FF:12241-129G9: Difference between revisions

Latest revision as of 18:36, 4 June 2020

Name:	Basophils, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12546
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	basophil
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-93-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005439

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12546		CAGE		DRX008045		DRR008917

Accession ID Hg19

Library id		BAM		CTSS
CNhs12546		DRZ000342		DRZ001727

Accession ID Hg38

Library id		BAM		CTSS
CNhs12546		DRZ011692		DRZ013077

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.144
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.197
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.347
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0986
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.472
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.252
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.144
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.713
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	1.169
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.252
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.723
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.144
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.297
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.472
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.657
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.411
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.248
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.252
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.144
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0869
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.9
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.144
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.694
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.693
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.744
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.618
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.363
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.144
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.129
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.897
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.518
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.763
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.657
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.777
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.851
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.71
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.338
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.681
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.411
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.144
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.657
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.411
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.928
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.411
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.252
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12546

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.04749e-16
MA0003.1	MA0003.1	0.0792
MA0004.1	MA0004.1	0.659
MA0006.1	MA0006.1	0.94
MA0007.1	MA0007.1	0.68
MA0009.1	MA0009.1	0.289
MA0014.1	MA0014.1	0.623
MA0017.1	MA0017.1	0.24
MA0018.2	MA0018.2	6.63923e-5
MA0019.1	MA0019.1	0.563
MA0024.1	MA0024.1	0.0207
MA0025.1	MA0025.1	6.65797e-5
MA0027.1	MA0027.1	0.764
MA0028.1	MA0028.1	0.94
MA0029.1	MA0029.1	0.829
MA0030.1	MA0030.1	0.0097
MA0031.1	MA0031.1	0.0255
MA0035.2	MA0035.2	0.536
MA0038.1	MA0038.1	0.459
MA0039.2	MA0039.2	0.491
MA0040.1	MA0040.1	0.0345
MA0041.1	MA0041.1	0.269
MA0042.1	MA0042.1	0.246
MA0043.1	MA0043.1	1.50596e-10
MA0046.1	MA0046.1	0.138
MA0047.2	MA0047.2	0.208
MA0048.1	MA0048.1	0.617
MA0050.1	MA0050.1	1.541e-5
MA0051.1	MA0051.1	0.00687
MA0052.1	MA0052.1	0.02
MA0055.1	MA0055.1	0.549
MA0057.1	MA0057.1	0.46
MA0058.1	MA0058.1	0.393
MA0059.1	MA0059.1	0.742
MA0060.1	MA0060.1	0.0014
MA0061.1	MA0061.1	1.21563e-15
MA0062.2	MA0062.2	2.71372e-5
MA0065.2	MA0065.2	0.0394
MA0066.1	MA0066.1	0.0159
MA0067.1	MA0067.1	7.3536e-7
MA0068.1	MA0068.1	0.0833
MA0069.1	MA0069.1	0.666
MA0070.1	MA0070.1	0.0795
MA0071.1	MA0071.1	0.249
MA0072.1	MA0072.1	0.229
MA0073.1	MA0073.1	0.153
MA0074.1	MA0074.1	0.28
MA0076.1	MA0076.1	0.785
MA0077.1	MA0077.1	0.141
MA0078.1	MA0078.1	0.571
MA0079.2	MA0079.2	0.529
MA0080.2	MA0080.2	2.93618e-14
MA0081.1	MA0081.1	1.69924e-4
MA0083.1	MA0083.1	0.631
MA0084.1	MA0084.1	0.696
MA0087.1	MA0087.1	0.875
MA0088.1	MA0088.1	0.364
MA0090.1	MA0090.1	0.0508
MA0091.1	MA0091.1	0.856
MA0092.1	MA0092.1	0.562
MA0093.1	MA0093.1	0.717
MA0099.2	MA0099.2	1.22572e-35
MA0100.1	MA0100.1	0.938
MA0101.1	MA0101.1	2.2788e-14
MA0102.2	MA0102.2	4.65974e-8
MA0103.1	MA0103.1	0.0715
MA0104.2	MA0104.2	0.644
MA0105.1	MA0105.1	4.08438e-16
MA0106.1	MA0106.1	0.27
MA0107.1	MA0107.1	1.58853e-17
MA0108.2	MA0108.2	0.239
MA0111.1	MA0111.1	0.894
MA0112.2	MA0112.2	2.75002e-4
MA0113.1	MA0113.1	0.767
MA0114.1	MA0114.1	0.502
MA0115.1	MA0115.1	0.333
MA0116.1	MA0116.1	2.151e-4
MA0117.1	MA0117.1	0.00893
MA0119.1	MA0119.1	0.883
MA0122.1	MA0122.1	0.693
MA0124.1	MA0124.1	0.877
MA0125.1	MA0125.1	0.186
MA0131.1	MA0131.1	0.792
MA0135.1	MA0135.1	0.125
MA0136.1	MA0136.1	6.69435e-20
MA0137.2	MA0137.2	0.193
MA0138.2	MA0138.2	0.34
MA0139.1	MA0139.1	0.827
MA0140.1	MA0140.1	0.576
MA0141.1	MA0141.1	0.256
MA0142.1	MA0142.1	0.923
MA0143.1	MA0143.1	0.707
MA0144.1	MA0144.1	0.119
MA0145.1	MA0145.1	0.272
MA0146.1	MA0146.1	0.176
MA0147.1	MA0147.1	0.83
MA0148.1	MA0148.1	0.291
MA0149.1	MA0149.1	0.402
MA0150.1	MA0150.1	1.66485e-15
MA0152.1	MA0152.1	0.101
MA0153.1	MA0153.1	0.0985
MA0154.1	MA0154.1	6.00636e-4
MA0155.1	MA0155.1	0.803
MA0156.1	MA0156.1	2.99455e-17
MA0157.1	MA0157.1	0.112
MA0159.1	MA0159.1	0.116
MA0160.1	MA0160.1	0.0409
MA0162.1	MA0162.1	0.74
MA0163.1	MA0163.1	1.40831e-6
MA0164.1	MA0164.1	0.99
MA0258.1	MA0258.1	0.0141
MA0259.1	MA0259.1	0.604

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12546

Novel motif	Logo	P-value
1	1	0.421
10	10	0.0782
100	100	0.487
101	101	0.979
102	102	0.969
103	103	0.36
104	104	0.413
105	105	0.0693
106	106	9.56167e-4
107	107	0.719
108	108	0.598
109	109	0.178
11	11	0.389
110	110	0.364
111	111	0.313
112	112	0.397
113	113	0.419
114	114	0.132
115	115	0.152
116	116	0.517
117	117	0.0534
118	118	0.292
119	119	0.775
12	12	0.222
120	120	0.76
121	121	0.354
122	122	0.359
123	123	0.591
124	124	0.981
125	125	0.601
126	126	0.0931
127	127	0.473
128	128	0.0799
129	129	0.964
13	13	0.227
130	130	0.429
131	131	0.9
132	132	0.0376
133	133	0.632
134	134	0.997
135	135	0.388
136	136	0.962
137	137	0.00337
138	138	0.356
139	139	0.134
14	14	0.345
140	140	0.663
141	141	0.551
142	142	0.163
143	143	0.00501
144	144	0.698
145	145	0.706
146	146	0.988
147	147	0.421
148	148	0.127
149	149	0.895
15	15	0.142
150	150	0.543
151	151	0.223
152	152	0.157
153	153	0.882
154	154	0.893
155	155	0.392
156	156	0.621
157	157	0.86
158	158	0.0659
159	159	0.0874
16	16	0.778
160	160	0.872
161	161	0.822
162	162	0.174
163	163	0.476
164	164	0.187
165	165	0.297
166	166	0.575
167	167	0.651
168	168	0.171
169	169	0.0268
17	17	0.395
18	18	0.276
19	19	0.623
2	2	0.729
20	20	0.47
21	21	0.886
22	22	0.236
23	23	0.0989
24	24	0.522
25	25	0.191
26	26	0.267
27	27	0.988
28	28	0.385
29	29	0.163
3	3	0.386
30	30	0.52
31	31	0.81
32	32	0.259
33	33	0.214
34	34	0.598
35	35	0.193
36	36	0.0926
37	37	0.137
38	38	0.566
39	39	0.969
4	4	0.923
40	40	0.119
41	41	0.00173
42	42	0.46
43	43	0.0531
44	44	0.641
45	45	0.668
46	46	0.364
47	47	0.775
48	48	0.707
49	49	0.144
5	5	0.196
50	50	0.81
51	51	0.429
52	52	0.435
53	53	0.506
54	54	0.498
55	55	0.885
56	56	0.838
57	57	0.676
58	58	0.115
59	59	0.195
6	6	0.982
60	60	0.0706
61	61	0.425
62	62	0.0731
63	63	0.946
64	64	0.476
65	65	0.322
66	66	0.226
67	67	0.732
68	68	0.602
69	69	0.727
7	7	0.202
70	70	0.14
71	71	0.0615
72	72	0.276
73	73	0.153
74	74	0.211
75	75	0.188
76	76	0.413
77	77	0.968
78	78	0.563
79	79	0.912
8	8	0.865
80	80	0.0137
81	81	0.533
82	82	0.445
83	83	0.0215
84	84	0.569
85	85	0.0506
86	86	0.0484
87	87	0.313
88	88	0.711
89	89	0.876
9	9	0.195
90	90	0.235
91	91	0.46
92	92	0.469
93	93	0.178
94	94	0.0901
95	95	0.0656
96	96	0.576
97	97	0.922
98	98	0.214
99	99	0.00317

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12546

