197!GO:0006461;protein complex assembly;0.000442142911981189!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;0.000469412277550391!GO:0046822;regulation of nucleocytoplasmic transport;0.000469412277550391!GO:0005525;GTP binding;0.000497100814795588!GO:0008186;RNA-dependent ATPase activity;0.000503495552605466!GO:0003729;mRNA binding;0.000512499645814831!GO:0030964;NADH dehydrogenase complex (quinone);0.000512499645814831!GO:0045271;respiratory chain complex I;0.000512499645814831!GO:0005747;mitochondrial respiratory chain complex I;0.000512499645814831!GO:0016251;general RNA polymerase II transcription factor activity;0.000520428871939956!GO:0006818;hydrogen transport;0.000529022197254276!GO:0065002;intracellular protein transport across a membrane;0.000583951127368821!GO:0045941;positive regulation of transcription;0.000586447976455641!GO:0031982;vesicle;0.000621851491210827!GO:0045892;negative regulation of transcription, DNA-dependent;0.000656872621548758!GO:0006613;cotranslational protein targeting to membrane;0.000726749846563051!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;0.000773192376213894!GO:0045449;regulation of transcription;0.000827539715563234!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000871095259379699!GO:0015992;proton transport;0.000878384782062564!GO:0051789;response to protein stimulus;0.000883973065284688!GO:0006986;response to unfolded protein;0.000883973065284688!GO:0042802;identical protein binding;0.00089799423564456!GO:0008234;cysteine-type peptidase activity;0.00089799423564456!GO:0032940;secretion by cell;0.000924717116808102!GO:0051223;regulation of protein transport;0.00095596183266508!GO:0031901;early endosome membrane;0.000962874817513401!GO:0005798;Golgi-associated vesicle;0.000976095171940698!GO:0005789;endoplasmic reticulum membrane;0.00104172493605174!GO:0005083;small GTPase regulator activity;0.00105987561022321!GO:0030036;actin cytoskeleton organization and biogenesis;0.00111451025801228!GO:0006351;transcription, DNA-dependent;0.00113320258943643!GO:0005637;nuclear inner membrane;0.0011343932065354!GO:0006352;transcription initiation;0.00122428820806351!GO:0005667;transcription factor complex;0.00124841674258316!GO:0031252;leading edge;0.00127325058250303!GO:0044262;cellular carbohydrate metabolic process;0.0012896765424204!GO:0007050;cell cycle arrest;0.00131233044111263!GO:0004004;ATP-dependent RNA helicase activity;0.00132546474107441!GO:0032774;RNA biosynthetic process;0.00138340959412267!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00154464093297784!GO:0009108;coenzyme biosynthetic process;0.00158849240515737!GO:0000245;spliceosome assembly;0.0018152884917449!GO:0050851;antigen receptor-mediated signaling pathway;0.00182321646101318!GO:0000785;chromatin;0.00189399224012424!GO:0043281;regulation of caspase activity;0.00203554915159783!GO:0016363;nuclear matrix;0.00213342597719087!GO:0001775;cell activation;0.00213402109573417!GO:0046519;sphingoid metabolic process;0.00215426186788198!GO:0042110;T cell activation;0.00222605373337094!GO:0051188;cofactor biosynthetic process;0.00223480571499576!GO:0031325;positive regulation of cellular metabolic process;0.00223768986979801!GO:0031410;cytoplasmic vesicle;0.00230810495573987!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00236257377092135!GO:0006914;autophagy;0.00248132436588187!GO:0046983;protein dimerization activity;0.00254630592593532!GO:0006919;caspase activation;0.00257575938110135!GO:0030258;lipid modification;0.00258213746913228!GO:0030658;transport vesicle membrane;0.00261862660728846!