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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005907
|DRA_sample_Accession=CAGE@SAMD00005907
|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874
|accession_numbers=CAGE;DRX008192;DRR009064;DRZ000489;DRZ001874;DRZ011839;DRZ013224
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor3.CNhs13512.11906-125F7.hg38.nobarcode.ctss.bed.gz
|id=FF:11906-125F7
|id=FF:11906-125F7
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
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|library_id=CNhs13512
|library_id=CNhs13512
|library_id_phase_based=2:CNhs13512
|library_id_phase_based=2:CNhs13512
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11906
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11906
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|name=CD4+CD25-CD45RA+ naive conventional T cells, donor3
|namespace=
|namespace=
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 100:
|top_motifs=PDX1:2.76983119066;CDX1,2,4:2.45063693218;FOX{D1,D2}:2.43424202459;CREB1:2.36663663806;PAX3,7:2.36534311548;BPTF:2.02514076398;RUNX1..3:1.93018899916;ELF1,2,4:1.8845963436;RFX2..5_RFXANK_RFXAP:1.79682311583;ZBTB16:1.67538683272;HMX1:1.56699647459;LEF1_TCF7_TCF7L1,2:1.4993469272;ETS1,2:1.48308707497;TLX2:1.45524222209;FOXO1,3,4:1.43748513467;ATF5_CREB3:1.41564124926;DMAP1_NCOR{1,2}_SMARC:1.39535332567;ATF4:1.37441493425;IKZF2:1.34896854236;SPZ1:1.32133833743;FOX{F1,F2,J1}:1.23751201043;BREu{core}:1.2165495279;RFX1:1.16796615234;NKX6-1,2:1.16295152855;PBX1:1.14245457585;PAX6:1.11920492211;FOXN1:1.08161716315;AHR_ARNT_ARNT2:0.948594859614;PITX1..3:0.92589330193;SPI1:0.905037001171;RORA:0.859227965338;FOXP1:0.850052975304;ELK1,4_GABP{A,B1}:0.793578760013;ZEB1:0.793267417511;GATA6:0.782267636059;IRF1,2:0.740333047867;HIF1A:0.718360491024;JUN:0.708760624345;AIRE:0.680804535618;ATF2:0.676190331462;TGIF1:0.640135228854;NKX2-1,4:0.601657515813;SPIB:0.581798637835;YY1:0.565690542829;T:0.558465926805;HOX{A6,A7,B6,B7}:0.534318941021;PAX2:0.524780440775;SOX5:0.491194891238;SNAI1..3:0.486762089128;CRX:0.459128453076;NR5A1,2:0.385123632297;FOXD3:0.369053840929;CUX2:0.351773138976;ATF6:0.339383836995;TOPORS:0.328287944752;FOX{I1,J2}:0.313117313726;IRF7:0.300395828325;STAT1,3:0.284096900104;LMO2:0.268094144498;MYOD1:0.24419445992;NFIX:0.230030679269;POU1F1:0.214580306569;POU2F1..3:0.213847097084;SOX2:0.2078862489;NFE2L1:0.181230981192;NANOG:0.130404309989;PAX4:0.112938894864;NFIL3:0.109775925428;STAT5{A,B}:0.0582637954313;MAFB:0.0550203729799;VSX1,2:0.0346669697907;FOXA2:0.0128700998793;HBP1_HMGB_SSRP1_UBTF:0.00508231370969;EVI1:0.000779045542529;NRF1:-0.00566150081124;DBP:-0.0206430914301;NFKB1_REL_RELA:-0.0219271252322;SMAD1..7,9:-0.0773310055236;MYB:-0.0780571269038;TAL1_TCF{3,4,12}:-0.085093827802;ALX1:-0.0894148206276;