FF:11884-125D3: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with Group A streptococci, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13492
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-5
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004883

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13492		CAGE		DRX008149		DRR009021

Accession ID Hg19

Library id		BAM		CTSS
CNhs13492		DRZ000446		DRZ001831

Accession ID Hg38

Library id		BAM		CTSS
CNhs13492		DRZ011796		DRZ013181

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	1.074
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0299
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.738
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.264
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.83
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.215
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.938
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.684
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.286
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.539
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.461
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0965
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.869
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.358
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.551
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.328
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.551
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.273
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.551
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.358
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.896
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.648
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.993
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.991
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.725
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.623
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.497
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.684
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	1.097
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.554
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.705
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.963
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.465
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.83
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.215
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.358
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.587
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.286
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.411
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.551
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.786
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.413
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.215
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.358
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.358
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.358
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13492

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.0201e-9
MA0003.1	MA0003.1	0.76
MA0004.1	MA0004.1	0.274
MA0006.1	MA0006.1	0.846
MA0007.1	MA0007.1	0.723
MA0009.1	MA0009.1	0.459
MA0014.1	MA0014.1	0.818
MA0017.1	MA0017.1	0.203
MA0018.2	MA0018.2	0.0192
MA0019.1	MA0019.1	0.611
MA0024.1	MA0024.1	0.0057
MA0025.1	MA0025.1	5.06774e-4
MA0027.1	MA0027.1	0.913
MA0028.1	MA0028.1	0.0977
MA0029.1	MA0029.1	0.155
MA0030.1	MA0030.1	0.21
MA0031.1	MA0031.1	0.318
MA0035.2	MA0035.2	0.291
MA0038.1	MA0038.1	0.608
MA0039.2	MA0039.2	0.588
MA0040.1	MA0040.1	0.637
MA0041.1	MA0041.1	0.632
MA0042.1	MA0042.1	0.898
MA0043.1	MA0043.1	4.45216e-9
MA0046.1	MA0046.1	0.00609
MA0047.2	MA0047.2	0.275
MA0048.1	MA0048.1	0.556
MA0050.1	MA0050.1	4.59005e-13
MA0051.1	MA0051.1	2.61777e-6
MA0052.1	MA0052.1	0.0231
MA0055.1	MA0055.1	0.405
MA0057.1	MA0057.1	0.378
MA0058.1	MA0058.1	0.111
MA0059.1	MA0059.1	0.142
MA0060.1	MA0060.1	9.54845e-9
MA0061.1	MA0061.1	2.38337e-15
MA0062.2	MA0062.2	0.833
MA0065.2	MA0065.2	0.0434
MA0066.1	MA0066.1	0.0225
MA0067.1	MA0067.1	3.83896e-6
MA0068.1	MA0068.1	0.577
MA0069.1	MA0069.1	0.964
MA0070.1	MA0070.1	0.0302
MA0071.1	MA0071.1	0.381
MA0072.1	MA0072.1	0.535
MA0073.1	MA0073.1	0.447
MA0074.1	MA0074.1	0.101
MA0076.1	MA0076.1	0.133
MA0077.1	MA0077.1	0.277
MA0078.1	MA0078.1	0.429
MA0079.2	MA0079.2	0.147
MA0080.2	MA0080.2	3.55867e-11
MA0081.1	MA0081.1	4.99422e-4
MA0083.1	MA0083.1	0.681
MA0084.1	MA0084.1	0.89
MA0087.1	MA0087.1	0.781
MA0088.1	MA0088.1	0.487
MA0090.1	MA0090.1	0.438
MA0091.1	MA0091.1	0.68
MA0092.1	MA0092.1	0.342
MA0093.1	MA0093.1	0.306
MA0099.2	MA0099.2	5.92922e-43
MA0100.1	MA0100.1	0.78
MA0101.1	MA0101.1	5.13168e-18
MA0102.2	MA0102.2	4.16404e-9
MA0103.1	MA0103.1	0.0543
MA0104.2	MA0104.2	0.304
MA0105.1	MA0105.1	2.29692e-20
MA0106.1	MA0106.1	0.809
MA0107.1	MA0107.1	2.67864e-22
MA0108.2	MA0108.2	0.678
MA0111.1	MA0111.1	0.395
MA0112.2	MA0112.2	3.74735e-4
MA0113.1	MA0113.1	0.978
MA0114.1	MA0114.1	0.231
MA0115.1	MA0115.1	0.722
MA0116.1	MA0116.1	3.03006e-4
MA0117.1	MA0117.1	0.0454
MA0119.1	MA0119.1	0.144
MA0122.1	MA0122.1	0.716
MA0124.1	MA0124.1	0.448
MA0125.1	MA0125.1	0.18
MA0131.1	MA0131.1	0.423
MA0135.1	MA0135.1	0.35
MA0136.1	MA0136.1	6.14602e-12
MA0137.2	MA0137.2	0.264
MA0138.2	MA0138.2	0.31
MA0139.1	MA0139.1	0.757
MA0140.1	MA0140.1	0.323
MA0141.1	MA0141.1	0.138
MA0142.1	MA0142.1	0.821
MA0143.1	MA0143.1	0.916
MA0144.1	MA0144.1	0.128
MA0145.1	MA0145.1	0.684
MA0146.1	MA0146.1	0.562
MA0147.1	MA0147.1	0.368
MA0148.1	MA0148.1	0.662
MA0149.1	MA0149.1	0.214
MA0150.1	MA0150.1	5.65606e-19
MA0152.1	MA0152.1	0.806
MA0153.1	MA0153.1	0.00197
MA0154.1	MA0154.1	1.65244e-4
MA0155.1	MA0155.1	0.95
MA0156.1	MA0156.1	6.2198e-8
MA0157.1	MA0157.1	0.834
MA0159.1	MA0159.1	0.0359
MA0160.1	MA0160.1	0.0676
MA0162.1	MA0162.1	0.97
MA0163.1	MA0163.1	5.5256e-8
MA0164.1	MA0164.1	0.69
MA0258.1	MA0258.1	0.0247
MA0259.1	MA0259.1	0.81

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13492

Novel motif	Logo	P-value
1	1	0.116
10	10	0.0209
100	100	0.926
101	101	0.766
