Personal tools

FF:12214-129D9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013690
|DRA_sample_Accession=RNA-Seq@SAMD00013690
|accession_numbers=CAGE;DRX008057;DRR008929;DRZ000354;DRZ001739!RNA-Seq;DRX012346;DRR013794;DRZ002995;
|accession_numbers=CAGE;DRX008057;DRR008929;DRZ000354;DRZ001739;DRZ011704;DRZ013089!RNA-Seq;DRX012346;DRR013794;DRZ002995;
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
Line 42: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation3.CNhs12188.12214-129D9.hg38.nobarcode.ctss.bed.gz
|id=FF:12214-129D9
|id=FF:12214-129D9
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12188
|library_id=CNhs12188!RDhi10012
|library_id_phase_based=2:CNhs12188
|library_id_phase_based=2:CNhs12188
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12214
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12214
|name=CD19+ B Cells (pluriselect), donor090612, donation3
|name=CD19+ B Cells (pluriselect), donor090612, donation3
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,1.09512208416994,0,0,0,0,0,0.130618476572201,0.290936506658587,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,-0.153323010348428,0,0,0,0,0.586830403682648,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.001569294148453,0,0,0,0,0,0,0,0,0.121253232216459,0,0,0,0,0,-0.0499632213353613,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0.145468253329294,0,0.290936506658587,0,0,0,0,0,0,0,0,0,-0.0718919953399513,-0.0558962146341652,0.145468253329294,0,0,-0.19754541390633,-0.211197402695869,0,0,0,0,0.192901155420881,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0490946594068325,0,0,0,-0.21690115973835,-0.515941163000735,0,0,0,0,0,0
|repeat_enrich_byfamily=0,1.09512208416994,0,0,0,0,0,0.130618476572201,0.290936506658587,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,-0.153323010348428,0,0,0,0,0.586830403682648,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.001569294148453,0,0,0,0,0,0,0,0,0.121253232216459,0,0,0,0,0,-0.0499632213353613,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0.145468253329294,0,0.290936506658587,0,0,0,0,0,0,0,0,0,-0.0718919953399513,-0.0558962146341652,0.145468253329294,0,0,-0.19754541390633,-0.211197402695869,0,0,0,0,0.192901155420881,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0490946594068325,0,0,0,-0.21690115973835,-0.515941163000735,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.192901155420881,0,0,0.290936506658587,0,0,0.290936506658587,0,0,0,0,0,-0.247178875285564,0,-0.183149712093421,0.320095315280143,0,0.290936506658587,-0.133863885068246,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.107032812896777,0,-0.120879483793741,-0.0827201683234173,0,-0.607873103574929,0.244131847766207,0,0,0,-0.318298748299429,-0.727442406734301,0,0.290936506658587,-0.121779851751874,-0.0358813652313656,0,0,-0.391044581551635,0,-0.0737235477335119,-0.248868050382253,0,-0.130192540911805,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0360520900203819,0,0,0,-0.0739148182245154,0.126594746029659,0,-0.0548047173841698,-0.373286155956567,-0.319662220610807,0.0690134169091855,0.136298353518007,0,0.284440676672735,-0.241925073548096,-0.435816820247587,-0.116877266157764,-0.147401849371139,-0.189981719549847,0,-0.301315821626004,-0.786272629114012,-0.244205207693025,0.0288770750303657,-0.064518862857485,-1.2314085082871,0.0340421292692996,0,0,-0.0775089264793031,-0.0824379196380288,0,-0.0546894411667078,0.0967156892058748,-0.153682949143176,-0.67098743647571,-0.736