FF:11930-125I4: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	Mallassez-derived cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13551
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	male
age	18
cell type	epithelial cell rests of Malassez
cell line	NA
company	NA
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	MZH7
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005171

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13551		CAGE		DRX008326		DRR009198

Accession ID Hg19

Library id		BAM		CTSS
CNhs13551		DRZ000623		DRZ002008

Accession ID Hg38

Library id		BAM		CTSS
CNhs13551		DRZ011973		DRZ013358

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0351
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.108
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.302
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.085
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.108
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.108
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.584
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.228
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.892
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.892
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.028
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.709
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.59
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0143
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0148
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.12
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.195
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0576
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13551

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.676
MA0003.1	MA0003.1	0.717
MA0004.1	MA0004.1	0.022
MA0006.1	MA0006.1	0.0459
MA0007.1	MA0007.1	0.476
MA0009.1	MA0009.1	0.0304
MA0014.1	MA0014.1	0.103
MA0017.1	MA0017.1	0.482
MA0018.2	MA0018.2	0.0157
MA0019.1	MA0019.1	0.327
MA0024.1	MA0024.1	0.0624
MA0025.1	MA0025.1	0.937
MA0027.1	MA0027.1	0.456
MA0028.1	MA0028.1	2.18441e-4
MA0029.1	MA0029.1	0.997
MA0030.1	MA0030.1	0.194
MA0031.1	MA0031.1	0.0769
MA0035.2	MA0035.2	0.218
MA0038.1	MA0038.1	0.525
MA0039.2	MA0039.2	5.84388e-4
MA0040.1	MA0040.1	0.336
MA0041.1	MA0041.1	0.377
MA0042.1	MA0042.1	0.932
MA0043.1	MA0043.1	0.347
MA0046.1	MA0046.1	0.537
MA0047.2	MA0047.2	0.89
MA0048.1	MA0048.1	0.596
MA0050.1	MA0050.1	0.787
MA0051.1	MA0051.1	0.387
MA0052.1	MA0052.1	0.0464
MA0055.1	MA0055.1	0.0269
MA0057.1	MA0057.1	0.0736
MA0058.1	MA0058.1	0.00463
MA0059.1	MA0059.1	0.977
MA0060.1	MA0060.1	0.153
MA0061.1	MA0061.1	0.53
MA0062.2	MA0062.2	8.72169e-4
MA0065.2	MA0065.2	0.106
MA0066.1	MA0066.1	0.141
MA0067.1	MA0067.1	0.0104
MA0068.1	MA0068.1	1.69328e-5
MA0069.1	MA0069.1	0.559
MA0070.1	MA0070.1	0.235
MA0071.1	MA0071.1	0.0527
MA0072.1	MA0072.1	0.152
MA0073.1	MA0073.1	0.441
MA0074.1	MA0074.1	0.362
MA0076.1	MA0076.1	0.00704
MA0077.1	MA0077.1	0.103
MA0078.1	MA0078.1	0.81
MA0079.2	MA0079.2	0.57
MA0080.2	MA0080.2	0.0107
MA0081.1	MA0081.1	0.553
MA0083.1	MA0083.1	0.176
MA0084.1	MA0084.1	0.0405
MA0087.1	MA0087.1	0.917
MA0088.1	MA0088.1	0.253
MA0090.1	MA0090.1	3.66148e-5
MA0091.1	MA0091.1	0.186
MA0092.1	MA0092.1	0.553
MA0093.1	MA0093.1	0.0154
MA0099.2	MA0099.2	3.03293e-11
MA0100.1	MA0100.1	0.302
MA0101.1	MA0101.1	0.185
MA0102.2	MA0102.2	0.487
MA0103.1	MA0103.1	1.25701e-6
MA0104.2	MA0104.2	0.247
MA0105.1	MA0105.1	0.173
MA0106.1	MA0106.1	6.80846e-13
MA0107.1	MA0107.1	0.31
MA0108.2	MA0108.2	0.695
MA0111.1	MA0111.1	0.878
MA0112.2	MA0112.2	0.135
MA0113.1	MA0113.1	0.271
MA0114.1	MA0114.1	0.26
MA0115.1	MA0115.1	0.911
MA0116.1	MA0116.1	0.161
MA0117.1	MA0117.1	0.993
MA0119.1	MA0119.1	0.362
MA0122.1	MA0122.1	0.853
MA0124.1	MA0124.1	0.958
MA0125.1	MA0125.1	0.0266
MA0131.1	MA0131.1	0.861
MA0135.1	MA0135.1	0.996
MA0136.1	MA0136.1	0.584
MA0137.2	MA0137.2	0.614
MA0138.2	MA0138.2	0.406
MA0139.1	MA0139.1	0.343
MA0140.1	MA0140.1	0.577
MA0141.1	MA0141.1	0.132
MA0142.1	MA0142.1	0.639
MA0143.1	MA0143.1	0.458
MA0144.1	MA0144.1	0.856
MA0145.1	MA0145.1	0.0376
MA0146.1	MA0146.1	0.541
MA0147.1	MA0147.1	0.56
MA0148.1	MA0148.1	0.563
MA0149.1	MA0149.1	0.0243
MA0150.1	MA0150.1	0.747
MA0152.1	MA0152.1	0.501
MA0153.1	MA0153.1	0.956
MA0154.1	MA0154.1	0.215
MA0155.1	MA0155.1	0.426
MA0156.1	MA0156.1	0.214
MA0157.1	MA0157.1	0.0641
MA0159.1	MA0159.1	0.888
MA0160.1	MA0160.1	0.386
MA0162.1	MA0162.1	0.0646
MA0163.1	MA0163.1	0.219
MA0164.1	MA0164.1	0.956
MA0258.1	MA0258.1	0.468
MA0259.1	MA0259.1	0.45