102	102	0.943
103	103	0.296
104	104	0.49
105	105	0.124
106	106	7.01329e-4
107	107	0.23
108	108	0.665
109	109	0.37
11	11	0.193
110	110	0.214
111	111	0.0645
112	112	0.289
113	113	0.491
114	114	0.0182
115	115	0.267
116	116	0.99
117	117	0.0838
118	118	0.191
119	119	0.148
12	12	0.342
120	120	0.769
121	121	0.583
122	122	0.643
123	123	0.474
124	124	0.538
125	125	0.254
126	126	0.26
127	127	0.546
128	128	0.0458
129	129	0.346
13	13	0.0755
130	130	0.307
131	131	0.989
132	132	0.0776
133	133	0.693
134	134	0.531
135	135	0.867
136	136	0.907
137	137	0.0392
138	138	0.414
139	139	0.0748
14	14	0.571
140	140	0.631
141	141	0.263
142	142	0.0591
143	143	0.0235
144	144	0.487
145	145	0.404
146	146	0.792
147	147	0.838
148	148	0.0191
149	149	0.924
15	15	0.153
150	150	0.328
151	151	0.463
152	152	0.348
153	153	0.556
154	154	0.757
155	155	0.923
156	156	0.755
157	157	0.527
158	158	0.0393
159	159	0.127
16	16	0.362
160	160	0.516
161	161	0.37
162	162	0.181
163	163	0.182
164	164	0.112
165	165	0.288
166	166	0.7
167	167	0.208
168	168	0.191
169	169	0.0185
17	17	0.232
18	18	0.0821
19	19	0.529
2	2	0.471
20	20	0.16
21	21	0.802
22	22	0.353
23	23	0.0374
24	24	0.512
25	25	0.498
26	26	0.0709
27	27	0.446
28	28	0.364
29	29	0.265
3	3	0.168
30	30	0.425
31	31	0.761
32	32	0.411
33	33	0.265
34	34	0.845
35	35	0.1
36	36	0.0484
37	37	0.0674
38	38	0.378
39	39	0.796
4	4	0.845
40	40	0.191
41	41	0.0232
42	42	0.371
43	43	0.0213
44	44	0.584
45	45	0.864
46	46	0.231
47	47	0.629
48	48	0.558
49	49	0.118
5	5	0.297
50	50	0.984
51	51	0.511
52	52	0.395
53	53	0.688
54	54	0.498
55	55	0.655
56	56	0.71
57	57	0.906
58	58	0.17
59	59	0.252
6	6	0.857
60	60	0.0488
61	61	0.623
62	62	0.0962
63	63	0.51
64	64	0.466
65	65	0.234
66	66	0.226
67	67	0.474
68	68	0.68
69	69	0.475
7	7	0.238
70	70	0.0551
71	71	0.0266
72	72	0.16
73	73	0.2
74	74	0.0638
75	75	0.101
76	76	0.149
77	77	0.593
78	78	0.124
79	79	0.576
8	8	0.38
80	80	0.182
81	81	0.351
82	82	0.255
83	83	0.0249
84	84	0.116
85	85	0.0312
86	86	0.0516
87	87	0.567
88	88	0.797
89	89	0.293
9	9	0.36
90	90	0.136
91	91	0.335
92	92	0.322
93	93	0.497
94	94	0.0864
95	95	0.523
96	96	0.359
97	97	0.52
98	98	0.109
99	99	0.0508

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13492

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011106 human CD14-positive monocytes - treated with Group A streptococci sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004883
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008149;DRR009021;DRZ000446;DRZ001831;DRZ011796;DRZ013181
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0011106
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.61!4070.66!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.72!524.90!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.54!349.72!TFEC;;chr3:101546827..101546847,+!p2@NFKBIZ!2.51!446.90!NFKBIZ;;chr9:102584159..102584174,+!p2@NR4A3!2.50!548.55!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!2.48!394.47!THAP2;;chr2:70142232..70142251,+!p1@MXD1!2.45!1489.66!MXD1;;chr16:85932760..85932775,+!p1@IRF8!2.44!272.36!IRF8;;chr14:35872453..35872485,-!p2@NFKBIA!2.42!618.24!