FF:12204-129C8: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090612, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12183,RDhi10010
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013688

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12183		CAGE		DRX008055		DRR008927
RDhi10010		RNA-Seq		DRX012344		DRR013792

Accession ID Hg19

Library id		BAM		CTSS
CNhs12183		DRZ000352		DRZ001737
RDhi10010		DRZ002993

Accession ID Hg38

Library id		BAM		CTSS
CNhs12183		DRZ011702		DRZ013087
RDhi10010

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0859
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.197
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.332
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.32
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.435
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.501
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.588
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.419
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.17
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.491
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.197
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0937
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.552
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.123
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.928
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.28
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.438
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.294
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.197
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.197
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.055
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.751
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12183

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.17423e-5
MA0003.1	MA0003.1	0.645
MA0004.1	MA0004.1	0.487
MA0006.1	MA0006.1	0.437
MA0007.1	MA0007.1	0.725
MA0009.1	MA0009.1	0.691
MA0014.1	MA0014.1	0.552
MA0017.1	MA0017.1	0.119
MA0018.2	MA0018.2	0.337
MA0019.1	MA0019.1	0.896
MA0024.1	MA0024.1	0.746
MA0025.1	MA0025.1	0.898
MA0027.1	MA0027.1	0.54
MA0028.1	MA0028.1	1.9634e-6
MA0029.1	MA0029.1	0.383
MA0030.1	MA0030.1	0.0137
MA0031.1	MA0031.1	0.0236
MA0035.2	MA0035.2	0.279
MA0038.1	MA0038.1	0.604
MA0039.2	MA0039.2	0.404
MA0040.1	MA0040.1	0.828
MA0041.1	MA0041.1	0.187
MA0042.1	MA0042.1	0.824
MA0043.1	MA0043.1	0.367
MA0046.1	MA0046.1	0.667
MA0047.2	MA0047.2	0.336
MA0048.1	MA0048.1	0.408
MA0050.1	MA0050.1	1.16501e-11
MA0051.1	MA0051.1	7.27103e-6
MA0052.1	MA0052.1	0.133
MA0055.1	MA0055.1	0.454
MA0057.1	MA0057.1	0.729
MA0058.1	MA0058.1	0.291
MA0059.1	MA0059.1	0.387
MA0060.1	MA0060.1	0.759
MA0061.1	MA0061.1	1.07739e-5
MA0062.2	MA0062.2	5.52484e-19
MA0065.2	MA0065.2	0.0855
MA0066.1	MA0066.1	0.585
MA0067.1	MA0067.1	0.341
MA0068.1	MA0068.1	0.366
MA0069.1	MA0069.1	0.382
MA0070.1	MA0070.1	0.462
MA0071.1	MA0071.1	0.757
MA0072.1	MA0072.1	0.633
MA0073.1	MA0073.1	0.559
MA0074.1	MA0074.1	0.727
MA0076.1	MA0076.1	1.84616e-11
MA0077.1	MA0077.1	0.29
MA0078.1	MA0078.1	0.667
MA0079.2	MA0079.2	0.574
MA0080.2	MA0080.2	4.08716e-12
MA0081.1	MA0081.1	2.09329e-4
MA0083.1	MA0083.1	0.215
MA0084.1	MA0084.1	0.39
MA0087.1	MA0087.1	0.298
MA0088.1	MA0088.1	0.0863
MA0090.1	MA0090.1	6.51167e-5
MA0091.1	MA0091.1	0.76
MA0092.1	MA0092.1	0.72
MA0093.1	MA0093.1	0.544
MA0099.2	MA0099.2	1.73585e-4
MA0100.1	MA0100.1	0.245
MA0101.1	MA0101.1	0.00191
MA0102.2	MA0102.2	0.288
MA0103.1	MA0103.1	0.0119
MA0104.2	MA0104.2	0.117
MA0105.1	MA0105.1	2.20053e-7
MA0106.1	MA0106.1	0.314
MA0107.1	MA0107.1	0.00142
MA0108.2	MA0108.2	3.96136e-7
MA0111.1	MA0111.1	0.477
MA0112.2	MA0112.2	0.0861
MA0113.1	MA0113.1	0.94
MA0114.1	MA0114.1	0.22
MA0115.1	MA0115.1	0.379
MA0116.1	MA0116.1	3.57123e-5
MA0117.1	MA0117.1	0.594
MA0119.1	MA0119.1	0.36
MA0122.1	MA0122.1	0.183
MA0124.1	MA0124.1	0.538
MA0125.1	MA0125.1	0.741
MA0131.1	MA0131.1	0.0464
MA0135.1	MA0135.1	0.0566
MA0136.1	MA0136.1	2.03528e-19
MA0137.2	MA0137.2	0.445
MA0138.2	MA0138.2	0.773
MA0139.1	MA0139.1	0.265
MA0140.1	MA0140.1	0.062
MA0141.1	MA0141.1	0.888
MA0142.1	MA0142.1	0.175
MA0143.1	MA0143.1	0.895
MA0144.1	MA0144.1	0.909
MA0145.1	MA0145.1	0.783
MA0146.1	MA0146.1	0.267
MA0147.1	MA0147.1	0.142
MA0148.1	MA0148.1	0.798
MA0149.1	MA0149.1	0.18
MA0150.1	MA0150.1	0.529
MA0152.1	MA0152.1	0.281
MA0153.1	MA0153.1	0.0103
MA0154.1	MA0154.1	9.65775e-4
MA0155.1	MA0155.1	0.677
MA0156.1	MA0156.1	3.29066e-17
MA0157.1	MA0157.1	0.0869
MA0159.1	MA0159.1	0.0494
MA0160.1	MA0160.1	0.429
MA0162.1	MA0162.1	0.975
MA0163.1	MA0163.1	7.99887e-9
MA0164.1	MA0164.1	0.843
MA0258.1	MA0258.1	0.213
MA0259.1	MA0259.1	0.517