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13551

Novel motif	Logo	P-value
1	1	0.794
10	10	0.766
100	100	0.682
101	101	0.139
102	102	0.261
103	103	0.0825
104	104	0.839
105	105	0.509
106	106	0.923
107	107	0.743
108	108	0.899
109	109	0.00205
11	11	0.365
110	110	0.163
111	111	0.232
112	112	0.345
113	113	0.121
114	114	0.0841
115	115	0.714
116	116	0.648
117	117	0.161
118	118	0.543
119	119	0.841
12	12	0.844
120	120	0.0405
121	121	0.231
122	122	0.29
123	123	0.114
124	124	0.054
125	125	0.497
126	126	0.102
127	127	0.0709
128	128	0.678
129	129	0.11
13	13	0.00351
130	130	0.924
131	131	0.808
132	132	0.639
133	133	0.00111
134	134	0.373
135	135	0.702
136	136	0.00894
137	137	0.09
138	138	0.423
139	139	0.19
14	14	0.928
140	140	0.79
141	141	0.346
142	142	0.721
143	143	0.798
144	144	0.256
145	145	0.643
146	146	0.153
147	147	0.548
148	148	0.709
149	149	0.965
15	15	0.915
150	150	0.323
151	151	0.64
152	152	0.0211
153	153	0.628
154	154	0.764
155	155	0.625
156	156	0.601
157	157	0.104
158	158	0.0975
159	159	0.605
16	16	0.0203
160	160	0.723
161	161	0.239
162	162	0.698
163	163	0.937
164	164	0.871
165	165	0.443
166	166	0.635
167	167	0.692
168	168	0.12
169	169	0.0929
17	17	0.391
18	18	0.485
19	19	0.884
2	2	0.229
20	20	0.895
21	21	0.956
22	22	0.914
23	23	0.915
24	24	0.00309
25	25	0.531
26	26	0.886
27	27	0.501
28	28	0.459
29	29	0.491
3	3	0.605
30	30	0.0753
31	31	0.864
32	32	0.0525
33	33	0.0551
34	34	0.79
35	35	0.0966
36	36	0.732
37	37	0.0617
38	38	0.67
39	39	0.318
4	4	0.649
40	40	0.0153
41	41	0.465
42	42	0.385
43	43	0.983
44	44	0.561
45	45	0.0873
46	46	0.959
47	47	0.129
48	48	0.0846
49	49	0.335
5	5	0.703
50	50	0.429
51	51	0.919
52	52	0.372
53	53	0.313
54	54	0.915
55	55	0.299
56	56	0.272
57	57	0.542
58	58	0.669
59	59	0.544
6	6	0.388
60	60	0.305
61	61	0.795
62	62	0.918
63	63	0.207
64	64	0.935
65	65	0.808
66	66	0.398
67	67	0.777
68	68	0.343
69	69	0.676
7	7	0.147
70	70	0.448
71	71	0.271
72	72	0.627
73	73	0.00447
74	74	0.0791
75	75	0.247
76	76	0.787
77	77	0.0491
78	78	0.00228
79	79	0.576
8	8	0.43
80	80	0.666
81	81	0.173
82	82	0.555
83	83	0.97
84	84	0.508
85	85	0.792
86	86	0.985
87	87	0.00149
88	88	0.715
89	89	0.0291
9	9	0.7
90	90	0.49
91	91	0.751
92	92	0.753
93	93	0.083
94	94	0.851
95	95	0.0245
96	96	0.876
97	97	0.655
98	98	0.904
99	99	0.388