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.36!493.57!NR4A3;;chr19:45971246..45971265,+!p1@FOSB!2.32!3579.01!FOSB;;chr12:54778471..54778528,-!p1@ZNF385A!2.31!203.31!ZNF385A;;chr2:157189180..157189290,-!p1@NR4A2!2.23!833.06!NR4A2;;chr14:35873947..35873965,-!p1@NFKBIA!2.22!9686.60!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!2.21!7677.80!NFKBIZ;;chr10:35484053..35484076,+!p1@CREM!2.20!377.85!CREM;;chr11:47399947..47399961,-!p3@SPI1!2.19!154.08!SPI1;;chr12:52445218..52445237,+!p1@NR4A1!2.11!1494.77!NR4A1;;chr20:39317868..39317884,-!p1@MAFB!2.09!1340.69!MAFB;;chr11:47400062..47400077,-!p2@SPI1!2.08!120.20!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!2.03!2052.27!NFKB1;;chr6:106534192..106534224,+!p1@PRDM1!1.99!261.49!PRDM1;;chr10:64576105..64576133,-!p1@EGR2!1.99!193.72!EGR2;;chr10:64018918..64018936,+!p2@ZNF365!1.99!96.54!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.93!1196.20!ZNF267;;chr19:36391434..36391450,-!p1@NFKBID!1.92!157.28!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.91!109.33!STAT4;;chr9:102584128..102584144,+!p3@NR4A3!1.89!142.57!NR4A3;;chr1:212782094..212782109,+!p1@ATF3!1.86!1804.21!ATF3;;chr8:22550982..22550999,-!p1@EGR3!1.86!193.72!EGR3;;chrX:153305787..153305807,-!p3@MECP2!1.86!70.97!MECP2;;chr10:51572408..51572454,+!p3@NCOA4!1.85!383.60!NCOA4;;chr12:72056773..72056796,+!p3@THAP2!1.85!90.15!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.84!68.41!SPI1;;chr12:72056749..72056767,+!p6@THAP2!1.83!74.16!THAP2;;chr11:47399996..47400014,-!p4@SPI1!1.83!67.13!SPI1;;chr20:48599506..48599526,+!p1@SNAI1!1.81!382.96!SNAI1;;chr22:38597987..38598021,+!p2@MAFF!1.81!372.73!MAFF;;chr1:25256756..25256774,-!p1@RUNX3!1.81!116.36!RUNX3;;chr8:123793988..123794016,+!p1@ZHX2!1.81!109.33!ZHX2;;chr4:83822199..83822239,+!p2@THAP9!1.81!74.80!THAP9;;chr4:106066712..106066728,+!p8@TET2!1.80!62.02!TET2;;chr2:61108695..61108753,+!p1@REL!1.79!392.55!REL;;chr2:145275162..145275202,-!p2@ZEB2!1.79!337.57!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.78!362.50!NFKB2;;chr2:68592394..68592405,+!p2@PLEK!1.78!58.82!PLEK;;chr10:104155659..104155676,+!p4@NFKB2!1.77!71.61!NFKB2;;chr14:35872494..35872511,-!p5@NFKBIA!1.75!72.25!NFKBIA;;chr4:106066776..106066791,+!p9@TET2!1.74!53.70!TET2;;chr10:31288398..31288455,-!p2@ZNF438!1.73!60.74!ZNF438;;chr9:102584241..102584261,+!p4@NR4A3!1.72!79.28!NR4A3;;chr21:34442439..34442455,+!p1@OLIG1!1.71!50.51!OLIG1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.70!574.12!ZC3H12A;;chr3:150126101..150126118,+!p6@TSC22D2!1.70!79.28!TSC22D2;;chr19:54058073..54058088,+!p1@ZNF331!1.70!49.23!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.69!125.95!NFATC1;;chr2:145277640..145277771,-!p1@ZEB2!1.68!598.42!ZEB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.68!64.57!NFKBIA;;chr19:54041669..54041697,+!p2@ZNF331!1.67!45.39!ZNF331;;chr10:35484090..35484104,+!p6@CREM!1.66!44.75!CREM;;chr3:39195037..39195069,-!p2@CSRNP1!1.65!255.73!CSRNP1;;chr6:106534230..106534254,+!p2@PRDM1!1.65!106.77!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.65!43.47!ZNF438;;chr21:30671690..30671762,+!p2@BACH1!1.64!141.29!BACH1;;chr9:102584278..102584285,+!p5@NR4A3!1.64!42.20!