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12183

Novel motif	Logo	P-value
1	1	0.151
10	10	0.0358
100	100	0.521
101	101	0.305
102	102	0.887
103	103	0.0766
104	104	0.158
105	105	0.405
106	106	0.59
107	107	0.261
108	108	0.239
109	109	0.111
11	11	0.127
110	110	0.172
111	111	0.167
112	112	0.158
113	113	0.0104
114	114	0.435
115	115	0.842
116	116	0.618
117	117	0.00104
118	118	0.19
119	119	0.848
12	12	0.808
120	120	0.629
121	121	0.412
122	122	0.444
123	123	0.093
124	124	0.109
125	125	0.139
126	126	0.114
127	127	0.644
128	128	0.43
129	129	0.759
13	13	0.514
130	130	0.382
131	131	0.488
132	132	0.263
133	133	0.00816
134	134	0.584
135	135	0.816
136	136	0.507
137	137	0.0475
138	138	0.43
139	139	0.0905
14	14	0.299
140	140	0.484
141	141	0.252
142	142	0.509
143	143	0.0673
144	144	0.723
145	145	0.297
146	146	0.128
147	147	0.0582
148	148	0.663
149	149	0.474
15	15	0.158
150	150	0.556
151	151	0.852
152	152	0.575
153	153	0.655
154	154	0.857
155	155	0.0168
156	156	0.29
157	157	0.162
158	158	0.0954
159	159	0.179
16	16	0.825
160	160	0.532
161	161	0.045
162	162	0.556
163	163	0.268
164	164	0.499
165	165	0.28
166	166	0.539
167	167	0.12
168	168	0.203
169	169	0.599
17	17	0.984
18	18	0.814
19	19	0.649
2	2	0.848
20	20	0.606
21	21	0.758
22	22	0.765
23	23	0.553
24	24	0.33
25	25	0.0264
26	26	0.261
27	27	0.246
28	28	0.303
29	29	0.111
3	3	0.0874
30	30	0.346
31	31	0.744
32	32	0.122
33	33	0.36
34	34	0.847
35	35	0.194
36	36	0.0371
37	37	0.119
38	38	0.396
39	39	0.451
4	4	0.704
40	40	0.177
41	41	0.145
42	42	0.139
43	43	0.201
44	44	0.57
45	45	0.926
46	46	0.237
47	47	0.0829
48	48	0.152
49	49	0.183
5	5	0.477
50	50	0.979
51	51	0.505
52	52	0.481
53	53	0.397
54	54	0.973
55	55	0.106
56	56	0.676
57	57	0.53
58	58	0.0202
59	59	0.352
6	6	0.863
60	60	0.519
61	61	0.0352
62	62	0.0312
63	63	0.766
64	64	0.36
65	65	0.862
66	66	0.79
67	67	0.402
68	68	0.237
69	69	0.585
7	7	0.126
70	70	0.228
71	71	0.0561
72	72	0.0566
73	73	0.527
74	74	0.469
75	75	0.0111
76	76	0.0368
77	77	0.535
78	78	0.27
79	79	0.223
8	8	0.848
80	80	0.013
81	81	0.262
82	82	0.14
83	83	0.866
84	84	0.286
85	85	0.819
86	86	0.132
87	87	0.0879
88	88	0.669
89	89	0.912
9	9	0.43
90	90	0.0148
91	91	0.718
92	92	0.562
93	93	0.772
94	94	0.08
95	95	0.0109
96	96	0.465
97	97	0.464
98	98	0.117
99	99	0.0182

