FF:12243-129H2: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Basophils, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12575
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	basophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-93-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005610

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12575		CAGE		DRX008118		DRR008990

Accession ID Hg19

Library id		BAM		CTSS
CNhs12575		DRZ000415		DRZ001800

Accession ID Hg38

Library id		BAM		CTSS
CNhs12575		DRZ011765		DRZ013150

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.166
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0625
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.179
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0625
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.295
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.117
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.379
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0625
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.104
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.285
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.137
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.56
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0.166
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.249
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.117
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.578
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.421
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.117
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.117
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.31
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.456
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.117
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.35
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.629
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.166
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.688
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.267
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.117
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.117
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.117
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.35
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.733
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.521
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.694
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.685
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.622
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.521
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.456
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.166
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.166
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.0866
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.826
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.492
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.644
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0625
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.659
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.727
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0625
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.377
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.681
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.35
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0.117
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0625
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.574
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.406
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.209
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.0625
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.501
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.249
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.91
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.35
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.166
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12575

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.04594e-13
MA0003.1	MA0003.1	0.183
MA0004.1	MA0004.1	0.376
MA0006.1	MA0006.1	0.564
MA0007.1	MA0007.1	0.644
MA0009.1	MA0009.1	0.291
MA0014.1	MA0014.1	0.809
MA0017.1	MA0017.1	0.359
MA0018.2	MA0018.2	1.29157e-4
MA0019.1	MA0019.1	0.983
MA0024.1	MA0024.1	0.0187
MA0025.1	MA0025.1	1.49032e-5
MA0027.1	MA0027.1	0.879
MA0028.1	MA0028.1	0.0952
MA0029.1	MA0029.1	0.39
MA0030.1	MA0030.1	0.0469
MA0031.1	MA0031.1	0.0698
MA0035.2	MA0035.2	0.59
MA0038.1	MA0038.1	0.814
MA0039.2	MA0039.2	0.605
MA0040.1	MA0040.1	0.143
MA0041.1	MA0041.1	0.274
MA0042.1	MA0042.1	0.249
MA0043.1	MA0043.1	2.60682e-11
MA0046.1	MA0046.1	0.0657
MA0047.2	MA0047.2	0.355
MA0048.1	MA0048.1	0.662
MA0050.1	MA0050.1	8.27689e-6
MA0051.1	MA0051.1	0.01
MA0052.1	MA0052.1	1.31634e-4
MA0055.1	MA0055.1	0.39
MA0057.1	MA0057.1	0.236
MA0058.1	MA0058.1	0.185
MA0059.1	MA0059.1	0.741
MA0060.1	MA0060.1	0.00113
MA0061.1	MA0061.1	1.83643e-20
MA0062.2	MA0062.2	0.00389
MA0065.2	MA0065.2	0.0872
MA0066.1	MA0066.1	0.019
MA0067.1	MA0067.1	4.18416e-8
MA0068.1	MA0068.1	0.0194
MA0069.1	MA0069.1	0.654
MA0070.1	MA0070.1	0.0376
MA0071.1	MA0071.1	0.412
MA0072.1	MA0072.1	0.399
MA0073.1	MA0073.1	0.0523
MA0074.1	MA0074.1	0.284
MA0076.1	MA0076.1	0.265
MA0077.1	MA0077.1	0.167
MA0078.1	MA0078.1	0.679
MA0079.2	MA0079.2	0.829
MA0080.2	MA0080.2	9.28751e-15
MA0081.1	MA0081.1	1.35983e-4
MA0083.1	MA0083.1	0.793
MA0084.1	MA0084.1	0.827
MA0087.1	MA0087.1	0.891
MA0088.1	MA0088.1	0.0548
MA0090.1	MA0090.1	0.109
MA0091.1	MA0091.1	0.996
MA0092.1	MA0092.1	0.48
MA0093.1	MA0093.1	0.453
MA0099.2	MA0099.2	5.15742e-45
MA0100.1	MA0100.1	0.621
MA0101.1	MA0101.1	8.41152e-18
MA0102.2	MA0102.2	2.17319e-10
MA0103.1	MA0103.1	0.0397
MA0104.2	MA0104.2	0.521
MA0105.1	MA0105.1	1.14433e-16
MA0106.1	MA0106.1	0.129
MA0107.1	MA0107.1	7.23613e-22
MA0108.2	MA0108.2	0.804
MA0111.1	MA0111.1	0.953
MA0112.2	MA0112.2	0.00257
MA0113.1	MA0113.1	0.602
MA0114.1	MA0114.1	0.807
MA0115.1	MA0115.1	0.0992
MA0116.1	MA0116.1	0.0028
MA0117.1	MA0117.1	0.00985
MA0119.1	MA0119.1	0.946
MA0122.1	MA0122.1	0.939
MA0124.1	MA0124.1	0.721
MA0125.1	MA0125.1	0.199
MA0131.1	MA0131.1	0.679
MA0135.1	MA0135.1	0.334
MA0136.1	MA0136.1	4.37326e-18
MA0137.2	MA0137.2	0.722
MA0138.2	MA0138.2	0.241
MA0139.1	MA0139.1	0.304