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000212 human basophil heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000081 (blood cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000094 (granulocyte)
0000767 (basophil)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000013 (human basophil sample)
0000212 (human basophil heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005439
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000255,CL:0000094,CL:0000037,CL:0000566,CL:0000767,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX008045;DRR008917;DRZ000342;DRZ001727;DRZ011692;DRZ013077
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000081,CL:0000219,CL:0000738,CL:0000255,CL:0000094,CL:0000767
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000013,FF:0000212
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.69!488.56!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.55!357.17!SPI1;;chr19:45971246..45971265,+!p1@FOSB!2.48!5231.35!FOSB;;chr3:128212033..128212051,-!p1@GATA2!2.30!197.86!GATA2;;chr12:54778471..54778528,-!p1@ZNF385A!2.23!168.75!ZNF385A;;chr14:75745523..75745537,+!p1@FOS!2.16!15834.49!FOS;;chr16:85932760..85932775,+!p1@IRF8!2.14!136.89!IRF8;;chr19:16435625..16435682,+!p1@KLF2!2.00!2944.33!KLF2;;chr2:157189180..157189290,-!p1@NR4A2!2.00!487.77!NR4A2;;chr11:47400062..47400077,-!p2@SPI1!2.00!99.52!SPI1;;chr10:35484053..35484076,+!p1@CREM!1.98!226.58!CREM;;chr20:39317868..39317884,-!p1@MAFB!1.93!927.55!MAFB;;chr9:110252035..110252057,-!p1@KLF4!1.88!1109.68!KLF4;;chr1:25256756..25256774,-!p1@RUNX3!1.88!137.68!RUNX3;;chr7:50344289..50344323,+!p1@IKZF1!1.87!73.17!IKZF1;;chr9:102584262..102584276,+!p1@NR4A3!1.82!139.64!NR4A3;;chr11:47399947..47399961,-!p3@SPI1!1.77!57.43!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.71!267.09!MXD1;;chr9:102584241..102584261,+!p4@NR4A3!1.69!73.17!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!47.20!ZNF385A;;chr2:192015701..192015743,-!p1@STAT4!1.66!60.97!STAT4;;chr9:102584128..102584144,+!p3@NR4A3!1.64!79.46!NR4A3;;chr17:45810594..45810608,+!p1@TBX21!1.64!42.88!TBX21;;chr3:39195075..39195088,-!p1@CSRNP1!1.63!246.64!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.62!100.31!NFKBIA;;chr3:39195139..39195150,-!p3@CSRNP1!1.62!51.14!CSRNP1;;chr19:54041669..54041697,+!p2@ZNF331!1.61!39.34!ZNF331;;chr2:145271342..145271377,-!p5@ZEB2!1.59!37.76!ZEB2;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.19!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.57!36.19!SPI1;;chrX:106960180..106960197,-!p2@TSC22D3!1.54!123.12!TSC22D3;;chr14:35873947..35873965,-!p1@NFKBIA!1.52!1915.29!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.52!414.61!ZEB2;;chr10:3827371..3827386,-!p2@KLF6!1.51!252.15!KLF6;;chr22:38597987..38598021,+!p2@MAFF!1.51!185.67!MAFF;;chr4:83822199..83822239,+!p2@THAP9!1.51!36.98!THAP9;;chr11:47399996..47400014,-!p4@SPI1!1.51!31.47!SPI1;;chrX:106960285..106960299,-!p1@TSC22D3!1.49!764.31!TSC22D3;;chr12:72056800..72056834,+!p1@THAP2!1.49!40.12!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.49!34.62!RARA;;chr10:35484090..35484104,+!p6@CREM!1.49!29.90!CREM;;chr7:50343634..50343717,+!p2@IKZF1!1.46!27.54!IKZF1;;chr14:75746722..75746777,+!p2@FOS!1.45!34.62!FOS;;chr2:28615716..28615733,+!p1@FOSL2!1.44!1207.23!FOSL2;;chr9:3525727..3525828,-!p2@RFX3!1.44!65.69!RFX3;;chr19:12902289..12902307,+!p1@JUNB!1.43!5713.22!JUNB;;chr5:131826457..131826514,-!p1@IRF1!1.43!973.18!IRF1;;chrX:106960221..106960236,-!p3@TSC22D3!1.42!68.45!TSC22D3;;chr19:45971060..45971122,+!p3@FOSB!1.42!25.18!FOSB;;chr19:54058073..54058088,+!p1@ZNF331!1.40!24.39!ZNF331;;chr12:57914286..57914304,-!p1@DDIT3!1.39!811.12!DDIT3;;chr12:72056773..72056796,+!p3@THAP2!1.39!30.29!THAP2;;chr9:117150254..117150271,-!p1@AKNA!1.38!61.36!AKNA;;chr1:151030536..151030549,+!p8@MLLT11!1.38!23.21!MLLT11;;chr1:156470515..156470542,-!p2@MEF2D!1.35!107.78!MEF2D;;chr19:45252008..45252024,+!p2@BCL3!1.35!68.45!BCL3;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.76!NFKB2;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.18!CEBPA;;chr6:391743..391759,+!p1@IRF4!1.33!20.45!IRF4;;chrX:129244454..129244488,-!p1@ELF4!1.32!138.46!ELF4;;chr5:176735063..176735088,-!p2@MXD3!1.32!19.67!MXD3;;chr10:3827389..3827408,-!p1@KLF6!1.31!1431.45!KLF6;;chr7:149470641..149470694,-!p1@ZNF467!1.31!86.15!ZNF467;;chr9:110250697..110250738,-!p2@KLF4!1.31!22.82!KLF4;;chr2:70142189..70142223,+!p2@MXD1!1.30!131.78!MXD1;;chr1:59249688..59249703,-!p3@JUN!1.30!110.14!JUN;;chr2:208394817..208394834,+!p3@CREB1!1.30!75.53!CREB1;;chr17:38498402..38498445,+!p3@RARA!1.30!66.48!RARA;;chr12:54694758..54694805,-!p1@NFE2!1.30!22.82!NFE2;;chr12:72056749..72056767,+!p6@THAP2!1.30!21.24!THAP2;;chr1:25256439..25256476,-!p3@RUNX3!1.30!18.88!RUNX3;;chr2:68592394..68592405,+!p2@PLEK!1.30!18.88!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.29!483.84!ATF3;;chr2:61108695..61108753,+!p1@REL!1.29!124.30!REL;;chr3:39195037..39195069,-!p2@CSRNP1!1.29!111.32!CSRNP1;;chr17:38498594..38498661,+!p2@RARA!1.29!60.58!RARA;;chr10:35416142..35416169,+!p3@CREM!1.29!48.38!CREM;;chr20:48807456..48807475,+!p3@CEBPB!1.29!35.40!CEBPB;;chr2:61108878..61108891,+!p5@REL!1.29!18.49!REL;;chr7:27183114..27183138,-!p3@HOXA5!1.29!18.49!HOXA5;;chr5:142782823..142782854,-!p3@NR3C1!1.28!25.57!NR3C1;;chr2:192015677..192015691,-!p3@STAT4!1.28!18.09!STAT4;;chr14:35872453..35872485,-!p2@NFKBIA!1.27!43.27!NFKBIA;;chr21:36260295..36260310,-!p3@RUNX1!1.27!28.32!RUNX1;;chr19:47616992..47617011,-!p4@ZC3H4!1.26!36.19!ZC3H4;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.31!OLIG1;;chr19:18392422..18392440,-!p1@JUND!1.25!2227.23!JUND;;chr9:94186101..94186122,-!p1@NFIL3!1.25!226.97!NFIL3;;chr6:106534192..106534224,+!p1@PRDM1!1.25!46.81!PRDM1;;chr12:52445218..52445237,+!p1@NR4A1!1.24!204.55!NR4A1;;chr11:128563948..128564003,+!p1@FLI1!1.24!192.75!FLI1;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.84!EPAS1;;chr19:13213662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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000094;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000767;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Basophils%252c%2520donor1.CNhs12546.12241-129G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:12241-129G9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000212
+|is_a=EFO:0002091;;FF:0000212
+|is_obsolete=
+|library_id=CNhs12546
+|library_id_phase_based=2:CNhs12546
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12241
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12241
 |name=Basophils, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12546,LSID920,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=3H100-93-5
@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.01616
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.44835038192193e-241!GO:0043227;membrane-bound organelle;3.62229799372735e-142!GO:0043231;intracellular membrane-bound organelle;6.96617379090842e-142!GO:0005737;cytoplasm;1.4542989303097e-131!GO:0043226;organelle;2.70714389605294e-130!GO:0043229;intracellular organelle;1.60632546543103e-129!GO:0044444;cytoplasmic part;2.18330147549095e-84!GO:0044422;organelle part;3.15766590450749e-82!GO:0044446;intracellular organelle part;1.22913787839683e-80!GO:0044237;cellular metabolic process;1.42371502862519e-74!GO:0043170;macromolecule metabolic process;8.73727904546341e-73!GO:0005515;protein binding;2.07113501113784e-72!GO:0044238;primary metabolic process;5.73576293877798e-72!GO:0032991;macromolecular complex;5.29352298709812e-68!GO:0005634;nucleus;4.76280231335628e-66!GO:0003723;RNA binding;3.96056061784683e-56!GO:0030529;ribonucleoprotein complex;4.60937085016455e-56!GO:0044428;nuclear part;1.43660425216398e-53!GO:0019538;protein metabolic process;3.5117064581151e-48!GO:0043233;organelle lumen;3.07418240654233e-46!GO:0031974;membrane-enclosed lumen;3.07418240654233e-46!GO:0044267;cellular protein metabolic process;4.22192547996286e-45!GO:0044260;cellular macromolecule metabolic process;7.60739936080294e-45!GO:0043283;biopolymer metabolic process;3.80235053538662e-44!GO:0033036;macromolecule localization;1.23016806165428e-41!GO:0006412;translation;5.74970518169919e-41!GO:0015031;protein transport;5.88564050748424e-41!GO:0045184;establishment of protein localization;1.60908601859902e-40!GO:0008104;protein localization;5.24768781275572e-39!GO:0010467;gene expression;2.00643820659843e-37!GO:0043234;protein complex;6.68937411686657e-35!GO:0031981;nuclear