032730535128,-0.405759963977936,0.029346078797841,-0.0395325284566706,-0.457436452896595,-0.141144893349156,-0.4215723249037,0,0,-0.0669305357318353,-0.0274552921883567,-0.199081703424674,0.64359967868054,-0.062707931346577,-0.0203670040073657,-0.0683442610773682,0,-0.594950544049256,0.0517126621033099,0,-0.0652098220372233,-0.578777230871412,0,0,0.290936506658587,0,0,0.098122884142245,0.85585773561953,0.790007197995362,0,0.0125842715871734,0,0.332426845577024,0,-0.0827486308191896,0.0237839744678796,-0.298074152361292,-0.292633804596236,0,-0.161173383330512,-0.109831465265465,-0.164990696339003,-0.422394805391737,-0.0584468268118252,-0.0477660661763306,0.119267884133889,-0.19754541390633,-0.788939864790226,-0.152805293764111,-0.0881268324752877,-0.210162025788965,-0.0558962146341652,-0.679498131621524,-0.146891224169814,-0.202931882940104,0,0.0570568167896461,0,0.089493319677765,0,0.462242955037536,-0.249497244814653,1.08494868041721,-0.0963612859239107,0,-0.257759274409408,0.33906132027922,0,-0.27238437317198,0,0,-0.150367083334639,-0.697695966512583,0.543526773877218,0.154425745162129,0,-0.790080158389657,0,0,-0.238353585126982,0.0554604688941983,0,-0.432035078618461,-0.609202914213396,-0.604216041195295,0.174965433223653,0,0,-0.645700337992725,0,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,0.210284116316859,-0.109030561298856,-0.108622809454255,0,0,-0.177527765965176,0.827648535884215,-0.276729749119636,0,0,-0.10441304326953,0,0,0.3413529337997,0,-0.173129461088452,0,0,0,0.145468253329294,0.146370429486204,0,0,-0.0394079518027182,0.2319970734662,0,-0.187188455876173,0,0,0,0,0,0,0,0,-1.59233083881968,-0.174255331009904,-0.12301741567642,0,0,0,0,-0.215723402553475,0.479469305504677,0.290936506658587,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.145468253329294,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.32134426397826,0,0,-0.63193017338638,0,-0.183169935249324,-0.0815818795468414,0,-0.0076383516644837,0.073544104448191,-1.30962034064846,0,0,-0.261347131789888,0,0,-0.054284979349579,-0.0823702229656663,0,0,0,0,0,0,0,0,0.0766219942588314,0,0,0,0,0,0,0,0,0,0,0,0.0776823694774209,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.153835587144546,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0.290936506658587,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,1.09512208416994,0,0,0,-0.123319086035448,-0.964094482888362,0,0,0,0,0,0.290936506658587,0,-0.27483329820609,0,0,0,0,1.46827102744722,0,0,0,-0.104796384789156,0,0.130618476572201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,-0.165292576443048,-0.0247755787802223,-0.28720751597291,-0.00950358410373964,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.062355117924397,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.968604762028741,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.165296551760739,0,0,0,-0.054385572482455,0,0,-0.00821609987139893,0,-0.0667773874189013,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0581815908532204,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277144493368503,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0562700082982235,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.172560225393661,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0.290936506658587,0,0,0,0,0,0,0,0,0.242506464432918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,-0.235916001742064,-0.515941163000735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19283696597757,0,0,0.88526939106901