MA0140.1	MA0140.1	0.346
MA0141.1	MA0141.1	0.395
MA0142.1	MA0142.1	0.973
MA0143.1	MA0143.1	0.714
MA0144.1	MA0144.1	0.209
MA0145.1	MA0145.1	0.416
MA0146.1	MA0146.1	0.252
MA0147.1	MA0147.1	0.789
MA0148.1	MA0148.1	0.437
MA0149.1	MA0149.1	0.882
MA0150.1	MA0150.1	3.01374e-18
MA0152.1	MA0152.1	0.134
MA0153.1	MA0153.1	0.00584
MA0154.1	MA0154.1	6.25726e-4
MA0155.1	MA0155.1	0.683
MA0156.1	MA0156.1	8.50767e-15
MA0157.1	MA0157.1	0.0966
MA0159.1	MA0159.1	0.231
MA0160.1	MA0160.1	0.0552
MA0162.1	MA0162.1	0.861
MA0163.1	MA0163.1	4.90465e-4
MA0164.1	MA0164.1	0.863
MA0258.1	MA0258.1	0.0788
MA0259.1	MA0259.1	0.678

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12575

Novel motif	Logo	P-value
1	1	0.564
10	10	0.0699
100	100	0.432
101	101	0.87
102	102	0.926
103	103	0.588
104	104	0.431
105	105	0.0332
106	106	2.34147e-4
107	107	0.434
108	108	0.672
109	109	0.4
11	11	0.534
110	110	0.551
111	111	0.287
112	112	0.592
113	113	0.0907
114	114	0.23
115	115	0.149
116	116	0.49
117	117	0.101
118	118	0.324
119	119	0.949
12	12	0.171
120	120	0.564
121	121	0.263
122	122	0.217
123	123	0.262
124	124	0.863
125	125	0.605
126	126	0.191
127	127	0.417
128	128	0.0518
129	129	0.76
13	13	0.254
130	130	0.414
131	131	0.719
132	132	0.0116
133	133	0.38
134	134	0.863
135	135	0.4
136	136	0.9
137	137	0.0031
138	138	0.288
139	139	0.153
14	14	0.318
140	140	0.235
141	141	0.771
142	142	0.118
143	143	0.00639
144	144	0.773
145	145	0.76
146	146	0.839
147	147	0.291
148	148	0.0734
149	149	0.69
15	15	0.214
150	150	0.585
151	151	0.143
152	152	0.0721
153	153	0.652
154	154	0.476
155	155	0.455
156	156	0.698
157	157	0.857
158	158	0.0602
159	159	0.129
16	16	0.844
160	160	0.921
161	161	0.942
162	162	0.0708
163	163	0.327
164	164	0.216
165	165	0.289
166	166	0.592
167	167	0.61
168	168	0.142
169	169	0.0449
17	17	0.405
18	18	0.281
19	19	0.874
2	2	0.681
20	20	0.519
21	21	0.828
22	22	0.247
23	23	0.142
24	24	0.597
25	25	0.266
26	26	0.219
27	27	0.794
28	28	0.523
29	29	0.207
3	3	0.415
30	30	0.524
31	31	0.776
32	32	0.172
33	33	0.452
34	34	0.563
35	35	0.297
36	36	0.177
37	37	0.237
38	38	0.69
39	39	0.995
4	4	0.886
40	40	0.219
41	41	0.00179
42	42	0.522
43	43	0.0382
44	44	0.559
45	45	0.642
46	46	0.431
47	47	0.849
48	48	0.945
49	49	0.134
5	5	0.245
50	50	0.847
51	51	0.422
52	52	0.408
53	53	0.418
54	54	0.46
55	55	0.663
56	56	0.963
57	57	0.736
58	58	0.205
59	59	0.269
6	6	0.797
60	60	0.0833
61	61	0.484
62	62	0.131
63	63	0.937
64	64	0.596
65	65	0.433
66	66	0.138
67	67	0.626
68	68	0.248
69	69	0.471
7	7	0.232
70	70	0.205
71	71	0.098
72	72	0.259
73	73	0.151
74	74	0.28
75	75	0.286
76	76	0.412
77	77	0.963
78	78	0.638
79	79	0.643
8	8	0.727
80	80	0.013
81	81	0.599
82	82	0.55
83	83	0.102
84	84	0.455
85	85	0.0526
86	86	0.0435
87	87	0.298
88	88	0.726
89	89	0.999
9	9	0.265
90	90	0.421
91	91	0.303
92	92	0.546
93	93	0.293
94	94	0.095
95	95	0.281
96	96	0.737
97	97	0.849
98	98	0.332
99	99	9.363e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12575

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000212 human basophil heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005610
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000094,CL:0000037,CL:0000566,CL:0000767,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX008118;DRR008990;DRZ000415;DRZ001800;DRZ011765;DRZ013150