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13551

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000087 human Malassez derived epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)

UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005171
-|accession_numbers=CAGE;DRX008326;DRR009198;DRZ000623;DRZ002008
+|accession_numbers=CAGE;DRX008326;DRR009198;DRZ000623;DRZ002008;DRZ011973;DRZ013358
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
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4;;chr13:41593425..41593480,-!p1@ELF1!0.58!21.55!ELF1;;chr12:66218573..66218596,+!p7@HMGA2!0.58!4.54!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.58!4.54!ETV4;;chr6:10419768..10419819,-!p6@TFAP2A!0.58!2.84!TFAP2A;;chr2:70314240..70314256,+!p4@PCBP1!0.57!6.38!PCBP1;;chr11:615570..615721,-!p2@IRF7!0.57!6.10!IRF7;;chr2:191878812..191878823,-!p2@STAT1!0.57!3.69!STAT1;;chr3:69811858..69811881,+!p5@MITF!0.57!2.69!MITF;;chr1:209979449..209979460,-!p3@IRF6!0.57!2.69!IRF6;;chr1:24646263..24646277,+!p4@GRHL3!0.57!2.69!GRHL3;;chr17:41623692..41623715,-!p1@ETV4!0.56!13.47!ETV4;;chr2:60778035..60778060,-!p4@BCL11A!0.56!3.26!BCL11A;;chr11:65687362..65687436,+!p3@DRAP1!0.55!14.32!DRAP1;;chr1:151032922..151032951,+!p2@MLLT11!0.55!4.68!MLLT11;;chr12:27485889..27485900,+!p4@ARNTL2!0.55!3.26!ARNTL2;;chr3:141121871..141121885,+!p13@ZBTB38!0.55!2.55!ZBTB38;;chr11:47236584..47236679,+!p1@DDB2!0.54!34.03!DDB2;;chr16:54320646..54320672,-!p2@IRX3!0.54!4.11!IRX3;;chr1:151032739..151032748,+!p6@MLLT11!0.54!3.26!MLLT11;;chr10:104155480..104155534,+!p2@NFKB2!0.53!19.71!NFKB2;;chr4:87857474..87857489,+!p7@AFF1!0.53!4.68!AFF1;;chr5:3595934..3595957,+!p2@IRX1!0.53!2.41!IRX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.53!2.41!TFAP2A;;chr7:96654026..96654061,-!p2@DLX5!0.53!2.41!DLX5;;chr19:37341160..37341194,-!p2@ZNF790!0.52!5.81!ZNF790;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.97!HMGA2;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.70!ELK3;;chr17:41623009..41623053,-!p4@ETV4!0.51!4.11!ETV4;;chr16:68573640..68573660,+!p3@ZFP90!0.51!3.26!ZFP90;;chr5:72744562..72744573,-!p3@FOXD1!0.51!2.98!FOXD1;;chr1:203764689..203764700,+!p3@ZC3H11A!0.51!2.55!ZC3H11A;;chr14:74256787..74256858,-!p6@C14orf43!0.51!2.27!C14orf43;;chr14:74353454..74353469,+!p4@ZNF410!0.50!4.82!ZNF410;;chr15:67418047..67418093,+!p4@SMAD3!0.50!2.98!SMAD3;;chr2:113994526..113994556,-!p3@PAX8!0.50!2.13!PAX8;;chr2:231084659..231084721,-!p1@SP110!0.49!64.79!SP110;;chr19:9785724..9785740,-!p2@ZNF562!0.49!10.63!ZNF562;;chr19:58326246..58326262,-!p2@ZNF552!0.49!5.95!ZNF552;;chr12:80084737..80084763,-!p3@PAWR!0.48!9.78!PAWR;;chr1:203764633..203764674,+!p2@ZC3H11A!0.48!3.69!ZC3H11A;;chr14:21566731..21566836,-!p1@ZNF219!0.47!28.64!ZNF219;;chr18:3449720..3449749,+!p2@TGIF1!0.47!4.96!TGIF1;;chr14:24630902..24630948,+!p2@IRF9!0.47!2.55