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105593661082;HOXA9_MEIS1:-0.127721290995;EP300:-0.142391221217;NKX3-1:-0.16327243099;FOXQ1:-0.166772021989;POU6F1:-0.186079364325;SREBF1,2:-0.222335510474;HAND1,2:-0.227674446982;OCT4_SOX2{dimer}:-0.279700475108;HNF1A:-0.280399630153;NR6A1:-0.303270003689;FOXL1:-0.31484822803;PPARG:-0.360015754562;HNF4A_NR2F1,2:-0.377852586738;MYFfamily:-0.385176512278;GLI1..3:-0.428867219465;RREB1:-0.434409375058;PRRX1,2:-0.459236341253;HES1:-0.467391645549;NANOG{mouse}:-0.475438614843;NFATC1..3:-0.520216600663;ADNP_IRX_SIX_ZHX:-0.539845640539;ZNF143:-0.545108694322;GFI1B:-0.557150826436;TBX4,5:-0.585430850266;E2F1..5:-0.604321804689;MEF2{A,B,C,D}:-0.606161753251;NFY{A,B,C}:-0.607475120454;NHLH1,2:-0.610009590798;EGR1..3:-0.626824833865;AR:-0.633661116478;POU3F1..4:-0.636847295766;STAT2,4,6:-0.657744353514;CEBPA,B_DDIT3:-0.707117771582;FOSL2:-0.723287612922;HMGA1,2:-0.760148907526;RBPJ:-0.760434456615;MED-1{core}:-0.772771903356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.774277926537;FOS_FOS{B,L1}_JUN{B,D}:-0.779753465676;HLF:-0.793086848352;REST:-0.800607504973;NKX2-2,8:-0.811845649878;BACH2:-0.813108884315;ZNF384:-0.818640551395;PAX5:-0.857279186646;MZF1:-0.867339674129;RXRA_VDR{dimer}:-0.86819095641;GFI1:-0.898773899162;SOX{8,9,10}:-0.900961398372;ALX4:-0.903836353208;FOXP3:-0.934705150632;ZNF148:-0.935239492787;NKX2-3_NKX2-5:-0.93879959702;RXR{A,B,G}:-0.967814569823;FOXM1:-0.972130328903;NFE2:-0.989262641727;ZNF423:-1.00074555227;UFEwm:-1.00274236141;LHX3,4:-1.02265190817;ZFP161:-1.05760399668;GCM1,2:-1.09087092225;SRF:-1.11270835126;ZBTB6:-1.11289235434;HOX{A5,B5}:-1.11330811385;MTE{core}:-1.14316601717;ONECUT1,2:-1.15185224621;ZNF238:-1.15198940713;ARID5B:-1.15288688976;CDC5L:-1.15342182518;KLF4:-1.15582231787;SOX17:-1.1648264878;TP53:-1.18321771429;bHLH_family:-1.18894276992;GATA4:-1.19373790479;NR1H4:-1.19410011134;MTF1:-1.22807142914;TFAP4:-1.25085117234;GZF1:-1.26415579596;PRDM1:-1.32817673099;EN1,2:-1.3607079086;PATZ1:-1.37675020343;MYBL2:-1.38253450021;NR3C1:-1.41076600843;TFCP2:-1.46530374141;NFE2L2:-1.47678779628;XBP1:-1.48885557367;HIC1:-1.50494781819;HOX{A4,D4}:-1.51927630408;POU5F1:-1.53474597365;PAX8:-1.55740590447;ESR1:-1.59189366314;TEAD1:-1.59692714746;TEF:-1.60144125148;GTF2I:-1.61529430644;MAZ:-1.62762041486;EBF1:-1.64492101552;GTF2A1,2:-1.64987282384;XCPE1{core}:-1.67235933483;NKX3-2:-1.69348289463;TLX1..3_NFIC{dimer}:-1.71438104099;TFAP2B:-1.76128108733;ZIC1..3:-1.80909488298;ESRRA:-1.81368153932;TFDP1:-1.9199593927;PAX1,9:-1.95910249057;TBP:-1.97537542152;SP1:-2.02738623085;TFAP2{A,C}:-2.07571116447;HSF1,2:-2.64570675183;IKZF1:-2.75319095604