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;0.0026680364639733!GO:0043280;positive regulation of caspase activity;0.00305418637455385!GO:0009719;response to endogenous stimulus;0.00318744536706198!GO:0006672;ceramide metabolic process;0.00320581469618169!GO:0033157;regulation of intracellular protein transport;0.00325341789896131!GO:0042306;regulation of protein import into nucleus;0.00325341789896131!GO:0006611;protein export from nucleus;0.00337746226539363!GO:0030133;transport vesicle;0.00350887769851021!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00351545377856284!GO:0051427;hormone receptor binding;0.00361890030907158!GO:0005694;chromosome;0.00363244489539232!GO:0006281;DNA repair;0.003913487810384!GO:0033367;protein localization in mast cell secretory granule;0.003913487810384!GO:0033365;protein localization in organelle;0.003913487810384!GO:0033371;T cell secretory granule organization and biogenesis;0.003913487810384!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.003913487810384!GO:0033375;protease localization in T cell secretory granule;0.003913487810384!GO:0042629;mast cell granule;0.003913487810384!GO:0033377;maintenance of protein localization in T cell secretory granule;0.003913487810384!GO:0033364;mast cell secretory granule organization and biogenesis;0.003913487810384!GO:0033380;granzyme B localization in T cell secretory granule;0.003913487810384!GO:0033379;maintenance of protease localization in T cell secretory granule;0.003913487810384!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.003913487810384!GO:0033368;protease localization in mast cell secretory granule;0.003913487810384!GO:0033366;protein localization in secretory granule;0.003913487810384!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.003913487810384!GO:0033374;protein localization in T cell secretory granule;0.003913487810384!GO:0035257;nuclear hormone receptor binding;0.00405446981525403!GO:0005813;centrosome;0.00406721805378726!GO:0051090;regulation of transcription factor activity;0.00409267746259469!GO:0032561;guanyl ribonucleotide binding;0.00415891763872159!GO:0019001;guanyl nucleotide binding;0.00415891763872159!GO:0009060;aerobic respiration;0.00420367335833309!GO:0006612;protein targeting to membrane;0.00431443503933496!GO:0046649;lymphocyte activation;0.00437882232622351!GO:0033673;negative regulation of kinase activity;0.00452853711532897!GO:0006469;negative regulation of protein kinase activity;0.00452853711532897!GO:0030097;hemopoiesis;0.00472986596518556!GO:0006897;endocytosis;0.00473278254771942!GO:0010324;membrane invagination;0.00473278254771942!GO:0000119;mediator complex;0.00540656554792163!GO:0051345;positive regulation of hydrolase activity;0.00540853722285902!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00541124930238765!GO:0030099;myeloid cell differentiation;0.00544894515377381!GO:0005096;GTPase activator activity;0.00555712337663284!GO:0030660;Golgi-associated vesicle membrane;0.00558240369389789!GO:0045045;secretory pathway;0.00566595257110432!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00566595257110432!GO:0006405;RNA export from nucleus;0.00568393147740698!GO:0000287;magnesium ion binding;0.00582861416402871!GO:0006643;membrane lipid metabolic process;0.00601128240975685!GO:0006355;regulation of transcription, DNA-dependent;0.00608579127816347!GO:0008637;apoptotic mitochondrial changes;0.00662743996940977!GO:0005815;microtubule organizing center;0.00680920469114462!GO:0005484;SNAP receptor activity;0.00683890750520054!GO:0031625;ubiquitin protein ligase binding;0.00683890750520054!