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202108306529132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586830403682648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0.098189318813665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.168240509661586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0.113751667280911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01538008550496,0,0,0,0,0.6827058675994,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490595158149098,0,0,0.544542935205532,0,-0.21829809262267,-0.146792813910893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.137338502423895,0,0,0,0,0,0,0.761196042578936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183538362480649,0,0,0.698047395647923,0,0,0.06420067708387,0,0,0,0,0,0.411837508592349,0.949499637640483,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,1.1732158220188,0,-0.087899747691837,0,0,-0.656552341290185,0,0,0,-0.0959594073735869
|repeat_enrich_byname=0,0,0,0,0.192901155420881,0,0,0.290936506658587,0,0,0.290936506658587,0,0,0,0,0,-0.247178875285564,0,-0.183149712093421,0.320095315280143,0,0.290936506658587,-0.133863885068246,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.107032812896777,0,-0.120879483793741,-0.0827201683234173,0,-0.607873103574929,0.244131847766207,0,0,0,-0.318298748299429,-0.727442406734301,0,0.290936506658587,-0.121779851751874,-0.0358813652313656,0,0,-0.391044581551635,0,-0.0737235477335119,-0.248868050382253,0,-0.130192540911805,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0360520900203819,0,0,0,-0.0739148182245154,0.126594746029659,0,-0.0548047173841698,-0.373286155956567,-0.319662220610807,0.0690134169091855,0.136298353518007,0,0.284440676672735,-0.241925073548096,-0.435816820247587,-0.116877266157764,-0.147401849371139,-0.189981719549847,0,-0.301315821626004,-0.786272629114012,-0.244205207693025,0.0288770750303657,-0.064518862857485,-1.2314085082871,0.0340421292692996,0,0,-0.0775089264793031,-0.0824379196380288,0,-0.0546894411667078,0.0967156892058748,-0.153682949143176,-0.67098743647571,-0.736032730535128,-0.405759963977936,0.029346078797841,-0.0395325284566706,-0.457436452896595,-0.141144893349156,-0.4215723249037,0,0,-0.0669305357318353,-0.0274552921883567,-0.199081703424674,0.64359967868054,-0.062707931346577,-0.0203670040073657,-0.0683442610773682,0,-0.594950544049256,0.0517126621033099,0,-0.0652098220372233,-0.578777230871412,0,0,0.290936506658587,0,0,0.098122884142245,0.85585773561953,0.790007197995362,0,0.0125842715871734,0,0.332426845577024,0,-0.0827486308191896,0.0237839744678796,-0.298074152361292,-0.292633804596236,0,-0.161173383330512,-0.109831465265465,-0.164990696339003,-0.422394805391737,-0.0584468268118252,-0.0477660661763306,0.119267884133889,-0.19754541390633,-0.788939864790226,-0.152805293764111,-0.0881268324752877,-0.210162025788965,-0.0558962146341652,-0.679498131621524,-0.146891224169814,-0.202931882940104,0,0.0570568167896461,0,0.089493319677765,0,0.462242955037536,-0.249497244814653,1.08494868041721,-0.0963612859239107,0,-0.257759274409408,0.33906132027922,0,-0.27238437317198,0,0,-0.150367083334639,-0.697695966512583,0.543526773877218,0.154425745162129,0,-0.790080158389657,0,0,-0.238353585126982,0.0554604688941983,0,-0.432035078618461,-0.609202914213396,-0.604216041195295,0.174965433223653,0,0,-0.645700337992725,0,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,0.210284116316859,-0.109030561298856,-0.108622809454255,0,0,-0.177527765965176