FF:12156-128G5: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	Mesothelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12197
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	female
age	42 year old adult
cell type	mesothelial cell
cell line	NA
company	Zenbio
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005879

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12197		CAGE		DRX008079		DRR008951

Accession ID Hg19

Library id		BAM		CTSS
CNhs12197		DRZ000376		DRZ001761

Accession ID Hg38

Library id		BAM		CTSS
CNhs12197		DRZ011726		DRZ013111

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.211
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.322
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.323
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.449
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0.558
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.025
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0381
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.851
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.272
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.163
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12197

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.182
MA0003.1	MA0003.1	0.473
MA0004.1	MA0004.1	0.415
MA0006.1	MA0006.1	0.0678
MA0007.1	MA0007.1	0.88
MA0009.1	MA0009.1	0.36
MA0014.1	MA0014.1	0.945
MA0017.1	MA0017.1	0.7
MA0018.2	MA0018.2	0.00364
MA0019.1	MA0019.1	0.0388
MA0024.1	MA0024.1	7.1048e-13
MA0025.1	MA0025.1	0.907
MA0027.1	MA0027.1	0.899
MA0028.1	MA0028.1	0.289
MA0029.1	MA0029.1	0.176
MA0030.1	MA0030.1	0.504
MA0031.1	MA0031.1	0.905
MA0035.2	MA0035.2	0.00468
MA0038.1	MA0038.1	0.0308
MA0039.2	MA0039.2	0.489
MA0040.1	MA0040.1	0.302
MA0041.1	MA0041.1	0.253
MA0042.1	MA0042.1	0.485
MA0043.1	MA0043.1	0.218
MA0046.1	MA0046.1	0.835
MA0047.2	MA0047.2	0.888
MA0048.1	MA0048.1	0.714
MA0050.1	MA0050.1	0.0193
MA0051.1	MA0051.1	0.955
MA0052.1	MA0052.1	0.766
MA0055.1	MA0055.1	0.82
MA0057.1	MA0057.1	0.272
MA0058.1	MA0058.1	0.431
MA0059.1	MA0059.1	0.625
MA0060.1	MA0060.1	0.00383
MA0061.1	MA0061.1	0.872
MA0062.2	MA0062.2	0.127
MA0065.2	MA0065.2	0.633
MA0066.1	MA0066.1	0.193
MA0067.1	MA0067.1	0.0801
MA0068.1	MA0068.1	0.658
MA0069.1	MA0069.1	0.881
MA0070.1	MA0070.1	0.784
MA0071.1	MA0071.1	0.66
MA0072.1	MA0072.1	0.784
MA0073.1	MA0073.1	0.867
MA0074.1	MA0074.1	0.507
MA0076.1	MA0076.1	0.551
MA0077.1	MA0077.1	0.464
MA0078.1	MA0078.1	0.649
MA0079.2	MA0079.2	0.273
MA0080.2	MA0080.2	0.00216
MA0081.1	MA0081.1	0.0639
MA0083.1	MA0083.1	0.00195
MA0084.1	MA0084.1	0.663
MA0087.1	MA0087.1	0.682
MA0088.1	MA0088.1	0.592
MA0090.1	MA0090.1	4.74557e-5
MA0091.1	MA0091.1	0.886
MA0092.1	MA0092.1	0.0576
MA0093.1	MA0093.1	0.506
MA0099.2	MA0099.2	1.30331e-13
MA0100.1	MA0100.1	0.0145
MA0101.1	MA0101.1	0.939
MA0102.2	MA0102.2	0.37
MA0103.1	MA0103.1	0.963
MA0104.2	MA0104.2	0.0363
MA0105.1	MA0105.1	0.893
MA0106.1	MA0106.1	0.0532
MA0107.1	MA0107.1	0.458
MA0108.2	MA0108.2	0.00199
MA0111.1	MA0111.1	0.382
MA0112.2	MA0112.2	0.202
MA0113.1	MA0113.1	0.249
MA0114.1	MA0114.1	0.24
MA0115.1	MA0115.1	0.606
MA0116.1	MA0116.1	0.354
MA0117.1	MA0117.1	0.381
MA0119.1	MA0119.1	0.702
MA0122.1	MA0122.1	0.525
MA0124.1	MA0124.1	0.0644
MA0125.1	MA0125.1	0.365
MA0131.1	MA0131.1	0.0386
MA0135.1	MA0135.1	0.616
MA0136.1	MA0136.1	0.0514
MA0137.2	MA0137.2	0.277
MA0138.2	MA0138.2	0.107
MA0139.1	MA0139.1	0.702
MA0140.1	MA0140.1	0.0942
MA0141.1	MA0141.1	0.728
MA0142.1	MA0142.1	0.956
MA0143.1	MA0143.1	0.124
MA0144.1	MA0144.1	0.585
MA0145.1	MA0145.1	0.0461
MA0146.1	MA0146.1	0.667
MA0147.1	MA0147.1	0.0175
MA0148.1	MA0148.1	0.265
MA0149.1	MA0149.1	0.283
MA0150.1	MA0150.1	0.00291
MA0152.1	MA0152.1	0.691
MA0153.1	MA0153.1	0.0602
MA0154.1	MA0154.1	0.211
MA0155.1	MA0155.1	0.014
MA0156.1	MA0156.1	0.336
MA0157.1	MA0157.1	0.701
MA0159.1	MA0159.1	0.256
MA0160.1	MA0160.1	0.281
MA0162.1	MA0162.1	0.255
MA0163.1	MA0163.1	0.566
MA0164.1	MA0164.1	0.558
MA0258.1	MA0258.1	0.995
MA0259.1	MA0259.1	0.0382

