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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004915
|accession_numbers=CAGE;DRX008569;DRR009441;DRZ000866;DRZ002251;DRZ012216;DRZ013601
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.96!912.78!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.29!192.12!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.25!175.78!INSM1;;chr9:102584262..102584276,+!p1@NR4A3!1.88!162.23!NR4A3;;chr19:50922187..50922204,+!p1@SPIB!1.79!61.25!SPIB;;chr4:185395590..185395627,-!p3@IRF2!1.67!56.87!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.67!46.10!RUNX3;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.92!RUNX3;;chr2:61108808..61108821,+!p3@REL!1.64!52.88!REL;;chr2:61108695..61108753,+!p1@REL!1.62!265.20!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.60!72.81!NR4A3;;chr6:106534192..106534224,+!p1@PRDM1!1.51!86.63!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.47!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.50!30.29!PLEK;;chr1:157108130..157108173,-!p1@ETV3!1.47!198.10!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.30!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.44!26.44!IKZF1;;chr10:104155480..104155534,+!p2@NFKB2!1.42!160.10!NFKB2;;chr2:61108771..61108789,+!p4@REL!1.41!37.20!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.41!24.98!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.37!30.43!STAT4;;chr7:50344289..50344323,+!p1@IKZF1!1.37!22.32!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!1.35!32.82!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.34!52.08!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.33!43.58!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.33!20.59!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.31!93.27!ETV6;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.27!ZNF366;;chr2:8822176..8822196,+!p1@ID2!1.28!2478.99!ID2;;chr19:45579725..45579743,-!p1@ZNF296!1.28!78.92!ZNF296;;chr4:185395633..185395651,-!p2@IRF2!1.28!28.57!IRF2;;chr15:90544532..90544563,+!p1@ZNF710!1.27!34.94!ZNF710;;chr10:35484053..35484076,+!p1@CREM!1.26!42.38!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.25!16.87!IKZF2;;chr1:8935472..8935488,-!p20@ENO1!1.21!15.28!ENO1;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.71!IKZF2;;chr2:169312725..169312810,+!p1@CERS6!1.19!348.24!CERS6;;chr16:31885093..31885165,+!p1@ZNF267!1.18!213.25!ZNF267;;chr4:103422499..103422632,+!p1@NFKB1!1.16!275.16!NFKB1;;chr19:3574157..3574180,+!p4@HMG20B!1.15!13.29!HMG20B;;chr9:102584278..102584285,+!p5@NR4A3!1.15!13.29!NR4A3;;chr10:104155659..104155676,+!p4@NFKB2!1.13!15.68!NFKB2;;chr7:150102756..150102772,+!p5@ZNF775!1.13!12.36!ZNF775;;chr2:61108878..61108891,+!p5@REL!1.12!12.22!REL;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.69!ETV3;;chrX:56258844..56258882,+!p1@KLF8!1.09!15.68!KLF8;;chr19:50432132..50432217,+!p2@ATF5!1.08!13.02!ATF5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.16!ELF1;;chr19:50432453..50432468,+!p1@ATF5!1.04!568.53!ATF5;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.90!AKNA;;chr11:47237922..47237964,+!p4@DDB2!1.04!11.43!DDB2;;chr12:27485785..27485816,+!p1@ARNTL2!1.03!69.09!ARNTL2;;chr2:61108650..61108687,+!p2@REL!1.01!46.50!REL;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.17!IRF8;;chr4:103478257..103478273,+!p28@NFKB1!1.00!9.03!NFKB1;;chr19:3574330..3574393,+!p2@HMG20B!1.00!8.90!HMG20B;;chr2:74229812..74229867,+!p1@TET3!0.99!22.32!TET3;;chr20:62462566..62462631,-!p1@ZBTB46!0.99!17.01!ZBTB46;;chr7:106810484..106810494,+!p4@HBP1!0.99!8.77!HBP1;;chr19:45504688..45504782,+!p1@RELB!0.98!53.28!