FF:11883-125D2: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - mock treated, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13491
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004822

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13491		CAGE		DRX008134		DRR009006

Accession ID Hg19

Library id		BAM		CTSS
CNhs13491		DRZ000431		DRZ001816

Accession ID Hg38

Library id		BAM		CTSS
CNhs13491		DRZ011781		DRZ013166

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.0943
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.293
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0943
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.172
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.678
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0943
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.202
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.172
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.393
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.396
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0997
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.666
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.237
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.18
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0943
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.074
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.237
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.989
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.172
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.915
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.592
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.308
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.815
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.324
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0943
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.426
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.345
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.643
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.237
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.684
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.172
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.93
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.295
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0943
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.72
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0408
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.0943
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.473
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.0943
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.785
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.0943
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.169
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0943
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.172
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.39
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13491

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.82801e-8
MA0003.1	MA0003.1	0.293
MA0004.1	MA0004.1	0.361
MA0006.1	MA0006.1	0.741
MA0007.1	MA0007.1	0.876
MA0009.1	MA0009.1	0.406
MA0014.1	MA0014.1	0.857
MA0017.1	MA0017.1	0.0316
MA0018.2	MA0018.2	0.315
MA0019.1	MA0019.1	0.613
MA0024.1	MA0024.1	4.76957e-4
MA0025.1	MA0025.1	6.52506e-4
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	0.529
MA0029.1	MA0029.1	0.59
MA0030.1	MA0030.1	0.707
MA0031.1	MA0031.1	0.495
MA0035.2	MA0035.2	0.574
MA0038.1	MA0038.1	0.02
MA0039.2	MA0039.2	0.669
MA0040.1	MA0040.1	0.155
MA0041.1	MA0041.1	0.938
MA0042.1	MA0042.1	0.441
MA0043.1	MA0043.1	6.60022e-4
MA0046.1	MA0046.1	0.0488
MA0047.2	MA0047.2	0.258
MA0048.1	MA0048.1	0.999
MA0050.1	MA0050.1	2.66436e-6
MA0051.1	MA0051.1	0.0189
MA0052.1	MA0052.1	0.347
MA0055.1	MA0055.1	0.476
MA0057.1	MA0057.1	0.705
MA0058.1	MA0058.1	0.171
MA0059.1	MA0059.1	0.548
MA0060.1	MA0060.1	1.59911e-10
MA0061.1	MA0061.1	5.23069e-5
MA0062.2	MA0062.2	0.00953
MA0065.2	MA0065.2	0.0379
MA0066.1	MA0066.1	0.154
MA0067.1	MA0067.1	7.43953e-4
MA0068.1	MA0068.1	0.879
MA0069.1	MA0069.1	0.928
MA0070.1	MA0070.1	0.0477
MA0071.1	MA0071.1	0.253
MA0072.1	MA0072.1	0.908
MA0073.1	MA0073.1	0.251
MA0074.1	MA0074.1	0.212
MA0076.1	MA0076.1	0.669
MA0077.1	MA0077.1	0.118
MA0078.1	MA0078.1	0.435
MA0079.2	MA0079.2	0.959
MA0080.2	MA0080.2	1.02327e-16
MA0081.1	MA0081.1	1.59772e-4
MA0083.1	MA0083.1	0.99
MA0084.1	MA0084.1	0.808
MA0087.1	MA0087.1	0.474
MA0088.1	MA0088.1	0.666
MA0090.1	MA0090.1	0.0644
MA0091.1	MA0091.1	0.573
MA0092.1	MA0092.1	0.242
MA0093.1	MA0093.1	0.364
MA0099.2	MA0099.2	6.54659e-38
MA0100.1	MA0100.1	0.648
MA0101.1	MA0101.1	8.13684e-4
MA0102.2	MA0102.2	2.61523e-9
MA0103.1	MA0103.1	0.463
MA0104.2	MA0104.2	0.957
MA0105.1	MA0105.1	1.58618e-6
MA0106.1	MA0106.1	0.505
MA0107.1	MA0107.1	6.94001e-5
MA0108.2	MA0108.2	0.0186
MA0111.1	MA0111.1	0.346
MA0112.2	MA0112.2	1.08717e-4
MA0113.1	MA0113.1	0.914
MA0114.1	MA0114.1	0.237
MA0115.1	MA0115.1	0.815
MA0116.1	MA0116.1	4.02943e-4
MA0117.1	MA0117.1	0.284
MA0119.1	MA0119.1	0.467
MA0122.1	MA0122.1	0.734
MA0124.1	MA0124.1	0.572
MA0125.1	MA0125.1	0.307
MA0131.1	MA0131.1	0.425
MA0135.1	MA0135.1	0.243
MA0136.1	MA0136.1	9.71207e-20
MA0137.2	MA0137.2	0.492
MA0138.2	MA0138.2	0.669
MA0139.1	MA0139.1	0.635
MA0140.1	MA0140.1	0.444
MA0141.1	MA0141.1	0.0713
MA0142.1	MA0142.1	0.877
MA0143.1	MA0143.1	0.503
MA0144.1	MA0144.1	0.158
MA0145.1	MA0145.1	0.193
MA0146.1	MA0146.1	0.028
MA0147.1	MA0147.1	0.925
MA0148.1	MA0148.1	0.931
MA0149.1	MA0149.1	0.266
MA0150.1	MA0150.1	1.43776e-12
MA0152.1	MA0152.1	0.379
MA0153.1	MA0153.1	0.0093
MA0154.1	MA0154.1	0.00169
MA0155.1	MA0155.1	0.67
MA0156.1	MA0156.1	8.48451e-14
MA0157.1	MA0157.1	0.257
MA0159.1	MA0159.1	0.0301
MA0160.1	MA0160.1	0.0212
MA0162.1	MA0162.1	0.949
MA0163.1	MA0163.1	4.2026e-5
MA0164.1	MA0164.1	0.701
MA0258.1	MA0258.1	0.00233
MA0259.1	MA0259.1	0.436