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.64!42.20!ZNF385A;;chr10:104154246..104154347,+!p3@NFKB2!1.63!242.95!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.61!97.82!NFKBIA;;chr7:106809470..106809481,+!p2@HBP1!1.61!55.62!HBP1;;chr4:106066730..106066754,+!p6@TET2!1.60!39.00!TET2;;chr14:75745523..75745537,+!p1@FOS!1.59!4270.13!FOS;;chr18:3449330..3449344,+!p10@TGIF1!1.58!47.95!TGIF1;;chr19:50432132..50432217,+!p2@ATF5!1.58!43.47!ATF5;;chr4:106068026..106068084,+!p1@TET2!1.57!312.64!TET2;;chr2:61108808..61108821,+!p3@REL!1.56!44.11!REL;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.44!NCOA4;;chr12:48298765..48298783,-!p2@VDR!1.55!70.33!VDR;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!163.67!HIVEP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.54!56.90!HIVEP1;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.88!IKZF1;;chr4:83822294..83822306,+!p8@THAP9!1.54!33.88!THAP9;;chr6:15246200..15246214,+!p2@JARID2!1.53!87.59!JARID2;;chr2:70314240..70314256,+!p4@PCBP1!1.53!65.85!PCBP1;;chr6:126240442..126240459,+!p4@NCOA7!1.53!41.56!NCOA7;;chr14:35872414..35872425,-!p7@NFKBIA!1.53!36.44!NFKBIA;;chr14:35872542..35872553,-!p10@NFKBIA!1.53!32.61!NFKBIA;;chr11:615942..615957,-!p1@IRF7!1.52!288.34!IRF7;;chrX:129244454..129244488,-!p1@ELF4!1.52!223.13!ELF4;;chr21:30673091..30673135,+!p7@BACH1!1.52!31.97!BACH1;;chr2:73520667..73520683,-!p1@EGR4!1.52!31.97!EGR4;;chr4:103423079..103423112,+!p4@NFKB1!1.52!31.97!NFKB1;;chr21:40177845..40177863,+!p1@ETS2!1.51!1770.32!ETS2;;chr10:35416142..35416169,+!p3@CREM!1.51!79.92!CREM;;chr6:126240380..126240430,+!p2@NCOA7!1.51!78.64!NCOA7;;chr3:101575889..101575903,+!p3@NFKBIZ!1.51!31.33!NFKBIZ;;chr2:97202480..97202499,+!p1@ARID5A!1.50!294.73!ARID5A;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!287.06!NFKBIE;;chr2:70167296..70167306,+!p3@MXD1!1.50!46.03!MXD1;;chr6:144385698..144385742,-!p2@PLAGL1!1.50!37.08!PLAGL1;;chr6:391743..391759,+!p1@IRF4!1.50!30.69!IRF4;;chr12:11802753..11802834,+!p2@ETV6!1.48!137.46!ETV6;;chr11:47399920..47399931,-!p7@SPI1!1.48!29.41!SPI1;;chr2:68615063..68615089,+!p4@PLEK!1.48!29.41!PLEK;;chr7:106810484..106810494,+!p4@HBP1!1.48!29.41!HBP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.47!358.67!ZBTB43;;chr6:126240463..126240489,+!p6@NCOA7!1.47!31.97!NCOA7;;chr2:145271342..145271377,-!p5@ZEB2!1.47!28.77!ZEB2;;chr10:3827371..3827386,-!p2@KLF6!1.46!225.05!KLF6;;chr5:137804484..137804498,+!p2@EGR1!1.45!106.77!EGR1;;chr8:81397820..81397836,+!p2@ZBTB10!1.45!33.88!ZBTB10;;chr21:30671235..30671253,+!p1@BACH1!1.44!324.14!BACH1;;chr6:12011943..12012015,+!p2@HIVEP1!1.44!82.47!HIVEP1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.85!ZBED1;;chrX:153305962..153305995,-!p5@MECP2!1.43!26.21!MECP2;;chr4:83822246..83822277,+!p5@THAP9!1.43!26.21!THAP9;;chr2:238600998..238601013,+!p5@LRRFIP1!1.42!25.57!LRRFIP1;;chr13:41593425..41593480,-!p1@ELF1!1.41!151.52!ELF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.41!52.43!ZC3H4;;chr18:3449720..3449749,+!p2@TGIF1!1.41!51.15!TGIF1;;chr5:137801160..137801176,+!p1@EGR1!1.40!2265.81!EGR1;;chr9:110252035..110252057,-!p1@KLF4!1.40!366.98!KLF4;;chr2:238600933..238600985,+!p3@LRRFIP1!1.40!125.95!LRRFIP1;;chr2:28615716..28615733,+!p1@FOSL2!1.39!1057.46!FOSL2;;chr12:96588219..96588263,+!p2@ELK3!1.39!164.95!