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12197

Novel motif	Logo	P-value
1	1	0.69
10	10	0.00895
100	100	0.371
101	101	0.493
102	102	0.794
103	103	0.407
104	104	0.577
105	105	0.259
106	106	0.0332
107	107	0.0378
108	108	0.749
109	109	0.615
11	11	0.272
110	110	0.656
111	111	0.0218
112	112	0.414
113	113	0.302
114	114	0.422
115	115	0.313
116	116	0.897
117	117	0.136
118	118	0.854
119	119	0.379
12	12	0.995
120	120	0.568
121	121	0.568
122	122	0.37
123	123	1.62797e-5
124	124	0.741
125	125	0.0387
126	126	0.941
127	127	0.514
128	128	0.0925
129	129	0.0945
13	13	0.928
130	130	0.511
131	131	0.166
132	132	0.664
133	133	0.059
134	134	0.254
135	135	0.686
136	136	0.339
137	137	0.592
138	138	0.791
139	139	0.269
14	14	0.707
140	140	0.86
141	141	0.0915
142	142	0.814
143	143	0.3
144	144	0.922
145	145	0.402
146	146	0.295
147	147	0.869
148	148	0.661
149	149	0.0537
15	15	0.149
150	150	0.329
151	151	0.401
152	152	0.0101
153	153	0.929
154	154	0.34
155	155	0.0437
156	156	0.504
157	157	0.353
158	158	0.381
159	159	0.488
16	16	0.288
160	160	0.865
161	161	0.807
162	162	0.85
163	163	0.0262
164	164	0.925
165	165	0.269
166	166	0.611
167	167	0.442
168	168	0.582
169	169	0.0804
17	17	0.335
18	18	0.23
19	19	0.496
2	2	0.205
20	20	0.132
21	21	0.11
22	22	0.137
23	23	0.0383
24	24	0.359
25	25	0.316
26	26	0.354
27	27	0.116
28	28	0.5
29	29	0.911
3	3	0.969
30	30	0.135
31	31	0.26
32	32	0.348
33	33	0.984
34	34	0.388
35	35	0.787
36	36	0.463
37	37	0.162
38	38	0.762
39	39	0.463
4	4	0.649
40	40	0.944
41	41	0.441
42	42	0.825
43	43	0.242
44	44	0.792
45	45	0.028
46	46	0.625
47	47	0.838
48	48	0.654
49	49	0.356
5	5	0.66
50	50	0.995
51	51	0.637
52	52	0.144
53	53	0.632
54	54	0.315
55	55	0.0472
56	56	0.536
57	57	0.69
58	58	0.431
59	59	0.287
6	6	0.212
60	60	0.359
61	61	0.282
62	62	0.613
63	63	0.555
64	64	0.928
65	65	0.312
66	66	0.69
67	67	0.669
68	68	0.8
69	69	0.0941
7	7	0.784
70	70	0.074
71	71	0.513
72	72	0.405
73	73	0.0301
74	74	0.472
75	75	0.444
76	76	0.503
77	77	0.00753
78	78	0.894
79	79	0.458
8	8	0.441
80	80	0.204
81	81	0.63
82	82	0.261
83	83	0.235
84	84	0.991
85	85	0.215
86	86	0.937
87	87	0.119
88	88	0.788
89	89	0.0311
9	9	0.603
90	90	0.928
91	91	0.992
92	92	0.437
93	93	0.399
94	94	0.818
95	95	0.154
96	96	0.555
97	97	0.034
98	98	0.331
99	99	0.258

