FF:12241-129G9: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Basophils, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12546
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	basophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-93-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005439

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12546		CAGE		DRX008045		DRR008917

Accession ID Hg19

Library id		BAM		CTSS
CNhs12546		DRZ000342		DRZ001727

Accession ID Hg38

Library id		BAM		CTSS
CNhs12546		DRZ011692		DRZ013077

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.144
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.197
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.347
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0986
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.472
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.252
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.144
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.713
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	1.169
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.252
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.723
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.144
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.297
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.472
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.657
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.411
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.252
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.144
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0869
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.9
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.144
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.694
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.693
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.744
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.618
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.363
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.144
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.129
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.897
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.518
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.763
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.657
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.777
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.851
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.71
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.338
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.681
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.411
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.144
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.657
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.411
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.928
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.411
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.252
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12546

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.04749e-16
MA0003.1	MA0003.1	0.0792
MA0004.1	MA0004.1	0.659
MA0006.1	MA0006.1	0.94
MA0007.1	MA0007.1	0.68
MA0009.1	MA0009.1	0.289
MA0014.1	MA0014.1	0.623
MA0017.1	MA0017.1	0.24
MA0018.2	MA0018.2	6.63923e-5
MA0019.1	MA0019.1	0.563
MA0024.1	MA0024.1	0.0207
MA0025.1	MA0025.1	6.65797e-5
MA0027.1	MA0027.1	0.764
MA0028.1	MA0028.1	0.94
MA0029.1	MA0029.1	0.829
MA0030.1	MA0030.1	0.0097
MA0031.1	MA0031.1	0.0255
MA0035.2	MA0035.2	0.536
MA0038.1	MA0038.1	0.459
MA0039.2	MA0039.2	0.491
MA0040.1	MA0040.1	0.0345
MA0041.1	MA0041.1	0.269
MA0042.1	MA0042.1	0.246
MA0043.1	MA0043.1	1.50596e-10
MA0046.1	MA0046.1	0.138
MA0047.2	MA0047.2	0.208
MA0048.1	MA0048.1	0.617
MA0050.1	MA0050.1	1.541e-5
MA0051.1	MA0051.1	0.00687
MA0052.1	MA0052.1	0.02
MA0055.1	MA0055.1	0.549
MA0057.1	MA0057.1	0.46
MA0058.1	MA0058.1	0.393
MA0059.1	MA0059.1	0.742
MA0060.1	MA0060.1	0.0014
MA0061.1	MA0061.1	1.21563e-15
MA0062.2	MA0062.2	2.71372e-5
MA0065.2	MA0065.2	0.0394
MA0066.1	MA0066.1	0.0159
MA0067.1	MA0067.1	7.3536e-7
MA0068.1	MA0068.1	0.0833
MA0069.1	MA0069.1	0.666
MA0070.1	MA0070.1	0.0795
MA0071.1	MA0071.1	0.249
MA0072.1	MA0072.1	0.229
MA0073.1	MA0073.1	0.153
MA0074.1	MA0074.1	0.28
MA0076.1	MA0076.1	0.785
MA0077.1	MA0077.1	0.141
MA0078.1	MA0078.1	0.571
MA0079.2	MA0079.2	0.529
MA0080.2	MA0080.2	2.93618e-14
MA0081.1	MA0081.1	1.69924e-4
MA0083.1	MA0083.1	0.631
MA0084.1	MA0084.1	0.696
MA0087.1	MA0087.1	0.875
MA0088.1	MA0088.1	0.364
MA0090.1	MA0090.1	0.0508
MA0091.1	MA0091.1	0.856
MA0092.1	MA0092.1	0.562
MA0093.1	MA0093.1	0.717
MA0099.2	MA0099.2	1.22572e-35
MA0100.1	MA0100.1	0.938
MA0101.1	MA0101.1	2.2788e-14
MA0102.2	MA0102.2	4.65974e-8
MA0103.1	MA0103.1	0.0715
MA0104.2	MA0104.2	0.644
MA0105.1	MA0105.1	4.08438e-16
MA0106.1	MA0106.1	0.27
MA0107.1	MA0107.1	1.58853e-17
MA0108.2	MA0108.2	0.239
MA0111.1	MA0111.1	0.894
MA0112.2	MA0112.2	2.75002e-4
MA0113.1	MA0113.1	0.767
MA0114.1	MA0114.1	0.502
MA0115.1	MA0115.1	0.333
MA0116.1	MA0116.1	2.151e-4
MA0117.1	MA0117.1	0.00893
MA0119.1	MA0119.1	0.883
MA0122.1	MA0122.1	0.693
MA0124.1	MA0124.1	0.877
MA0125.1	MA0125.1	0.186
MA0131.1	MA0131.1	0.792
MA0135.1	MA0135.1	0.125
MA0136.1	MA0136.1	6.69435e-20
MA0137.2	MA0137.2	0.193
MA0138.2	MA0138.2	0.34
MA0139.1	MA0139.1	0.827
MA0140.1	MA0140.1	0.576
MA0141.1	MA0141.1	0.256
MA0142.1	MA0142.1	0.923
MA0143.1	MA0143.1	0.707
MA0144.1	MA0144.1	0.119
MA0145.1	MA0145.1	0.272
MA0146.1	MA0146.1	0.176
MA0147.1	MA0147.1	0.83
MA0148.1	MA0148.1	0.291
MA0149.1	MA0149.1	0.402
MA0150.1	MA0150.1	1.66485e-15
MA0152.1	MA0152.1	0.101
MA0153.1	MA0153.1	0.0985
MA0154.1	MA0154.1	6.00636e-4
MA0155.1	MA0155.1	0.803
MA0156.1	MA0156.1	2.99455e-17
MA0157.1	MA0157.1	0.112
MA0159.1	MA0159.1	0.116
MA0160.1	MA0160.1	0.0409
MA0162.1	MA0162.1	0.74
MA0163.1	MA0163.1	1.40831e-6
MA0164.1	MA0164.1	0.99
MA0258.1	MA0258.1	0.0141
MA0259.1	MA0259.1	0.604