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12183

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007948!RNA-Seq@DRS012113
+|DRA_sample_Accession=RNA-Seq@SAMD00013688
-|accession_numbers=CAGE;DRX008055;DRR008927;DRZ000352;DRZ001737!RNA-Seq;DRX012344;DRR013792;DRZ002993;NA
+|accession_numbers=CAGE;DRX008055;DRR008927;DRZ000352;DRZ001737;DRZ011702;DRZ013087!RNA-Seq;DRX012344;DRR013792;DRZ002993;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.54!344.85!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.45!283.93!AFF3;;chr19:50922187..50922204,+!p1@SPIB!2.38!240.82!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!2.35!225.30!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.08!119.55!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.06!113.23!AFF3;;chr11:47400078..47400106,-!p1@SPI1!2.05!110.93!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.02!228.18!BACH2;;chr2:231090433..231090469,+!p1@SP140!2.00!98.86!SP140;;chr2:231090471..231090504,+!p2@SP140!1.95!88.51!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.93!84.49!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.83!490.26!MEF2C;;chr3:71355163..71355209,-!p5@FOXP1!1.82!89.09!FOXP1;;chr2:100758991..100759009,-!p3@AFF3!1.82!65.52!AFF3;;chr8:86099884..86099918,+!p4@E2F5!1.79!60.35!E2F5;;chr6:91006575..91006602,-!p2@BACH2!1.73!77.02!BACH2;;chr3:32023232..32023273,+!p1@ZNF860!1.72!72.99!ZNF860;;chr2:68592406..68592424,+!p1@PLEK!1.72!51.15!PLEK;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.68!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.61!117.82!BCL11A;;chr7:50344251..50344288,+!p3@IKZF1!1.60!39.08!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.60!38.51!IKZF3;;chr19:16435625..16435682,+!p1@KLF2!1.54!1015.59!KLF2;;chr20:56195474..56195506,-!p1@ZBP1!1.52!32.19!ZBP1;;chr5:158526756..158526797,-!p3@EBF1!1.47!28.74!EBF1;;chr19:13213662..13213686,-!p1@LYL1!1.42!37.36!LYL1;;chr4:57522513..57522548,-!p4@HOPX!1.42!25.29!HOPX;;chr13:41593425..41593480,-!p1@ELF1!1.41!150.59!ELF1;;chr8:86089627..86089653,+!p3@E2F5!1.41!28.16!E2F5;;chr7:50344289..50344323,+!p1@IKZF1!1.41!24.71!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.40!24.14!BCL11A;;chr3:71409904..71409927,-!p46@FOXP1!1.35!21.27!FOXP1;;chr7:50348268..50348366,+!p4@IKZF1!1.34!20.69!IKZF1;;chr1:25256756..25256774,-!p1@RUNX3!1.31!36.21!RUNX3;;chr2:60778035..60778060,-!p4@BCL11A!1.31!22.99!BCL11A;;chr8:86089531..86089544,+!p7@E2F5!1.30!18.97!E2F5;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.69!HHEX;;chr18:52989031..52989079,-!p2@TCF4!1.29!43.11!TCF4;;chr14:69262947..69262986,-!p3@ZFP36L1!1.29!22.42!ZFP36L1;;chr5:88179017..88179046,-!p2@MEF2C!1.28!71.84!MEF2C;;chr19:13213704..13213726,-!p3@LYL1!1.27!22.99!LYL1;;chr4:185395590..185395627,-!p3@IRF2!1.26!21.27!IRF2;;chr17:38020516..38020544,-!p5@IKZF3!1.26!17.24!IKZF3;;chr5:88120151..88120177,-!p6@MEF2C!1.26!17.24!MEF2C;;chr17