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12197

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000099 human mesothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000099 (human mesothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005879
+|accession_numbers=CAGE;DRX008079;DRR008951;DRZ000376;DRZ001761;DRZ011726;DRZ013111
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000222,CL:0000077
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000099
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.94!225.73!OSR1;;chr11:61520075..61520136,+!p1@C11orf9!1.72!105.46!C11orf9;;chr19:58400344..58400364,-!p2@ZNF814!1.66!64.49!ZNF814;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.38!ZBED1;;chr1:151032860..151032918,+!p1@MLLT11!1.45!312.88!MLLT11;;chr4:174451370..174451387,-!p1@HAND2!1.40!24.40!HAND2;;chr7:27183263..27183284,-!p2@HOXA5!1.36!21.79!HOXA5;;chr6:126240380..126240430,+!p2@NCOA7!1.32!50.55!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.26!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.30!27.02!GATA6;;chr8:37963466..37963506,+!p3@ASH2L!1.30!23.53!ASH2L;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.15!BMP2;;chr11:32457075..32457095,-!p1@WT1!1.27!17.43!WT1;;chr1:151032922..151032951,+!p2@MLLT11!1.23!26.15!MLLT11;;chr6:28321971..28321995,-!p1@ZNF323!1.22!15.69!ZNF323;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.69!HOXA5;;chr15:83953397..83953425,-!p1@BNC1!1.21!17.43!BNC1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.20!14.82!SEBOX;;chr16:86544113..86544145,+!p1@FOXF1!1.18!17.43!FOXF1;;chr7:27153454..27153469,-!p2@HOXA3!1.17!13.94!HOXA3;;chr3:25470156..25470227,+!p2@RARB!1.12!12.20!RARB;;chr1:151032739..151032748,+!p6@MLLT11!1.11!14.82!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.10!15.69!BHLHE41;;chr4:174450089..174450153,-!p2@HAND2!1.09!11.33!HAND2;;chr11:65686802..65686818,+!p6@DRAP1!1.06!18.30!DRAP1;;chr19:22193731..22193751,-!p1@ZNF208!1.06!10.46!ZNF208;;chr8:72756637..72756664,-!p3@MSC!1.04!11.33!MSC;;chr1:151032782..151032801,+!p4@MLLT11!1.02!19.17!MLLT11;;chr14:21566731..21566836,-!p1@ZNF219!1.01!100.23!ZNF219;;chr8:72756063..72756125,-!p1@MSC!1.00!18.30!MSC;;chr6:28321909..28321965,-!p3@ZNF323!0.99!8.72!ZNF323;;chr3:25469815..25469866,+!p3@RARB!0.99!8.72!RARB;;chr6:19837592..19837621,+!p1@ID4!0.95!49.68!ID4;;chr5:139492456..139492489,+!p7@PURA!0.95!7.84!PURA;;chr20:61051039..61051057,-!p1@GATA5!0.95!7.84!GATA5;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.84!HOXB6;;chr6:126240442..126240459,+!p4@NCOA7!0.93!9.59!NCOA7;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!20.05!ZFPM2;;chr19:47922750..47922795,-!p1@MEIS3!0.92!12.20!MEIS3;;chr10:51572339..51572376,+!p4@NCOA4!0.91!16.56!NCOA4;;chr11:46299539..46299620,+!p2@CREB3L1!0.91!12.20!CREB3L1;;chr8:72756667..72756736,-!p2@MSC!0.91!11.33!MSC;;chr6:126240356..126240379,+!p7@NCOA7!0.91!8.72!NCOA7;;chr5:172662197..172662216,-!p1@NKX2-5!0.90!6.97!NKX2-5;;chr7:27205106..27205134,-!p2@HOXA9!0.90!6.97!HOXA9;;chr9:96717629..96717644,-!p1@BARX1!0.90!6.97!BARX1;;chr8:106330696..106330719,+!p2@ZFPM2!0.89!8.72!