lumen;1.06447854409202e-34!GO:0005739;mitochondrion;1.96912902519619e-34!GO:0031090;organelle membrane;1.14694517255904e-33!GO:0005829;cytosol;2.69619762977993e-33!GO:0016071;mRNA metabolic process;3.55793223952907e-33!GO:0006396;RNA processing;1.31770298410856e-32!GO:0006915;apoptosis;5.6019806638461e-32!GO:0012501;programmed cell death;7.19762518221675e-32!GO:0008219;cell death;5.69419124794161e-31!GO:0016265;death;5.69419124794161e-31!GO:0009059;macromolecule biosynthetic process;7.91428619443823e-31!GO:0005840;ribosome;3.65541300577149e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.65541300577149e-30!GO:0016043;cellular component organization and biogenesis;1.26164877456224e-29!GO:0008380;RNA splicing;1.81051207569009e-29!GO:0046907;intracellular transport;8.14271814061695e-29!GO:0031967;organelle envelope;1.46674160334443e-28!GO:0006397;mRNA processing;2.89044738644753e-28!GO:0031975;envelope;2.96027143865371e-28!GO:0006886;intracellular protein transport;6.77384881414028e-28!GO:0003735;structural constituent of ribosome;5.48402471770004e-27!GO:0044249;cellular biosynthetic process;6.11777573839391e-27!GO:0009058;biosynthetic process;1.19789543969813e-26!GO:0065003;macromolecular complex assembly;1.04785245884229e-25!GO:0044429;mitochondrial part;1.60462800372829e-25!GO:0033279;ribosomal subunit;3.20977195192886e-25!GO:0005681;spliceosome;3.34487801318562e-23!GO:0005654;nucleoplasm;3.74682746456945e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.74403355249413e-23!GO:0051649;establishment of cellular localization;1.89294137118117e-22!GO:0051641;cellular localization;4.24871040906221e-22!GO:0008134;transcription factor binding;1.15460914507057e-21!GO:0022607;cellular component assembly;1.26062908432335e-21!GO:0042981;regulation of apoptosis;3.74209838446678e-21!GO:0044445;cytosolic part;8.08914121906184e-21!GO:0043067;regulation of programmed cell death;8.61925066320094e-21!GO:0000166;nucleotide binding;4.9951915167212e-20!GO:0003676;nucleic acid binding;7.17381911902665e-20!GO:0043412;biopolymer modification;9.20069877616569e-20!GO:0044451;nucleoplasm part;1.25501555096328e-19!GO:0005740;mitochondrial envelope;5.07092993706726e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.00975371350304e-18!GO:0031966;mitochondrial membrane;1.42950775247027e-18!GO:0019866;organelle inner membrane;1.99841259078404e-18!GO:0006512;ubiquitin cycle;2.88064172000407e-18!GO:0006464;protein modification process;3.05713067224699e-18!GO:0002376;immune system process;7.34018459964126e-18!GO:0044265;cellular macromolecule catabolic process;1.81931876123288e-17!GO:0016070;RNA metabolic process;2.14873295162546e-17!GO:0043687;post-translational protein modification;3.89677747946375e-17!GO:0006259;DNA metabolic process;4.4373249056927e-17!GO:0006119;oxidative phosphorylation;5.02336617700861e-17!GO:0006996;organelle organization and biogenesis;1.65205504796032e-16!GO:0007243;protein kinase cascade;2.81379775561471e-16!GO:0050794;regulation of cellular process;4.12356362697415e-16!GO:0019941;modification-dependent protein catabolic process;5.60716711986142e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.60716711986142e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;5.75044857451897e-16!GO:0048523;negative regulation of cellular process;6.23033113777325e-16!GO:0005743;mitochondrial inner membrane;6.3180256005599e-16!GO:0006511;ubiquitin-dependent protein catabolic process;9.51586652658149e-16!GO:0044257;cellular protein catabolic process;1.06377976481148e-15!GO:0016462;pyrophosphatase activity;1.28468135963518e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.53267321747577e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8651566630171e-15!GO:0016192;vesicle-mediated transport;2.10356813520089e-15!GO:0043285;biopolymer catabolic process;2.6596960547603e-15!GO:0022618;protein-RNA complex assembly;2.6596960547603e-15!GO:0017111;nucleoside-triphosphatase activity;3.80747112851099e-15!GO:0007242;intracellular signaling cascade;4.3451835236458e-15!GO:0006605;protein targeting;4.54099028992151e-15!GO:0006793;phosphorus metabolic process;7.03652483316945e-15!GO:0006796;phosphate metabolic process;7.03652483316945e-15!GO:0032553;ribonucleotide binding;2.44466834350241e-14!GO:0032555;purine ribonucleotide binding;2.44466834350241e-14!GO:0016604;nuclear body;3.82962307388689e-14!GO:0006913;nucleocytoplasmic transport;4.20912268713122e-14!GO:0048770;pigment granule;5.21020451625789e-14!GO:0042470;melanosome;5.21020451625789e-14!GO:0003712;transcription cofactor activity;8.10510084822076e-14!GO:0048519;negative regulation of biological process;8.97659337429883e-14!GO:0051169;nuclear transport;9.99982602618884e-14!GO:0044455;mitochondrial membrane part;1.07808581972497e-13!GO:0009057;macromolecule catabolic process;1.0931152556091e-13!GO:0017076;purine nucleotide binding;1.85773328431294e-13!GO:0015934;large ribosomal subunit;2.45637282371603e-13!GO:0006955;immune response;3.05100863171125e-13!GO:0044248;cellular catabolic process;4.10270226990048e-13!GO:0016310;phosphorylation;5.12765768210933e-13!GO:0006366;transcription from RNA polymerase II promoter;7.41276844386843e-13!GO:0015935;small ribosomal subunit;8.16056258853957e-13!GO:0016874;ligase activity;8.7412447674777e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.10741349731519e-12!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.54262174905183e-12!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.63776250053651e-12!GO:0016607;nuclear speck;1.79417433609637e-12!GO:0050789;regulation of biological process;1.85873390095764e-12!GO:0043069;negative regulation of programmed cell death;2.00533575056105e-12!GO:0043066;negative regulation of apoptosis;2.74938771614876e-12!GO:0008135;translation factor activity, nucleic acid binding;3.94445607446415e-12!GO:0012505;endomembrane system;4.31788277686999e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.43335955679297e-12!GO:0005773;vacuole;4.61588892123405e-12!GO:0065009;regulation of a molecular function;5.1783578276034e-12!GO:0030163;protein catabolic process;6.69649402249047e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03484078694269e-11!GO:0005768;endosome;1.21637799752283e-11!GO:0051246;regulation of protein metabolic process;1.54636487634246e-11!GO:0005746;mitochondrial respiratory chain;1.90447705803373e-11!GO:0005730;nucleolus;2.07168233025189e-11!GO:0006457;protein folding;2.71570588815957e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.92674462259018e-11!GO:0000375;RNA splicing, via transesterification reactions;2.92674462259018e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.92674462259018e-11!GO:0005524;ATP binding;6.49901463714296e-11!GO:0000323;lytic vacuole;6.63866202516226e-11!GO:0005764;lysosome;6.63866202516226e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;7.52078143085339e-11!GO:0006916;anti-apoptosis;7.62690400554729e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.51294671801274e-11!GO:0032559;adenyl ribonucleotide binding;1.23642272544627e-10!GO:0007049;cell cycle;1.58259147123826e-10!GO:0065007;biological regulation;1.73147251299025e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.73858278370002e-10!GO:0003954;NADH dehydrogenase activity;1.73858278370002e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.73858278370002e-10!GO:0006323;DNA packaging;2.95594183312938e-10!GO:0005794;Golgi apparatus;3.21859497183017e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.39669185779753e-10!GO:0017038;protein import;3.80860537903877e-10!GO:0043228;non-membrane-bound organelle;4.46906241466939e-10!GO:0043232;intracellular non-membrane-bound organelle;4.46906241466939e-10!GO:0008639;small protein conjugating enzyme activity;5.68888580487936e-10!GO:0006446;regulation of translational initiation;5.69729407593035e-10!GO:0006413;translational initiation;6.23720167331084e-10!GO:0031324;negative regulation of cellular metabolic process;6.50698949836217e-10!GO:0005635;nuclear envelope;7.1877220499472e-10!GO:0004842;ubiquitin-protein ligase activity;9.69300100926254e-10!GO:0030554;adenyl nucleotide binding;1.00214627107141e-09!GO:0048522;positive regulation of cellular process;1.0920777474868e-09!GO:0003743;translation initiation factor activity;1.32968591249297e-09!GO:0051726;regulation of cell cycle;1.41803425176455e-09!GO:0043065;positive regulation of apoptosis;2.20485765623698e-09!GO:0000074;regulation of progression through cell cycle;2.52511496648953e-09!GO:0019787;small conjugating