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13491

Novel motif	Logo	P-value
1	1	0.156
10	10	0.0223
100	100	0.668
101	101	0.67
102	102	0.396
103	103	0.301
104	104	0.541
105	105	0.28
106	106	6.99327e-4
107	107	0.243
108	108	0.992
109	109	0.187
11	11	0.216
110	110	0.369
111	111	0.049
112	112	0.27
113	113	0.475
114	114	0.0191
115	115	0.214
116	116	0.875
117	117	0.0306
118	118	0.216
119	119	0.173
12	12	0.337
120	120	0.675
121	121	0.532
122	122	0.675
123	123	0.0411
124	124	0.673
125	125	0.816
126	126	0.159
127	127	0.228
128	128	0.0162
129	129	0.496
13	13	0.187
130	130	0.26
131	131	0.344
132	132	0.0696
133	133	0.79
134	134	0.62
135	135	0.253
136	136	0.972
137	137	0.00421
138	138	0.165
139	139	0.0475
14	14	0.414
140	140	0.19
141	141	0.333
142	142	0.729
143	143	0.0328
144	144	0.86
145	145	0.571
146	146	0.441
147	147	0.209
148	148	0.0262
149	149	0.742
15	15	0.157
150	150	0.482
151	151	0.273
152	152	0.0799
153	153	0.358
154	154	0.611
155	155	0.458
156	156	0.826
157	157	0.419
158	158	0.106
159	159	0.829
16	16	0.42
160	160	0.607
161	161	0.624
162	162	0.244
163	163	0.605
164	164	0.129
165	165	0.117
166	166	0.359
167	167	0.293
168	168	0.396
169	169	0.0106
17	17	0.205
18	18	0.25
19	19	0.267
2	2	0.896
20	20	0.441
21	21	0.349
22	22	0.154
23	23	0.0563
24	24	0.189
25	25	0.299
26	26	0.0526
27	27	0.715
28	28	0.44
29	29	0.397
3	3	0.0727
30	30	0.654
31	31	0.685
32	32	0.623
33	33	0.542
34	34	0.325
35	35	0.197
36	36	0.209
37	37	0.0565
38	38	0.311
39	39	0.811
4	4	0.618
40	40	0.18
41	41	0.0136
42	42	0.381
43	43	0.0437
44	44	0.914
45	45	0.661
46	46	0.172
47	47	0.537
48	48	0.466
49	49	0.109
5	5	0.216
50	50	0.955
51	51	0.342
52	52	0.29
53	53	0.225
54	54	0.321
55	55	0.398
56	56	0.628
57	57	0.933
58	58	0.104
59	59	0.108
6	6	0.596
60	60	0.0388
61	61	0.465
62	62	0.0357
63	63	0.493
64	64	0.525
65	65	0.211
66	66	0.348
67	67	0.461
68	68	0.878
69	69	0.838
7	7	0.227
70	70	0.0163
71	71	0.0346
72	72	0.241
73	73	0.0747
74	74	0.161
75	75	0.0558
76	76	0.28
77	77	0.413
78	78	0.0957
79	79	0.195
8	8	0.471
80	80	0.12
81	81	0.417
82	82	0.135
83	83	0.336
84	84	0.493
85	85	0.0127
86	86	0.0292
87	87	0.3
88	88	0.416
89	89	0.413
9	9	0.31
90	90	0.0705
91	91	0.343
92	92	0.188
93	93	0.161
94	94	0.036
95	95	0.376
96	96	0.433
97	97	0.926
98	98	0.167
99	99	0.114