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000013,FF:0000212
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.56!364.59!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.56!360.88!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.32!208.54!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.26!179.28!IRF8;;chr19:45971246..45971265,+!p1@FOSB!2.17!2531.09!FOSB;;chr11:47400062..47400077,-!p2@SPI1!2.11!129.12!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.04!198.63!RUNX3;;chr14:75745523..75745537,+!p1@FOS!1.97!10252.08!FOS;;chr2:157189180..157189290,-!p1@NR4A2!1.85!345.86!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!1.84!757.67!MAFB;;chr9:110252035..110252057,-!p1@KLF4!1.80!939.11!KLF4;;chr11:47399947..47399961,-!p3@SPI1!1.80!62.70!SPI1;;chr7:50344289..50344323,+!p1@IKZF1!1.74!54.50!IKZF1;;chr6:391743..391759,+!p1@IRF4!1.68!46.44!IRF4;;chr3:39195075..39195088,-!p1@CSRNP1!1.66!266.75!CSRNP1;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.90!ZNF385A;;chr10:8096631..8096660,+!p1@GATA3!1.63!50.32!GATA3;;chr19:54041669..54041697,+!p2@ZNF331!1.62!40.72!ZNF331;;chr9:110250697..110250738,-!p2@KLF4!1.60!45.83!KLF4;;chr2:145277640..145277771,-!p1@ZEB2!1.58!473.89!ZEB2;;chr19:54058073..54058088,+!p1@ZNF331!1.57!36.23!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.57!35.92!IKZF1;;chr2:70142232..70142251,+!p1@MXD1!1.56!189.65!MXD1;;chr21:36260295..36260310,-!p3@RUNX1!1.56!55.89!RUNX1;;chr3:39195139..39195150,-!p3@CSRNP1!1.56!44.12!CSRNP1;;chr1:25256439..25256476,-!p3@RUNX3!1.55!34.68!RUNX3;;chrX:106960180..106960197,-!p2@TSC22D3!1.54!125.40!TSC22D3;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!80.04!NFKBIA;;chr19:45252008..45252024,+!p2@BCL3!1.52!101.87!BCL3;;chr2:145271342..145271377,-!p5@ZEB2!1.52!32.20!ZEB2;;chr11:47400032..47400043,-!p5@SPI1!1.52!32.05!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.52!31.89!SPI1;;chr12:72056800..72056834,+!p1@THAP2!1.51!42.26!THAP2;;chr10:3827371..3827386,-!p2@KLF6!1.50!249.25!KLF6;;chr9:102584262..102584276,+!p1@NR4A3!1.46!60.53!NR4A3;;chr19:16435625..16435682,+!p1@KLF2!1.44!813.71!KLF2;;chr3:39195037..39195069,-!p2@CSRNP1!1.44!159.62!CSRNP1;;chr11:47400045..47400060,-!p6@SPI1!1.44!26.32!SPI1;;chr2:192015701..192015743,-!p1@STAT4!1.43!34.99!STAT4;;chr14:35873947..35873965,-!p1@NFKBIA!1.41!1502.80!NFKBIA;;chr17:45810594..45810608,+!p1@TBX21!1.39!23.69!TBX21;;chr12:52445218..52445237,+!p1@NR4A1!1.37!274.33!NR4A1;;chr10:35484053..35484076,+!p1@CREM!1.36!53.10!CREM;;chr21:34442439..34442455,+!p1@OLIG1!1.35!21.52!OLIG1;;chr12:72056773..72056796,+!p3@THAP2!1.34!26.94!THAP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.32!511.82!TSC22D3;;chr19:12902289..12902307,+!p1@JUNB!1.31!4265.34!JUNB;;chr16:31885093..31885165,+!p1@ZNF267!1.30!278.20!ZNF267;;chrX:106960221..106960236,-!p3@TSC22D3!1.30!52.02!TSC22D3;;chr18:3448455..3448480,+!p5@TGIF1!1.30!34.68!TGIF1;;chr9:102584241..102584261,+!p4@NR4A3!1.30!28.95!NR4A3;;chr4:83822199..83822239,+!p2@THAP9!1.30!22.45!THAP9;;chr12:57914286..57914304,-!p1@DDIT3!1.29!644.81!DDIT3;;chr19:36391434..36391450,-!p1@NFKBID!1.29!36.38!NFKBID;;chr10:3827389..3827408,-!p1@KLF6!1.28!1347.52!KLF6;;chr6:15246200..15246214,+!p2@JARID2!1.28!48.92!JARID2;;