protein ligase activity;2.77204025793253e-09!GO:0019222;regulation of metabolic process;3.23836165094399e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.74091355014199e-09!GO:0042773;ATP synthesis coupled electron transport;3.74091355014199e-09!GO:0006417;regulation of translation;3.74091355014199e-09!GO:0043068;positive regulation of programmed cell death;3.84457349522307e-09!GO:0005783;endoplasmic reticulum;4.51944843951265e-09!GO:0051186;cofactor metabolic process;5.24916708156571e-09!GO:0006950;response to stress;5.72073015977468e-09!GO:0030964;NADH dehydrogenase complex (quinone);8.65610229685747e-09!GO:0045271;respiratory chain complex I;8.65610229685747e-09!GO:0005747;mitochondrial respiratory chain complex I;8.65610229685747e-09!GO:0016787;hydrolase activity;9.82944148946178e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.12784605543867e-08!GO:0051276;chromosome organization and biogenesis;1.13249716922852e-08!GO:0019829;cation-transporting ATPase activity;1.19289090058301e-08!GO:0031980;mitochondrial lumen;1.19289090058301e-08!GO:0005759;mitochondrial matrix;1.19289090058301e-08!GO:0051170;nuclear import;1.22411977251217e-08!GO:0003713;transcription coactivator activity;1.37744918287466e-08!GO:0006917;induction of apoptosis;1.57811262288386e-08!GO:0006606;protein import into nucleus;1.84043624196631e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.99158092744589e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.23939843632808e-08!GO:0048518;positive regulation of biological process;2.3892944547881e-08!GO:0016887;ATPase activity;2.53837539406568e-08!GO:0031965;nuclear membrane;2.57008000470505e-08!GO:0016564;transcription repressor activity;2.57008000470505e-08!GO:0042623;ATPase activity, coupled;2.74827076583311e-08!GO:0012502;induction of programmed cell death;2.79522967426227e-08!GO:0009892;negative regulation of metabolic process;3.17996165702154e-08!GO:0019899;enzyme binding;3.44808629464621e-08!GO:0048193;Golgi vesicle transport;3.69871070348346e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.70618186758511e-08!GO:0009056;catabolic process;3.73126809239148e-08!GO:0005770;late endosome;4.24267549249631e-08!GO:0050790;regulation of catalytic activity;4.42508701818736e-08!GO:0009889;regulation of biosynthetic process;5.34645867656793e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.63003881663722e-08!GO:0031326;regulation of cellular biosynthetic process;8.41085997965359e-08!GO:0016563;transcription activator activity;8.90789737611464e-08!GO:0045321;leukocyte activation;9.09354140260242e-08!GO:0016481;negative regulation of transcription;9.90373598973754e-08!GO:0044453;nuclear membrane part;9.93026880652457e-08!GO:0009967;positive regulation of signal transduction;1.05712525284492e-07!GO:0006974;response to DNA damage stimulus;1.08689317149537e-07!GO:0007264;small GTPase mediated signal transduction;1.3116018979903e-07!GO:0065004;protein-DNA complex assembly;1.32013749660476e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.37176893279061e-07!GO:0051082;unfolded protein binding;1.37176893279061e-07!GO:0045786;negative regulation of progression through cell cycle;1.5208343315712e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57591856746314e-07!GO:0016881;acid-amino acid ligase activity;1.57591856746314e-07!GO:0009259;ribonucleotide metabolic process;1.67494947445302e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.88478376692719e-07!GO:0009150;purine ribonucleotide metabolic process;2.07602968893944e-07!GO:0016568;chromatin modification;2.1916120023336e-07!GO:0009260;ribonucleotide biosynthetic process;2.29416887092425e-07!GO:0009615;response to virus;2.30563560959031e-07!GO:0015986;ATP synthesis coupled proton transport;2.33102765481897e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.33102765481897e-07!GO:0044432;endoplasmic reticulum part;2.4965659772115e-07!GO:0022402;cell cycle process;2.56927701299373e-07!GO:0003924;GTPase activity;2.87324901282679e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.07006599042735e-07!GO:0006164;purine nucleotide biosynthetic process;3.40378963707711e-07!GO:0006732;coenzyme metabolic process;3.78550821838844e-07!GO:0044440;endosomal part;4.28600813095394e-07!GO:0010008;endosome membrane;4.28600813095394e-07!GO:0006163;purine nucleotide metabolic process;4.40184901262042e-07!GO:0031323;regulation of cellular metabolic process;4.94897316629269e-07!GO:0008565;protein transporter activity;6.10143413023971e-07!GO:0006333;chromatin assembly or disassembly;6.38821562877218e-07!GO:0006461;protein complex assembly;9.3767322713397e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.63945208540163e-07!GO:0009966;regulation of signal transduction;9.7246175614558e-07!GO:0048468;cell development;1.02278175231285e-06!GO:0008026;ATP-dependent helicase activity;1.29555489600504e-06!GO:0050657;nucleic acid transport;1.342461791149e-06!GO:0051236;establishment of RNA localization;1.342461791149e-06!GO:0050658;RNA transport;1.342461791149e-06!GO:0001775;cell activation;1.36373319500096e-06!GO:0005793;ER-Golgi intermediate compartment;1.36998952622502e-06!GO:0060090;molecular adaptor activity;1.44291010640242e-06!GO:0004386;helicase activity;1.56966024110056e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.64664963130494e-06!GO:0006403;RNA localization;1.78054380107218e-06!GO:0046649;lymphocyte activation;1.88384401747795e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.00578728790913e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.12673293546393e-06!GO:0008632;apoptotic program;2.4337502331686e-06!GO:0006754;ATP biosynthetic process;2.58387336839662e-06!GO:0006753;nucleoside phosphate metabolic process;2.58387336839662e-06!GO:0042110;T cell activation;2.74980756779546e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.88743422828485e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.88743422828485e-06!GO:0005525;GTP binding;2.88743422828485e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.93293568930579e-06!GO:0065002;intracellular protein transport across a membrane;3.0257656523568e-06!GO:0005643;nuclear pore;3.05151026700767e-06!GO:0009060;aerobic respiration;3.77952411748858e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.77952411748858e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.77952411748858e-06!GO:0003714;transcription corepressor activity;3.78844165385748e-06!GO:0005774;vacuolar membrane;4.60184573522554e-06!GO:0005761;mitochondrial ribosome;4.74167982223237e-06!GO:0000313;organellar ribosome;4.74167982223237e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.84751406593031e-06!GO:0009607;response to biotic stimulus;5.01465027365346e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.96464186211865e-06!GO:0008047;enzyme activator activity;6.05457931856274e-06!GO:0004298;threonine endopeptidase activity;6.05913679439118e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.36899181447727e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.36899181447727e-06!GO:0046034;ATP metabolic process;6.81437316947907e-06!GO:0005789;endoplasmic reticulum membrane;6.85571142355582e-06!GO:0009055;electron carrier activity;7.07319856839399e-06!GO:0032446;protein modification by small protein conjugation;7.23070706714504e-06!GO:0000785;chromatin;7.36383757684351e-06!GO:0003697;single-stranded DNA binding;8.73055778699456e-06!GO:0006281;DNA repair;9.24996690981418e-06!GO:0009141;nucleoside triphosphate metabolic process;9.51553091029276e-06!GO:0016567;protein ubiquitination;9.53803094683677e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.19053575438138e-05!GO:0005057;receptor signaling protein activity;1.59694022473336e-05!GO:0010468;regulation of gene expression;1.64280019196593e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.80054959876985e-05!GO:0005765;lysosomal membrane;1.83328554597377e-05!GO:0043566;structure-specific DNA binding;1.85544469339351e-05!GO:0044437;vacuolar part;1.95622217255265e-05!GO:0048475;coated membrane;1.95927746150364e-05!GO:0030117;membrane coat;1.95927746150364e-05!GO:0042254;ribosome biogenesis and assembly;2.09502780259165e-05!GO:0031902;late endosome membrane;2.33729381178481e-05!GO:0005070;SH3/SH2 adaptor activity;2.3785120006325e-05!GO:0004674;protein serine/threonine kinase activity;2.55115854964047e-05!GO:0045259;proton-transporting ATP synthase complex;2.56323727252149e-05!GO:0006401;RNA catabolic process;2.60555977875214e-05!GO:0006334;nucleosome