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13491

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
+|DRA_sample_Accession=CAGE@SAMD00004822
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
+|accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816;DRZ011781;DRZ013166
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0011101
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.74!547.27!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.52!333.80!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.46!287.95!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.28!190.91!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.27!187.27!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.15!139.00!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.81!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.09!220.99!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.95!88.30!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.95!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.79!244.28!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.79!61.13!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.78!655.70!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.77!58.46!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!1.75!149.43!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.72!61.13!ATF5;;chr2:145277640..145277771,-!p1@ZEB2!1.65!557.94!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.51!OLIG1;;chr7:50344289..50344323,+!p1@IKZF1!1.59!37.84!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.53!79.81!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.52!104.80!BACH1;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!39.06!PLAGL1;;chr2:70142232..70142251,+!p1@MXD1!1.51!168.11!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.49!532.47!FOSB;;chr11:47400045..47400060,-!p6@SPI1!1.49!30.08!SPI1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.60!ZBED1;;chr19:13213662..13213686,-!p1@LYL1!1.47!41.72!LYL1;;chr12:48298765..48298783,-!p2@VDR!1.44!54.10!VDR;;chr7:128577972..128578047,+!p1@IRF5!1.42!39.54!IRF5;;chr10:51572339..51572376,+!p4@NCOA4!1.38!50.94!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.38!27.90!NFE2;;chr19:42636586..42636607,-!p1@POU2F2!1.36!59.68!POU2F2;;chr10:51572408..51572454,+!p3@NCOA4!1.34!118.87!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.32!103.34!VDR;;chr12:96588279..96588299,+!p4@ELK3!1.32!91.21!ELK3;;chr1:25256439..25256476,-!p3@RUNX3!1.32!20.13!RUNX3;;chr9:117150254..117150271,-!p1@AKNA!1.31!52.40!AKNA;;chr12:96588368..96588394,+!p3@ELK3!1.31!51.43!ELK3;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.56!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.31!19.41!OLIG2;;chr2:145275162..145275202,-!p2@ZEB2!1.30!109.16!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.30!101.16!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.30!18.92!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.51!ETV6;;chr16:31885093..31885165,+!p1@ZNF267!1.28!266.11!ZNF267;;chrX:129244454..129244488,-!p1@ELF4!1.28!127.84!ELF4;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.19!LRRFIP1;;chr20:48599506..48599526,+!p1@SNAI1!1.27!110.62!SNAI1;;chr12:96588219..96588263,+!p2@ELK3!1.26!122.26!ELK3;;chr21:36260295..36260310,-!p3@RUNX1!1.26!27.65!RUNX1;;chr17:38497662..38497713,+!p4@RARA!1.26!20.13!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.26!17.22!