:37934204..37934241,-!p3@IKZF3!1.23!16.09!IKZF3;;chr2:68592394..68592405,+!p2@PLEK!1.23!16.09!PLEK;;chr3:71631151..71631194,-!p15@FOXP1!1.20!16.67!FOXP1;;chr10:51585449..51585487,+!p6@NCOA4!1.20!14.94!NCOA4;;chr19:42636586..42636607,-!p1@POU2F2!1.19!39.66!POU2F2;;chr4:185395633..185395651,-!p2@IRF2!1.18!22.42!IRF2;;chr7:64838786..64838809,+!p2@ZNF92!1.17!78.17!ZNF92;;chr6:91006503..91006517,-!p3@BACH2!1.17!13.79!BACH2;;chr7:63505799..63505904,+!p1@ZNF727!1.17!13.79!ZNF727;;chr7:77469439..77469459,+!p6@PHTF2!1.17!13.79!PHTF2;;chr17:38020481..38020506,-!p7@IKZF3!1.17!13.79!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.15!156.33!FLI1;;chr20:50159198..50159299,-!p1@NFATC2!1.15!18.97!NFATC2;;chr2:231090344..231090361,-!p3@SP110!1.15!13.22!SP110;;chr3:18487057..18487105,-!p4@SATB1!1.15!13.22!SATB1;;chr19:58220517..58220583,-!p1@ZNF154!1.14!40.23!ZNF154;;chr3:18486354..18486377,-!p2@SATB1!1.14!16.09!SATB1;;chr14:75988771..75988826,+!p1@BATF!1.12!16.09!BATF;;chr16:85936412..85936431,+!p2@IRF8!1.10!11.50!IRF8;;chr5:158526709..158526741,-!p7@EBF1!1.10!11.50!EBF1;;chr9:37034186..37034216,-!p2@PAX5!1.10!11.50!PAX5;;chr9:117150254..117150271,-!p1@AKNA!1.09!31.04!AKNA;;chr7:77428066..77428132,+!p2@PHTF2!1.08!71.27!PHTF2;;chrX:106960180..106960197,-!p2@TSC22D3!1.08!42.53!TSC22D3;;chrX:101186981..101187030,-!p1@ZMAT1!1.08!36.21!ZMAT1;;chr19:36391434..36391450,-!p1@NFKBID!1.08!21.84!NFKBID;;chr19:36204309..36204335,+!p1@ZBTB32!1.08!10.92!ZBTB32;;chr9:37027156..37027193,-!p4@PAX5!1.08!10.92!PAX5;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!13.22!PLAGL1;;chr1:151319654..151319698,-!p2@RFX5!1.05!22.42!RFX5;;chr7:64126535..64126559,+!p2@ZNF107!1.05!21.84!ZNF107;;chr10:94451574..94451587,+!p6@HHEX!1.05!10.35!HHEX;;chr2:100759060..100759073,-!p8@AFF3!1.05!10.35!AFF3;;chr10:104154246..104154347,+!p3@NFKB2!1.04!62.07!NFKB2;;chr2:145277640..145277771,-!p1@ZEB2!1.03!132.19!ZEB2;;chr5:88179195..88179224,-!p3@MEF2C!1.03!15.52!MEF2C;;chr9:37003148..37003152,-!p5@PAX5!1.03!9.77!PAX5;;chr2:61108695..61108753,+!p1@REL!1.02!66.10!REL;;chrX:106960221..106960236,-!p3@TSC22D3!1.02!26.44!TSC22D3;;chr10:94449675..94449694,+!p2@HHEX!1.02!25.86!HHEX;;chr16:3313791..3313834,+!p2@ZNF263!1.02!21.27!ZNF263;;chr19:45579725..45579743,-!p1@ZNF296!1.01!41.96!ZNF296;;chr19:19779619..19779670,+!p1@ZNF101!1.01!26.44!ZNF101;;chr17:38020607..38020621,-!p9@IKZF3!1.01!9.20!IKZF3;;chr7:50343895..50343936,+!p5@IKZF1!1.01!9.20!IKZF1;;chr4:81104895..81104920,+!p2@PRDM8!0.99!13.22!PRDM8;;chr14:64971288..64971316,-!p2@ZBTB25!0.98!27.01!ZBTB25;;chrX:56258844..56258882,+!p1@KLF8!0.98!12.07!KLF8;;chr11:47400062..47400077,-!p2@SPI1!0.98!8.62!SPI1;;chr17:45810594..45810608,+!p1@TBX21!0.98!8.62!TBX21;;chr3:71179699..71179744,-!p2@FOXP1!0.97!63.80!FOXP1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.96!10.35!L3MBTL4;;chr6:41700616..41700664,-!p8@TFEB!0.96!8.05!TFEB;;chr20:46130672..46130686,