!IRF9;;chr12:66218152..66218174,+!p10@HMGA2!0.47!2.13!HMGA2;;chr5:3595961..3595975,+!p3@IRX1!0.47!1.98!IRX1;;chr15:101069186..101069200,-!p4@CERS3!0.47!1.98!CERS3;;chr16:31076332..31076388,-!p3@ZNF668!0.47!1.98!ZNF668;;chrX:128657457..128657475,-!p1@SMARCA1!0.46!29.91!SMARCA1;;chr9:114287433..114287513,+!p1@ZNF483!0.46!6.10!ZNF483;;chr4:206390..206444,+!p1@ZNF876P!0.46!3.97!ZNF876P;;chr12:125002827..125002855,-!p5@NCOR2!0.46!2.98!NCOR2;;chr4:4291837..4291859,-!p2@LYAR!0.45!7.66!LYAR;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.45!2.55!PRDM11;;chr17:41623259..41623278,-!p7@ETV4!0.45!2.27!ETV4;;chr15:67418119..67418162,+!p5@SMAD3!0.45!2.13!SMAD3;;chr17:7492979..7492991,-!p5@SOX15!0.45!1.84!SOX15;;chr4:57547454..57547469,-!p1@HOPX!0.45!1.84!HOPX;;chr19:42636625..42636632,-!p2@POU2F2!0.45!1.84!POU2F2;;chr19:22235279..22235301,+!p1@ZNF257!0.44!3.97!ZNF257;;chr1:8938709..8938720,-!p3@ENO1!0.43!117.82!ENO1;;chr11:65667846..65667868,-!p1@FOSL1!0.43!64.08!FOSL1;;chr2:217277480..217277505,+!p2@SMARCAL1!0.43!7.66!SMARCAL1;;chr12:66218904..66218913,+!p11@HMGA2!0.43!1.70!HMGA2;;chr6:10413188..10413249,-!p7@TFAP2A!0.43!1.70!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.43!1.70!TFAP2A;;chr8:128747709..128747723,+!p20@MYC!0.43!1.70!MYC;;chr19:20278012..20278034,+!p1@ZNF486!0.42!19.42!ZNF486;;chr2:70142232..70142251,+!p1@MXD1!0.42!12.76!MXD1;;chr9:35732647..35732678,+!p2@CREB3!0.42!12.62!CREB3;;chr12:48298785..48298828,-!p1@VDR!0.42!12.19!VDR;;chr12:7079780..7079791,-!p2@PHB2!0.42!11.91!PHB2;;chr19:2900917..2900981,+!p1@ZNF57!0.42!8.65!ZNF57;;chr12:51566562..51566584,-!p2@TFCP2!0.42!5.95!TFCP2;;chr2:231280954..231280965,+!p2@SP100!0.42!3.69!SP100;;chr16:54320158..54320200,-!p5@IRX3!0.42!2.69!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.42!2.69!IRX5;;chr2:238600933..238600985,+!p3@LRRFIP1!0.41!12.05!LRRFIP1;;chr6:15246200..15246214,+!p2@JARID2!0.41!5.81!JARID2;;chr8:102504690..102504704,+!p3@GRHL2!0.41!1.56!GRHL2;;chr8:102504979..102505010,+!p2@GRHL2!0.41!1.56!GRHL2;;chr22:24093154..24093183,-!p2@ZNF70!0.41!1.56!ZNF70;;chr15:83953474..83953483,-!p3@BNC1!0.41!1.56!BNC1;;chr9:22447422..22447483,+!p1@DMRTA1!0.41!1.56!DMRTA1;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.41!1.56!PRDM11;;chr11:65554528..65554546,+!p1@OVOL1!0.41!1.56!OVOL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.40!4.11!ZNF395;;chr2:46524878..46524891,+!p3@EPAS1!0.40!3.26!EPAS1;;chr10:64134120..64134183,+!p1@ZNF365!0.40!1.98!