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.98!53.28!NFKB2;;chr6:12012170..12012245,+!p1@HIVEP1!0.98!43.98!HIVEP1;;chr10:51572339..51572376,+!p4@NCOA4!0.98!19.53!NCOA4;;chr1:212782094..212782109,+!p1@ATF3!0.95!225.34!ATF3;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!11.96!ZNF385A;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.63!STAT4;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.77!PPARG;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.57!KLF8;;chr15:50647274..50647336,-!p1@GABPB1!0.92!52.88!GABPB1;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.22!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.29!HLX;;chr11:13299319..13299424,+!p1@ARNTL!0.90!74.14!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.90!60.72!KLF6;;chr5:321810..321877,+!p1@AHRR!0.90!22.85!AHRR;;chr12:27485823..27485868,+!p2@ARNTL2!0.89!28.96!ARNTL2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.65!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.89!9.83!NFKBIZ;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.64!IKZF2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.87!8.37!ZC3H7B;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.97!THAP3;;chr1:221052840..221052875,+!p4@HLX!0.86!7.57!HLX;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!0.84!5.98!IKZF2;;chr11:47399996..47400014,-!p4@SPI1!0.84!5.98!SPI1;;chr14:89883509..89883587,-!p2@FOXN3!0.83!42.52!FOXN3;;chr12:27485762..27485776,+!p3@ARNTL2!0.83!16.48!ARNTL2;;chr1:157108764..157108776,-!p7@ETV3!0.83!5.71!ETV3;;chr2:239148671..239148686,-!p1@HES6!0.82!22.06!HES6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.82!16.21!ZC3H7B;;chr2:231090433..231090469,+!p1@SP140!0.82!5.58!SP140;;chr12:54778471..54778528,-!p1@ZNF385A!0.82!5.58!ZNF385A;;chr3:5021113..5021180,+!p1@BHLHE40!0.81!408.69!BHLHE40;;chr6:12012249..12012266,+!p5@HIVEP1!0.81!9.83!HIVEP1;;chr19:3573282.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|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.96!912.78!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.29!192.12!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.25!175.78!INSM1;;chr9:102584262..102584276,+!p1@NR4A3!1.88!162.23!NR4A3;;chr19:50922187..50922204,+!p1@SPIB!1.79!61.25!SPIB;;chr4:185395590..185395627,-!p3@IRF2!1.67!56.87!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.67!46.10!RUNX3;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.92!RUNX3;;chr2:61108808..61108821,+!p3@REL!1.64!52.88!REL;;chr2:61108695..61108753,+!p1@REL!1.62!265.20!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.60!72.81!NR4A3;;chr6:106534192..106534224,+!p1@PRDM1!1.51!86.63!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.47!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.50!30.29!PLEK;;chr1:157108130..157108173,-!p1@ETV3!1.47!198.10!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.30!