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12546

Novel motif	Logo	P-value
1	1	0.421
10	10	0.0782
100	100	0.487
101	101	0.979
102	102	0.969
103	103	0.36
104	104	0.413
105	105	0.0693
106	106	9.56167e-4
107	107	0.719
108	108	0.598
109	109	0.178
11	11	0.389
110	110	0.364
111	111	0.313
112	112	0.397
113	113	0.419
114	114	0.132
115	115	0.152
116	116	0.517
117	117	0.0534
118	118	0.292
119	119	0.775
12	12	0.222
120	120	0.76
121	121	0.354
122	122	0.359
123	123	0.591
124	124	0.981
125	125	0.601
126	126	0.0931
127	127	0.473
128	128	0.0799
129	129	0.964
13	13	0.227
130	130	0.429
131	131	0.9
132	132	0.0376
133	133	0.632
134	134	0.997
135	135	0.388
136	136	0.962
137	137	0.00337
138	138	0.356
139	139	0.134
14	14	0.345
140	140	0.663
141	141	0.551
142	142	0.163
143	143	0.00501
144	144	0.698
145	145	0.706
146	146	0.988
147	147	0.421
148	148	0.127
149	149	0.895
15	15	0.142
150	150	0.543
151	151	0.223
152	152	0.157
153	153	0.882
154	154	0.893
155	155	0.392
156	156	0.621
157	157	0.86
158	158	0.0659
159	159	0.0874
16	16	0.778
160	160	0.872
161	161	0.822
162	162	0.174
163	163	0.476
164	164	0.187
165	165	0.297
166	166	0.575
167	167	0.651
168	168	0.171
169	169	0.0268
17	17	0.395
18	18	0.276
19	19	0.623
2	2	0.729
20	20	0.47
21	21	0.886
22	22	0.236
23	23	0.0989
24	24	0.522
25	25	0.191
26	26	0.267
27	27	0.988
28	28	0.385
29	29	0.163
3	3	0.386
30	30	0.52
31	31	0.81
32	32	0.259
33	33	0.214
34	34	0.598
35	35	0.193
36	36	0.0926
37	37	0.137
38	38	0.566
39	39	0.969
4	4	0.923
40	40	0.119
41	41	0.00173
42	42	0.46
43	43	0.0531
44	44	0.641
45	45	0.668
46	46	0.364
47	47	0.775
48	48	0.707
49	49	0.144
5	5	0.196
50	50	0.81
51	51	0.429
52	52	0.435
53	53	0.506
54	54	0.498
55	55	0.885
56	56	0.838
57	57	0.676
58	58	0.115
59	59	0.195
6	6	0.982
60	60	0.0706
61	61	0.425
62	62	0.0731
63	63	0.946
64	64	0.476
65	65	0.322
66	66	0.226
67	67	0.732
68	68	0.602
69	69	0.727
7	7	0.202
70	70	0.14
71	71	0.0615
72	72	0.276
73	73	0.153
74	74	0.211
75	75	0.188
76	76	0.413
77	77	0.968
78	78	0.563
79	79	0.912
8	8	0.865
80	80	0.0137
81	81	0.533
82	82	0.445
83	83	0.0215
84	84	0.569
85	85	0.0506
86	86	0.0484
87	87	0.313
88	88	0.711
89	89	0.876
9	9	0.195
90	90	0.235
91	91	0.46
92	92	0.469
93	93	0.178
94	94	0.0901
95	95	0.0656
96	96	0.576
97	97	0.922
98	98	0.214
99	99	0.00317