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0068428054564794!GO:0030532;small nuclear ribonucleoprotein complex;0.00704235563493575!GO:0030518;steroid hormone receptor signaling pathway;0.00718702349367374!GO:0051251;positive regulation of lymphocyte activation;0.0073442558189764!GO:0009055;electron carrier activity;0.00742945837259888!GO:0005669;transcription factor TFIID complex;0.00761709728910379!GO:0045637;regulation of myeloid cell differentiation;0.00787278584962949!GO:0031988;membrane-bound vesicle;0.00790052746113619!GO:0042990;regulation of transcription factor import into nucleus;0.00810665801662152!GO:0042991;transcription factor import into nucleus;0.00810665801662152!GO:0002274;myeloid leukocyte activation;0.00830565144159588!GO:0003690;double-stranded DNA binding;0.00834682436977656!GO:0022415;viral reproductive process;0.00864177414910692!GO:0001776;leukocyte homeostasis;0.00866281247984577!GO:0017091;AU-rich element binding;0.00866281247984577!GO:0050779;RNA destabilization;0.00866281247984577!GO:0000289;poly(A) tail shortening;0.00866281247984577!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00900849024068859!GO:0051348;negative regulation of transferase activity;0.00912446396135497!GO:0043087;regulation of GTPase activity;0.00921725873331954!GO:0046966;thyroid hormone receptor binding;0.00924095295530887!GO:0045259;proton-transporting ATP synthase complex;0.00939184385309348!GO:0030029;actin filament-based process;0.00946469312063912!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00953636077882522!GO:0030127;COPII vesicle coat;0.00961553597459124!GO:0012507;ER to Golgi transport vesicle membrane;0.00961553597459124!GO:0007165;signal transduction;0.00971176928446277!GO:0001819;positive regulation of cytokine production;0.010350200546728!GO:0048872;homeostasis of number of cells;0.010659012566433!GO:0031980;mitochondrial lumen;0.0107678654994481!GO:0005759;mitochondrial matrix;0.0107678654994481!GO:0032640;tumor necrosis factor production;0.0111727648594991!GO:0007034;vacuolar transport;0.0112105585831652!GO:0016791;phosphoric monoester hydrolase activity;0.0112827298671588!GO:0008286;insulin receptor signaling pathway;0.0115578808639358!GO:0008383;manganese superoxide dismutase activity;0.0116184983638907!GO:0001315;age-dependent response to reactive oxygen species;0.0116184983638907!GO:0006607;NLS-bearing substrate import into nucleus;0.0116580743276439!GO:0002467;germinal center formation;0.0116787486588302!GO:0001816;cytokine production;0.0119202072039055!GO:0019783;small conjugating protein-specific protease activity;0.0119397872730236!GO:0045408;regulation of interleukin-6 biosynthetic process;0.0122350665632541!GO:0032635;interleukin-6 production;0.0122731747698018!GO:0007259;JAK-STAT cascade;0.0125793872916002!GO:0030134;ER to Golgi transport vesicle;0.0125989963567763!GO:0030384;phosphoinositide metabolic process;0.0131627907146377!GO:0004722;protein serine/threonine phosphatase activity;0.013314944387302!