+!p2@NCOA3!0.95!36.78!NCOA3;;chr2:231084659..231084721,-!p1@SP110!0.94!185.07!SP110;;chr11:128392273..128392308,-!p2@ETS1!0.94!33.91!ETS1;;chr7:50344144..50344157,+!p6@IKZF1!0.93!7.47!IKZF1;;chr17:37934188..37934202,-!p8@IKZF3!0.93!7.47!IKZF3;;chr17:56565257..56565283,-!p2@HSF5!0.93!7.47!HSF5;;chr2:100759076..100759088,-!p10@AFF3!0.93!7.47!AFF3;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.47!KLF8;;chr19:20748574..20748599,-!p1@ZNF737!0.92!45.41!ZNF737;;chr16:68119324..68119364,+!p1@NFATC3!0.92!33.91!NFATC3;;chr8:81397820..81397836,+!p2@ZBTB10!0.92!9.20!ZBTB10;;chrX:131624056..131624069,-!p2@MBNL3!0.91!9.77!MBNL3;;chr2:208031542..208031595,-!p2@KLF7!0.90!51.73!KLF7;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.86!RUNX1;;chr3:71630844..71630862,-!p40@FOXP1!0.90!6.90!FOXP1;;chr17:37934365..37934387,-!p2@IKZF3!0.90!6.90!IKZF3;;chrX:106960285..106960299,-!p1@TSC22D3!0.89!191.39!TSC22D3;;chr2:61108650..61108687,+!p2@REL!0.89!34.49!REL;;chrX:106960249..106960260,-!p5@TSC22D3!0.89!10.92!TSC22D3;;chr19:38085768..38085821,+!p1@ZNF540!0.89!10.35!ZNF540;;chr1:14026671..14026705,+!p2@PRDM2!0.88!41.96!PRDM2;;chr2:208394817..208394834,+!p3@CREB1!0.88!27.59!CREB1;;chr6:157098579..157098634,+!p4@ARID1B!0.88!15.52!ARID1B;;chr1:8763463..8763499,-!p6@RERE!0.87!18.39!RERE;;chr10:64576105..64576133,-!p1@EGR2!0.87!13.79!EGR2;;chr19:22235279..22235301,+!p1@ZNF257!0.87!12.64!ZNF257;;chr19:13213954..13214021,-!p4@LYL1!0.86!6.32!LYL1;;chr1:167298300..167298319,+!p2@POU2F1!0.86!6.32!POU2F1;;chr7:128577972..128578047,+!p1@IRF5!0.85!9.77!IRF5;;chr11:128392085..128392232,-!p1@ETS1!0.84!213.23!ETS1;;chr1:158979686..158979745,+!p1@IFI16!0.84!209.78!IFI16;;chr3:129158768..129158819,-!p1@MBD4!0.84!96.56!MBD4;;chr9:3525727..3525828,-!p2@RFX3!0.84!16.09!RFX3;;chr18:42260030..42260055,+!p3@SETBP1!0.84!7.47!SETBP1;;chr7:64126503..64126528,+!p1@ZNF107!0.83!43.68!ZNF107;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.29!MBNL3;;chr19:11959532..11959593,+!p1@ZNF439!0.83!23.56!ZNF439;;chr1:91487836..91487854,-!p3@ZNF644!0.83!13.79!ZNF644;;chr8:81397876..81397898,+!p5@ZBTB10!0.83!6.90!ZBTB10;;chr19:22193731..22193751,-!p1@ZNF208!0.83!5.75!ZNF208;;chr19:47616992..47617011,-!p4@ZC3H4!0.82!12.64!ZC3H4;;chr19:37997297..37997362,+!p3@ZNF793!0.81!9.20!ZNF793;;chrX:56258811..56258838,+!p2@KLF8!0.81!7.47!KLF8;;chr8:81397846..81397860,+!p3@ZBTB10!0.81!6.90!ZBTB10;;chr8:123793860..123793921,+!p2@ZHX2!0.80!15.52!ZHX2;;chr2:178128250..178128293,-!p6@NFE2L2!0.80!14.37!NFE2L2;;chr18:42260920..42260951,+!p4@SETBP1!0.79!5.17!SETBP1;;chr1:14057463..14057496,+!p4@PRDM2!0.79!5.17!PRDM2;;chr1:158978768..158978800,+!p8@IFI16!0.79!5.17!IFI16;;chr10:51585430..51585448,+!p7@NCOA4!0.79!5.17!NCOA4;;chr7:150102756..150102772,+!p5@ZNF775!0.79!5.17!ZNF775;;chr8:86089498..86089519,+!p6@E2F5!0.79!5.17!E2F5;;chr2:231191875..231191918,+!p1@SP140L!0.78!54.03!SP140L;;chr6:109804412..109804458,-!p1@ZBTB24