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.44!26.44!IKZF1;;chr10:104155480..104155534,+!p2@NFKB2!1.42!160.10!NFKB2;;chr2:61108771..61108789,+!p4@REL!1.41!37.20!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.41!24.98!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.37!30.43!STAT4;;chr7:50344289..50344323,+!p1@IKZF1!1.37!22.32!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!1.35!32.82!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.34!52.08!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.33!43.58!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.33!20.59!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.31!93.27!ETV6;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.27!ZNF366;;chr2:8822176..8822196,+!p1@ID2!1.28!2478.99!ID2;;chr19:45579725..45579743,-!p1@ZNF296!1.28!78.92!ZNF296;;chr4:185395633..185395651,-!p2@IRF2!1.28!28.57!IRF2;;chr15:90544532..90544563,+!p1@ZNF710!1.27!34.94!ZNF710;;chr10:35484053..35484076,+!p1@CREM!1.26!42.38!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.25!16.87!IKZF2;;chr1:8935472..8935488,-!p20@ENO1!1.21!15.28!ENO1;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.71!IKZF2;;chr2:169312725..169312810,+!p1@CERS6!1.19!348.24!CERS6;;chr16:31885093..31885165,+!p1@ZNF267!1.18!213.25!ZNF267;;chr4:103422499..103422632,+!p1@NFKB1!1.16!275.16!NFKB1;;chr19:3574157..3574180,+!p4@HMG20B!1.15!13.29!HMG20B;;chr9:102584278..102584285,+!p5@NR4A3!1.15!13.29!NR4A3;;chr10:104155659..104155676,+!p4@NFKB2!1.13!15.68!NFKB2;;chr7:150102756..150102772,+!p5@ZNF775!1.13!12.36!ZNF775;;chr2:61108878..61108891,+!p5@REL!1.12!12.22!REL;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.69!ETV3;;chrX:56258844..56258882,+!p1@KLF8!1.09!15.68!KLF8;;chr19:50432132..50432217,+!p2@ATF5!1.08!13.02!ATF5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.16!ELF1;;chr19:50432453..50432468,+!p1@ATF5!1.04!568.53!ATF5;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.90!AKNA;;chr11:47237922..47237964,+!p4@DDB2!1.04!11.43!DDB2;;chr12:27485785..27485816,+!p1@ARNTL2!1.03!69.09!ARNTL2;;chr2:61108650..61108687,+!p2@REL!1.01!46.50!REL;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.17!IRF8;;chr4:103478257..103478273,+!p28@NFKB1!1.00!9.03!NFKB1;;chr19:3574330..3574393,+!p2@HMG20B!1.00!8.90!HMG20B;;chr2:74229812..74229867,+!p1@TET3!0.99!22.32!TET3;;chr20:62462566..62462631,-!p1@ZBTB46!0.99!17.01!ZBTB46;;chr7:106810484..106810494,+!p4@HBP1!0.99!8.77!HBP1;;chr19:45504688..45504782,+!p1@RELB!0.98!53.28!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.98!53.28!NFKB2;;chr6:12012170..12012245,+!p1@HIVEP1!0.98!43.98!HIVEP1;;chr10:51572339..51572376,+!p4@NCOA4!0.98!19.53!NCOA4;;chr1:212782094..212782109,+!p1@ATF3!0.95!225.34!ATF3;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!11.96!ZNF385A;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.63!STAT4;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.77!PPARG;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.57!KLF8;;chr15:50647274..50647336,-!p1@GABPB1!0.92!52.88!GABPB1;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.22!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.29!HLX;;chr11:13299319..13299424,+!p1@ARNTL!0.90!74.14!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.90!60.72!KLF6;;chr5:321810..321877,+!p1@AHRR!0.90!22.85!AHRR;;chr12:27485823..27485868,+!p2@ARNTL2!0.89!28.96!ARNTL2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.65!