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.25!103.83!ELF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.24!158.89!NFKBIE;;chr5:88178983..88179012,-!p1@MEF2C!1.24!123.72!MEF2C;;chr12:124873852..124873881,-!p3@NCOR2!1.24!96.55!NCOR2;;chr10:31288370..31288393,-!p3@ZNF438!1.24!16.25!ZNF438;;chr4:106068026..106068084,+!p1@TET2!1.23!139.97!TET2;;chr14:35872453..35872485,-!p2@NFKBIA!1.23!38.81!NFKBIA;;chr21:30671235..30671253,+!p1@BACH1!1.21!188.49!BACH1;;chr6:15246200..15246214,+!p2@JARID2!1.21!41.97!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.21!32.26!TGIF1;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.28!BCL3;;chr19:19496539..19496576,+!p8@GATAD2A!1.20!25.71!GATAD2A;;chr21:36421535..36421610,-!p2@RUNX1!1.19!51.43!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.90!BCL3;;chr7:17338266..17338282,+!p1@AHR!1.14!137.30!AHR;;chr2:70314240..70314256,+!p4@PCBP1!1.14!26.20!PCBP1;;chr6:391743..391759,+!p1@IRF4!1.13!12.37!IRF4;;chr19:13213954..13214021,-!p4@LYL1!1.13!12.37!LYL1;;chrX:106960285..106960299,-!p1@TSC22D3!1.12!327.73!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.12!12.13!IKZF1;;chr21:30672433..30672464,+!p6@BACH1!1.11!11.89!BACH1;;chr9:110252035..110252057,-!p1@KLF4!1.09!181.21!KLF4;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.65!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.07!35.42!BCL3;;chr3:170075436..170075520,+!p1@SKIL!1.06!228.76!SKIL;;chr2:61108695..61108753,+!p1@REL!1.06!73.02!REL;;chr1:156470515..156470542,-!p2@MEF2D!1.06!55.07!MEF2D;;chr10:94449703..94449718,+!p1@HHEX!1.06!40.51!HHEX;;chr7:17338324..17338341,+!p3@AHR!1.06!35.66!AHR;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.87!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.82!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.84!RXRA;;chr3:12329397..12329433,+!p2@PPARG!1.05!23.53!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.04!272.42!ATF3;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.86!EGR2;;chr19:36391434..36391450,-!p1@NFKBID!1.04!19.89!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.04!13.10!THAP2;;chr1:25291620..25291635,-!p4@RUNX3!1.04!9.95!RUNX3;;chr20:48807351..48807384,+!p1@CEBPB!1.03!1002.36!CEBPB;;chr8:22550982..22550999,-!p1@EGR3!1.03!28.14!EGR3;;chr2:185463247..185463263,+!p1@ZNF804A!1.03!17.22!ZNF804A;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr2:97202480..97202499,+!p1@ARID5A!1.02!98.00!ARID5A;;chr15:90544532..90544563,+!p1@ZNF710!1.02!19.41!ZNF710;;chr12:72056749..72056767,+!p6@THAP2!1.02!10.43!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!67.44!ETV3;;chr17:38498402..38498445,+!p3@RARA!1.01!34.20!RARA;;chr9:129567282..129567353,+!p1@ZBTB43!0.99!118.14!ZBTB43;;chr7:28725740..28725778,+!p1@CREB5!0.99!79.32!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.99!30.08!RARA;;chr2:231280954..231280965,+!p2@SP100!0.99!16.50!SP100;;chr10:135044190..135044229,+!p3@UTF1!0.99!8.73!UTF1;;chr11:615942..615957,-!p1@IRF7!0.98!83.21!IRF7;;chr19:19496624..19496660,+!p3@GATAD2A!0.98!40.51!GATAD2A;;chr8:116681123..116681143,-!p4@TRPS1!0.98!16.98!TRPS1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.34!TGIF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!543.87!NFKBIA;;chr17:38474489..38474548,+!p1@RARA!0.97!269.51!RARA;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.44!NR4A1;;chr15:31619013..31619095,+!p1@KLF13!0.96!195.52!KLF13;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.83!NCOA2;;chr10:3827371..3827386,-!p2@KLF6!0.95!68.89!KLF6;;chr2:157189180..157189290,-!p1@NR4A2!0.95!42.69!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!0.95!30.81!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!0.95!13.83!FOSL2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.95!10.67!ZCCHC6;;chr5:131826457..131826514,-!p1@IRF1!0.94!316.09!IRF1;;chr6:15246261..15246312,+!p1@JARID2!0.94!194.31!JARID2;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.52!NFKB2;;chr8:116681150..116681164,-!p5@TRPS1!0.94!15.28!TRPS1;;chr18:3449618..3449634,+!p13@TGIF1!0.94!9.70!