|top_motifs=PDX1:2.76983119066;CDX1,2,4:2.45063693218;FOX{D1,D2}:2.43424202459;CREB1:2.36663663806;PAX3,7:2.36534311548;BPTF:2.02514076398;RUNX1..3:1.93018899916;ELF1,2,4:1.8845963436;RFX2..5_RFXANK_RFXAP:1.79682311583;ZBTB16:1.67538683272;HMX1:1.56699647459;LEF1_TCF7_TCF7L1,2:1.4993469272;ETS1,2:1.48308707497;TLX2:1.45524222209;FOXO1,3,4:1.43748513467;ATF5_CREB3:1.41564124926;DMAP1_NCOR{1,2}_SMARC:1.39535332567;ATF4:1.37441493425;IKZF2:1.34896854236;SPZ1:1.32133833743;FOX{F1,F2,J1}:1.23751201043;BREu{core}:1.2165495279;RFX1:1.16796615234;NKX6-1,2:1.16295152855;PBX1:1.14245457585;PAX6:1.11920492211;FOXN1:1.08161716315;AHR_ARNT_ARNT2:0.948594859614;PITX1..3:0.92589330193;SPI1:0.905037001171;RORA:0.859227965338;FOXP1:0.850052975304;ELK1,4_GABP{A,B1}:0.793578760013;ZEB1:0.793267417511;GATA6:0.782267636059;IRF1,2:0.740333047867;HIF1A:0.718360491024;JUN:0.708760624345;AIRE:0.680804535618;ATF2:0.676190331462;TGIF1:0.640135228854;NKX2-1,4:0.601657515813;SPIB:0.581798637835;YY1:0.565690542829;T:0.558465926805;HOX{A6,A7,B6,B7}:0.534318941021;PAX2:0.524780440775;SOX5:0.491194891238;SNAI1..3:0.486762089128;CRX:0.459128453076;NR5A1,2:0.385123632297;FOXD3:0.369053840929;CUX2:0.351773138976;ATF6:0.339383836995;TOPORS:0.328287944752;FOX{I1,J2}:0.313117313726;IRF7:0.300395828325;STAT1,3:0.284096900104;LMO2:0.268094144498;MYOD1:0.24419445992;NFIX:0.230030679269;POU1F1:0.214580306569;POU2F1..3:0.213847097084;SOX2:0.2078862489;NFE2L1:0.181230981192;NANOG:0.130404309989;PAX4:0.112938894864;NFIL3:0.109775925428;STAT5{A,B}:0.0582637954313;MAFB:0.0550203729799;VSX1,2:0.0346669697907;FOXA2:0.0128700998793;HBP1_HMGB_SSRP1_UBTF:0.00508231370969;EVI1:0.000779045542529;NRF1:-0.00566150081124;DBP:-0.0206430914301;NFKB1_REL_RELA:-0.0219271252322;SMAD1..7,9:-0.0773310055236;MYB:-0.0780571269038;TAL1_TCF{3,4,12}:-0.085093827802;ALX1:-0.0894148206276;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105593661082;HOXA9_MEIS1:-0.127721290995;EP300:-0.142391221217;NKX3-1:-0.16327243099;FOXQ1:-0.166772021989;POU6F1:-0.186079364325;SREBF1,2:-0.222335510474;HAND1,2:-0.227674446982;OCT4_SOX2{dimer}:-0.279700475108;HNF1A:-0.280399630153;NR6A1:-0.303270003689;FOXL1:-0.31484822803;PPARG:-0.360015754562;HNF4A_NR2F1,2:-0.377852586738;MYFfamily:-0.385176512278;GLI1..3:-0.428867219465;RREB1:-0.434409375058;PRRX1,2:-0.459236341253;HES1:-0.467391645549;NANOG{mouse}:-0.475438614843;NFATC1..3:-0.520216600663;ADNP_IRX_SIX_ZHX:-0.539845640539;ZNF143:-0.545108694322;GFI1B:-0.557150826436;TBX4,5:-0.585430850266;E2F1..5:-0.604321804689;MEF2{A,B,C,D}:-0.606161753251;NFY{A,B,C}:-0.607475120454;NHLH1,2:-0.610009590798;EGR1..3:-0.626824833865;AR:-0.633661116478;POU3F1..4:-0.636847295766;STAT2,4,6:-0.657744353514;CEBPA,B_DDIT3:-0.707117771582;FOSL2:-0.723287612922;HMGA1,2:-0.760148907526;RBPJ:-0.760434456615;MED-1{core}:-0.772771903356;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.774277926537;FOS_FOS{B,L1}_JUN{B,D}:-0.779753465676;HLF:-0.793086848352;REST:-0.800607504973;NKX2-2,8:-0.811845649878;BACH