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.89!9.83!NFKBIZ;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.64!IKZF2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.87!8.37!ZC3H7B;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.97!THAP3;;chr1:221052840..221052875,+!p4@HLX!0.86!7.57!HLX;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!0.84!5.98!IKZF2;;chr11:47399996..47400014,-!p4@SPI1!0.84!5.98!SPI1;;chr14:89883509..89883587,-!p2@FOXN3!0.83!42.52!FOXN3;;chr12:27485762..27485776,+!p3@ARNTL2!0.83!16.48!ARNTL2;;chr1:157108764..157108776,-!p7@ETV3!0.83!5.71!ETV3;;chr2:239148671..239148686,-!p1@HES6!0.82!22.06!HES6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.82!16.21!ZC3H7B;;chr2:231090433..231090469,+!p1@SP140!0.82!5.58!SP140;;chr12:54778471..54778528,-!p1@ZNF385A!0.82!5.58!ZNF385A;;chr3:5021113..5021180,+!p1@BHLHE40!0.81!408.69!BHLHE40;;chr6:12012249..12012266,+!p5@HIVEP1!0.81!9.83!HIVEP1;;chr19:3573282.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990
|ffid_belonging_in_development=CL:0000049,CL:0000134
|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.ctss.bed.gz
|id=FF:11902-125F3
|id=FF:11902-125F3
|is_a=EFO:0002091;;FF:0011136
|is_a=EFO:0002091;;FF:0011136
|is_obsolete=
|is_obsolete=
|library_id=CNhs13536
|library_id_phase_based=2:CNhs13536
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11902
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11902
|name=migratory langerhans cells, donor2
|name=migratory langerhans cells, donor2
|namespace=
|namespace=
Line 46: Line 61:
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|profile_cagescan=,,,
|profile_hcage=CNhs13536,LSID1029,release012,COMPLETED
|profile_hcage=CNhs13536,LSID1029,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 63: Line 79:
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|sample_cell_line=
Line 84: Line 101:
|top_motifs=FOX{F1,F2,J1}:2.11912514691;HSF1,2:1.86867766768;NFKB1_REL_RELA:1.42773237227;TLX2:1.34860115029;FOXP3:1.31714257941;FOXA2:1.0524641118;FOXN1:1.05221812718;SPZ1:1.02415817948;CDX1,2,4:0.983811093108;SREBF1,2:0.92276189151;RUNX1..3:0.865054945317;POU1F1:0.826297836974;PAX6:0.814755211148;NFIX:0.809752064974;ATF5_CREB3:0.802327217886;STAT5{A,B}:0.76243402151;OCT4_SOX2{dimer}:0.735691071556;ATF2:0.715372851337;EVI1:0.689842923108;CRX:0.652620937206;STAT1,3:0.624680708232;IRF1,2:0.601378402736;NANOG{mouse}:0.597618846471;HMX1:0.547698874129;BPTF:0.541637412709;SPI1:0.53479718905;FOSL2:0.478038314971;GLI1..3:0.474809800264;ESR1:0.461016891131;PAX2:0.452225234606;ESRRA:0.445841320276;DMAP1_NCOR{1,2}_SMARC:0.442195363254;RORA:0.438074687539;ARID5B:0.422820240503;NFE2L2:0.413490705292;HOXA9_MEIS1:0.408438448698;ZNF148:0.396427907128;ELF1,2,4:0.332430385154;PRRX1,2:0.318923327677;FOXQ1:0.317153333956;ZBTB16:0.314194027045;NFE2:0.302616583118;SPIB:0.297208911799;RFX2..5_RFXANK_RFXAP:0.283097437128;HNF4A_NR2F1,2:0.247053471338;PDX1:0.240967826934;CUX2:0.227186783672;SRF:0.220981179517;NKX2-2,8:0.208093366735;AHR_ARNT_ARNT2:0.197055175108;NKX6-1,2:0.195251176244;LMO2:0.192296270928;NR5A1,2:0.172799179152;JUN:0.172344634439;IKZF2:0.168266083763;EP300:0.159047984224;ETS1,2:0.153142151885;FOX{D1,D2}:0.143158492495;LHX3,4:0.13067734128;HAND1,2:0.117929105535;ATF4:0.0998016819886;GATA6:0.0979397233002;TGIF1:0.0934463714812;SNAI1..3:0.0921174252838;TFCP2:0.0902806242142;NFE2L1:0.0711071769833;HMGA1,2:0.0696667744339;BACH2:0.0632624859365;NANOG:0.0487020033057;ZEB1:0.0321808127267;MYB:0.0164972613693;POU3F1..4:-0.0107409976278;SOX2:-0.0175914574477;ALX4:-0.0255881929362;HOX{A6,A7,B6,B7}:-0.0385550985313;SOX5:-0.0417766992761;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.045258672492;RXRA_VDR{dimer}:-0.0480429518305;ALX1:-0.0575514385926;CREB1:-0.074701828102;YY1:-0.0786596516068;ELK1,4_GABP{A,B1}:-0.0882803183824;NFY{A,B,C}:-0.0896125987243;AR:-0.100301779303;MYFfamily:-0.112552187167;ZFP161:-0.118034982975;SP1:-0.124870721616;ZNF238:-0.12521051949;SOX17:-0.149312709349;POU2F1..3:-0.1496441849;HNF1A:-0.199073227866;IRF7:-0.2008376394;STAT2,4,6:-0.207264305546;PBX1:-0.208702375494;MAZ:-0.216323294177;PAX4:-0.22648379633;FOS_FOS{B,L1}_JUN{B,D}:-0.231496752237;FOXM1:-0.236143338896;NKX2-3_NKX2-5:-0.238341639504;TAL1_TCF{3,4,12}:-0.269757922227;MYOD1:-0.282304413273;TP53:-0.291982087721;ONECUT1,2:-0.30638562061;NRF1:-0.312102625897;MEF2{A,B,C,D}:-0.318753305278;XCPE1{core}:-0.330774980779;MTE{core}:-0.333849149137;ZNF143:-0.337825392248;NFIL3:-0.348759973864;MAFB:-0.349055269339;PAX8:-0.384348138442;ATF6:-0.389040811355;LEF1_TCF7_TCF7L1,2:-0.397039916547;SMAD1..7,9:-0.406461470765;MED-1{core}:-0.416189390335;VSX1,2:-0.41968791781;NHLH1,2:-0.427601477613;BREu{core}:-0.446777883088;GFI1B:-0.451450309693;AIRE:-0.470357617122;NFATC1..3:-0.487363661335;POU5F1:-0.494785484829;RFX1:-0.497107304981;NR1H4:-0.49869780464;HLF:-0.509295571811;MYBL2:-0.512031672503;HBP1_HMGB_SSRP1_UBTF:-0.513524615336;NR6A1:-0.522261910166;NKX3-1:-0.538670335008;TBP:-0.555091206865;FOXO1,3,4:-0.561859817324;EGR1..3:-0.5651224926;FOXP1:-0.566449957435;TFAP4:-0.56984136571;ZIC1..3:-0.589111230235;FOX{I1,J2}:-0.593950985805;TBX4,5:-0.635184735644;TFDP1:-0.635841055338;E2F1..5:-0.650436414963;CEBPA,B_DDIT3:-0.654219379502;EN1,2:-0.660982052007;HOX{A5,B5}:-0.661138764673;MTF1:-0.667259352671;UFEwm:-0.684260846937;HOX{A4,D4}:-0.696666994341;NKX3-2:-0.69771508232;EBF1:-0.723074559552;ZBTB6:-0.725565475443;PAX5:-0.746021719344;TFAP2{A,C}:-0.755578690007;XBP1:-0.766031400019;PAX3,7:-0.783271853731;TFAP2B:-0.797993301298;NR3C1:-0.807621632702;HES1:-0.829920382;CDC5L:-0.851433407549;GATA4:-0.872191630023;SOX{8,9,10}:-0.879714939402;HIC1:-0.885626358388;TEAD1:-0.895112479255;GTF2A1,2:-0.901895838423;GZF1:-0.912601840659;MZF1:-0.921182233234;TLX1..3_NFIC{dimer}:-0.928608762784;HIF1A:-0.956420840255;RBPJ:-0.978392659974;ADNP_IRX_SIX_ZHX:-0.984617887559;PITX1..3:-0.995887254762;GFI1:-1.05088748461;TEF:-1.07990707506;IKZF1:-1.11239454767;NKX2-1,4:-1.12612238537;PATZ1:-1.14735102096;ZNF423:-1.1729079934;RREB1:-1.17455527995;GTF2I:-1.18260636138;TOPORS:-1.19293812844;REST:-1.20570283964;PPARG:-1.21601039574;KLF4:-1.22627063799;POU6F1:-1.30337124901;PRDM1:-1.3655153905;T:-1.42189206117;bHLH_family:-1.43241432493;ZNF384:-1.54125004232;GCM1,2:-1.55184430285;PAX1,9:-1.64485073464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64504483991;FOXL1:-1.77405316785;DBP:-1.78902363047;RXR{A,B,G}:-1.86713315567;FOXD3:-2.00700519208