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.39!76.72!BCL3;;chr3:12329397..12329433,+!p2@PPARG!1.39!52.43!PPARG;;chr1:38325227..38325246,-!p2@MTF1!1.39!31.97!MTF1;;chr17:38497662..38497713,+!p4@RARA!1.39!27.49!RARA;;chr3:170075436..170075520,+!p1@SKIL!1.38!483.34!SKIL;;chr2:61108771..61108789,+!p4@REL!1.38!34.52!REL;;chr2:70165961..70165981,+!p8@MXD1!1.38!23.02!MXD1;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.38!SPI1;;chr12:96588368..96588394,+!p3@ELK3!1.36!58.18!ELK3;;chr4:83821967..83821998,+!p3@THAP9!1.36!26.85!THAP9;;chr2:231090471..231090504,+!p2@SP140!1.36!21.74!SP140;;chr10:35484804..35484902,+!p2@CREM!1.35!79.92!CREM;;chr13:41635029..41635044,-!p4@ELF1!1.35!44.75!ELF1;;chr4:103422811..103422822,+!p11@NFKB1!1.34!21.10!NFKB1;;chr1:161736038..161736056,+!p4@ATF6!1.33!46.67!ATF6;;chr18:3448455..3448480,+!p5@TGIF1!1.33!37.08!TGIF1;;chr17:38497715..38497734,+!p8@RARA!1.32!19.82!RARA;;chr4:83822343..83822355,+!p9@THAP9!1.32!19.82!THAP9;;chr21:34398234..34398250,+!p1@OLIG2!1.32!19.82!OLIG2;;chr19:19496539..19496576,+!p8@GATAD2A!1.31!33.88!GATAD2A;;chr10:3827389..3827408,-!p1@KLF6!1.30!1411.66!KLF6;;chr1:157108130..157108173,-!p1@ETV3!1.30!132.34!ETV3;;chr2:192015677..192015691,-!p3@STAT4!1.30!19.18!STAT4;;chr12:96588279..96588299,+!p4@ELK3!1.29!86.31!ELK3;;chr2:68615031..68615055,+!p3@PLEK!1.29!18.54!PLEK;;chr2:70166156..70166179,+!p4@MXD1!1.29!18.54!MXD1;;chr2:208394817..208394834,+!p3@CREB1!1.28!72.25!CREB1;;chr21:40177892..40177903,+!p2@ETS2!1.28!70.97!ETS2;;chr2:157199008..157199023,-!p3@NR4A2!1.28!37.08!NR4A2;;chr8:80679993..80680011,-!p1@HEY1!1.28!26.21!HEY1;;chrX:153305741..153305753,-!p4@MECP2!1.28!17.90!MECP2;;chr1:935467..935484,-!p1@HES4!1.27!77.36!HES4;;chr21:36421535..36421610,-!p2@RUNX1!1.27!61.38!RUNX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.27!31.33!ZNF804A;;chr21:36260295..36260310,-!p3@RUNX1!1.27!28.13!RUNX1;;chr2:28618532..28618610,+!p4@FOSL2!1.26!29.41!FOSL2;;chr5:142782823..142782854,-!p3@NR3C1!1.26!24.29!NR3C1;;chr4:103446567..103446592,+!p15@NFKB1!1.26!17.26!NFKB1;;chr13:41593392..41593403,-!p7@ELF1!1.26!17.26!ELF1;;chrX:24167086..24167111,+!p4@ZFX!1.26!17.26!ZFX;;chr5:88178983..88179012,-!p1@MEF2C!1.25!128.51!MEF2C;;chr11:65430554..65430579,-!p3@RELA!1.25!42.84!RELA;;chr2:70166258..70166288,+!p5@MXD1!1.25!16.62!MXD1;;chr7:115670792..115670797,-!p2@TFEC!1.25!16.62!TFEC;;chr20:48807351..48807384,+!p1@CEBPB!1.24!1618.80!CEBPB;;chr7:17338266..17338282,+!p1@AHR!1.24!174.54!AHR;;chr19:45250948..45250998,+!p3@BCL3!1.24!40.92!BCL3;;chr10:104155455..104155479,+!p1@NFKB2!1.23!230.80!NFKB2;;chr18:3449618..3449634,+!p13@TGIF1!1.23!19.82!TGIF1;;chr12:72056897..72056908,+!p12@THAP2!1.23!15.98!THAP2;;chr2:157186630..157186686,-!p6@NR4A2!1.23!15.98!NR4A2;;chr2:70142189..70142223,+!p2@MXD1!1.22!109.33!MXD1;;chr3:39195139..39195150,-!p3@CSRNP1!1.22!19.82!CSRNP1;;chr3:12330560..12330579,+!p1@PPARG!1.22!17.90