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.73!CREB3L1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.05!ASH2L;;chr12:104531823..104531849,-!p5@NFYB!0.87!13.94!NFYB;;chr17:46687959..46688007,-!p2@HOXB7!0.86!8.72!HOXB7;;chr18:45663490..45663528,-!p2@ZBTB7C!0.85!6.10!ZBTB7C;;chr2:19558327..19558334,-!p2@OSR1!0.85!6.10!OSR1;;chr7:27183191..27183214,-!p4@HOXA5!0.85!6.10!HOXA5;;chr12:26277956..26277980,-!p1@BHLHE41!0.84!22.66!BHLHE41;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.73!NCOA4;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.15!DRAP1;;chr19:58400372..58400411,-!p1@ZNF814!0.81!30.50!ZNF814;;chr9:35732514..35732530,+!p5@CREB3!0.80!7.84!CREB3;;chr6:134210243..134210257,+!p1@TCF21!0.79!5.23!TCF21;;chr7:27183114..27183138,-!p3@HOXA5!0.79!5.23!HOXA5;;chr7:27183325..27183338,-!p5@HOXA5!0.79!5.23!HOXA5;;chr7:63505799..63505904,+!p1@ZNF727!0.79!5.23!ZNF727;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.23!HOXC8;;chr17:3571863..3571881,-!p1@TAX1BP3!0.78!394.80!TAX1BP3;;chr5:92918919..92918942,+!p1@NR2F1!0.78!24.40!NR2F1;;chr6:10415276..10415341,-!p2@TFAP2A!0.77!6.10!TFAP2A;;chr17:20492136..20492165,+!p1@MEIS3P2!0.76!7.84!MEIS3P2;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.84!FOXQ1;;chr3:25469724..25469773,+!p1@RARB!0.75!6.97!RARB;;chr6:10412600..10412637,-!p1@TFAP2A!0.74!7.84!TFAP2A;;chr7:149470540..149470596,-!p2@ZNF467!0.74!6.10!ZNF467;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.46!HOXB2;;chr6:151712922..151712942,-!p6@ZBTB2!0.73!6.10!ZBTB2;;chr7:1577899..1577943,+!p3@MAFK!0.73!4.36!MAFK;;chr7:27153428..27153440,-!p3@HOXA3!0.73!4.36!HOXA3;;chr7:27170274..27170308,-!p3@HOXA4!0.73!4.36!HOXA4;;chr7:27170359..27170381,-!p1@HOXA4!0.73!4.36!HOXA4;;chr7:27224795..27224840,-!p2@HOXA11!0.73!4.36!HOXA11;;chr8:55370487..55370503,+!p1@SOX17!0.73!4.36!SOX17;;chr12:66218904..66218913,+!p11@HMGA2!0.73!4.36!HMGA2;;chr13:45150455..45150472,-!p8@TSC22D1!0.73!4.36!TSC22D1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.73!4.36!SEBOX;;chr19:52076425..52076440,+!p2@ZNF175!0.73!4.36!ZNF175;;chr16:86600426..86600441,+!p1@FOXC2!0.72!11.33!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!0.71!7.84!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.97!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.71!5.23!HOXC4;;chr12:80085255..80085284,-!p9@PAWR!0.70!6.10!PAWR;;chr1:151032833..151032850,+!p3@MLLT11!0.69!9.59!MLLT11;;chr8:72756267..72756296,-!p4@MSC!0.69!6.10!MSC;;chr17:46621937..46621966,-!p2@HOXB2!0.68!11.33!HOXB2;;chr9:16870710..16870763,-!p1@BNC2!0.68!6.97!