,0.827648535884215,-0.276729749119636,0,0,-0.10441304326953,0,0,0.3413529337997,0,-0.173129461088452,0,0,0,0.145468253329294,0.146370429486204,0,0,-0.0394079518027182,0.2319970734662,0,-0.187188455876173,0,0,0,0,0,0,0,0,-1.59233083881968,-0.174255331009904,-0.12301741567642,0,0,0,0,-0.215723402553475,0.479469305504677,0.290936506658587,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.145468253329294,-0.057730457053664,-0.52308379245695,0,0,0,-0.27695440160179,0,0,0,0,0.32134426397826,0,0,-0.63193017338638,0,-0.183169935249324,-0.0815818795468414,0,-0.0076383516644837,0.073544104448191,-1.30962034064846,0,0,-0.261347131789888,0,0,-0.054284979349579,-0.0823702229656663,0,0,0,0,0,0,0,0,0.0766219942588314,0,0,0,0,0,0,0,0,0,0,0,0.0776823694774209,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.153835587144546,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0.290936506658587,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,1.09512208416994,0,0,0,-0.123319086035448,-0.964094482888362,0,0,0,0,0,0.290936506658587,0,-0.27483329820609,0,0,0,0,1.46827102744722,0,0,0,-0.104796384789156,0,0.130618476572201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,-0.165292576443048,-0.0247755787802223,-0.28720751597291,-0.00950358410373964,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.062355117924397,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.968604762028741,0,0,0,0,0,0,-0.287976840656709,-0.283220399823148,-0.165296551760739,0,0,0,-0.054385572482455,0,0,-0.00821609987139893,0,-0.0667773874189013,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0581815908532204,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277144493368503,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0562700082982235,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.172560225393661,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0.290936506658587,0,0,0,0,0,0,0,0,0.242506464432918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,-0.235916001742064,-0.515941163000735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19283696597757,0,0,0.88526939106901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202108306529132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586830403682648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0.098189318813665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.168240509661586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0.113751667280911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01538008550496,0,0,0,0,0.6827058675994,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290936506658587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490595158149098,0,0,0.544542935205532,0,-0.21829809262267,-0.146792813910893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.137338502423895,0,0,0,0,0,0,0.761196042578936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183538362480649,0,0,0.698047395647923,0,0,0.06420067708387,0,0,0,0,0,0.411837508592349,0.949499637640483,0,0,0,0,0,0.145468253329294,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,1.1732158220188,0,-0.087899747691837,0,0,-0.656552341290185,0,0,0,-0.0959594073735869
Line 92: Line 101:
|top_motifs=POU5F1:3.26385349766;POU2F1..3:3.25768328956;FOXA2:2.99347565432;TLX2:2.35874935896;ELF1,2,4:1.8673962948;PBX1:1.61680263321;FOXO1,3,4:1.46525934415;SPI1:1.41527205605;DMAP1_NCOR{1,2}_SMARC:1.41325129575;ELK1,4_GABP{A,B1}:1.36104851204;CRX:1.35993166707;IRF1,2:1.32452791988;FOX{D1,D2}:1.28042870971;SPIB:1.24115181948;PDX1:1.22489282632;FOX{F1,F2,J1}:1.20709555059;ETS1,2:1.16724520853;FOX{I1,J2}:1.14452326507;RUNX1..3:1.14441006506;RFX2..5_RFXANK_RFXAP:1.12020063339;YY1:1.04699160472;MYOD1:1.04239507687;FOXP3:1.01257961647;NFKB1_REL_RELA:1.01007630766;NANOG{mouse}:0.994034625104;PAX3,7:0.985497380756;PAX6:0.943866621563;OCT4_SOX2{dimer}:0.940786955679;ALX1:0.865203536038;LMO2:0.824860050425;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760267280655;VSX1,2:0.75113773466;ZEB1:0.683551301402;STAT1,3:0.682884328765;BPTF:0.68151320088;IRF7:0.673555355131;RORA:0.654964952803;CDX1,2,4:0.647999575976;ESR1:0.621310235411;TGIF1:0.618725125732;GATA6:0.607642834234;AIRE:0.606033246857;FOXN1:0.5816310476;CREB1:0.548690739474;NKX2-1,4:0.540209866628;ATF5_CREB3:0.530247385744;HBP1_HMGB_SSRP1_UBTF:0.523110221299;NKX6-1,2:0.492811589724;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.458911623073;LEF1_TCF7_TCF7L1,2:0.442455515699;MYB:0.415675036871;ATF2:0.409212408206;SNAI1..3:0.389192842906;ALX4:0.35562323885;ZNF143:0.343262030498;MEF2{A,B,C,D}:0.336895041689;SOX5:0.307879607851;BREu{core}:0.306380789167;PRRX1,2:0.30126427543;HMX1:0.291992476888;NR5A1,2:0.276264684039;ATF4:0.275922570333;SOX{8,9,10}:0.262357489777;GLI1..3:0.251279666825;SREBF1,2:0.207005472254;NRF1:0.20290008503;CUX2:0.173662791167;NKX2-2,8:0.162807459152;HOX{A6,A7,B6,B7}:0.107112956215;NFIX:0.102983553685;FOXL1:0.0990170635615;FOXP1:0.075770915176;EP300:0.0632004954976;PAX2:0.0149093527445;ZNF148:0.00955166006823;NFY{A,B,C}:-0.0353441255858;NFIL3:-0.037230552424;HAND1,2:-0.0695106590422;AHR_ARNT_ARNT2:-0.0781491614432;ADNP_IRX_SIX_ZHX:-0.0812875066307;HES1:-0.0887633703143;ZFP161:-0.0894881284916;GFI1:-0.106341084513;NHLH1,2:-0.142802903848;STAT5{A,B}:-0.143487966643;PAX4:-0.146298404872;T:-0.18048630647;EVI1:-0.1831688609;NFATC1..3:-0.193934187782;NANOG:-0.207097493017;TEF:-0.244739196813;AR:-0.252375408178;PRDM1:-0.254573035845;POU1F1:-0.261271468634;MAFB:-0.281931411769;HNF4A_NR2F1,2:-0.285926540967;HIF1A:-0.295260718914;E2F1..5:-0.322889349007;SPZ1:-0.334106694521;HOXA9_MEIS1:-0.358274513046;NKX2-3_NKX2-5:-0.369951260458;CEBPA,B_DDIT3:-0.371971660854;RXRA_VDR{dimer}:-0.374684967226;ZBTB16:-0.374773620485;ATF6:-0.407325624278;IKZF2:-0.418583883968;HNF1A:-0.42723615415;TFAP4:-0.432322253306;FOXQ1:-0.439565857168;RXR{A,B,G}:-0.453388362278;TAL1_TCF{3,4,12}:-0.457383993102;POU6F1:-0.472761851551;RFX1:-0.489963258082;bHLH_family:-0.490346578808;PPARG:-0.496617503311;RBPJ:-0.542273196078;FOSL2:-0.56654232119;EBF1:-0.600139172584;HOX{A4,D4}:-0.60027329077;FOS_FOS{B,L1}_JUN{B,D}:-0.600658923149;ONECUT1,2:-0.606628651171;ZNF238:-0.631840241075;SRF:-0.634753815108;JUN:-0.65295605497;NR6A1:-0.655219308342;TBP:-0.656635824289;BACH2:-0.674498208107;SOX2:-0.681440666384;DBP:-0.733857196525;CDC5L:-0.748351117322;HLF:-0.752311968985;SMAD1..7,9:-0.772488835872;EGR1..3:-0.780792918232;MYFfamily:-0.783287831572;TOPORS:-0.810735343826;NKX3-2:-0.814463990061;TFCP2:-0.837418736218;SOX17:-0.842365910395;NKX3-1:-0.876523463929;MYBL2:-0.888419460272;NR1H4:-0.89816555298;ARID5B:-0.919336224832;HOX{A5,B5}:-0.954112896275;NFE2:-0.958482368024;NFE2L2:-0.972190009501;REST:-0.97604702788;ZNF384:-0.982491093164;GFI1B:-0.995209726799;PATZ1:-1.00516709302;STAT2,4,6:-1.01579333655;MTE{core}:-1.01679155148;XCPE1{core}:-1.02048219748;EN1,2:-1.02116960835;RREB1:-1.04609406784;NR3C1:-1.04854971227;TP53:-1.18240030487;MZF1:-1.19344517727;MED-1{core}:-1.20815014263;GZF1:-1.22934430791;HMGA1,2:-1.23271669847;GATA4:-1.23370985783;LHX3,4:-1.25126828693;PITX1..3:-1.25595145414;TBX4,5:-1.25835100863;ZNF423:-1.26050367419;MTF1:-1.2722223867;MAZ:-1.28121620075;ESRRA:-1.34185689057;XBP1:-1.39805224238;HIC1:-1.43007538116;UFEwm:-1.46241219285;GCM1,2:-1.50961573194;HSF1,2:-1.51170993646;GTF2I:-1.51774991292;TFAP2B:-1.53116702014;PAX8:-1.5595570143;TEAD1:-1.5869166056;NFE2L1:-1.59882473429;PAX5:-1.60283677243;SP1:-1.63453709178;FOXD3:-1.65188753236;FOXM1:-1.65443645389;POU3F1..4:-1.70258865758;TFAP2{A,C}:-1.72791106229;TFDP1:-1.73014844612;KLF4:-1.73472119802;GTF2A1,2:-1.75396430889;ZBTB6:-1.79984198251;TLX1..3_NFIC{dimer}:-1.96336231235;IKZF1:-2.07022476474;ZIC1..3:-2.11161875079;PAX1,9:-2.70139800359
|top_motifs=POU5F1:3.26385349766;POU2F1..3:3.25768328956;FOXA2:2.99347565432;TLX2:2.35874935896;ELF1,2,4:1.8673962948;PBX1:1.61680263321;FOXO1,3,4:1.46525934415;SPI1:1.41527205605;DMAP1_NCOR{1,2}_SMARC:1.41325129575;ELK1,4_GABP{A,B1}:1.36104851204;CRX:1.35993166707;IRF1,2:1.32452791988;FOX{D1,D2}:1.28042870971;SPIB:1.24115181948;PDX1:1.22489282632;FOX{F1,F2,J1}:1.20709555059;ETS1,2:1.16724520853;FOX{I1,J2}:1.14452326507;RUNX1..3:1.14441006506;RFX2..5_RFXANK_RFXAP:1.12020063339;YY1:1.04699160472;MYOD1:1.04239507687;FOXP3:1.01257961647;NFKB1_REL_RELA:1.01007630766;NANOG{mouse}:0.994034625104;PAX3,7:0.985497380756;PAX6:0.943866621563;OCT4_SOX2{dimer}:0.940786955679;ALX1:0.865203536038;LMO2:0.824860050425;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.760267280655;VSX1,2:0.75113773466;ZEB1:0.683551301402;STAT1,3:0.682884328765;BPTF:0.68151320088;IRF7:0.673555355131;RORA:0.654964952803;CDX1,2,4:0.647999575976;ESR1:0.621310235411;TGIF1:0.618725125732;GATA6:0.607642834234;AIRE:0.606033246857;FOXN1:0.5816310476;CREB1:0.548690739474;NKX2-1,4:0.540209866628;ATF5_CREB3:0.530247385744;HBP1_HMGB_SSRP1_UBTF:0.523110221299;NKX6-1,2:0.492811589724;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.458911623073;LEF1_TCF7_TCF7L1,2:0.442455515699;MYB:0.415675036871;ATF2:0.409212408206;SNAI1..3:0.389192842906;ALX4:0.35562323885;ZNF143:0.343262030498;MEF2{A,B,C,D}:0.336895041689;SOX5:0.307879607851;BREu{core}:0.306380789167;PRRX1,2:0.30126427543;HMX1:0.291992476888;NR5A1,2:0.276264684039;ATF4:0.275922570333;SOX{8,9,10}:0.262357489777;GLI1..3:0.251279666825;SREBF1,2:0.207005472254;NRF1:0.20290008503;CUX2:0.173662791167;NKX2-2,8:0.162807459152;HOX{A6,A7,B6,B7}:0.107112956215;NFIX:0.102983553685;FOXL1:0.0990170635615;FOXP1:0.075770915176;EP300:0.0632004954976;PAX2:0.0149093527445;ZNF148:0.00955166006823;NFY{A,B,C}:-0.0353441255858;NFIL3:-0.037230552424;HAND1,2:-0.0695106590422;AHR_ARNT_ARNT2:-0.0781491614432;ADNP_IRX_SIX_ZHX:-0.0812875066307;HES1:-0.0887633703143;ZFP161:-0.0894881284916;GFI1:-0.106341084513;NHLH1,2:-0.142802903848;STAT5{A,B}:-0.143487966643;PAX4:-0.146298404872;T:-0.18048630647;EVI1:-0.1831688609;NFATC1..3:-0.193934187782;NANOG:-0.207097493017;TEF:-0.244739196813;AR:-0.252375408178;PRDM1:-0.254573035845;POU1F1:-0.261271468634;MAFB:-0.281931411769;HNF4A_NR2F1,2:-0.285926540967;HIF1A:-0.295260718914;E2F1..5:-0.322889349007;SPZ1:-0.334106694521;HOXA9_MEIS1:-0.358274513046;NKX2-3_NKX2-5:-0.369951260458;CEBPA,B_DDIT3:-0.371971660854;RXRA_VDR{dimer}:-0.374684967226;ZBTB16:-0.374773620485;ATF6:-0.407325624278;IKZF2:-0.418583883968;HNF1A:-0.42723615415;TFAP4:-0.432322253306;FOXQ1:-0.439565857168;RXR{A,B,G}:-0.453388362278;TAL1_TCF{3,4,12}:-0.457383993102;POU6F1:-0.472761851551;RFX1:-0.489963258082;bHLH_family:-0.490346578808