assembly;2.85375074890044e-05!GO:0051028;mRNA transport;3.09091470231782e-05!GO:0009719;response to endogenous stimulus;3.18337027973366e-05!GO:0030120;vesicle coat;3.37937849940577e-05!GO:0030662;coated vesicle membrane;3.37937849940577e-05!GO:0031497;chromatin assembly;3.45421915979087e-05!GO:0006888;ER to Golgi vesicle-mediated transport;3.45825963684593e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.49124247227471e-05!GO:0032561;guanyl ribonucleotide binding;3.97786942188182e-05!GO:0019001;guanyl nucleotide binding;3.97786942188182e-05!GO:0016740;transferase activity;4.07543534541897e-05!GO:0031982;vesicle;4.13611472250327e-05!GO:0045333;cellular respiration;4.35467662009909e-05!GO:0051336;regulation of hydrolase activity;4.93355982851407e-05!GO:0005694;chromosome;4.99461974577787e-05!GO:0046930;pore complex;5.00327307869289e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.93727011985376e-05!GO:0015399;primary active transmembrane transporter activity;5.93727011985376e-05!GO:0031252;leading edge;5.93727011985376e-05!GO:0006350;transcription;6.23337714498402e-05!GO:0046983;protein dimerization activity;6.31522549730963e-05!GO:0000245;spliceosome assembly;6.62219056624773e-05!GO:0051168;nuclear export;7.00029303210607e-05!GO:0051188;cofactor biosynthetic process;7.98891244269046e-05!GO:0002764;immune response-regulating signal transduction;8.21647476549544e-05!GO:0016044;membrane organization and biogenesis;8.37356487480235e-05!GO:0016197;endosome transport;8.44432624998786e-05!GO:0030695;GTPase regulator activity;8.813899693586e-05!GO:0006752;group transfer coenzyme metabolic process;8.8943010068123e-05!GO:0001816;cytokine production;9.09567871457307e-05!GO:0030097;hemopoiesis;9.20171135622348e-05!GO:0007265;Ras protein signal transduction;9.25585371428171e-05!GO:0019221;cytokine and chemokine mediated signaling pathway;9.33029722882095e-05!GO:0002757;immune response-activating signal transduction;0.00010473247610306!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000132683873533311!GO:0045892;negative regulation of transcription, DNA-dependent;0.000140246075180568!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000158122213787848!GO:0006099;tricarboxylic acid cycle;0.000160599691209993!GO:0046356;acetyl-CoA catabolic process;0.000160599691209993!GO:0007005;mitochondrion organization and biogenesis;0.00017300560822382!GO:0031988;membrane-bound vesicle;0.000181847616838272!GO:0044427;chromosomal part;0.000188396133543053!GO:0051090;regulation of transcription factor activity;0.000193125480081861!GO:0030099;myeloid cell differentiation;0.00019328148880252!GO:0006613;cotranslational protein targeting to membrane;0.00020784701178939!GO:0005769;early endosome;0.000208200864431507!GO:0031410;cytoplasmic vesicle;0.000213636712405063!GO:0003724;RNA helicase activity;0.000223742685914347!GO:0009893;positive regulation of metabolic process;0.000246840095047631!GO:0006402;mRNA catabolic process;0.000254704985145504!GO:0051187;cofactor catabolic process;0.00029169574385071!GO:0005885;Arp2/3 protein complex;0.000296561204183144!GO:0016779;nucleotidyltransferase activity;0.000297451629341924!GO:0000278;mitotic cell cycle;0.000321206185114099!GO:0016301;kinase activity;0.000337779098236107!GO:0000151;ubiquitin ligase complex;0.000339905881471548!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.000339959266423215!GO:0005096;GTPase activator activity;0.000374777698649722!GO:0009108;coenzyme biosynthetic process;0.000399214986185831!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.000439049629222971!GO:0051338;regulation of transferase activity;0.000439258663529963!GO:0046822;regulation of nucleocytoplasmic transport;0.000441072517203163!GO:0051251;positive regulation of lymphocyte activation;0.000446115068659925!GO:0016072;rRNA metabolic process;0.00044661955858012!GO:0016023;cytoplasmic membrane-bound vesicle;0.000459665460182851!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000495459727718553!GO:0043549;regulation of kinase activity;0.000504441136927107!GO:0042802;identical protein binding;0.000505303437637422!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000507706884057728!GO:0006364;rRNA processing;0.000507706884057728!GO:0043492;ATPase activity, coupled to movement of substances;0.000525284491482967!GO:0002520;immune system development;0.0005322895472838!GO:0006084;acetyl-CoA metabolic process;0.000559635038776443!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000572235212179739!GO:0006468;protein amino acid phosphorylation;0.000584506715949069!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000590171979037402!GO:0007050;cell cycle arrest;0.000629157422906574!GO:0032940;secretion by cell;0.000636270148529233!GO:0051707;response to other organism;0.000646222834147478!GO:0022890;inorganic cation transmembrane transporter activity;0.00068182810696534!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000709564274621906!GO:0018193;peptidyl-amino acid modification;0.000776455685945292!GO:0007259;JAK-STAT cascade;0.000779168059764046!GO:0008186;RNA-dependent ATPase activity;0.000789133828718913!GO:0008654;phospholipid biosynthetic process;0.00079773321501465!GO:0008234;cysteine-type peptidase activity;0.000805113882456548!GO:0001817;regulation of cytokine production;0.000807026847982107!GO:0009109;coenzyme catabolic process;0.000899574801075975!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000904584182261066!GO:0045859;regulation of protein kinase activity;0.000905683862579991!GO:0051223;regulation of protein transport;0.000906847439819008!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000922316771549973!GO:0051427;hormone receptor binding;0.000926891039663636!GO:0044431;Golgi apparatus part;0.000928771611878007!GO:0001819;positive regulation of cytokine production;0.000939789559941672!GO:0009117;nucleotide metabolic process;0.00104291497995521!GO:0043281;regulation of caspase activity;0.00109671466078515!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00110694358145059!GO:0003729;mRNA binding;0.00114592751193825!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00140664116378889!GO:0048534;hemopoietic or lymphoid organ development;0.00144510405496054!GO:0001772;immunological synapse;0.00145752053103124!GO:0005798;Golgi-associated vesicle;0.00149506917658414!GO:0005667;transcription factor complex;0.00151527830881478!GO:0006919;caspase activation;0.00157880218371053!GO:0045941;positive regulation of transcription;0.00158048920848509!GO:0001726;ruffle;0.00159721016773505!GO:0005083;small GTPase regulator activity;0.00162078929747479!GO:0022415;viral reproductive process;0.00162078929747479!GO:0035257;nuclear hormone receptor binding;0.00162620970806939!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00162620970806939!GO:0016363;nuclear matrix;0.00164277158676579!GO:0005813;centrosome;0.00168632238911385!GO:0006818;hydrogen transport;0.00177614647671778!GO:0046519;sphingoid metabolic process;0.00181592682896454!GO:0006897;endocytosis;0.00196440280466125!GO:0010324;membrane invagination;0.00196440280466125!GO:0033157;regulation of intracellular protein transport;0.00197442534391369!GO:0042306;regulation of protein import into nucleus;0.00197442534391369!GO:0015992;proton transport;0.00198934069118556!GO:0043623;cellular protein complex assembly;0.00198934069118556!GO:0004004;ATP-dependent RNA helicase activity;0.00205947719565217!GO:0043433;negative regulation of transcription factor activity;0.0021610493232767!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00224912359482586!GO:0031325;positive regulation of cellular metabolic process;0.00229937908792044!GO:0007034;vacuolar transport;0.00233138254364652!GO:0043021;ribonucleoprotein binding;0.0023745193915448!GO:0019220;regulation of phosphate metabolic process;0.00237758494443814!GO:0051174;regulation of phosphorus metabolic process;0.00237758494443814!GO:0006611;protein export from nucleus;0.00242376563042501!GO:0051789;response to protein stimulus;0.00243145656129747!GO:0006986;response to unfolded protein;0.00243145656129747!GO:0032774;RNA biosynthetic process;0.00249734552207436!GO:0045637;regulation of myeloid cell differentiation;0.00249983032272853!GO:0002521;leukocyte differentiation;0.00250194079237577!GO:0002252;immune effector process;0.00255919515416275!GO:0006351;transcription, DNA-dependent;0.00261210451782777!GO:0006672;ceramide metabolic process;0.00261611075741132!GO:0002274;myeloid leukocyte activation;0.0026444176553839!GO:0043280;positive regulation of caspase activity;0.00269738698978001!GO:0016251;general RNA polymerase II transcription factor activity;0.0027323325335971!GO:0045449;regulation of transcription;0.0028239510992399!GO:0006612;protein targeting to membrane;0.0028239510992399!GO:0045893;positive regulation of transcription, DNA-dependent;0.00284279123296043!