chr9:117150254..117150271,-!p1@AKNA!1.28!48.46!AKNA;;chr9:102584159..102584174,+!p2@NR4A3!1.28!32.51!NR4A3;;chrX:153305787..153305807,-!p3@MECP2!1.28!18.27!MECP2;;chr1:59249688..59249703,-!p3@JUN!1.25!100.01!JUN;;chr2:61108695..61108753,+!p1@REL!1.24!109.45!REL;;chr9:110251836..110251887,-!p4@KLF4!1.24!21.52!KLF4;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.26!KDM5D;;chr17:38498594..38498661,+!p2@RARA!1.23!53.41!RARA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.22!793.74!NFKBIZ;;chr10:51572408..51572454,+!p3@NCOA4!1.22!89.33!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.22!19.04!PLAGL1;;chr19:45971060..45971122,+!p3@FOSB!1.22!15.64!FOSB;;chr10:104154246..104154347,+!p3@NFKB2!1.21!91.50!NFKB2;;chr8:81397820..81397836,+!p2@ZBTB10!1.21!18.89!ZBTB10;;chr17:38497662..38497713,+!p4@RARA!1.21!17.80!RARA;;chr12:72056749..72056767,+!p6@THAP2!1.21!16.72!THAP2;;chr6:44233252..44233296,-!p1@NFKBIE!1.20!142.74!NFKBIE;;chr10:94449703..94449718,+!p1@HHEX!1.20!56.82!HHEX;;chr12:52431016..52431071,+!p4@NR4A1!1.20!17.18!NR4A1;;chr2:68592394..68592405,+!p2@PLEK!1.20!14.71!PLEK;;chr4:38665769..38665801,+!p2@KLF3!1.18!126.18!KLF3;;chr2:97202480..97202499,+!p1@ARID5A!1.17!139.33!ARID5A;;chr1:212782094..212782109,+!p1@ATF3!1.16!365.68!ATF3;;chr7:17338324..17338341,+!p3@AHR!1.16!44.90!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!1.16!18.89!NFKBIZ;;chr2:61108808..61108821,+!p3@REL!1.16!16.87!REL;;chr1:59249707..59249727,-!p1@JUN!1.15!538.91!JUN;;chr17:38498402..38498445,+!p3@RARA!1.15!47.06!RARA;;chr19:13213662..13213686,-!p1@LYL1!1.15!19.51!LYL1;;chr19:45251395..45251432,+!p8@BCL3!1.15!13.00!BCL3;;chr4:103422499..103422632,+!p1@NFKB1!1.14!267.99!NFKB1;;chr1:156470515..156470542,-!p2@MEF2D!1.14!66.88!MEF2D;;chr9:3525727..3525828,-!p2@RFX3!1.14!32.67!RFX3;;chr20:48807456..48807475,+!p3@CEBPB!1.14!24.46!CEBPB;;chr7:115670804..115670825,-!p1@TFEC!1.14!12.69!TFEC;;chr7:17338266..17338282,+!p1@AHR!1.13!135.00!AHR;;chrX:129244454..129244488,-!p1@ELF4!1.13!90.26!ELF4;;chr20:56195474..56195506,-!p1@ZBP1!1.13!12.39!ZBP1;;chr8:103667935..103667960,-!p1@KLF10!1.12!532.88!KLF10;;chr11:128563948..128564003,+!p1@FLI1!1.12!145.68!FLI1;;chr4:106068026..106068084,+!p1@TET2!1.12!109.76!TET2;;chr7:149470641..149470694,-!p1@ZNF467!1.12!55.27!ZNF467;;chr7:104654690..104654704,+!p2@MLL5!1.12!24.15!MLL5;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.96!NFATC2;;chr6:106534192..106534224,+!p1@PRDM1!1.11!33.75!PRDM1;;chr6:106534230..106534254,+!p2@PRDM1!1.11!29.88!PRDM1;;chrX:106960249..106960260,-!p5@TSC22D3!1.11!19.04!TSC22D3;;chr10:8096772..8096787,+!p2@GATA3!1.11!14.09!GATA3;;chr10:135044190..135044229,+!p3@UTF1!1.11!11.77!UTF1;;chr1:151030536..151030549,+!p8@MLLT11!1.11!11.77!MLLT11;;chr1:157108130..157108173,-!p1@ETV3!1.10!83.76!ETV3;;chr19:45250948..45250998,+!p3@BCL3!1.10!29.26!BCL3;;chr8:123793988..123794016,+!p1@ZHX2!1.10!20.59!ZHX2;;chr5:142782823..142782854,-!p3@NR3C1!1.10!16.57!NR3C1;;chr2:208394817..208394834,+!p3@CREB1!1.09!45.67!CREB1;;chr2:61108878..61108891,+!p5@REL!1.09!11.30!REL;;chrX:129244430..129244442,-!p5@ELF4!1.09!11.30!ELF4;;chr19:18392422..18392440,-!p1@JUND!1.08!1509.61!JUND;;chr6:15246261..15246312,+!p1@JARID2!1.08!271.24!JARID2;;chr14:35872453..35872485,-!p2@NFKBIA!1.08!27.09!NFKBIA;;chr7:128577972..128578047,+!p1@IRF5!1.08!17.34!IRF5;;chr19:45972701..45972774,+!p2@FOSB!1.08!15.02!FOSB;;chr2:231090433..231090469,+!p1@SP140!1.08!10.99!