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0137878093121318!GO:0030149;sphingolipid catabolic process;0.0138024256080604!GO:0006984;ER-nuclear signaling pathway;0.0145087941195485!GO:0033116;ER-Golgi intermediate compartment membrane;0.014561225324715!GO:0006891;intra-Golgi vesicle-mediated transport;0.0147189164570014!GO:0048471;perinuclear region of cytoplasm;0.0153807412989224!GO:0030521;androgen receptor signaling pathway;0.0156775036333629!GO:0044427;chromosomal part;0.0157007456447817!GO:0001667;ameboidal cell migration;0.0158874407866432!GO:0032027;myosin light chain binding;0.0158874407866432!GO:0046854;phosphoinositide phosphorylation;0.0161235189842183!GO:0016023;cytoplasmic membrane-bound vesicle;0.01645029265475!GO:0050871;positive regulation of B cell activation;0.016538231969816!GO:0008287;protein serine/threonine phosphatase complex;0.0165661469091464!GO:0030674;protein binding, bridging;0.0166170852773259!GO:0050811;GABA receptor binding;0.0166170852773259!GO:0008624;induction of apoptosis by extracellular signals;0.0167486590793374!GO:0032386;regulation of intracellular transport;0.0168477769944206!GO:0045746;negative regulation of Notch signaling pathway;0.017186401187694!GO:0015630;microtubule cytoskeleton;0.0172674697036373!GO:0000278;mitotic cell cycle;0.0173921661811982!GO:0004843;ubiquitin-specific protease activity;0.0175905075754345!GO:0000165;MAPKKK cascade;0.0178319766531218!GO:0006650;glycerophospholipid metabolic process;0.0181110947649441!GO:0003725;double-stranded RNA binding;0.0181110947649441!GO:0007005;mitochondrion organization and biogenesis;0.018116483013814!GO:0042226;interleukin-6 biosynthetic process;0.0182013680873762!GO:0031497;chromatin assembly;0.0182471693770493!GO:0019318;hexose metabolic process;0.0186131498562582!GO:0031072;heat shock protein binding;0.0188080287043162!GO:0005085;guanyl-nucleotide exchange factor activity;0.0189695098449436!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0189695098449436!GO:0051235;maintenance of localization;0.0189987364879477!GO:0008139;nuclear localization sequence binding;0.0192310557099472!GO:0001726;ruffle;0.0195039964189794!GO:0006665;sphingolipid metabolic process;0.0195163681187505!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.019857698958758!GO:0045047;protein targeting to ER;0.019857698958758!GO:0008654;phospholipid biosynthetic process;0.020162357124805!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0203216286431625!GO:0008017;microtubule binding;0.0204156429093334!GO:0043021;ribonucleoprotein binding;0.0204494390797711!GO:0051187;cofactor catabolic process;0.0205489584191802!GO:0005048;signal sequence binding;0.0205676785829302!GO:0030522;intracellular receptor-mediated signaling pathway;0.0212770430325542!GO:0048500;signal recognition particle;0.0213224664767377!GO:0003711;transcription elongation regulator activity;0.0213272592734111!GO:0019955;cytokine binding;0.0218499917480089!GO:0030968;unfolded protein response;0.0220391515846894!GO:0045792;negative regulation of cell size;0.0227451294132908!GO:0005996;monosaccharide metabolic process;0.0234314195050397!GO:0045333;cellular respiration;0.0234314195050397!GO:0018193;peptidyl-amino acid modification;0.0239212489976834!GO:0008629;induction of apoptosis by intracellular signals;0.0240403236526374!GO:0002250;adaptive immune response;0.0240403236526374!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0240403236526374!GO:0032763;regulation of mast cell cytokine production;0.0241580360928793!GO:0032762;mast cell cytokine production;0.0241580360928793!GO:0003702;RNA polymerase II transcription factor activity;0.0241857013890856!