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.00288642737032847!GO:0048471;perinuclear region of cytoplasm;0.00313983195601926!GO:0006260;DNA replication;0.00316190104965526!GO:0017091;AU-rich element binding;0.0033651694633247!GO:0050779;RNA destabilization;0.0033651694633247!GO:0000289;poly(A) tail shortening;0.0033651694633247!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00339671123107371!GO:0033116;ER-Golgi intermediate compartment membrane;0.00344020893885913!GO:0002443;leukocyte mediated immunity;0.00351056988510638!GO:0030218;erythrocyte differentiation;0.00377043836078462!GO:0005637;nuclear inner membrane;0.00385060979021735!GO:0043300;regulation of leukocyte degranulation;0.00386985431421301!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00394521307850624!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00394521307850624!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00394521307850624!GO:0050871;positive regulation of B cell activation;0.00399039989409851!GO:0019904;protein domain specific binding;0.004001367852265!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00416277157263045!GO:0007040;lysosome organization and biogenesis;0.00436437244982995!GO:0050900;leukocyte migration;0.00450852773129275!GO:0050851;antigen receptor-mediated signaling pathway;0.00451714239031524!GO:0000786;nucleosome;0.00485167436914234!GO:0030658;transport vesicle membrane;0.00501372436177748!GO:0008637;apoptotic mitochondrial changes;0.00514046240480511!GO:0050865;regulation of cell activation;0.0051730615383577!GO:0030384;phosphoinositide metabolic process;0.0051730615383577!GO:0042990;regulation of transcription factor import into nucleus;0.0051730615383577!GO:0042991;transcription factor import into nucleus;0.0051730615383577!GO:0006352;transcription initiation;0.00526919103171659!GO:0008287;protein serine/threonine phosphatase complex;0.00528512709526381!GO:0006643;membrane lipid metabolic process;0.0052853599719126!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00530590430515858!GO:0006968;cellular defense response;0.00533065147429343!GO:0006952;defense response;0.0057802769248651!GO:0042101;T cell receptor complex;0.00580506367870889!GO:0007041;lysosomal transport;0.00581093875319674!GO:0043085;positive regulation of catalytic activity;0.00621544517728575!GO:0050870;positive regulation of T cell activation;0.00628341683959099!GO:0045576;mast cell activation;0.00630089924724101!GO:0006414;translational elongation;0.00630379443523628!GO:0045454;cell redox homeostasis;0.00644504730467761!GO:0051249;regulation of lymphocyte activation;0.00649746280033592!GO:0005815;microtubule organizing center;0.00657086608521461!GO:0008624;induction of apoptosis by extracellular signals;0.00671035670764945!GO:0043299;leukocyte degranulation;0.00671035670764945!GO:0005741;mitochondrial outer membrane;0.00678012663224358!GO:0019901;protein kinase binding;0.00678012663224358!GO:0043087;regulation of GTPase activity;0.00694272910218267!GO:0004722;protein serine/threonine phosphatase activity;0.00698573935169911!GO:0051345;positive regulation of hydrolase activity;0.00705267576466148!GO:0030118;clathrin coat;0.00706688582893152!GO:0051329;interphase of mitotic cell cycle;0.0071437514264061!GO:0019210;kinase inhibitor activity;0.00725837939529858!GO:0051092;activation of NF-kappaB transcription factor;0.00739323475111588!GO:0033367;protein localization in mast cell secretory granule;0.00739323475111588!GO:0033365;protein localization in organelle;0.00739323475111588!GO:0033371;T cell secretory granule organization and biogenesis;0.00739323475111588!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00739323475111588!GO:0033375;protease localization in T cell secretory granule;0.00739323475111588!GO:0042629;mast cell granule;0.00739323475111588!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00739323475111588!GO:0033364;mast cell secretory granule organization and biogenesis;0.00739323475111588!GO:0033380;granzyme B localization in T cell secretory granule;0.00739323475111588!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00739323475111588!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00739323475111588!GO:0033368;protease localization in mast cell secretory granule;0.00739323475111588!GO:0033366;protein localization in secretory granule;0.00739323475111588!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00739323475111588!GO:0033374;protein localization in T cell secretory granule;0.00739323475111588!GO:0005762;mitochondrial large ribosomal subunit;0.0077156626872124!GO:0000315;organellar large ribosomal subunit;0.0077156626872124!GO:0045045;secretory pathway;0.00784429834496688!GO:0044262;cellular carbohydrate metabolic process;0.0080483524976295!GO:0006891;intra-Golgi vesicle-mediated transport;0.00816724960056776!GO:0006984;ER-nuclear signaling pathway;0.00817243154055333!GO:0002444;myeloid leukocyte mediated immunity;0.00817243154055333!GO:0000139;Golgi membrane;0.00827356588699658!GO:0045792;negative regulation of cell size;0.00827356588699658!GO:0051098;regulation of binding;0.00832954947043641!GO:0030176;integral to endoplasmic reticulum membrane;0.00837747475107389!GO:0006650;glycerophospholipid metabolic process;0.00845063150305679!GO:0004860;protein kinase inhibitor activity;0.00856353330074131!GO:0030660;Golgi-associated vesicle membrane;0.00892183845251236!GO:0030149;sphingolipid catabolic process;0.00893612111916916!GO:0043488;regulation of mRNA stability;0.00905116981384129!GO:0043487;regulation of RNA stability;0.00905116981384129!GO:0035035;histone acetyltransferase binding;0.00959856718945699!GO:0030308;negative regulation of cell growth;0.00967140715305551!GO:0006693;prostaglandin metabolic process;0.00971909204586593!GO:0006692;prostanoid metabolic process;0.00971909204586593!GO:0016791;phosphoric monoester hydrolase activity;0.00972608586051006!GO:0006607;NLS-bearing substrate import into nucleus;0.00978790690718579!GO:0030217;T cell differentiation;0.00991657784574848!GO:0031072;heat shock protein binding;0.0100749203416287!GO:0007033;vacuole organization and biogenesis;0.0105638631094552!GO:0051252;regulation of RNA metabolic process;0.0106058757130764!GO:0005684;U2-dependent spliceosome;0.0109457529729898!GO:0033673;negative regulation of kinase activity;0.0109633829909014!GO:0006469;negative regulation of protein kinase activity;0.0109633829909014!GO:0004185;serine carboxypeptidase activity;0.0111064241118913!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0111064241118913!GO:0002819;regulation of adaptive immune response;0.0111064241118913!GO:0030041;actin filament polymerization;0.011302825293306!GO:0051049;regulation of transport;0.0113390097360787!GO:0015630;microtubule cytoskeleton;0.0114024855656382!GO:0051325;interphase;0.0116489030534258!GO:0002440;production of molecular mediator of immune response;0.0117409038662771!GO:0031968;organelle outer membrane;0.0119410497314208!GO:0043681;protein import into mitochondrion;0.0121466080552196!GO:0008629;induction of apoptosis by intracellular signals;0.0122418300521264!GO:0006399;tRNA metabolic process;0.0124448719260926!GO:0046966;thyroid hormone receptor binding;0.0125610409880657!GO:0043304;regulation of mast cell degranulation;0.0126361777838799!GO:0046456;icosanoid biosynthetic process;0.0126752865453917!GO:0019783;small conjugating protein-specific protease activity;0.0127461002544351!GO:0030867;rough endoplasmic reticulum membrane;0.0127461002544351!GO:0046489;phosphoinositide biosynthetic process;0.0133249107900825!GO:0004177;aminopeptidase activity;0.0133684166545328!GO:0019867;outer membrane;0.0134731794205098!GO:0045926;negative regulation of growth;0.0135759583142456!GO:0019883;antigen processing and presentation of endogenous antigen;0.0135984743226387!GO:0048487;beta-tubulin binding;0.0136682020504127!GO:0016311;dephosphorylation;0.0137104298068357!GO:0032386;regulation of intracellular transport;0.0137536963449506!GO:0003899;DNA-directed RNA polymerase activity;0.0143295693034336!GO:0045058;T cell selection;0.0145088694667905!GO:0001836;release of cytochrome c from mitochondria;0.0145088694667905!GO:0003725;double-stranded RNA binding;0.0147133861988485!GO:0032763;regulation of mast cell cytokine production;0.0147304225983125!GO:0032762;mast cell cytokine production;0.0147304225983125!GO:0042325;regulation of phosphorylation;0.0147327728076584!GO:0051091;positive regulation of transcription factor activity;0.0147937370409541!GO:0031901;early endosome membrane;0.0152032370414088!GO:0019843;rRNA binding;0.0153302794052367!GO:0006405;RNA export from nucleus;0.0155084932952383!