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.76!CREB3L2;;chr10:104155480..104155534,+!p2@NFKB2!0.93!50.46!NFKB2;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.13!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!0.92!11.89!IRF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.40!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!0.92!7.28!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.91!888.10!FOS;;chr9:88969339..88969422,-!p2@ZCCHC6!0.91!57.74!ZCCHC6;;chr14:74226747..74226779,-!p3@C14orf43!0.91!41.48!C14orf43;;chr5:142782823..142782854,-!p3@NR3C1!0.91!10.43!NR3C1;;chr2:208031943..208031978,-!p5@KLF7!0.91!9.70!KLF7;;chr17:40440481..40440550,+!p1@STAT5A!0.90!52.64!STAT5A;;chr2:68592394..68592405,+!p2@PLEK!0.90!7.03!PLEK;;chr19:45251943..45252006,+!p1@BCL3!0.89!189.22!BCL3;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.02!ZNF467;;chr1:156470494..156470505,-!p3@MEF2D!0.89!9.95!MEF2D;;chr12:11802690..11802704,+!p4@ETV6!0.89!9.95!ETV6;;chr3:39195037..39195069,-!p2@CSRNP1!0.88!43.42!CSRNP1;;chr18:3449586..3449617,+!p8@TGIF1!0.88!10.92!TGIF1;;chr12:72056800..72056834,+!p1@THAP2!0.88!8.98!THAP2;;chr2:61108808..61108821,+!p3@REL!0.88!8.49!REL;;chr13:41593392..41593403,-!p7@ELF1!0.88!6.55!ELF1;;chr15:90545434..90545449,+!p9@ZNF710!0.88!6.55!ZNF710;;chr8:116681194..116681214,-!p1@TRPS1!0.87!63.56!TRPS1;;chr2:208394817..208394834,+!p3@CREB1!0.87!26.93!CREB1;;chr9:3525727..3525828,-!p2@RFX3!0.87!17.22!RFX3;;chr6:34204973..34204990,+!p4@HMGA1!0.86!87.82!HMGA1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.86!19.41!ZBTB7A;;chr14:35872962..35873025,-!p3@NFKBIA!0.86!16.50!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!0.86!6.31!NFE2;;chr19:50432104..50432126,+!p6@ATF5!0.86!6.31!ATF5;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.08!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.85!78.84!FLI1;;chr18:3449527..3449582,+!p6@TGIF1!0.85!11.89!TGIF1;;chr1:114302066..114302080,-!p2@PHTF1!0.85!11.40!PHTF1;;chr12:11802932..11802949,+!p3@ETV6!0.85!10.92!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.85!6.06!SP140;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.16!IFI16;;chr10:94449675..94449694,+!p2@HHEX!0.84!16.74!HHEX;;chr13:41635029..41635044,-!p4@ELF1!0.84!13.10!ELF1;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.89!ZNF276;;chr2:28615716..28615733,+!p1@FOSL2!0.83!293.77!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.64!CEBPB;;chr4:185395590..185395627,-!p3@IRF2!0.83!7.28!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!0.83!7.28!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.82!TFEC;;chr17:38497715..38497734,+!p8@RARA!0.83!5.82!RARA;;chr1:25291648..25291665,-!p7@RUNX3!0.83!5.82!RUNX3;;chr12:54778444..54778451,-!p8@ZNF385A!0.83!5.82!ZNF385A;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!120.08!LRRFIP1;;chr7:17338239..17338262,+!p2@AHR!0.82!45.12!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.63!RFX2;;chrX:129244840..129244881,-!p2@ELF4!0.82!23.05!ELF4;;chr6:15246217..15246228,+!p3@JARID2!0.82!10.43!JARID2;;chr6:41703296..41703367,-!p1@TFEB!0.81!29.35!TFEB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.81!24.74!LRRFIP2;;chr14:75988771..75988826,+!p1@BATF!0.81!7.52!BATF;;chr19:45254529..45254561,+!p10@BCL3!0.81!7.52!BCL3;;chr10:104155659..104155676,+!p4@NFKB2!0.81!7.03!NFKB2;;chr2:145275228..145275241,-!p11@ZEB2!0.81!6.79!ZEB2;;chr21:36260980..36261011,-!p1@RUNX1!0.80!164.96!RUNX1;;chr9:117160738.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 34: / Line 42: @@