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12546

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000212 human basophil heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005439
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000094,CL:0000037,CL:0000566,CL:0000767,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX008045;DRR008917;DRZ000342;DRZ001727;DRZ011692;DRZ013077
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000013,FF:0000212
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.69!488.56!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.55!357.17!SPI1;;chr19:45971246..45971265,+!p1@FOSB!2.48!5231.35!FOSB;;chr3:128212033..128212051,-!p1@GATA2!2.30!197.86!GATA2;;chr12:54778471..54778528,-!p1@ZNF385A!2.23!168.75!ZNF385A;;chr14:75745523..75745537,+!p1@FOS!2.16!15834.49!FOS;;chr16:85932760..85932775,+!p1@IRF8!2.14!136.89!IRF8;;chr19:16435625..16435682,+!p1@KLF2!2.00!2944.33!KLF2;;chr2:157189180..157189290,-!p1@NR4A2!2.00!487.77!NR4A2;;chr11:47400062..47400077,-!p2@SPI1!2.00!99.52!SPI1;;chr10:35484053..35484076,+!p1@CREM!1.98!226.58!CREM;;chr20:39317868..39317884,-!p1@MAFB!1.93!927.55!MAFB;;chr9:110252035..110252057,-!p1@KLF4!1.88!1109.68!KLF4;;chr1:25256756..25256774,-!p1@RUNX3!1.88!137.68!RUNX3;;chr7:50344289..50344323,+!p1@IKZF1!1.87!73.17!IKZF1;;chr9:102584262..102584276,+!p1@NR4A3!1.82!139.64!NR4A3;;chr11:47399947..47399961,-!p3@SPI1!1.77!57.43!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.71!267.09!MXD1;;chr9:102584241..102584261,+!p4@NR4A3!1.69!73.17!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!47.20!ZNF385A;;chr2:192015701..192015743,-!p1@STAT4!1.66!60.97!STAT4;;chr9:102584128..102584144,+!p3@NR4A3!1.64!79.46!NR4A3;;chr17:45810594..45810608,+!p1@TBX21!1.64!42.88!TBX21;;chr3:39195075..39195088,-!p1@CSRNP1!1.63!246.64!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.62!100.31!NFKBIA;;chr3:39195139..39195150,-!p3@CSRNP1!1.62!51.14!CSRNP1;;chr19:54041669..54041697,+!p2@ZNF331!1.61!39.34!ZNF331;;chr2:145271342..145271377,-!p5@ZEB2!1.59!37.76!ZEB2;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.19!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.57!36.19!SPI1;;chrX:106960180..106960197,-!p2@TSC22D3!1.54!123.12!TSC22D3;;chr14:35873947..35873965,-!p1@NFKBIA!1.52!1915.29!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.52!414.61!ZEB2;;chr10:3827371..3827386,-!p2@KLF6!1.51!252.15!KLF6;;chr22:38597987..38598021,+!p2@MAFF!1.51!185.67!MAFF;;chr4:83822199..83822239,+!p2@THAP9!1.51!36.98!THAP9;;chr11:47399996..47400014,-!p4@SPI1!1.51!31.47!SPI1;;chrX:106960285..106960299,-!p1@TSC22D3!1.49!764.31!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.49!40.12!