2:-0.813108884315;ZNF384:-0.818640551395;PAX5:-0.857279186646;MZF1:-0.867339674129;RXRA_VDR{dimer}:-0.86819095641;GFI1:-0.898773899162;SOX{8,9,10}:-0.900961398372;ALX4:-0.903836353208;FOXP3:-0.934705150632;ZNF148:-0.935239492787;NKX2-3_NKX2-5:-0.93879959702;RXR{A,B,G}:-0.967814569823;FOXM1:-0.972130328903;NFE2:-0.989262641727;ZNF423:-1.00074555227;UFEwm:-1.00274236141;LHX3,4:-1.02265190817;ZFP161:-1.05760399668;GCM1,2:-1.09087092225;SRF:-1.11270835126;ZBTB6:-1.11289235434;HOX{A5,B5}:-1.11330811385;MTE{core}:-1.14316601717;ONECUT1,2:-1.15185224621;ZNF238:-1.15198940713;ARID5B:-1.15288688976;CDC5L:-1.15342182518;KLF4:-1.15582231787;SOX17:-1.1648264878;TP53:-1.18321771429;bHLH_family:-1.18894276992;GATA4:-1.19373790479;NR1H4:-1.19410011134;MTF1:-1.22807142914;TFAP4:-1.25085117234;GZF1:-1.26415579596;PRDM1:-1.32817673099;EN1,2:-1.3607079086;PATZ1:-1.37675020343;MYBL2:-1.38253450021;NR3C1:-1.41076600843;TFCP2:-1.46530374141;NFE2L2:-1.47678779628;XBP1:-1.48885557367;HIC1:-1.50494781819;HOX{A4,D4}:-1.51927630408;POU5F1:-1.53474597365;PAX8:-1.55740590447;ESR1:-1.59189366314;TEAD1:-1.59692714746;TEF:-1.60144125148;GTF2I:-1.61529430644;MAZ:-1.62762041486;EBF1:-1.64492101552;GTF2A1,2:-1.64987282384;XCPE1{core}:-1.67235933483;NKX3-2:-1.69348289463;TLX1..3_NFIC{dimer}:-1.71438104099;TFAP2B:-1.76128108733;ZIC1..3:-1.80909488298;ESRRA:-1.81368153932;TFDP1:-1.9199593927;PAX1,9:-1.95910249057;TBP:-1.97537542152;SP1:-2.02738623085;TFAP2{A,C}:-2.07571116447;HSF1,2:-2.64570675183;IKZF1:-2.75319095604
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11906-125F7;search_select_hide=table117:FF:11906-125F7
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:CD4+CD25-CD45RA+ naive conventional T cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13512
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number33-34
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005907
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13512 CAGE DRX008192 DRR009064
Accession ID Hg19

Library idBAMCTSS
CNhs13512 DRZ000489 DRZ001874
Accession ID Hg38

Library idBAMCTSS
CNhs13512 DRZ011839 DRZ013224
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0899
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
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C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Jaspar motifP-value
MA0002.22.2638e-4
MA0003.10.521
MA0004.10.847
MA0006.10.111
MA0007.10.735
MA0009.10.255
MA0014.10.854
MA0017.10.504
MA0018.21.67183e-4
MA0019.10.509
MA0024.10.3
MA0025.10.931
MA0027.10.652
MA0028.10.00268
MA0029.10.478
MA0030.10.176
MA0031.10.00361
MA0035.20.355
MA0038.10.0263
MA0039.20.448
MA0040.10.206
MA0041.10.24
MA0042.10.728
MA0043.10.343
MA0046.10.291
MA0047.20.242
MA0048.10.825
MA0050.10.00176
MA0051.10.111
MA0052.10.0326
MA0055.10.953
MA0057.10.673
MA0058.10.936