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.024197586953255!GO:0016311;dephosphorylation;0.0244455211588392!GO:0007032;endosome organization and biogenesis;0.0244982011100233!GO:0002253;activation of immune response;0.024633332816039!GO:0008270;zinc ion binding;0.024633332816039!GO:0009117;nucleotide metabolic process;0.0246455215035267!GO:0030218;erythrocyte differentiation;0.0246455215035267!GO:0019210;kinase inhibitor activity;0.0248370684984709!GO:0051252;regulation of RNA metabolic process;0.0248838089235771!GO:0015631;tubulin binding;0.0249351618630754!GO:0006099;tricarboxylic acid cycle;0.0251127899185041!GO:0046356;acetyl-CoA catabolic process;0.0251127899185041!GO:0000209;protein polyubiquitination;0.0252156841593288!GO:0050727;regulation of inflammatory response;0.0255541310087005!GO:0031347;regulation of defense response;0.0255541310087005!GO:0046914;transition metal ion binding;0.026069113885955!GO:0006458;'de novo' protein folding;0.0261788758257124!GO:0051084;'de novo' posttranslational protein folding;0.0261788758257124!GO:0030118;clathrin coat;0.0261859115257205!GO:0006084;acetyl-CoA metabolic process;0.026278370626349!GO:0051329;interphase of mitotic cell cycle;0.0265615846239597!GO:0002260;lymphocyte homeostasis;0.0265969482584891!GO:0051059;NF-kappaB binding;0.0271191793962407!GO:0051056;regulation of small GTPase mediated signal transduction;0.0271191793962407!GO:0002682;regulation of immune system process;0.0275149533128805!GO:0043433;negative regulation of transcription factor activity;0.0275149533128805!GO:0015923;mannosidase activity;0.027742297205782!GO:0004860;protein kinase inhibitor activity;0.0282387389447048!GO:0030308;negative regulation of cell growth;0.0286345820792086!GO:0045646;regulation of erythrocyte differentiation;0.0286345820792086!GO:0004982;N-formyl peptide receptor activity;0.0289351579051226!GO:0006334;nucleosome assembly;0.0292359536812488!GO:0046834;lipid phosphorylation;0.0293285034126434!GO:0008312;7S RNA binding;0.029716838921831!GO:0046578;regulation of Ras protein signal transduction;0.0300419008083019!GO:0043405;regulation of MAP kinase activity;0.0300419008083019!GO:0045576;mast cell activation;0.0309849772885861!GO:0016072;rRNA metabolic process;0.031130410198762!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0321903669685673!GO:0051092;activation of NF-kappaB transcription factor;0.0325726329930236!GO:0002520;immune system development;0.0326362549200463!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0328196426178385!GO:0002684;positive regulation of immune system process;0.0331445275629594!GO:0048487;beta-tubulin binding;0.0335135961617231!GO:0019079;viral genome replication;0.0347685194333024!GO:0043506;regulation of JNK activity;0.0347685194333024!GO:0001891;phagocytic cup;0.0347685194333024!GO:0030433;ER-associated protein catabolic process;0.034936656351507!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.034936656351507!GO:0019864;IgG binding;0.0349734325164957!GO:0007041;lysosomal transport;0.036214817370275!GO:0009611;response to wounding;0.0370515607580756!GO:0051098;regulation of binding;0.0370515607580756!GO:0030377;U-plasminogen activator receptor activity;0.0370515607580756!GO:0048534;hemopoietic or lymphoid organ development;0.037073153568467!GO:0045926;negative regulation of growth;0.038360217718536!GO:0001836;release of cytochrome c from mitochondria;0.038360217718536!GO:0042254;ribosome biogenesis and assembly;0.0386134891940823!GO:0019883;antigen processing and presentation of endogenous antigen;0.039525059786763!GO:0008625;induction of apoptosis via death domain receptors;0.040323681449526!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0404002316960082!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0407657628332105!GO:0006406;mRNA export from nucleus;0.0416096928690386!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0416289243664664!