|top_motifs=FOX{F1,F2,J1}:2.11912514691;HSF1,2:1.86867766768;NFKB1_REL_RELA:1.42773237227;TLX2:1.34860115029;FOXP3:1.31714257941;FOXA2:1.0524641118;FOXN1:1.05221812718;SPZ1:1.02415817948;CDX1,2,4:0.983811093108;SREBF1,2:0.92276189151;RUNX1..3:0.865054945317;POU1F1:0.826297836974;PAX6:0.814755211148;NFIX:0.809752064974;ATF5_CREB3:0.802327217886;STAT5{A,B}:0.76243402151;OCT4_SOX2{dimer}:0.735691071556;ATF2:0.715372851337;EVI1:0.689842923108;CRX:0.652620937206;STAT1,3:0.624680708232;IRF1,2:0.601378402736;NANOG{mouse}:0.597618846471;HMX1:0.547698874129;BPTF:0.541637412709;SPI1:0.53479718905;FOSL2:0.478038314971;GLI1..3:0.474809800264;ESR1:0.461016891131;PAX2:0.452225234606;ESRRA:0.445841320276;DMAP1_NCOR{1,2}_SMARC:0.442195363254;RORA:0.438074687539;ARID5B:0.422820240503;NFE2L2:0.413490705292;HOXA9_MEIS1:0.408438448698;ZNF148:0.396427907128;ELF1,2,4:0.332430385154;PRRX1,2:0.318923327677;FOXQ1:0.317153333956;ZBTB16:0.314194027045;NFE2:0.302616583118;SPIB:0.297208911799;RFX2..5_RFXANK_RFXAP:0.283097437128;HNF4A_NR2F1,2:0.247053471338;PDX1:0.240967826934;CUX2:0.227186783672;SRF:0.220981179517;NKX2-2,8:0.208093366735;AHR_ARNT_ARNT2:0.197055175108;NKX6-1,2:0.195251176244;LMO2:0.192296270928;NR5A1,2:0.172799179152;JUN:0.172344634439;IKZF2:0.168266083763;EP300:0.159047984224;ETS1,2:0.153142151885;FOX{D1,D2}:0.143158492495;LHX3,4:0.13067734128;HAND1,2:0.117929105535;ATF4:0.0998016819886;GATA6:0.0979397233002;TGIF1:0.0934463714812;SNAI1..3:0.0921174252838;TFCP2:0.0902806242142;NFE2L1:0.0711071769833;HMGA1,2:0.0696667744339;BACH2:0.0632624859365;NANOG:0.0487020033057;ZEB1:0.0321808127267;MYB:0.0164972613693;POU3F1..4:-0.0107409976278;SOX2:-0.0175914574477;ALX4:-0.0255881929362;HOX{A6,A7,B6,B7}:-0.0385550985313;SOX5:-0.0417766992761;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.045258672492;RXRA_VDR{dimer}:-0.0480429518305;ALX1:-0.0575514385926;CREB1:-0.074701828102;YY1:-0.0786596516068;ELK1,4_GABP{A,B1}:-0.0882803183824;NFY{A,B,C}:-0.0896125987243;AR:-0.100301779303;MYFfamily:-0.112552187167;ZFP161:-0.118034982975;SP1:-0.124870721616;ZNF238:-0.12521051949;SOX17:-0.149312709349;POU2F1..3:-0.1496441849;HNF1A:-0.199073227866;IRF7:-0.2008376394;STAT2,4,6:-0.207264305546;PBX1:-0.208702375494;MAZ:-0.216323294177;PAX4:-0.22648379633;FOS_FOS{B,L1}_JUN{B,D}:-0.231496752237;FOXM1:-0.236143338896;NKX2-3_NKX2-5:-0.238341639504;TAL1_TCF{3,4,12}:-0.269757922227;MYOD1:-0.282304413273;TP53:-0.291982087721;ONECUT1,2:-0.30638562061;NRF1:-0.312102625897;MEF2{A,B,C,D}:-0.318753305278;XCPE1{core}:-0.330774980779;MTE{core}:-0.333849149137;ZNF143:-0.337825392248;NFIL3:-0.348759973864;MAFB:-0.349055269339;PAX8:-0.384348138442;ATF6:-0.389040811355;LEF1_TCF7_TCF7L1,2:-0.397039916547;SMAD1..7,9:-0.406461470765;MED-1{core}:-0.416189390335;VSX1,2:-0.41968791781;NHLH1,2:-0.427601477613;BREu{core}:-0.446777883088;GFI1B:-0.451450309693;AIRE:-0.470357617122;NFATC1..3:-0.487363661335;POU5F1:-0.494785484829;RFX1:-0.497107304981;NR1H4:-0.49869780464;HLF:-0.509295571811;MYBL2:-0.512031672503;HBP1_HMGB_SSRP1_UBTF:-0.513524615336;NR6A1:-0.522261910166;NKX3-1:-0.538670335008;TBP:-0.555091206865;FOXO1,3,4:-0.561859817324;EGR1..3:-0.5651224926;FOXP1:-0.566449957435;TFAP4:-0.56984136571;ZIC1..3:-0.589111230235;FOX{I1,J2}:-0.593950985805;TBX4,5:-0.635184735644;TFDP1:-0.635841055338;E2F1..5:-0.650436414963;CEBPA,B_DDIT3:-0.654219379502;EN1,2:-0.660982052007;HOX{A5,B5