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!1.08!10.99!LRRFIP1;;chr2:8822176..8822196,+!p1@ID2!1.07!1497.38!ID2;;chr5:176735063..176735088,-!p2@MXD3!1.07!10.68!MXD3;;chr9:129567282..129567353,+!p1@ZBTB43!1.06!138.10!ZBTB43;;chr20:48807430..48807439,+!p8@CEBPB!1.06!15.79!CEBPB;;chr2:10183651..10183713,+!p1@KLF11!1.05!74.78!KLF11;;chr19:33793430..33793447,-!p1@CEBPA!1.05!43.66!CEBPA;;chr6:15246217..15246228,+!p3@JARID2!1.05!18.27!JARID2;;chr9:102584278..102584285,+!p5@NR4A3!1.05!10.22!NR4A3;;chr11:47399920..47399931,-!p7@SPI1!1.05!10.22!SPI1;;chr2:28615716..28615733,+!p1@FOSL2!1.04!476.99!FOSL2;;chr19:6110474..6110551,-!p1@RFX2!1.04!61.93!RFX2;;chr15:60884706..60884743,-!p1@RORA!1.04!52.64!RORA;;chr12:54694758..54694805,-!p1@NFE2!1.04!12.08!NFE2;;chr7:50344251..50344288,+!p3@IKZF1!1.04!10.06!IKZF1;;chrY:2803415..2803468,+!p1@ZFY!1.04!10.06!ZFY;;chr19:45504688..45504782,+!p1@RELB!1.03!60.22!RELB;;chr3:23986824..23986848,+!p2@NR1D2!1.03!55.58!NR1D2;;chr3:150126904..150126958,+!p7@TSC22D2!1.03!17.18!TSC22D2;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!14.09!ZBTB16;;chr14:75746722..75746777,+!p2@FOS!1.03!12.39!FOS;;chr17:38020392..38020477,-!p1@IKZF3!1.03!9.75!IKZF3;;chr5:153857778..153857794,-!p1@HAND1!1.03!9.60!HAND1;;chr2:28616358..28616380,+!p3@FOSL2!1.02!50.01!FOSL2;;chr3:5020939..5020952,+!p2@BHLHE40!1.02!30.19!BHLHE40;;chr8:81397876..81397898,+!p5@ZBTB10!1.02!11.30!ZBTB10;;chr3:5021113..5021180,+!p1@BHLHE40!1.01!651.16!BHLHE40;;chr1:156470494..156470505,-!p3@MEF2D!1.01!13.62!MEF2D;;chr2:208031943..208031978,-!p5@KLF7!1.01!12.54!KLF7;;chr5:131826457..131826514,-!p1@IRF1!1.00!360.26!IRF1;;chr9:102584128..102584144,+!p3@NR4A3!1.00!17.34!NR4A3;;chr9:110252074..110252079,-!p3@KLF4!1.00!15.17!KLF4;;chr21:36260343..36260402,-!p6@RUNX1!1.00!14.55!RUNX1;;chr2:8819364..8819390,+!p2@ID2!1.00!8.98!ID2;;chr22:38597987..38598021,+!p2@MAFF!0.99!54.50!MAFF;;chr19:50922187..50922204,+!p1@SPIB!0.99!8.82!SPIB;;chr19:54041645..54041661,+!p5@ZNF331!0.99!8.82!ZNF331;;chr13:41593425..41593480,-!p1@ELF1!0.98!56.20!ELF1;;chr21:36421535..36421610,-!p2@RUNX1!0.98!31.12!RUNX1;;chr2:61108771..61108789,+!p4@REL!0.98!13.16!REL;;chr7:106809470..106809481,+!p2@HBP1!0.98!12.08!HBP1;;chr8:81397846..81397860,+!p3@ZBTB10!0.98!10.68!ZBTB10;;chr2:70142189..70142223,+!p2@MXD1!0.97!61.62!MXD1;;chr19:42636586..42636607,-!p1@POU2F2!0.97!23.69!POU2F2;;chr10:35416142..35416169,+!p3@CREM!0.97!22.76!CREM;;chr19:47616992..47617011,-!p4@ZC3H4!0.97!18.27!ZC3H4;;chr14:35874077..35874091,-!p8@NFKBIA!0.97!8.36!NFKBIA;;chr1:37940170..37940190,+!p1@ZC3H12A!0.96!102.49!ZC3H12A;;chr18:77155922..77155939,+!p1@NFATC1!0.96!22.76!NFATC1;;chr19:50432132..50432217,+!p2@ATF5!0.96!9.75!ATF5;;chr8:53373491..53373506,-!p4@ST18!0.96!8.21!ST18;;chr3:63953435..63953499,+!p1@ATXN7!0.96!8.05!ATXN7;;chr10:104155480..104155534,+!p2@NFKB2!0.95!52.48!NFKB2;;chr14:74226747..74226779,-!p3@C14orf43!0.95!45.52!C14orf43;;chr2:238600933..238600985,+!p3@LRRFIP1!0.95!44.59!LRRFIP1;;chr14:64971288..64971316,-!p2@ZBTB25!0.95!24.93!ZBTB25;;chr10:43932296..