!PPARG;;chr7:44924939..44924993,-!p2@PURB!1.21!29.41!PURB;;chr18:3449586..3449617,+!p8@TGIF1!1.21!24.29!TGIF1;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.34!BCL3;;chr21:30672433..30672464,+!p6@BACH1!1.21!15.34!BACH1;;chr2:70166988..70167021,+!p7@MXD1!1.21!15.34!MXD1;;chr22:38598086..38598105,+!p1@MAFF!1.20!156.00!MAFF;;chr8:81397846..81397860,+!p3@Z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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11884-125D3
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor3.CNhs13492.11884-125D3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor3.CNhs13492.11884-125D3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor3.CNhs13492.11884-125D3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor3.CNhs13492.11884-125D3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor3.CNhs13492.11884-125D3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11884-125D3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011106
+|is_a=EFO:0002091;;FF:0011106
+|is_obsolete=
+|library_id=CNhs13492
+|library_id_phase_based=2:CNhs13492
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11884
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11884
 |name=CD14+ monocytes - treated with Group A streptococci, donor3
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13492,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 57: / Line 79: @@
 |rna_weight_ug=2.443095
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 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=FOS_FOS{B,L1}_JUN{B,D}:6.24934751512;FOSL2:6.15705266436;BACH2:6.05983127873;HLF:5.99543413281;NFE2:5.78405052756;CEBPA,B_DDIT3:5.51442874576;NFIL3:5.13536974651;NFE2L2:4.8417549161;IRF7:4.82072096856;NFKB1_REL_RELA:4.79098171068;PAX2:4.76909456672;FOXP3:4.27845636394;IRF1,2:4.11385815645;HSF1,2:4.01238738292;PAX8:3.92631090268;SPIB:3.83721143315;ATF5_CREB3:3.72107253875;NFATC1..3:3.58193593715;SPI1:3.4596196228;JUN:3.44454371383;ATF4:3.43495957502;SREBF1,2:3.37726652879;CREB1:3.35163220406;NANOG{mouse}:3.22261525472;ETS1,2:3.1093160474;NFE2L1:3.0985299146;ATF6:2.96774523318;DMAP1_NCOR{1,2}_SMARC:2.964726358;NR1H4:2.94125700433;PAX3,7:2.92568103862;RUNX1..3:2.87080464785;MAFB:2.84194499635;ATF2:2.81395195757;STAT5{A,B}:2.76340876907;PPARG:2.33059897979;FOXN1:2.21117770652;STAT2,4,6:2.09473505993;XBP1:2.06785197509;HOX{A5,B5}:2.00444153137;IKZF1:1.89695516054;CDX1,2,4:1.54468044155;TGIF1:1.45061106176;PDX1:1.36054391498;RXRA_VDR{dimer}:1.35991956827;HMGA1,2:1.3161693905;EP300:1.12397767228;PAX1,9:1.05962270296;FOXO1,3,4:1.02759739213;ELF1,2,4:0.924058279226;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.867870789932;PRDM1:0.746163885383;ALX4:0.692842119911;SRF:0.540675779227;TBP:0.525923566063;HIF1A:0.390286742055;HMX1:0.259456995519;GLI1..3:0.209307614507;NR3C1:0.193652652621;POU2F1..3:0.179897839074;BPTF:0.165234126733;SMAD1..7,9:0.074688828855;RORA:0.0599443674233;EN1,2:0.0329919037435;ZBTB16:-0.0163155229894;POU3F1..4:-0.0464106167719;AHR_ARNT_ARNT2:-0.0714460560205;MEF2{A,B,C,D}:-0.109238675015;IKZF2:-0.113982273476;RBPJ:-