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.66!40.09!HIF1A;;chr3:178789522..178789564,-!p2@ZMAT3!0.65!29.63!ZMAT3;;chr14:62162285..62162296,+!p3@HIF1A!0.65!20.92!HIF1A;;chr12:26277929..26277955,-!p3@BHLHE41!0.65!5.23!BHLHE41;;chr12:26277798..26277809,-!p5@BHLHE41!0.65!3.49!BHLHE41;;chr12:8186270..8186292,+!p3@FOXJ2!0.65!3.49!FOXJ2;;chr15:67418177..67418204,+!p9@SMAD3!0.65!3.49!SMAD3;;chr15:96869394..96869405,+!p25@NR2F2!0.65!3.49!NR2F2;;chr16:67881647..67881663,-!p3@CENPT!0.65!3.49!CENPT;;chr17:41622731..41622764,-!p5@ETV4!0.65!3.49!ETV4;;chr1:44513995..44514031,+!p1@KLF17!0.65!3.49!KLF17;;chr8:72756194..72756208,-!p9@MSC!0.65!3.49!MSC;;chr12:66218836..66218888,+!p1@HMGA2!0.64!36.60!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.64!6.10!FOXD1;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.36!FOXD1;;chr8:49833948..49833973,-!p2@SNAI2!0.63!24.40!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.43!DRAP1;;chr17:46655704..46655718,-!p2@HOXB4!0.63!5.23!HOXB4;;chr11:65687222..65687240,+!p7@DRAP1!0.63!4.36!DRAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.62!5.23!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.62!5.23!ZBTB38;;chrX:106959661..106959763,-!p4@TSC22D3!0.61!10.46!TSC22D3;;chr20:50721803..50721857,-!p2@ZFP64!0.61!5.23!ZFP64;;chr16:88519743..88519754,+!p2@ZFPM1!0.61!3.49!ZFPM1;;chr6:126112074..126112144,+!p1@NCOA7!0.60!47.93!NCOA7;;chr16:67881588..67881612,-!p2@CENPT!0.60!4.36!CENPT;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.07!FOSL1;;chr10:63809077..63809089,+!p5@ARID5B!0.58!6.97!ARID5B;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.36!HOXB7;;chr20:48807648..48807671,+!p9@CEBPB!0.58!4.36!CEBPB;;chr9:73028332..73028385,-!p3@KLF9!0.57!11.33!KLF9;;chr8:23540441..23540466,-!p1@NKX3-1!0.57!6.10!NKX3-1;;chr15:37390374..37390422,-!p9@MEIS2!0.57!3.49!MEIS2;;chr2:208030647..208030689,-!p1@KLF7!0.56!27.02!KLF7;;chr7:77428227..77428242,+!p3@PHTF2!0.56!4.36!PHTF2;;chr1:158985493..158985535,+!p4@IFI16!0.56!4.36!IFI16;;chr2:176994408..176994492,+!p1@HOXD8!0.56!2.61!HOXD8;;chr3:114343870..114343887,-!p9@ZBTB20!0.56!2.61!ZBTB20;;chr4:174451350..174451363,-!p3@HAND2!0.56!2.61!HAND2;;chr11:32457413..32457431,-!p2@WT1!0.56!2.61!WT1;;chr12:54447686..54447704,+!p5@HOXC4!0.56!2.61!HOXC4;;chr12:80085120..80085156,-!p14@PAWR!0.56!2.61!PAWR;;chr14:62164416..62164443,+!p27@HIF1A!0.56!2.61!HIF1A;;chr5:172483414..172483425,+!p3@C5orf41!0.56!2.61!CREBRF;;chr5:50679228..50679288,+!p1@ISL1!0.56!2.61!ISL1;;chr6:10412576..10412599,-!p5@TFAP2A!0.56!2.61!TFAP2A;;chr6:41703952..41703994,-!p4@TFEB!0.56!2.61!TFEB;;chr6:85473227..85473243,-!p5@TBX18!0.56!2.61!TBX18;;chr7:27142290..27142310,-!p1@HOXA2!0.56!2.61!HOXA2;;chr7:27153613..27153630,-!p6@HOXA3!0.56!2.61!HOXA3;;chr7:27183095..27183108,-!p7@HOXA5!0.56!2.61!HOXA5;;chr7:27205136..27205164,-!p1@HOXA9!0.56!2.61!HOXA9;;chr8:106330543..106330554,+!p4@ZFPM2!0.56!2.61!ZFPM2;;chr8:72755987..72756002,-!p7@MSC!0.56!2.61!MSC;;chr8:72756380..72756427,-!p8@MSC!0.56!2.61!MSC;;chr16:86600870..86600921,+!p2@FOXC2!0.56!2.61!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.56!2.61!NFE2L1;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.61!HOXB8;;chr18:19749353..19749367,+!p4@GATA6!0.56!2.61!GATA6;;chr9:35732647..35732678,+!p2@CREB3!0.55!17.43!