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.49!34.62!RARA;;chr10:35484090..35484104,+!p6@CREM!1.49!29.90!CREM;;chr7:50343634..50343717,+!p2@IKZF1!1.46!27.54!IKZF1;;chr14:75746722..75746777,+!p2@FOS!1.45!34.62!FOS;;chr2:28615716..28615733,+!p1@FOSL2!1.44!1207.23!FOSL2;;chr9:3525727..3525828,-!p2@RFX3!1.44!65.69!RFX3;;chr19:12902289..12902307,+!p1@JUNB!1.43!5713.22!JUNB;;chr5:131826457..131826514,-!p1@IRF1!1.43!973.18!IRF1;;chrX:106960221..106960236,-!p3@TSC22D3!1.42!68.45!TSC22D3;;chr19:45971060..45971122,+!p3@FOSB!1.42!25.18!FOSB;;chr19:54058073..54058088,+!p1@ZNF331!1.40!24.39!ZNF331;;chr12:57914286..57914304,-!p1@DDIT3!1.39!811.12!DDIT3;;chr12:72056773..72056796,+!p3@THAP2!1.39!30.29!THAP2;;chr9:117150254..117150271,-!p1@AKNA!1.38!61.36!AKNA;;chr1:151030536..151030549,+!p8@MLLT11!1.38!23.21!MLLT11;;chr1:156470515..156470542,-!p2@MEF2D!1.35!107.78!MEF2D;;chr19:45252008..45252024,+!p2@BCL3!1.35!68.45!BCL3;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.76!NFKB2;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.18!CEBPA;;chr6:391743..391759,+!p1@IRF4!1.33!20.45!IRF4;;chrX:129244454..129244488,-!p1@ELF4!1.32!138.46!ELF4;;chr5:176735063..176735088,-!p2@MXD3!1.32!19.67!MXD3;;chr10:3827389..3827408,-!p1@KLF6!1.31!1431.45!KLF6;;chr7:149470641..149470694,-!p1@ZNF467!1.31!86.15!ZNF467;;chr9:110250697..110250738,-!p2@KLF4!1.31!22.82!KLF4;;chr2:70142189..70142223,+!p2@MXD1!1.30!131.78!MXD1;;chr1:59249688..59249703,-!p3@JUN!1.30!110.14!JUN;;chr2:208394817..208394834,+!p3@CREB1!1.30!75.53!CREB1;;chr17:38498402..38498445,+!p3@RARA!1.30!66.48!RARA;;chr12:54694758..54694805,-!p1@NFE2!1.30!22.82!NFE2;;chr12:72056749..72056767,+!p6@THAP2!1.30!21.24!THAP2;;chr1:25256439..25256476,-!p3@RUNX3!1.30!18.88!RUNX3;;chr2:68592394..68592405,+!p2@PLEK!1.30!18.88!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.29!483.84!ATF3;;chr2:61108695..61108753,+!p1@REL!1.29!124.30!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.29!111.32!CSRNP1;;chr17:38498594..38498661,+!p2@RARA!1.29!60.58!RARA;;chr10:35416142..35416169,+!p3@CREM!1.29!48.38!CREM;;chr20:48807456..48807475,+!p3@CEBPB!1.29!35.40!CEBPB;;chr2:61108878..61108891,+!p5@REL!1.29!18.49!REL;;chr7:27183114..27183138,-!p3@HOXA5!1.29!18.49!HOXA5;;chr5:142782823..142782854,-!p3@NR3C1!1.28!25.57!NR3C1;;chr2:192015677..192015691,-!p3@STAT4!1.28!18.09!STAT4;;chr14:35872453..35872485,-!p2@NFKBIA!1.27!43.27!NFKBIA;;chr21:36260295..36260310,-!p3@RUNX1!1.27!28.32!RUNX1;;chr19:47616992..47617011,-!p4@ZC3H4!1.26!36.19!ZC3H4;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.31!OLIG1;;chr19:18392422..18392440,-!p1@JUND!1.25!2227.23!JUND;;chr9:94186101..94186122,-!p1@NFIL3!1.25!226.97!NFIL3;;chr6:106534192..106534224,+!p1@PRDM1!1.25!46.81!PRDM1;;chr12:52445218..52445237,+!p1@NR4A1!1.24!204.55!NR4A1;;chr11:128563948..128564003,+!p1@FLI1!1.24!192.75!FLI1;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.84!EPAS1;;chr19:13213662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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000767;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:12241-129G9