0.133390500973;OCT4_SOX2{dimer}:-0.149402497476;DBP:-0.158212840541;HBP1_HMGB_SSRP1_UBTF:-0.175492254424;POU5F1:-0.225332939069;GATA4:-0.273317230383;EGR1..3:-0.278030207176;FOXL1:-0.354069965236;RFX2..5_RFXANK_RFXAP:-0.376839900397;NANOG:-0.376864353033;TLX2:-0.435326956872;SOX2:-0.47633822905;HOXA9_MEIS1:-0.478147260298;FOXD3:-0.546706812685;VSX1,2:-0.579026381275;FOX{D1,D2}:-0.590655898708;NR6A1:-0.625961718763;NFIX:-0.636106874857;FOXM1:-0.64059133967;SPZ1:-0.736170778132;PITX1..3:-0.755490385363;ESR1:-0.798228926716;PAX4:-0.810481068647;TFCP2:-0.836487923493;MYB:-0.951131236791;MZF1:-1.11957213483;NKX2-1,4:-1.16775516836;HES1:-1.18289602378;NKX3-1:-1.18538758811;TEF:-1.21065925859;STAT1,3:-1.21665202625;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.31309567632;ZNF384:-1.33446471269;HOX{A4,D4}:-1.37980289689;TFAP4:-1.41161517993;T:-1.41629873532;PAX6:-1.41891286795;ESRRA:-1.44679627217;MED-1{core}:-1.45615060004;RFX1:-1.46849357638;ZNF238:-1.52465605935;NHLH1,2:-1.57201538281;HNF4A_NR2F1,2:-1.57251577218;HNF1A:-1.57538747559;FOXP1:-1.5992693344;PRRX1,2:-1.6163485084;REST:-1.61967396522;NKX2-3_NKX2-5:-1.62559616524;MYFfamily:-1.63861233722;MTE{core}:-1.64571792615;TBX4,5:-1.6495701606;ALX1:-1.68498718278;SOX5:-1.73675805565;RXR{A,B,G}:-1.75483356839;TEAD1:-1.77448440051;E2F1..5:-1.81450232607;TFDP1:-1.84150962605;GTF2A1,2:-1.84346289135;CRX:-1.86559654998;FOX{F1,F2,J1}:-1.87560062325;ZFP161:-1.89235378832;TAL1_TCF{3,4,12}:-1.93625350016;GZF1:-1.93757423188;BREu{core}:-1.96313771845;ONECUT1,2:-1.97613361703;TP53:-1.98863137846;PATZ1:-2.02469971425;ADNP_IRX_SIX_ZHX:-2.04204937701;CDC5L:-2.04644358836;GTF2I:-2.06398565027;GCM1,2:-2.08213554631;TFAP2B:-2.0885892717;GATA6:-2.10422351757;ZBTB6:-2.12521732915;SP1:-2.12794128448;ARID5B:-2.1335230152;CUX2:-2.13910464096;NKX2-2,8:-2.14234139171;ZIC1..3:-2.1504244597;POU6F1:-2.17103010042;MYBL2:-2.24400775259;TLX1..3_NFIC{dimer}:-2.27083647771;SOX{8,9,10}:-2.28300126747;FOXA2:-2.34429620279;MTF1:-2.39025724498;MAZ:-2.41682400718;RREB1:-2.42092118432;ZEB1:-2.4965106296;FOX{I1,J2}:-2.50702676841;ELK1,4_GABP{A,B1}:-2.61974308128;NKX6-1,2:-2.62061362765;TFAP2{A,C}:-2.62435992899;HIC1:-2.6988729395;SNAI1..3:-2.71021198072;GFI1B:-2.74164854137;HOX{A6,A7,B6,B7}:-2.77280701523;ZNF148:-2.78909917303;NKX3-2:-2.86533623546;bHLH_family:-2.87078335258;KLF4:-2.87886876825;POU1F1:-2.89174455619;NFY{A,B,C}:-2.8969025451;UFEwm:-2.90200677131;XCPE1{core}:-2.91392184279;NR5A1,2:-3.00844812991;FOXQ1:-3.00960152222;EBF1:-3.01000969326;AIRE:-3.02272513022;SOX17:-3.03784927098;ZNF423:-3.24110094459;PBX1:-3.33297926336;EVI1:-3.45620842687;LMO2:-3.49655753598;GFI1:-3.62709154141;NRF1:-3.67177763668;MYOD1:-3.72641758606;AR:-3.80907578027;PAX5:-3.81310068832;HAND1,2:-3.87745980312;LHX3,4:-3.91409226733;LEF1_TCF7_TCF7L1,2:-4.08701715448;YY1:-4.28504205718;TOPORS:-4.47138504756;ZNF143:-4.54896104752
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11884-125D3;search_select_hide=table117:FF:11884-125D3
 }}

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FF:11884-125D3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0