}:-0.661138764673;MTF1:-0.667259352671;UFEwm:-0.684260846937;HOX{A4,D4}:-0.696666994341;NKX3-2:-0.69771508232;EBF1:-0.723074559552;ZBTB6:-0.725565475443;PAX5:-0.746021719344;TFAP2{A,C}:-0.755578690007;XBP1:-0.766031400019;PAX3,7:-0.783271853731;TFAP2B:-0.797993301298;NR3C1:-0.807621632702;HES1:-0.829920382;CDC5L:-0.851433407549;GATA4:-0.872191630023;SOX{8,9,10}:-0.879714939402;HIC1:-0.885626358388;TEAD1:-0.895112479255;GTF2A1,2:-0.901895838423;GZF1:-0.912601840659;MZF1:-0.921182233234;TLX1..3_NFIC{dimer}:-0.928608762784;HIF1A:-0.956420840255;RBPJ:-0.978392659974;ADNP_IRX_SIX_ZHX:-0.984617887559;PITX1..3:-0.995887254762;GFI1:-1.05088748461;TEF:-1.07990707506;IKZF1:-1.11239454767;NKX2-1,4:-1.12612238537;PATZ1:-1.14735102096;ZNF423:-1.1729079934;RREB1:-1.17455527995;GTF2I:-1.18260636138;TOPORS:-1.19293812844;REST:-1.20570283964;PPARG:-1.21601039574;KLF4:-1.22627063799;POU6F1:-1.30337124901;PRDM1:-1.3655153905;T:-1.42189206117;bHLH_family:-1.43241432493;ZNF384:-1.54125004232;GCM1,2:-1.55184430285;PAX1,9:-1.64485073464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64504483991;FOXL1:-1.77405316785;DBP:-1.78902363047;RXR{A,B,G}:-1.86713315567;FOXD3:-2.00700519208
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11902-125F3;search_select_hide=table117:FF:11902-125F3
}}
}}

Latest revision as of 18:28, 4 June 2020

Name:migratory langerhans cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13536
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typelangerhans cell
cell lineNA
companyNA
collaborationTeunis Geijtenbeek
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberLC-B
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004915
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13536 CAGE DRX008569 DRR009441
Accession ID Hg19

Library idBAMCTSS
CNhs13536 DRZ000866 DRZ002251
Accession ID Hg38

Library idBAMCTSS
CNhs13536 DRZ012216 DRZ013601
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.286
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0523
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0542
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0757
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage1.013
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00941
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0376
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0507
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.277
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.26
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.547
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0542
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0542
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0677
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.193
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0542
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.459
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0951
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.052
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.152
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0.905
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0.102
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13536

Jaspar motifP-value
MA0002.24.10112e-5
MA0003.10.944