 |is_a=EFO:0002091;;FF:0000212
 |is_obsolete=
+|library_id=CNhs12546
+|library_id_phase_based=2:CNhs12546
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12241
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12241
 |name=Basophils, donor1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12546,LSID920,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=3H100-93-5
@@ Line 58: / Line 79: @@
 |rna_weight_ug=1.01616
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+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=RUNX1..3:4.21575783649;ATF5_CREB3:3.69779579453;ETS1,2:3.65670332379;PAX2:3.61852322847;RORA:3.53943921668;SPIB:3.42978654309;NFKB1_REL_RELA:3.32387274331;CREB1:3.23673041271;NFIL3:3.23431794048;SPI1:3.2233103805;ATF4:3.13273070231;NFE2:3.08465508529;BACH2:3.06675242243;FOS_FOS{B,L1}_JUN{B,D}:2.86947807506;FOSL2:2.81454758208;EP300:2.80605574832;JUN:2.74497339738;FOX{F1,F2,J1}:2.69861036724;NANOG{mouse}:2.66378065212;NFE2L2:2.61236583708;ELF1,2,4:2.5047842114;RFX2..5_RFXANK_RFXAP:2.47060872985;FOX{D1,D2}:2.38601850077;CEBPA,B_DDIT3:2.36270839118;FOXO1,3,4:2.28351673006;HLF:2.26383202635;DMAP1_NCOR{1,2}_SMARC:2.23588721291;TGIF1:2.21914752344;FOXN1:2.16368898353;RFX1:2.09917611368;NFE2L1:1.89027283944;HMX1:1.86134851992;ATF6:1.6882144969;IRF1,2:1.6051585742;STAT2,4,6:1.58701527035;NFATC1..3:1.49739081121;BPTF:1.47897772528;SREBF1,2:1.45848823597;T:1.42352079;MAFB:1.39436833614;IRF7:1.3132189873;PAX3,7:1.2972273935;ATF2:1.24221185095;PPARG:1.14062657491;XBP1:1.01401168859;NKX2-1,4:0.983954111264;RXRA_VDR{dimer}:0.969602375297;FOXP3:0.891801889218;HBP1_HMGB_SSRP1_UBTF:0.88854976699;HIF1A:0.866172872035;TBX4,5:0.820196413646;SMAD1..7,9:0.742873460369;FOX{I1,J2}:0.736844345354;TLX2:0.733636248265;GLI1..3:0.707543457167;GATA6:0.679921784536;RBPJ:0.673413613135;HMGA1,2:0.662972341951;NANOG:0.620461213958;ESRRA:0.511785229587;HES1:0.411223846676;TFAP4:0.30163276289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.27027724736;SRF:0.219936805208;MYB:0.189171460922;STAT5{A,B}:0.180612507564;TFCP2:0.134327159138;SOX2:0.128457781853;NR5A1,2:0.109386415455;BREu{core}:0.0711522688619;MEF2{A,B,C,D}:-0.00719524904109;ESR1:-0.0375248167593;PAX8:-0.0574841803767;EN1,2:-0.073587608417;DBP:-0.103838766024;NR1H4:-0.131776315182;HSF1,2:-0.134462418884;PDX1:-0.137109332718;HOX{A5,B5}:-0.153404368318;POU5F1:-0.178542263805;FOXA2:-0.22766449854;TBP:-0.25649020656;AHR_ARNT_ARNT2:-0.308539711621;MYFfamily:-0.34104911476;PAX6:-0.381570305853;EGR1..3:-0.388946176302;ALX4:-0.39801663325;ZNF148:-0.410733738371;NHLH1,2:-0.434928721703;POU2F1..3:-0.443701877982;GATA4:-0.486839463553;HOXA9_MEIS1:-0.489573266033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.511497543804;ZNF238:-0.523570749281;TAL1_TCF{3,4,12}:-0.527808328056;NFIX:-0.577625554633;STAT1,3:-0.606355615702;PBX1:-0.612724871877;PATZ1:-0.61543031389;RXR{A,B,G}:-0.621062863875;CRX:-0.656952940324;VSX1,2:-0.662917090018;NFY{A,B,C}:-0.686176767883;MTE{core}:-0.721400109318;OCT4_SOX2{dimer}:-0.725289067037;MYOD1:-0.733211299058;LEF1_TCF7_TCF7L1,2:-0.736360986303;ELK1,4_GABP{A,B1}:-0.748697685529;PAX4:-0.770500442491;SPZ1:-0.797998448566;NR6A1:-0.81830211335;HNF4A_NR2F1,2:-0.832910867432;PAX5:-0.858677607487;MZF1:-0.868271499583;SP1:-0.909001904443;SOX5:-0.935907484808;FOXL1:-0.950459335898;ZEB1:-0.968528843233;PRRX1,2:-0.979977372009;TFAP2{A,C}:-0.981520875432;TFAP2B:-1.04359717013;SOX{8,9,10}:-1.04646541021;HNF1A:-1.0783660168;MED-1{core}:-1.08570679811;E2F1..5:-1.11846299555;TFDP1:-1.12596802842;REST:-1.14193710794;GCM1,2:-1.1566216709;IKZF1:-1.15971679684;ZFP161:-1.16827515115;SNAI1..3:-1.19110611437;RREB1:-1.21386551408;CDX1,2,4:-1.24634746803;PRDM1:-1.25953113324;MAZ:-1.29872663412;MTF1:-1.31818290064;EBF1:-1.32150076899;ZNF423:-1.34994250641;FOXD3:-1.38168884591;NR3C1:-1.38321574103;GZF1:-1.39040120629;IKZF2:-1.40103701661;HOX{A6,A7,B6,B7}:-1.43535826627;TP53:-1.45296038717;AR:-1.47023288814;FOXP1:-1.48248095731;LMO2:-1.52159650383;FOXM1:-1.53123860738;ZIC1..3:-1.54264709093;ZBTB6:-1.55543282261;GTF2I:-1.59418974775;TLX1..3_NFIC{dimer}:-1.60748834712;ZNF384:-1.62478623668;CUX2:-1.67203470095;XCPE1{core}:-1.68135066271;GTF2A1,2:-1.73447295122;PAX1,9:-1.73811066265;MYBL2:-1.74989044641;POU6F1:-1.76720703836;NKX2-2,8:-1.77785706088;HIC1:-1.78004303523;bHLH_family:-1.833615313;NKX2-3_NKX2-5:-1.85609861311;NKX3-1:-1.86686353938;TEAD1:-1.94911984373;KLF4:-1.9537093637;GFI1:-2.03863269678;FOXQ1:-2.0410707151;LHX3,4:-2.05432271145;ADNP_IRX_SIX_ZHX:-2.07519816418;HAND1,2:-2.20053751181;NRF1:-2.25522984359;PITX1..3:-2.30283429918;ZBTB16:-2.36000581482;GFI1B:-2.36009960536;POU1F1:-2.38906063519;ALX1:-2.40432990845;SOX17:-2.42560195282;NKX6-1,2:-2.42906304529;YY1:-2.4968046654;ZNF143:-2.56385147039;EVI1:-2.57491664199;CDC5L:-2.80297619677;NKX3-2:-2.87453752984;UFEwm:-2.8962959827;TOPORS:-2.93971331238;ARID5B:-2.95935256034;HOX{A4,D4}:-3.08809249976;AIRE:-3.15105574058;ONECUT1,2:-3.15462478093;TEF:-3.29397763921;POU3F1..4:-3.79328052392
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12241-129G9;search_select_hide=table117:FF:12241-129G9
 }}

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FF:12241-129G9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0