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!0.39!33.60!ZNF267;;chr22:42229210..42229229,+!p3@SREBF2!0.39!4.54!SREBF2;;chr16:8962544..8962584,-!p2@CARHSP1!0.39!4.40!CARHSP1;;chr1:10754477..10754517,-!p1@CASZ1!0.39!2.98!CASZ1;;chr19:57792157..57792170,+!p6@ZNF460!0.39!2.55!Z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ZNF207!0.14!180.48!ZNF207;;chr10:51565188..51565236,+!p1@NCOA4!0.14!92.44!NCOA4;;chr22:41864662..41864708,-!p1@PHF5A!0.14!53.31!PHF5A;;chr6:21593973..21593988,+!p1@SOX4!0.14!44.94!SOX4;;chr17:17740287..17740307,-!p1@SREBF1!0.14!32.61!SREBF1;;chr19:19932513..19932569,-!p1@ZNF506!0.14!22.97!ZNF506;;chr9:35732592..35732640,+!p1@CREB3!0.14!15.74!CREB3;;chr21:30671235..30671253,+!p1@BACH1!0.14!15.45!BACH1;;chr4:106068026..106068084,+!p1@TET2!0.14!10.49!TET2;;chr3:141747459..141747475,-!p1@TFDP2!0.14!9.64!TFDP2;;chr6:168227552..168227609,+!p1@MLLT4!0.14!9.50!MLLT4;;chr1:247267618..247267674,-!p1@ZNF669!0.14!9.22!ZNF669;;chr18:51750888..51750920,-!p3@MBD2!0.14!8.22!MBD2;;chr20:3388238..3388323,-!p1@C20orf194!0.14!8.08!C20orf194;;chr6:44355257..44355315,+!p2@CDC5L!0.14!4.96!CDC5L;;chr16:31085514..31085576,-!p1@ZNF668!0.14!4.40!ZNF668;;chr11:62369352..62369373,-!p5@MTA2!0.14!4.11!MTA2;;chr19:23869970..23869991,-!p1@ZNF675!0.14!3.97!ZNF675;;chr16:2059754..2059777,-!p2@ZNF598!0.14!3.54!ZNF598;;chr11:65430554..65430579,-!p3@RELA!0.14!2.41!RELA;;chr9:14083467..14083483,-!p4@NFIB!0.14!2.27!NFIB;;chr18:32821037..32821057,+!p2@ZNF397!0.14!1.98!ZNF397;;chr18:3449821..3449860,+!p7@TGIF1!0.14!1.42!TGIF1;;chr19:12075844..12075880,+!p3@ZNF763!0.14!1.28!ZNF763;;chr15:57210759..57210775,+!p7@TCF12!0.14!0.99!TCF12;;chr5:178322893..178322931,+!p1@ZFP2!0.14!0.99!ZFP2;;chr6:143266185..143266238,-!p2@HIVEP2!0.14!0.85!HIVEP2;;chr8:37963466..37963506,+!p3@ASH2L!0.14!0.71!ASH2L;;chr19:20844346..20844351,-!p2@ZNF626!0.14!0.71!ZNF626;;chr1:67390715..67390733,+!p7@MIER1!0.14!0.71!MIER1;;chr12:27485733..27485742,+!p5@ARNTL2!0.14!0.57!ARNTL2;;chr19:19303794..19303805,+!p5@RFXANK!0.14!0.57!RFXANK;;chr19:20748557..20748568,-!p2@ZNF737!0.14!0.57!ZNF737;;chr3:37217544..37217586,-!p6@LRRFIP2!0.14!0.57!LRRFIP2;;chr7:27779729..27779819,+!p1@TAX1BP1!0.13!76.56!TAX1BP1;;chr21:40177845..40177863,+!p1@ETS2!0.13!72.45!ETS2;;chr2:169312725..169312810,+!p1@CERS6!0.13!29.06!CERS6;;chr6:56954919..56955000,+!p1@ZNF451!0.13!23.68!ZNF451;;chr6:35464817..35464894,-!p1@TEAD3!0.13!17.86!TEAD3;;chr12:95467359..95467417,-!p2@NR2C1!0.13!15.45!NR2C1;;chr2:85198369..85198483,+!p2@KCMF1!0.13!13.75!KCMF1;;chr1:246729544..246729572,-!p1@TFB2M!0.13!11.34!TFB2M;;chr1:203764742..203764769,+!p1@ZC3H11A!0.13!6.81!ZC3H11A;;chr14:100705335..100705360,+!p4@YY1!0.13!6.24!YY1;;chr10:96122645..96122675,-!p2@NOC3L!0.13!5.10!NOC3L;;chr8:128750654..128750793,+!p3@MYC!0.13!4.11!MYC;;chr1:154975258..154975330,+!p1@ZBTB7B!0.13!3.69!ZBTB7B;;chr19:58326267..58326292,-!p1@ZNF552!0.13!3.54!ZNF552;;chr14:74353576..74353589,+!p3@ZNF410!0.13!3.40!ZNF410;;chr19:37096194..37096235,+!p1@ZNF382!0.13!3.12!ZNF382;;chr5:178157609..178157650,-!p2@ZNF354A!0.13!2.55!ZNF354A;;chr7:148892557..148892580,+!p4@ZNF282!0.13!2.55!ZNF282;;chr10:35415761..35415800,+!p7@CREM!0.13!2.27!CREM;;chr1:23694697..23694756,-!p3@ZNF436!0.13!1.98!ZNF436;;chr20:31