43932360,+!p1@ZNF487P!0.95!16.87!ZNF487P;;chr13:41593392..41593403,-!p7@ELF1!0.95!7.90!ELF1;;chr3:193853927..193853944,+!p1@HES1!0.94!262.72!HES1;;chr4:38665810..38665827,+!p1@KLF3!0.94!115.96!KLF3;;chr2:28618532..28618610,+!p4@FOSL2!0.94!13.31!FOSL2;;chr6:106546808..106546833,+!p3@PRDM1!0.94!9.75!PRDM1;;chr9:110250629..110250642,-!p7@KLF4!0.94!7.74!KLF4;;chr7:104654718..104654741,+!p3@MLL5!0.93!11.15!MLL5;;chr2:192015677..192015691,-!p3@STAT4!0.93!7.59!STAT4;;chr4:57522598..57522664,-!p3@HOPX!0.93!7.59!HOPX;;chr2:157189617..1571896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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000767;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Basophils%252c%2520donor3.CNhs12575.12243-129H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Basophils%252c%2520donor3.CNhs12575.12243-129H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Basophils%252c%2520donor3.CNhs12575.12243-129H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Basophils%252c%2520donor3.CNhs12575.12243-129H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Basophils%252c%2520donor3.CNhs12575.12243-129H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12243-129H2
 |is_a=EFO:0002091;;FF:0000212
 |is_obsolete=
+|library_id=CNhs12575
+|library_id_phase_based=2:CNhs12575
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12243
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12243
 |name=Basophils, donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12575,LSID917,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=3H100-93-5
@@ Line 59: / Line 79: @@
 |rna_weight_ug=3.52176
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+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=PAX2:3.44522018768;RUNX1..3:3.41687781226;NFKB1_REL_RELA:3.2417540173;NFE2:2.99845883895;BACH2:2.94629463348;ETS1,2:2.9455569393;EP300:2.94545591577;FOS_FOS{B,L1}_JUN{B,D}:2.93206229424;SPIB:2.85945190257;FOSL2:2.83971807959;ATF5_CREB3:2.70604743711;SPI1:2.66609899196;RFX2..5_RFXANK_RFXAP:2.5533244226;NFIL3:2.53420705595;ATF4:2.45165586764;JUN:2.44752018071;CREB1:2.39197936849;DMAP1_NCOR{1,2}_SMARC:2.10972229173;RORA:2.06773564834;CEBPA,B_DDIT3:2.04204336283;ELF1,2,4:2.03408722256;FOXO1,3,4:2.01382443153;HIF1A:1.95022702924;TGIF1:1.92760688353;NANOG{mouse}:1.91901311108;HLF:1.91012506586;FOX{D1,D2}:1.72103601365;PAX3,7:1.69379910742;NFE2L2:1.6819226476;SREBF1,2:1.66056677692;PPARG:1.5655574162;MAFB:1.54406984262;RFX1:1.53970626753;HMX1:1.51516811653;IRF1,2:1.46982012614;FOX{F1,F2,J1}:1.44262985731;BPTF:1.36413900231;FOXN1:1.25666283645;NKX2-1,4:1.2401541839;RXRA_VDR{dimer}:1.22220092304;GLI1..3:1.14566223585;ATF2:1.12917676442;HBP1_HMGB_SSRP1_UBTF:1.08851603278;ATF6:1.07223009036;NFE2L1:0.970320793372;HMGA1,2:0.95690023865;FOXP3:0.916071413329;SMAD1..7,9:0.911318020487;IRF7:0.859896340581;T:0.796195328378;RBPJ:0.744810026075;NANOG:0.666612884252;STAT2,4,6:0.648127078588;TBX4,5:0.601273256298;POU5F1:0.552835538765;NFATC1..3:0.542670130759;XBP1:0.521144850629;AHR_ARNT_ARNT2:0.513157053913;MEF2{A,B,C,D}:0.46908732882;HES1:0.463841471377;TFCP2:0.315013424125;BREu{core}:0.306419119904;TLX2:0.246034079395;FOXL1:0.217936762583;EGR1..3:0.210859472245;TBP:0.203815911052