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0155500114720557!GO:0009165;nucleotide biosynthetic process;0.0158071510992553!GO:0050863;regulation of T cell activation;0.0158717130697146!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0159214974089653!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0159214974089653!GO:0051059;NF-kappaB binding;0.0160088840886474!GO:0046474;glycerophospholipid biosynthetic process;0.0160803178074113!GO:0030100;regulation of endocytosis;0.0160803178074113!GO:0015631;tubulin binding;0.0160803178074113!GO:0002682;regulation of immune system process;0.0161160494266239!GO:0030674;protein binding, bridging;0.0162177517872375!GO:0045603;positive regulation of endothelial cell differentiation;0.0165702204999506!GO:0031625;ubiquitin protein ligase binding;0.0166024279705934!GO:0004843;ubiquitin-specific protease activity;0.0166024279705934!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0166024279705934!GO:0030968;unfolded protein response;0.0166468602887909!GO:0051235;maintenance of localization;0.0166468602887909!GO:0051087;chaperone binding;0.0166468602887909!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0166468602887909!GO:0004812;aminoacyl-tRNA ligase activity;0.0166468602887909!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0166468602887909!GO:0048500;signal recognition particle;0.0172405033297162!GO:0002250;adaptive immune response;0.017359668294294!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.017359668294294!GO:0047485;protein N-terminus binding;0.0174277475458361!GO:0001667;ameboidal cell migration;0.0174277475458361!GO:0032027;myosin light chain binding;0.0174277475458361!GO:0030433;ER-associated protein catabolic process;0.0176353828706923!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0176353828706923!GO:0051348;negative regulation of transferase activity;0.0179665848373624!GO:0002237;response to molecule of bacterial origin;0.018264850756519!GO:0005669;transcription factor TFIID complex;0.018264850756519!GO:0000209;protein polyubiquitination;0.0183045610397869!GO:0030127;COPII vesicle coat;0.0183138522626862!GO:0012507;ER to Golgi transport vesicle membrane;0.0183138522626862!GO:0042108;positive regulation of cytokine biosynthetic process;0.0183138522626862!GO:0007006;mitochondrial membrane organization and biogenesis;0.0185178441113862!GO:0003690;double-stranded DNA binding;0.0185604092353388!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0185894134651792!GO:0043022;ribosome binding;0.0185928463273997!GO:0016584;nucleosome positioning;0.0185928463273997!GO:0006355;regulation of transcription, DNA-dependent;0.0191084819559831!GO:0051050;positive regulation of transport;0.0192210810594202!GO:0008270;zinc ion binding;0.019229252256723!GO:0002448;mast cell mediated immunity;0.0193795008508589!GO:0043303;mast cell degranulation;0.0193795008508589!GO:0030098;lymphocyte differentiation;0.0196974092630596!GO:0001516;prostaglandin biosynthetic process;0.0198240732370664!GO:0046457;prostanoid biosynthetic process;0.0198240732370664!GO:0019079;viral genome replication;0.0198240732370664!GO:0003746;translation elongation factor activity;0.0198585473647476!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0200259197885196!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0202829352755531!GO:0005791;rough endoplasmic reticulum;0.0207531774036222!GO:0019900;kinase binding;0.0207531774036222!GO:0006914;autophagy;0.0210816112154799!GO:0042113;B cell activation;0.0211612377160006!GO:0045947;negative regulation of translational initiation;0.0216171036889807!GO:0008250;oligosaccharyl transferase complex;0.0217441798473695!GO:0008286;insulin receptor signaling pathway;0.0220127906450385!GO:0002449;lymphocyte mediated immunity;0.0223177717099834!GO:0030134;ER to Golgi transport vesicle;0.0225449113533162!GO:0046467;membrane lipid biosynthetic process;0.0230507039839073!GO:0002467;germinal center formation;0.0230564796633914!GO:0022411;cellular component disassembly;0.0234008254898752!GO:0005869;dynactin complex;0.0237458783280631!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0237923318698993!GO:0004197;cysteine-type endopeptidase activity;0.0238276297982826!GO:0008361;regulation of cell size;0.0239457642667388!GO:0006509;membrane protein ectodomain proteolysis;0.0242914477099374!GO:0033619;membrane protein proteolysis;0.0242914477099374!GO:0003702;RNA polymerase II transcription factor activity;0.0243388767641074!GO:0030119;AP-type membrane coat adaptor complex;0.0244839016229466!GO:0050811;GABA receptor binding;0.0247253302798965!GO:0000119;mediator complex;0.0249943921853066!GO:0004576;oligosaccharyl transferase activity;0.0250702716247353!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0253730531070448!GO:0006376;mRNA splice site selection;0.0258522836558669!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0258522836558669!GO:0032318;regulation of Ras GTPase activity;0.0259769654493227!GO:0000287;magnesium ion binding;0.025980639625045!GO:0015923;mannosidase activity;0.026156407562153!GO:0030518;steroid hormone receptor signaling pathway;0.0264287649996109!GO:0045646;regulation of erythrocyte differentiation;0.026616258249152!GO:0043038;amino acid activation;0.0266264986569949!GO:0006418;tRNA aminoacylation for protein translation;0.0266264986569949!GO:0043039;tRNA aminoacylation;0.0266264986569949!GO:0006458;'de novo' protein folding;0.0270570036256008!GO:0051084;'de novo' posttranslational protein folding;0.0270570036256008!GO:0042287;MHC protein binding;0.0273650124196752!GO:0005788;endoplasmic reticulum lumen;0.0274506540046119!GO:0019377;glycolipid catabolic process;0.0277466465597413!GO:0045936;negative regulation of phosphate metabolic process;0.0277466465597413!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0277466465597413!GO:0015002;heme-copper terminal oxidase activity;0.0277466465597413!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0277466465597413!GO:0004129;cytochrome-c oxidase activity;0.0277466465597413!GO:0008333;endosome to lysosome transport;0.0282551713210108!GO:0030258;lipid modification;0.0283161347829829!GO:0003711;transcription elongation regulator activity;0.0286460931730817!GO:0002218;activation of innate immune response;0.0292760084820408!GO:0002758;innate immune response-activating signal transduction;0.0292760084820408!GO:0006595;polyamine metabolic process;0.0294031843994843!GO:0015036;disulfide oxidoreductase activity;0.0294057744052227!GO:0005048;signal sequence binding;0.0300586625739897!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0301252800398915!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0304495221907393!GO:0006354;RNA elongation;0.0304871175690874!GO:0005484;SNAP receptor activity;0.0309511732067993!GO:0015980;energy derivation by oxidation of organic compounds;0.0311396163993108!GO:0004221;ubiquitin thiolesterase activity;0.0312166880940888!GO:0004672;protein kinase activity;0.0312211202983856!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0317088858297584!GO:0045047;protein targeting to ER;0.0317088858297584!GO:0000082;G1/S transition of mitotic cell cycle;0.0318790450467874!GO:0050776;regulation of immune response;0.0320244585868678!GO:0008538;proteasome activator activity;0.0324001427276805!GO:0030131;clathrin adaptor complex;0.0336946927086268!GO:0001558;regulation of cell growth;0.0337857670535518!GO:0016788;hydrolase activity, acting on ester bonds;0.0338442247336736!GO:0006661;phosphatidylinositol biosynthetic process;0.0338526230390828!GO:0006261;DNA-dependent DNA replication;0.0343611236735815!GO:0033549;MAP kinase phosphatase activity;0.0343611236735815!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0343611236735815!GO:0050864;regulation of B cell activation;0.0349154198098955!GO:0019058;viral infectious cycle;0.0362193701498969!