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.55!5.23!NR2F2;;chr2:191878812..191878823,-!p2@STAT1!0.55!3.49!STAT1;;chr19:50431973..50431998,+!p5@ATF5!0.55!3.49!ATF5;;chr16:88519669..88519726,+!p1@ZFPM1!0.54!27.89!ZFPM1;;chr7:149470641..149470694,-!p1@ZNF467!0.54!13.94!ZNF467;;chr12:66218598..66218645,+!p2@HMGA2!0.54!13.94!HMGA2;;chrX:48900782..48900793,-!p3@TFE3!0.54!5.23!TFE3;;chr2:28616337..28616355,+!p2@FOSL2!0.53!54.91!FOSL2;;chr10:63809106..63809127,+!p1@ARID5B!0.53!41.83!ARID5B;;chr7:27135591..27135658,-!p1@HOXA1!0.53!5.23!HOXA1;;chr21:36260295..36260310,-!p3@RUNX1!0.53!4.36!RUNX1;;chr19:50431999..50432026,+!p4@ATF5!0.53!3.49!ATF5;;chr11:65687243..65687276,+!p8@DRAP1!0.53!3.49!DRAP1;;chr16:68573640..68573660,+!p3@ZFP90!0.53!3.49!ZFP90;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.53!2.61!GLIS1;;chr7:150974206..150974255,-!p1@SMARCD3!0.52!18.30!SMARCD3;;chr12:53614115..53614154,-!p1@RARG!0.52!15.69!RARG;;chr19:52074502..52074587,+!p1@ZNF175!0.52!10.46!ZNF175;;chr15:61521417..61521460,-!p2@RORA!0.52!6.10!RORA;;chr10:96122739..96122750,-!p3@NOC3L!0.52!3.49!NOC3L;;chr15:37392534..37392562,-!p10@MEIS2!0.52!2.61!MEIS2;;chr5:92918860..92918871,+!p10@NR2F1!0.52!2.61!NR2F1;;chr4:2263809..2263854,-!p1@MXD4!0.51!112.43!MXD4;;chr12:125002827..125002855,-!p5@NCOR2!0.51!3.49!NCOR2;;chr12:12764995..12765017,+!p3@CREBL2!0.51!3.49!CREBL2;;chr18:53068911..53068935,-!p4@TCF4!0.51!2.61!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!0.50!8.72!TWIST2;;chr9:109625401..109625458,+!p1@ZNF462!0.50!6.97!ZNF462;;chr1:41174988..41175047,+!p4@NFYC!0.50!6.97!NFYC;;chr3:5021268..5021282,+!p4@BHLHE40!0.50!5.23!BHLHE40;;chr15:96869292..96869320,+!p15@NR2F2!0.50!3.49!NR2F2;;chr19:12444458..12444486,-!p2@ZNF563!0.50!3.49!ZNF563;;chr11:47237922..47237964,+!p4@DDB2!0.50!2.61!DDB2;;chr17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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213
+|ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/Mesothelial%2520Cells%252c%2520donor2.CNhs12197.12156-128G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:12156-128G5
 |is_a=EFO:0002091;;FF:0000099
 |is_obsolete=
+|library_id=CNhs12197
+|library_id_phase_based=2:CNhs12197
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12156
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12156
 |name=Mesothelial Cells, donor2
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12197,LSID976,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=128
 |rna_catalog_number=N/A
@@ Line 59: / Line 79: @@
 |rna_weight_ug=4.6
 |sample_age=42 year old adult
+|sample_category=primary cells
 |sample_cell_catalog=F-MES-F
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12156-128G5;search_select_hide=table117:FF:12156-128G5
 }}

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FF:12156-128G5: Difference between revisions

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Latest revision as of 18:32, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0