MA0004.10.359
MA0006.10.617
MA0007.10.891
MA0009.10.179
MA0014.10.244
MA0017.10.00325
MA0018.20.584
MA0019.10.631
MA0024.10.0522
MA0025.10.133
MA0027.10.951
MA0028.10.71
MA0029.10.599
MA0030.10.854
MA0031.10.486
MA0035.20.332
MA0038.10.357
MA0039.20.00436
MA0040.10.777
MA0041.10.809
MA0042.10.913
MA0043.10.109
MA0046.10.361
MA0047.20.139
MA0048.10.808
MA0050.10.0618
MA0051.10.334
MA0052.10.325
MA0055.10.817
MA0057.10.647
MA0058.10.321
MA0059.10.428
MA0060.10.864
MA0061.12.0737e-16
MA0062.20.00559
MA0065.20.0127
MA0066.10.883
MA0067.10.0196
MA0068.10.0737
MA0069.10.687
MA0070.10.233
MA0071.10.109
MA0072.10.37
MA0073.10.542
MA0074.10.595
MA0076.10.874
MA0077.10.544
MA0078.10.629
MA0079.20.584
MA0080.25.0345e-8
MA0081.10.0648
MA0083.10.00222
MA0084.10.0743
MA0087.10.439
MA0088.10.317
MA0090.10.00342
MA0091.10.706
MA0092.10.802
MA0093.10.271
MA0099.20.0321
MA0100.10.592
MA0101.19.49061e-13
MA0102.20.717
MA0103.10.125
MA0104.20.27
MA0105.18.54809e-15
MA0106.10.642
MA0107.11.46951e-16
MA0108.28.4274e-4
MA0111.10.314
MA0112.20.00402
MA0113.10.896
MA0114.10.0132
MA0115.10.148
MA0116.10.00211
MA0117.10.322
MA0119.10.997
MA0122.10.271
MA0124.10.427
MA0125.10.485
MA0131.10.915
MA0135.10.787
MA0136.16.34737e-5
MA0137.20.865
MA0138.20.224
MA0139.10.129
MA0140.10.384
MA0141.10.0116
MA0142.10.329
MA0143.10.294
MA0144.10.963
MA0145.10.125
MA0146.10.105
MA0147.10.346
MA0148.10.976
MA0149.10.295
MA0150.11.98451e-4
MA0152.10.0874
MA0153.10.0476
MA0154.18.08174e-4
MA0155.10.193
MA0156.10.0425
MA0157.10.162
MA0159.10.0175
MA0160.10.00146
MA0162.10.963
MA0163.10.0339
MA0164.10.621
MA0258.10.0337
MA0259.10.609



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13536

Novel motifP-value
10.0487
100.0526
1000.659
1010.451
1020.427
1030.0269
1040.68
1050.0837
1060.00599
1070.68
1080.768
1090.0329
110.158
1100.397
1110.0792
1120.0304
1130.897
1140.0125
1150.165
1160.811
1170.0128
1180.181
1190.0102
120.367
1200.61
1210.75
1220.614
1230.596
1240.127
1250.928
1260.0747
1270.0855
1280.0157
1290.19
130.0898
1300.837
1310.659
1320.57
1330.905
1340.949
1350.353
1360.392
1370.0247
1380.809
1390.237
140.553
1400.0104
1410.924
1420.2
1430.119
1440.691
1450.366
1460.684
1470.286
1480.0214
1490.831
150.0261
1500.368
1510.621
1520.45
1530.532
1540.524
1550.0659
1560.498
1570.708
1580.298
1590.297
160.319
1600.934
1610.22
1620.651
1630.98
1640.617
1650.141
1660.68
1670.849
1680.649
1690.112
170.691
180.345
190.837
20.917
200.276
210.606
220.536
230.249
240.77
250.284
260.219
270.8
280.476
290.11
30.138
300.592
310.624
320.285
330.359
340.817
350.488
360.118
370.201
380.347
390.969
40.333
400.14
410.161
420.307
430.0794
440.0142
450.739
460.131
470.219
480.308
490.0668
50.548
500.956
510.304
520.0787
530.744
540.299
550.509
560.874
570.232
580.0577
590.185
60.939
600.0377
610.414
620.0483
630.466
640.483
650.371
660.0884
670.168
680.94
690.763
70.0647
700.0114
710.123
720.215
730.451
740.656
750.13
760.426
770.952
780.0488
790.971
80.463
800.739
810.382
820.157
830.147
840.299
850.221
860.255
870.0429
880.163
890.427
90.577
900.015
910.499
920.469
930.545
940.0657
950.0524
960.01
970.843
980.213
990.566



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13536


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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