MA0059.10.424
MA0060.10.0353
MA0061.10.2
MA0062.23.10349e-11
MA0065.20.149
MA0066.10.666
MA0067.10.275
MA0068.10.31
MA0069.10.787
MA0070.10.397
MA0071.10.975
MA0072.10.984
MA0073.10.989
MA0074.10.507
MA0076.14.94123e-5
MA0077.10.0446
MA0078.10.88
MA0079.20.318
MA0080.23.11381e-9
MA0081.10.0971
MA0083.10.0134
MA0084.10.572
MA0087.10.415
MA0088.10.309
MA0090.10.0037
MA0091.10.984
MA0092.10.819
MA0093.10.951
MA0099.29.01207e-8
MA0100.10.664
MA0101.10.521
MA0102.20.41
MA0103.10.0648
MA0104.20.0842
MA0105.12.91278e-4
MA0106.10.117
MA0107.10.185
MA0108.22.42186e-12
MA0111.10.125
MA0112.20.316
MA0113.10.874
MA0114.10.766
MA0115.10.907
MA0116.10.00108
MA0117.10.374
MA0119.10.66
MA0122.10.797
MA0124.10.0958
MA0125.10.0615
MA0131.10.145
MA0135.10.0221
MA0136.14.45693e-17
MA0137.20.205
MA0138.20.926
MA0139.10.0526
MA0140.10.39
MA0141.10.743
MA0142.10.173
MA0143.10.295
MA0144.10.549
MA0145.10.156
MA0146.10.395
MA0147.10.0706
MA0148.10.329
MA0149.10.124
MA0150.10.0678
MA0152.18.90041e-4
MA0153.10.458
MA0154.10.114
MA0155.10.496
MA0156.12.25458e-14
MA0157.10.00228
MA0159.10.283
MA0160.10.884
MA0162.10.64
MA0163.16.69817e-8
MA0164.10.845
MA0258.10.223
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13512

Novel motifP-value
10.19
100.00785
1000.47
1010.12
1020.702
1030.31
1040.736
1050.701
1060.591
1070.0635
1080.975
1090.164
110.148
1100.743
1110.316
1120.612
1130.181
1140.189
1150.227
1160.794
1170.00114
1180.248
1190.637
120.779
1200.733
1210.829
1220.734
1237.48709e-6
1240.524
1250.769
1260.96
1270.85
1280.919
1290.421
130.48
1300.315
1310.236
1320.951
1330.446
1340.572
1350.789
1360.663
1370.0475
1380.291
1390.0268
140.512
1400.0262
1410.433
1420.397
1430.0152
1440.737
1450.605
1460.436
1470.0568
1480.087
1490.708
150.185
1500.76
1510.439
1520.169
1530.708
1540.336
1550.0415
1560.992
1570.887
1580.00356
1590.872
160.594
1600.828
1610.387
1620.314
1630.61
1640.0404
1650.789
1660.75
1670.0473
1680.92
1690.835
170.826
180.931
190.204
20.545
200.488
210.341
220.576
230.533
240.596
250.124
260.45
270.349
280.69
290.0248
30.13
300.0962
310.777
320.111
330.269
340.423
350.0323
360.0211
370.306
380.919
390.229
40.776
400.71
410.229
420.113
430.289
440.72
450.38
460.255
470.0919
480.267
490.0404
50.452
500.483
510.691
520.443
530.4
540.931
550.222
560.722
570.389
580.117
590.773
60.838
600.517
610.0796
620.0646
630.703
640.318
650.982
660.594
670.857
680.541
690.977
70.378
700.00934
710.0482
720.183
730.855
740.41
750.00547
760.113
770.0807
780.372
790.821
80.722
800.0447
810.174
820.191
830.651
840.557
850.688
860.228
870.479
880.891
890.241
90.788
900.00721
910.384
920.393
930.468
940.152
950.422
960.349
970.443
980.0611
990.00278



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13512


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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