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0416528254644273!GO:0002819;regulation of adaptive immune response;0.0416528254644273!GO:0004221;ubiquitin thiolesterase activity;0.0419888984773813!GO:0042147;retrograde transport, endosome to Golgi;0.0420567985625717!GO:0003682;chromatin binding;0.0421234147007414!GO:0000082;G1/S transition of mitotic cell cycle;0.04292104240869!GO:0048002;antigen processing and presentation of peptide antigen;0.0429492372479887!GO:0045603;positive regulation of endothelial cell differentiation;0.0436097772545618!GO:0006354;RNA elongation;0.0439024918448209!GO:0006364;rRNA processing;0.0452178961862781!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0455119545812627!GO:0040029;regulation of gene expression, epigenetic;0.0456300898925841!GO:0002444;myeloid leukocyte mediated immunity;0.045820107641021!GO:0051091;positive regulation of transcription factor activity;0.0458267213811932!GO:0043299;leukocyte degranulation;0.0458717644073386!GO:0031098;stress-activated protein kinase signaling pathway;0.0458823458288283!GO:0043300;regulation of leukocyte degranulation;0.0460865445372547!GO:0005869;dynactin complex;0.0464053987471506!GO:0042113;B cell activation;0.0464053987471506!GO:0051050;positive regulation of transport;0.0464053987471506!GO:0043407;negative regulation of MAP kinase activity;0.0464053987471506!GO:0032760;positive regulation of tumor necrosis factor production;0.0472421457537351!GO:0050778;positive regulation of immune response;0.0472421457537351!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0475742140399851!GO:0001817;regulation of cytokine production;0.0477627370011303!GO:0046979;TAP2 binding;0.0478363503390966!GO:0046977;TAP binding;0.0478363503390966!GO:0046978;TAP1 binding;0.0478363503390966!GO:0006338;chromatin remodeling;0.0479407297841317!GO:0009109;coenzyme catabolic process;0.0479566365555556!GO:0030041;actin filament polymerization;0.0490444077883147!GO:0050870;positive regulation of T cell activation;0.0490464274911816!GO:0043623;cellular protein complex assembly;0.0490464274911816!GO:0032318;regulation of Ras GTPase activity;0.0497133379648368!GO:0008022;protein C-terminus binding;0.0497143636649757 | |||
|sample_id=12245 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=blood | |||
|top_motifs=ATF5_CREB3:5.21642831133;CEBPA,B_DDIT3:4.97601968942;NFKB1_REL_RELA:4.81729580813;SPI1:4.68279728668;SPIB:4.24344531809;FOXN1:4.20609396403;ATF4:4.08081897615;ETS1,2:4.02503325908;CREB1:3.72114701483;HLF:3.68803427053;PAX2:3.51844273769;RUNX1..3:3.46564316195;FOXP3:3.33852273058;JUN:3.26925132492;FOX{D1,D2}:3.24121905202;ATF6:3.14821516592;FOX{F1,F2,J1}:3.12505460323;NFE2L2:2.95872448881;ELF1,2,4:2.87414727578;PPARG:2.8189887082;NFIL3:2.80006550012;DMAP1_NCOR{1,2}_SMARC:2.77243741058;MAFB:2.74951607119;BPTF:2.66443427531;NANOG{mouse}:2.60772903571;EP300:2.56042062882;HBP1_HMGB_SSRP1_UBTF:2.55123473359;RXRA_VDR{dimer}:2.41957244449;NFE2:2.38675262313;STAT2,4,6:2.30863476679;FOXO1,3,4:2.27762322576;SREBF1,2:2.25653453219;FOSL2:2.2346447691;ESRRA:2.20175195246;HIF1A:2.14477546194;TGIF1:2.13040533978;PAX3,7:2.05691002892;ALX4:2.02317609977;FOXA2:1.90947105295;NFE2L1:1.88186995169;XBP1:1.84790976909;NFATC1..3:1.80710525719;IRF7:1.77537025686;BACH2:1.76484459856;RORA:1.71724680297;NR1H4:1.67483642446;IRF1,2:1.65926854184;ATF2:1.61207673043;RFX2..5_RFXANK_RFXAP:1.40768926431;RXR{A,B,G}:1.38811115935;SRF:1.25618183522;STAT1,3:1.2331078372;FOS_FOS{B,L1}_JUN{B,D}:1.2285615398;NR5A1,2:1.21646725211;PAX8:1.18116717466;SMAD1..7,9:1.14741634674;TFCP2:0.981425799933;GATA4:0.840169363337;RBPJ:0.826666289515;ALX1:0.787578861762;MYB:0.682022896292;T:0.618661976403;HMGA1,2:0.568324148436;TBX4,5:0.553795670814;EGR1..3:0.45888061144;NKX2-1,4:0.384919195027;POU5F1:0.381697537368;HMX1:0.216422826225;MYFfamily:0.209770005098;POU2F1..3:0.190758918048;MAZ:0.144238715222;TAL1_TCF{3,4,12}:0.105074847284;NFIX:0.0969757159759;GATA6:0.0904494636691;TLX2:0.0492375762061;ZNF423:0.0245508390191;MZF1:0.0244744658759;RFX1:-0.0199070427271;NR3C1:-0.0230566675847;IKZF1:-0.10509517836;SOX2:-0.121912785041;PATZ1:-0.12570011087;ZNF148:-0.127164058229;SP1:-0.258151181489;RREB1:-0.265061395224;EN1,2:-0.274459285953;BREu{core}:-0.293630822817;FOX{I1,J2}:-0.35383297107;TFAP2{A,C}:-0.381105710105;MYOD1:-0.382589803727;SPZ1:-0.383668021442;HOXA9_MEIS1:-0.409311244963;ESR1:-0.454648114332;ZEB1:-0.466869102189;EBF1:-0.512100011131;LEF1_TCF7_TCF7L1,2:-0.593348039353;ELK1,4_GABP{A,B1}:-0.629577412381;MTE{core}:-0.667634836939;ZBTB16:-0.667886091807;HSF1,2:-0.68344182524;PDX1:-0.686493711235;NKX3-2:-0.690380619693;ZNF238:-0.753654079271;TFAP4:-0.831778167443;HNF1A:-0.866671416067;STAT5{A,B}:-0.869875954481;CUX2:-0.878623572068;NKX3-1:-0.882782644178;TFAP2B:-0.886055977544;CDX1,2,4:-0.88882794764;HNF4A_NR2F1,2:-0.895243247382;MEF2{A,B,C,D}:-0.95208463315;LMO2:-0.973616697042;HOX{A5,B5}:-1.00030020856;ADNP_IRX_SIX_ZHX:-1.00950256212;SNAI1..3:-1.01345534513;REST:-1.01450933719;FOXL1:-1.04624825824;GTF2I:-1.05538664647;IKZF2:-1.07150646731;EVI1:-1.07656629481;ZFP161:-1.07859732965;MED-1{core}:-1.08357754681;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10046234058;GLI1..3:-1.15532162429;PRRX1,2:-1.19618696052;FOXP1:-1.23664740765;PRDM1:-1.24903918802;ZIC1..3:-1.26487067347;PITX1..3:-1.28437466887;PAX5:-1.29414440726;TFDP1:-1.30974651773;NHLH1,2:-1.31452483353;NR6A1:-1.36653991743;AHR_ARNT_ARNT2:-1.36819415695;CRX:-1.39461734898;PAX1,9:-1.41529759816;FOXQ1:-1.41627099227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.45155215735;TLX1..3_NFIC{dimer}:-1.48907920113;SOX{8,9,10}:-1.52160653323;VSX1,2:-1.53660646097;HIC1:-1.57050225215;KLF4:-1.57206733389;AR:-1.5849249796;TBP:-1.61584592281;TP53:-1.66371917696;NANOG:-1.66692063518;HES1:-1.68523896042;NFY{A,B,C}:-1.70584514755;FOXD3:-1.75074102529;E2F1..5:-1.81191728863;TEAD1:-1.86295850734;OCT4_SOX2{dimer}:-1.87274023094;MTF1:-1.96487785285;ZBTB6:-2.06809789225;POU6F1:-2.15850843584;SOX5:-2.16696180258;TOPORS:-2.20340973527;GCM1,2:-2.21724351238;FOXM1:-2.29869515922;PBX1:-2.32754251097;XCPE1{core}:-2.39670595206;DBP:-2.43653463451;MYBL2:-2.50470015359;SOX17:-2.52163210907;NKX2-3_NKX2-5:-2.59700366398;GTF2A1,2:-2.69513804628;HOX{A4,D4}:-2.69741490486;UFEwm:-2.75900407561;PAX6:-2.76794620201;GFI1:-2.79387181822;NKX2-2,8:-2.80525210391;PAX4:-2.9551845754;NRF1:-2.978606695;GFI1B:-2.9913539151;CDC5L:-3.04085324591;TEF:-3.04501935209;ZNF384:-3.04779184261;ONECUT1,2:-3.08573422095;GZF1:-3.1309955726;HAND1,2:-3.2381906703;HOX{A6,A7,B6,B7}:-3.35440629666;AIRE:-3.36158098253;LHX3,4:-3.44357799974;NKX6-1,2:-3.49672346268;YY1:-3.70066852099;POU3F1..4:-3.76491003702;ZNF143:-3.81361400236;bHLH_family:-3.8410022111;ARID5B:-4.17203587095;POU1F1:-4.58134419159 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12245-129H4;search_select_hide=table117:FF:12245-129H4 | |||
}} | }} |
Latest revision as of 18:36, 4 June 2020
Name: | Eosinophils, donor2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs12548 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12548
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12548
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.245 |