!0.78!48.28!ZBTB24;;chr7:21467674..21467727,+!p1@SP4!0.78!21.84!SP4;;chr19:9546177..9546224,-!p1@ZNF266!0.77!37.93!ZNF266;;chr19:58446721..58446779,-!p1@ZNF418!0.77!14.37!ZNF418;;chr13:41240737..41240787,-!p1@FOXO1!0.75!60.35!FOXO1;;chr18:52989001..52989030,-!p10@TCF4!0.75!5.17!TCF4;;chr2:97202991..97203043,+!p3@ARID5A!0.75!4.60!ARID5A;;chr3:71631248..71631268,-!p26@FOXP1!0.75!4.60!FOXP1;;chr5:158526693..158526706,-!p8@EBF1!0.75!4.60!EBF1;;chr7:115799942..115799955,-!p5@TFEC!0.75!4.60!TFEC;;chr19:21106049..21106072,+!p1@ZNF85!0.74!27.59!ZNF85;;chr6:28092375..28092412,+!p1@ZSCAN16!0.74!20.69!ZSCAN16;;chr6:106534230..106534254,+!p2@PRDM1!0.74!12.07!PRDM1;;chr7:64838754..64838778,+!p1@ZNF92!0.73!47.13!ZNF92;;chr6:41703296..41703367,-!p1@TFEB!0.73!24.71!TFEB;;chr7:64363638..64363667,+!p1@ZNF273!0.73!24.14!ZNF273;;chr19:58694742..58694800,+!p2@ZNF274!0.73!19.54!ZNF274;;chr9:117150303..117150312,-!p3@AKNA!0.73!5.75!AKNA;;chr2:231280908..231280945,+!p1@SP100!0.72!186.22!SP100;;chr6:106534192..106534224,+!p1@PRDM1!0.72!13.22!PRDM1;;chr11:128392309..128392350,-!p3@ETS1!0.72!10.92!ETS1;;chr18:52989081..52989117,-!p7@TCF4!0.72!6.90!TCF4;;chr17:46621311..46621332,-!p8@HOXB2!0.72!5.75!HOXB2;;chr19:49140609..49140643,-!p1@DBP!0.71!26.44!DBP;;chr17:4981745..4981810,+!p1@ZFP3!0.71!22.42!ZFP3;;chr19:11877838..11877915,+!p1@ZNF441!0.71!14.37!ZNF441;;chr5:88179230..88179270,-!p4@MEF2C!0.71!8.62!MEF2C;;chr20:46130619..46130664,+!p1@NCOA3!0.70!124.15!NCOA3;;chr18:77160282..77160343,+!p2@NFATC1!0.70!28.16!NFATC1;;chr19:19976714..19976729,+!p3@ZNF253!0.70!8.05!ZNF253;;chr17:37934138..37934150,-!p12@IKZF3!0.70!4.02!IKZF3;;chr18:42260861..42260882,+!p5@SETBP1!0.70!4.02!SETBP1;;chr1:14026722..14026733,+!p5@PRDM2!0.70!4.02!PRDM2;;chr3:114173720..114173794,-!p6@ZBTB20!0.70!4.02!ZBTB20;;chr3:189349162..189349207,+!p2@TP63!0.70!4.02!TP63;;chr4:57522476..57522500,-!p7@HOPX!0.70!4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12183.12204-129C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12183.12204-129C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12183.12204-129C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12183.12204-129C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation1.CNhs12183.12204-129C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:12204-129C8
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
 |library_id=CNhs12183!RDhi10010
+|library_id_phase_based=2:CNhs12183
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12204
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12204
 |name=CD19+ B Cells (pluriselect), donor090612, donation1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12183,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12204-129C8;search_select_hide=table117:FF:12204-129C8
 }}

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FF:12204-129C8: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0