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0362634189703473!GO:0008139;nuclear localization sequence binding;0.0362634189703473!GO:0008312;7S RNA binding;0.036418015690832!GO:0016049;cell growth;0.0370009688255778!GO:0005099;Ras GTPase activator activity;0.0373833772638381!GO:0048002;antigen processing and presentation of peptide antigen;0.0374492195633174!GO:0006954;inflammatory response;0.03831935987372!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0391558601630268!GO:0046426;negative regulation of JAK-STAT cascade;0.0391558601630268!GO:0006516;glycoprotein catabolic process;0.0392860585477846!GO:0030521;androgen receptor signaling pathway;0.0397233882896286!GO:0000303;response to superoxide;0.0398662027769215!GO:0000118;histone deacetylase complex;0.0399553392597574!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0400026594810753!GO:0043407;negative regulation of MAP kinase activity;0.0400606173366072!GO:0006690;icosanoid metabolic process;0.0400646472203381!GO:0018196;peptidyl-asparagine modification;0.0401081701542328!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0401081701542328!GO:0006644;phospholipid metabolic process;0.0408730209581313!GO:0000165;MAPKKK cascade;0.04099011095014!GO:0045746;negative regulation of Notch signaling pathway;0.0411047545184628!GO:0030595;leukocyte chemotaxis;0.0411802093886314!GO:0043306;positive regulation of mast cell degranulation;0.0412489723708555!GO:0045921;positive regulation of exocytosis;0.0412489723708555!GO:0043302;positive regulation of leukocyte degranulation;0.0412489723708555!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0418496016545317!GO:0030027;lamellipodium;0.0421234414621756!GO:0004218;cathepsin S activity;0.0427653455987598!GO:0022403;cell cycle phase;0.0427983892196259!GO:0051101;regulation of DNA binding;0.0428938053383853!GO:0006740;NADPH regeneration;0.0436380251962706!GO:0006098;pentose-phosphate shunt;0.0436380251962706!GO:0042326;negative regulation of phosphorylation;0.0436977137007694!GO:0030036;actin cytoskeleton organization and biogenesis;0.0439868898080809!GO:0030133;transport vesicle;0.0444947840361178!GO:0043621;protein self-association;0.0446578345246167!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0452075436451724!GO:0050671;positive regulation of lymphocyte proliferation;0.0452075436451724!GO:0032946;positive regulation of mononuclear cell proliferation;0.0452075436451724!GO:0000087;M phase of mitotic cell cycle;0.045439645955441!GO:0007067;mitosis;0.0455612342401178!GO:0005095;GTPase inhibitor activity;0.0456333843070934!GO:0017166;vinculin binding;0.0459320008342231!GO:0051920;peroxiredoxin activity;0.0459320008342231!GO:0006626;protein targeting to mitochondrion;0.0461805497632017!GO:0004527;exonuclease activity;0.0466707074257997!GO:0006213;pyrimidine nucleoside metabolic process;0.0472783610124955!GO:0009891;positive regulation of biosynthetic process;0.0475397276635934!GO:0046914;transition metal ion binding;0.0479426392716044!GO:0030663;COPI coated vesicle membrane;0.0484147053438827!GO:0030126;COPI vesicle coat;0.0484147053438827!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0485972134117757!GO:0016859;cis-trans isomerase activity;0.0485972134117757!GO:0016272;prefoldin complex;0.0494579009781257!GO:0043506;regulation of JNK activity;0.0495418297695714!GO:0030125;clathrin vesicle coat;0.0496438611345682!GO:0030665;clathrin coated vesicle membrane;0.0496438611345682!GO:0045113;regulation of integrin biosynthetic process;0.0496589872155483!GO:0045112;integrin biosynthetic process;0.0496589872155483
 |sample_id=12241
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=blood
 |top_motifs=RUNX1..3:4.21575783649;ATF5_CREB3:3.69779579453;ETS1,2:3.65670332379;PAX2:3.61852322847;RORA:3.53943921668;SPIB:3.42978654309;NFKB1_REL_RELA:3.32387274331;CREB1:3.23673041271;NFIL3:3.23431794048;SPI1:3.2233103805;ATF4:3.13273070231;NFE2:3.08465508529;BACH2:3.06675242243;FOS_FOS{B,L1}_JUN{B,D}:2.86947807506;FOSL2:2.81454758208;EP300:2.80605574832;JUN:2.74497339738;FOX{F1,F2,J1}:2.69861036724;NANOG{mouse}:2.66378065212;NFE2L2:2.61236583708;ELF1,2,4:2.5047842114;RFX2..5_RFXANK_RFXAP:2.47060872985;FOX{D1,D2}:2.38601850077;CEBPA,B_DDIT3:2.36270839118;FOXO1,3,4:2.28351673006;HLF:2.26383202635;DMAP1_NCOR{1,2}_SMARC:2.23588721291;TGIF1:2.21914752344;FOXN1:2.16368898353;RFX1:2.09917611368;NFE2L1:1.89027283944;HMX1:1.86134851992;ATF6:1.6882144969;IRF1,2:1.6051585742;STAT2,4,6:1.58701527035;NFATC1..3:1.49739081121;BPTF:1.47897772528;SREBF1,2:1.45848823597;T:1.42352079;MAFB:1.39436833614;IRF7:1.3132189873;PAX3,7:1.2972273935;ATF2:1.24221185095;PPARG:1.14062657491;XBP1:1.01401168859;NKX2-1,4:0.983954111264;RXRA_VDR{dimer}:0.969602375297;FOXP3:0.891801889218;HBP1_HMGB_SSRP1_UBTF:0.88854976699;HIF1A:0.866172872035;TBX4,5:0.820196413646;SMAD1..7,9:0.742873460369;FOX{I1,J2}:0.736844345354;TLX2:0.733636248265;GLI1..3:0.707543457167;GATA6:0.679921784536;RBPJ:0.673413613135;HMGA1,2:0.662972341951;NANOG:0.620461213958;ESRRA:0.511785229587;HES1:0.411223846676;TFAP4:0.30163276289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.27027724736;SRF:0.219936805208;MYB:0.189171460922;STAT5{A,B}:0.180612507564;TFCP2:0.134327159138;SOX2:0.128457781853;NR5A1,2:0.109386415455;BREu{core}:0.0711522688619;MEF2{A,B,C,D}:-0.00719524904109;ESR1:-0.0375248167593;PAX8:-0.0574841803767;EN1,2:-0.073587608417;DBP:-0.103838766024;NR1H4:-0.131776315182;HSF1,2:-0.134462418884;PDX1:-0.137109332718;HOX{A5,B5}:-0.153404368318;POU5F1:-0.178542263805;FOXA2:-0.22766449854;TBP:-0.25649020656;AHR_ARNT_ARNT2:-0.308539711621;MYFfamily:-0.34104911476;PAX6:-0.381570305853;EGR1..3:-0.388946176302;ALX4:-0.39801663325;ZNF148:-0.410733738371;NHLH1,2:-0.434928721703;POU2F1..3:-0.443701877982;GATA4:-0.486839463553;HOXA9_MEIS1:-0.489573266033;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.511497543804;ZNF238:-0.523570749281;TAL1_TCF{3,4,12}:-0.527808328056;NFIX:-0.577625554633;STAT1,3:-0.606355615702;PBX1:-0.612724871877;PATZ1:-0.61543031389;RXR{A,B,G}:-0.621062863875;CRX:-0.656952940324;VSX1,2:-0.662917090018;NFY{A,B,C}:-0.686176767883;MTE{core}:-0.721400109318;OCT4_SOX2{dimer}:-0.725289067037;MYOD1:-0.733211299058;LEF1_TCF7_TCF7L1,2:-0.736360986303;ELK1,4_GABP{A,B1}:-0.748697685529;PAX4:-0.770500442491;SPZ1:-0.797998448566;NR6A1:-0.81830211335;HNF4A_NR2F1,2:-0.832910867432;PAX5:-0.858677607487;MZF1:-0.868271499583;SP1:-0.909001904443;SOX5:-0.935907484808;FOXL1:-0.950459335898;ZEB1:-0.968528843233;PRRX1,2:-0.979977372009;TFAP2{A,C}:-0.981520875432;TFAP2B:-1.04359717013;SOX{8,9,10}:-1.04646541021;HNF1A:-1.0783660168;MED-1{core}:-1.08570679811;E2F1..5:-1.11846299555;TFDP1:-1.12596802842;REST:-1.14193710794;GCM1,2:-1.1566216709;IKZF1:-1.15971679684;ZFP161:-1.16827515115;SNAI1..3:-1.19110611437;RREB1:-1.21386551408;CDX1,2,4:-1.24634746803;PRDM1:-1.25953113324;MAZ:-1.29872663412;MTF1:-1.31818290064;EBF1:-1.32150076899;ZNF423:-1.34994250641;FOXD3:-1.38168884591;NR3C1:-1.38321574103;GZF1:-1.39040120629;IKZF2:-1.40103701661;HOX{A6,A7,B6,B7}:-1.43535826627;TP53:-1.45296038717;AR:-1.47023288814;FOXP1:-1.48248095731;LMO2:-1.52159650383;FOXM1:-1.53123860738;ZIC1..3:-1.54264709093;ZBTB6:-1.55543282261;GTF2I:-1.59418974775;TLX1..3_NFIC{dimer}:-1.60748834712;ZNF384:-1.62478623668;CUX2:-1.67203470095;XCPE1{core}:-1.68135066271;GTF2A1,2:-1.73447295122;PAX1,9:-1.73811066265;MYBL2:-1.74989044641;POU6F1:-1.76720703836;NKX2-2,8:-1.77785706088;HIC1:-1.78004303523;bHLH_family:-1.833615313;NKX2-3_NKX2-5:-1.85609861311;NKX3-1:-1.86686353938;TEAD1:-1.94911984373;KLF4:-1.9537093637;GFI1:-2.03863269678;FOXQ1:-2.0410707151;LHX3,4:-2.05432271145;ADNP_IRX_SIX_ZHX:-2.07519816418;HAND1,2:-2.20053751181;NRF1:-2.25522984359;PITX1..3:-2.30283429918;ZBTB16:-2.36000581482;GFI1B:-2.36009960536;POU1F1:-2.38906063519;ALX1:-2.40432990845;SOX17:-2.42560195282;NKX6-1,2:-2.42906304529;YY1:-2.4968046654;ZNF143:-2.56385147039;EVI1:-2.57491664199;CDC5L:-2.80297619677;NKX3-2:-2.87453752984;UFEwm:-2.8962959827;TOPORS:-2.93971331238;ARID5B:-2.95935256034;HOX{A4,D4}:-3.08809249976;AIRE:-3.15105574058;ONECUT1,2:-3.15462478093;TEF:-3.29397763921;POU3F1..4:-3.79328052392
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12241-129G9;search_select_hide=table117:FF:12241-129G9
 }}

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FF:12241-129G9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:36, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0