;SRF:0.163292119966;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.143240724197;TFAP2{A,C}:0.137968997582;ZNF238:0.0723150969423;ESRRA:0.0532491413686;ALX4:0.0453241615231;SOX2:0.0192243557979;PAX8:0.0170526651422;MZF1:-0.0249825701624;HSF1,2:-0.0273878343168;POU2F1..3:-0.0300490367126;NR1H4:-0.0754097813682;TFAP4:-0.100307490964;MYFfamily:-0.159862315593;TFAP2B:-0.191850963285;MTE{core}:-0.201978823159;NHLH1,2:-0.204630996288;PATZ1:-0.224797538419;HOX{A5,B5}:-0.231457247304;EN1,2:-0.23270433534;ZNF148:-0.249557385167;ESR1:-0.260710650292;MED-1{core}:-0.265981076264;STAT5{A,B}:-0.309252147898;TAL1_TCF{3,4,12}:-0.342696282252;DBP:-0.346575312985;HOXA9_MEIS1:-0.351152426894;SP1:-0.354157959247;TFDP1:-0.392949859761;MYB:-0.397986007142;GCM1,2:-0.422696800695;MTF1:-0.480965788863;EBF1:-0.497617913821;SOX5:-0.503299906335;RXR{A,B,G}:-0.517559820608;GATA6:-0.518099517738;MAZ:-0.557607773895;PRRX1,2:-0.563635657696;FOX{I1,J2}:-0.567567182708;PAX5:-0.568909954774;NR6A1:-0.570892029838;REST:-0.60262522183;NFY{A,B,C}:-0.605444582806;ZNF384:-0.615910440094;FOXP1:-0.619521208153;OCT4_SOX2{dimer}:-0.681359171933;ZNF423:-0.688969885714;LEF1_TCF7_TCF7L1,2:-0.71158619591;ZFP161:-0.719107523273;GATA4:-0.719749742541;HIC1:-0.730027332964;CDX1,2,4:-0.739475350832;VSX1,2:-0.761738277409;SPZ1:-0.767770403238;FOXD3:-0.798735469794;NR5A1,2:-0.801323839906;ZEB1:-0.806575644695;NKX3-1:-0.821394707126;HNF4A_NR2F1,2:-0.846191200785;NKX6-1,2:-0.868482873255;HOX{A6,A7,B6,B7}:-0.874901299454;AIRE:-0.897188371424;XCPE1{core}:-0.89761863328;SOX{8,9,10}:-0.915498713108;PAX4:-0.922095276061;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.923560337483;E2F1..5:-0.934269024389;RREB1:-0.934663193675;PRDM1:-0.952910101535;HNF1A:-0.956875256037;STAT1,3:-0.975853459938;MYBL2:-0.977823419037;PAX6:-0.985443776537;PITX1..3:-0.985545149343;IKZF1:-0.997754821152;FOXA2:-1.05836681654;TP53:-1.06607428267;SNAI1..3:-1.10620735442;NKX2-3_NKX2-5:-1.11473946264;GTF2A1,2:-1.13489176034;MYOD1:-1.15725108786;PDX1:-1.15978367462;GTF2I:-1.1877007929;PAX1,9:-1.21394877858;ZIC1..3:-1.2400806995;PBX1:-1.27483681534;ELK1,4_GABP{A,B1}:-1.29779011524;ADNP_IRX_SIX_ZHX:-1.30762809684;TLX1..3_NFIC{dimer}:-1.31498220004;ZBTB16:-1.32802958202;FOXQ1:-1.33467667413;TEAD1:-1.38942386289;CUX2:-1.41434859406;IKZF2:-1.44979891645;CRX:-1.45451396609;ALX1:-1.46087373256;NR3C1:-1.46146784266;ZBTB6:-1.46207914506;LMO2:-1.47034263518;NFIX:-1.47658790673;GFI1B:-1.57084576137;FOXM1:-1.60619178324;bHLH_family:-1.60754533193;GZF1:-1.63757312447;GFI1:-1.69053739604;LHX3,4:-1.70083410736;NKX2-2,8:-1.76445070592;ARID5B:-1.83203373451;POU6F1:-1.85391286905;TOPORS:-1.86179313501;NRF1:-1.90116344149;POU1F1:-1.94181673224;AR:-2.00158248997;KLF4:-2.05097703152;CDC5L:-2.21516943082;TEF:-2.27651615142;UFEwm:-2.31102706629;SOX17:-2.32432747993;ZNF143:-2.39546765672;NKX3-2:-2.39932545758;YY1:-2.40179393462;HOX{A4,D4}:-2.40938841389;HAND1,2:-2.48683334839;EVI1:-2.49820750619;POU3F1..4:-2.88689333218;ONECUT1,2:-3.10425639432
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12243-129H2;search_select_hide=table117:FF:12243-129H2
 }}

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FF:12243-129H2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0