10 | 10 | 0.0925 |
100 | 100 | 0.476 |
101 | 101 | 0.86 |
102 | 102 | 0.945 |
103 | 103 | 0.286 |
104 | 104 | 0.533 |
105 | 105 | 0.252 |
106 | 106 | 4.6952e-4 |
107 | 107 | 0.748 |
108 | 108 | 0.43 |
109 | 109 | 0.203 |
11 | 11 | 0.262 |
110 | 110 | 0.596 |
111 | 111 | 0.383 |
112 | 112 | 0.393 |
113 | 113 | 0.515 |
114 | 114 | 0.0523 |
115 | 115 | 0.375 |
116 | 116 | 0.633 |
117 | 117 | 0.0208 |
118 | 118 | 0.112 |
119 | 119 | 0.443 |
12 | 12 | 0.264 |
120 | 120 | 0.568 |
121 | 121 | 0.836 |
122 | 122 | 0.493 |
123 | 123 | 0.464 |
124 | 124 | 0.867 |
125 | 125 | 0.166 |
126 | 126 | 0.0926 |
127 | 127 | 0.458 |
128 | 128 | 0.0309 |
129 | 129 | 0.619 |
13 | 13 | 0.286 |
130 | 130 | 0.889 |
131 | 131 | 0.575 |
132 | 132 | 0.0785 |
133 | 133 | 0.949 |
134 | 134 | 0.583 |
135 | 135 | 0.199 |
136 | 136 | 0.697 |
137 | 137 | 7.04679e-4 |
138 | 138 | 0.181 |
139 | 139 | 0.0955 |
14 | 14 | 0.347 |
140 | 140 | 0.639 |
141 | 141 | 0.286 |
142 | 142 | 0.594 |
143 | 143 | 0.0185 |
144 | 144 | 0.95 |
145 | 145 | 0.779 |
146 | 146 | 0.413 |
147 | 147 | 0.656 |
148 | 148 | 0.169 |
149 | 149 | 0.643 |
15 | 15 | 0.123 |
150 | 150 | 0.732 |
151 | 151 | 0.254 |
152 | 152 | 0.146 |
153 | 153 | 0.781 |
154 | 154 | 1 |
155 | 155 | 0.145 |
156 | 156 | 0.899 |
157 | 157 | 0.976 |
158 | 158 | 0.00467 |
159 | 159 | 0.412 |
16 | 16 | 0.582 |
160 | 160 | 0.926 |
161 | 161 | 0.734 |
162 | 162 | 0.0582 |
163 | 163 | 0.351 |
164 | 164 | 0.212 |
165 | 165 | 0.301 |
166 | 166 | 0.722 |
167 | 167 | 0.817 |
168 | 168 | 0.182 |
169 | 169 | 0.0863 |
17 | 17 | 0.303 |
18 | 18 | 0.174 |
19 | 19 | 0.541 |
2 | 2 | 0.93 |
20 | 20 | 0.539 |
21 | 21 | 0.964 |
22 | 22 | 0.162 |
23 | 23 | 0.0206 |
24 | 24 | 0.379 |
25 | 25 | 0.314 |
26 | 26 | 0.156 |
27 | 27 | 0.894 |
28 | 28 | 0.351 |
29 | 29 | 0.386 |
3 | 3 | 0.324 |
30 | 30 | 0.666 |
31 | 31 | 0.897 |
32 | 32 | 0.307 |
33 | 33 | 0.333 |
34 | 34 | 0.569 |
35 | 35 | 0.139 |
36 | 36 | 0.228 |
37 | 37 | 0.103 |
38 | 38 | 0.513 |
39 | 39 | 0.795 |
4 | 4 | 0.824 |
40 | 40 | 0.311 |
41 | 41 | 0.00333 |
42 | 42 | 0.581 |
43 | 43 | 0.0625 |
44 | 44 | 0.93 |
45 | 45 | 0.42 |
46 | 46 | 0.386 |
47 | 47 | 0.641 |
48 | 48 | 0.734 |
49 | 49 | 0.133 |
5 | 5 | 0.142 |
50 | 50 | 0.956 |
51 | 51 | 0.398 |
52 | 52 | 0.298 |
53 | 53 | 0.389 |
54 | 54 | 0.345 |
55 | 55 | 0.949 |
56 | 56 | 0.792 |
57 | 57 | 0.532 |
58 | 58 | 0.223 |
59 | 59 | 0.0816 |
6 | 6 | 0.842 |
60 | 60 | 0.0408 |
61 | 61 | 0.299 |
62 | 62 | 0.0934 |
63 | 63 | 0.677 |
64 | 64 | 0.599 |
65 | 65 | 0.233 |
66 | 66 | 0.291 |
67 | 67 | 0.491 |
68 | 68 | 0.339 |
69 | 69 | 0.519 |
7 | 7 | 0.26 |
70 | 70 | 0.22 |
71 | 71 | 0.0425 |
72 | 72 | 0.452 |
73 | 73 | 0.191 |
74 | 74 | 0.0944 |
75 | 75 | 0.256 |
76 | 76 | 0.191 |
77 | 77 | 0.665 |
78 | 78 | 0.245 |
79 | 79 | 0.922 |
8 | 8 | 0.653 |
80 | 80 | 0.0284 |
81 | 81 | 0.428 |
82 | 82 | 0.106 |
83 | 83 | 0.132 |
84 | 84 | 0.439 |
85 | 85 | 0.0746 |
86 | 86 | 0.021 |
87 | 87 | 0.319 |
88 | 88 | 0.696 |
89 | 89 | 0.127 |
9 | 9 | 0.218 |
90 | 90 | 0.316 |
91 | 91 | 0.486 |
92 | 92 | 0.398 |
93 | 93 | 0.064 |
94 | 94 | 0.0661 |
95 | 95 | 0.208 |
96 | 96 | 0.503 |
97 | 97 | 0.928 |
98 | 98 | 0.122 |
99 | 99 | 0.0134 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12548
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000249 human eosinophil- heparinase treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000771 (eosinophil)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000054 (human eosinophil sample)
0000249 (human eosinophil- heparinase treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)