350184..31350200,+!p1@DNMT3B!0.13!1.70!DNMT3B;;chr11:47270436..47270464,+!p2@NR1H3!0.13!1.70!NR1H3;;chr20:39946400..39946423,-!p3@ZHX3!0.13!1.42!ZHX3;;chr8:42698494..42698507,-!p3@THAP1!0.13!1.42!THAP1;;chr16:88636835..88636846,+!p2@ZC3H18!0.13!1.28!ZC3H18;;chr6:28235131..28235151,+!p2@ZNF187!0.13!0.85!ZNF187;;chr7:28448995..28449011,+!p4@CREB5!0.13!0.85!CREB5;;chr3:141747441..141747452,-!p4@TFDP2!0.13!0.85!TFDP2;;chr6:12009042..12009092,+!p6@HIVEP1!0.13!0.71!HIVEP1;;chr6:126240442..126240459,+!p4@NCOA7!0.13!0.71!NCOA7;;chr19:50431973..50431998,+!p5@ATF5!0.13!0.71!ATF5;;chr1:23694556..23694584,-!p6@ZNF436!0.13!0.71!ZNF436;;chr1:40997363..40997392,+!p2@ZNF684!0.13!0.71!ZNF684;;chr2:46524865..46524870,+!p9@EPAS1!0.13!0.57!EPAS1;;chr3:5022174..5022207,+!p8@BHLHE40!0.13!0.57!BHLHE40;;chr4:81104958..81104981,+!p5@PRDM8!0.13!0.57!PRDM8;;chr6:44355325..44355340,+!p4@CDC5L!0.13!0.57!CDC5L;;chr12:96640858..96640878,+!p6@ELK3!0.13!0.57!ELK3;;chr6:35465058..35465077,-!p2@TEAD3!0.13!0.43!TEAD3;;chr1:202777535..202777556,-!p1@KDM5B!0.12!39.70!KDM5B;;chr11:62369291..62369351,-!p1@MTA2!0.12!21.83!MTA2;;chr4:76439665..76439699,+!p1@THAP6!0.12!16.02!THAP6;;chr11:9482551..9482580,+!p1@ZNF143!0.12!14.89!ZNF143;;chr19:37663572..37663630,-!p1@ZNF585A!0.12!13.19!ZNF585A;;chr19:21203451..21203475,+!p1@ZNF430!0.12!11.63!ZNF430;;chr1:151319710..151319774,-!p1@RFX5!0.12!11.20!RFX5;;chr19:37019136..37019178,-!p1@ZNF260!0.12!8.93!ZNF260;;chr4:87856191..87856208,+!p2@AFF1!0.12!8.79!AFF1;;chr14:55493763..55493824,-!p1@WDHD1!0.12!8.36!WDHD1;;chr2:42795839..42795887,+!p2@MTA3!0.12!7.37!MTA3;;chr19:52901094..52901134,+!p1@ZNF528!0.12!7.23!ZNF528;;chr19:37157713..37157760,-!p1@ZNF461!0.12!5.95!ZNF461;;chr3:185826764..185826803,-!p2@ETV5!0.12!3.69!ETV5;;chr4:146402966..146402985,+!p2@SMAD1!0.12!3.69!SMAD1;;chr9:128509663..128509715,+!p1@PBX3!0.12!3.26!PBX3;;chr19:58220517..58220583,-!p1@ZNF154!0.12!2.98!ZNF154;;chr7:148892581..148892604,+!p3@ZNF282!0.12!2.84!ZNF282;;chr1:78444714..78444725,-!p3@FUBP1!0.12!2.41!FUBP1;;chr18:3451646..3451691,+!p3@TGIF1!0.12!2.41!TGIF1;;chr1:161736125..161736136,+!p5@ATF6!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 |ffid_belonging_in_development=CL:0000221
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11930-125I4
 |is_a=EFO:0002091;;FF:0000087
 |is_obsolete=
 |library_id=CNhs13551
-|library_id_phase_based=1:CNhs13551
+|library_id_phase_based=2:CNhs13551
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11930
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11930
 |name=Mallassez-derived cells, donor3
 |namespace=
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 }}

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FF:11930-125I4: Difference between revisions

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Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0