;PPARG:-0.496617503311;RBPJ:-0.542273196078;FOSL2:-0.56654232119;EBF1:-0.600139172584;HOX{A4,D4}:-0.60027329077;FOS_FOS{B,L1}_JUN{B,D}:-0.600658923149;ONECUT1,2:-0.606628651171;ZNF238:-0.631840241075;SRF:-0.634753815108;JUN:-0.65295605497;NR6A1:-0.655219308342;TBP:-0.656635824289;BACH2:-0.674498208107;SOX2:-0.681440666384;DBP:-0.733857196525;CDC5L:-0.748351117322;HLF:-0.752311968985;SMAD1..7,9:-0.772488835872;EGR1..3:-0.780792918232;MYFfamily:-0.783287831572;TOPORS:-0.810735343826;NKX3-2:-0.814463990061;TFCP2:-0.837418736218;SOX17:-0.842365910395;NKX3-1:-0.876523463929;MYBL2:-0.888419460272;NR1H4:-0.89816555298;ARID5B:-0.919336224832;HOX{A5,B5}:-0.954112896275;NFE2:-0.958482368024;NFE2L2:-0.972190009501;REST:-0.97604702788;ZNF384:-0.982491093164;GFI1B:-0.995209726799;PATZ1:-1.00516709302;STAT2,4,6:-1.01579333655;MTE{core}:-1.01679155148;XCPE1{core}:-1.02048219748;EN1,2:-1.02116960835;RREB1:-1.04609406784;NR3C1:-1.04854971227;TP53:-1.18240030487;MZF1:-1.19344517727;MED-1{core}:-1.20815014263;GZF1:-1.22934430791;HMGA1,2:-1.23271669847;GATA4:-1.23370985783;LHX3,4:-1.25126828693;PITX1..3:-1.25595145414;TBX4,5:-1.25835100863;ZNF423:-1.26050367419;MTF1:-1.2722223867;MAZ:-1.28121620075;ESRRA:-1.34185689057;XBP1:-1.39805224238;HIC1:-1.43007538116;UFEwm:-1.46241219285;GCM1,2:-1.50961573194;HSF1,2:-1.51170993646;GTF2I:-1.51774991292;TFAP2B:-1.53116702014;PAX8:-1.5595570143;TEAD1:-1.5869166056;NFE2L1:-1.59882473429;PAX5:-1.60283677243;SP1:-1.63453709178;FOXD3:-1.65188753236;FOXM1:-1.65443645389;POU3F1..4:-1.70258865758;TFAP2{A,C}:-1.72791106229;TFDP1:-1.73014844612;KLF4:-1.73472119802;GTF2A1,2:-1.75396430889;ZBTB6:-1.79984198251;TLX1..3_NFIC{dimer}:-1.96336231235;IKZF1:-2.07022476474;ZIC1..3:-2.11161875079;PAX1,9:-2.70139800359
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12214-129D9;search_select_hide=table117:FF:12214-129D9
}}
}}

Latest revision as of 18:34, 4 June 2020

Name:CD19+ B Cells (pluriselect), donor090612, donation3
Species:Human (Homo sapiens)
Library ID:CNhs12188,RDhi10012
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013690
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12188 CAGE DRX008057 DRR008929
RDhi10012 RNA-Seq DRX012346 DRR013794
Accession ID Hg19

Library idBAMCTSS
CNhs12188 DRZ000354 DRZ001739
RDhi10012 DRZ002995
Accession ID Hg38

Library idBAMCTSS
CNhs12188 DRZ011704 DRZ013089
RDhi10012
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.201
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.291
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.299
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.295
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.291
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.683
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.457
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.45
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.261
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.525
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.291
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.602
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.233
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil1.095
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.291
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.517
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.317
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.28
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.291
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix1.06
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.761
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12188

Jaspar motifP-value
MA0002.23.6557e-6
MA0003.10.53
MA0004.10.363
MA0006.10.313
MA0007.10.677
MA0009.10.934
MA0014.10.426
MA0017.10.0369
MA0018.20.383
MA0019.10.53
MA0024.10.948
MA0025.10.51
MA0027.10.501
MA0028.12.00207e-5
MA0029.10.894
MA0030.10.0419
MA0031.10.0898
MA0035.20.268
MA0038.10.621
MA0039.20.557
MA0040.10.871
MA0041.10.0995
MA0042.10.692
MA0043.10.681
MA0046.10.849
MA0047.20.385
MA0048.10.57
MA0050.13.8851e-10
MA0051.15.41444e-5
MA0052.10.194
MA0055.10.326
MA0057.10.826
MA0058.10.214
MA0059.10.201
MA0060.10.903
MA0061.16.24792e-5
MA0062.24.08004e-15
MA0065.20.0328
MA0066.10.34
MA0067.10.474
MA0068.10.38
MA0069.10.469
MA0070.10.383
MA0071.10.676
MA0072.10.729
MA0073.10.652
MA0074.10.734
MA0076.12.68336e-8
MA0077.10.279
MA0078.10.766
MA0079.20.489
MA0080.21.39282e-11
MA0081.14.95923e-4
MA0083.10.143
MA0084.10.366
MA0087.10.349
MA0088.10.101
MA0090.11.77186e-4
MA0091.10.595
MA0092.10.668
MA0093.10.438
MA0099.20.00246
MA0100.10.259
MA0101.10.00626
MA0102.20.534
MA0103.10.00811
MA0104.20.089
MA0105.11.2206e-7
MA0106.10.342
MA0107.10.00308
MA0108.23.37733e-7
MA0111.10.395
MA0112.20.0429
MA0113.10.828
MA0114.10.103
MA0115.10.382
MA0116.12.80284e-5
MA0117.10.473
MA0119.10.447
MA0122.10.257
MA0124.10.878
MA0125.10.649
MA0131.10.0838
MA0135.10.0489
MA0136.11.84816e-17
MA0137.20.606
MA0138.20.61
MA0139.10.203
MA0140.10.0786
MA0141.10.842
MA0142.10.125
MA0143.10.965
MA0144.10.939
MA0145.10.742
MA0146.10.37
MA0147.10.0795
MA0148.10.812
MA0149.10.0853
MA0150.10.602
MA0152.10.413
MA0153.10.125
MA0154.15.93054e-4
MA0155.10.879
MA0156.16.902e-15
MA0157.10.0725
MA0159.10.0293
MA0160.10.524
MA0162.10.893
MA0163.19.1666e-9
MA0164.10.95
MA0258.10.155
MA0259.10.368



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12188

Novel motifP-value
10.121
100.0398
1000.609
1010.5
1020.993
1030.125
1040.177
1050.323
1060.652
1070.227
1080.229
1090.111
110.21
1100.16
1110.288
1120.252
1130.0347
1140.531
1150.867
1160.71
1170.00148
1180.171
1190.721
120.998
1200.546
1210.424
1220.311
1230.236
1240.114
1250.37
1260.411
1270.598
1280.472
1290.822
130.428
1300.565
1310.58
1320.351
1330.0118
1340.772
1350.63
1360.601
1370.129
1380.614
1390.158
140.369
1400.973
1410.633
1420.655
1430.0282
1440.714
1450.483
1460.124
1470.105
1480.108
1490.445
150.128
1500.739
1510.728
1520.484
1530.697
1540.852
1550.00441
1560.293
1570.26
1580.158
1590.137
160.948
1600.352
1610.11
1620.849
1630.334
1640.435
1650.203
1660.802
1670.144
1680.127
1690.562
170.722
180.451
190.675
20.81
200.593
210.87
220.782
230.695
240.443
250.0152
260.192
270.205
280.477
290.0748
30.0689
300.38
310.768
320.33
330.467
340.892
350.139
360.0226
370.159
380.594
390.481
40.582
400.185
410.138
420.114
430.162
440.484
450.945
460.188
470.124
480.196
490.12
50.406
500.855
510.486
520.442
530.478
540.784
550.11
560.678
570.504
580.0218
590.32
60.77
600.444
610.0225
620.0188
630.748
640.388
650.865
660.848
670.638
680.278
690.737
70.0718
700.189
710.0381
720.0201
730.58
740.258
750.0141
760.0754
770.655
780.15
790.373
80.659
800.00334
810.233
820.113
830.839
840.336
850.972
860.0931
870.222
880.903
890.648
90.393
900.0289
910.637
920.755
930.891
940.0578
950.0103
960.438
970.495
980.211
990.0455



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12188


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:12214-129D9&oldid=4576950"