 |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11883-125D2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11883-125D2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011101
+|is_a=EFO:0002091;;FF:0011101
+|is_obsolete=
+|library_id=CNhs13491
+|library_id_phase_based=2:CNhs13491
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11883
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11883
 |name=CD14+ monocytes - mock treated, donor3
 |namespace=
@@ Line 41: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13491,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 56: / Line 79: @@
 |rna_weight_ug=2.884275
 |sample_age=21
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 68: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.35648600380514e-249!GO:0043227;membrane-bound organelle;2.42982169459937e-131!GO:0043231;intracellular membrane-bound organelle;5.62013833251903e-131!GO:0005737;cytoplasm;4.27273491468583e-128!GO:0043226;organelle;1.05104454038896e-123!GO:0043229;intracellular organelle;8.05890657204491e-123!GO:0044444;cytoplasmic part;9.67184918415596e-83!GO:0044422;organelle part;2.80526728624362e-73!GO:0044237;cellular metabolic process;1.04163350744728e-72!GO:0043170;macromolecule metabolic process;2.01166507989841e-72!GO:0044446;intracellular organelle part;8.89333234374572e-72!GO:0044238;primary metabolic process;9.71785155156081e-72!GO:0005515;protein binding;8.43085191811929e-67!GO:0032991;macromolecular complex;2.16614683447769e-61!GO:0005634;nucleus;1.44695199836463e-57!GO:0003723;RNA binding;6.05337980958477e-57!GO:0030529;ribonucleoprotein complex;2.3152675860651e-53!GO:0044428;nuclear part;1.78467486298105e-51!GO:0019538;protein metabolic process;4.3911750473394e-49!GO:0044267;cellular protein metabolic process;1.43674424392607e-45!GO:0044260;cellular macromolecule metabolic process;1.5783030893757e-45!GO:0033036;macromolecule localization;8.47003003866514e-44!GO:0015031;protein transport;7.60238228612495e-43!GO:0045184;establishment of protein localization;1.1920052878922e-42!GO:0043233;organelle lumen;2.02059554848054e-42!GO:0031974;membrane-enclosed lumen;2.02059554848054e-42!GO:0043283;biopolymer metabolic process;2.08396820658428e-42!GO:0010467;gene expression;2.3513076618137e-41!GO:0006412;translation;2.94895993854244e-41!GO:0008104;protein localization;1.22659938501861e-40!GO:0006396;RNA processing;4.99351935250513e-35!GO:0016071;mRNA metabolic process;8.89116388007228e-35!GO:0031981;nuclear lumen;1.59844368301908e-33!GO:0005829;cytosol;1.9512074708097e-33!GO:0031090;organelle membrane;9.73549456191466e-33!GO:0009059;macromolecule biosynthetic process;1.80112036054773e-31!GO:0043234;protein complex;8.80453158262979e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.13441980190467e-30!GO:0008380;RNA splicing;3.07707200539939e-30!GO:0005739;mitochondrion;6.44645837416195e-30!GO:0046907;intracellular transport;9.724635441707e-30!GO:0006397;mRNA processing;1.70241802002782e-29!GO:0006886;intracellular protein transport;4.88603835897274e-29!GO:0016043;cellular component organization and biogenesis;9.55896980271744e-29!GO:0005840;ribosome;1.01917286446304e-27!GO:0006915;apoptosis;1.53795148509304e-27!GO:0012501;programmed cell death;1.7728235857671e-27!GO:0044249;cellular biosynthetic process;4.64468977863469e-27!GO:0009058;biosynthetic process;8.12409976936456e-27!GO:0008219;cell death;4.87711601101369e-26!GO:0016265;death;4.87711601101369e-26!GO:0003735;structural constituent of ribosome;2.7374185798463e-25!GO:0031967;organelle envelope;4.02892730552657e-25!GO:0031975;envelope;7.44004781652493e-25!GO:0005654;nucleoplasm;9.87726291716271e-24!GO:0033279;ribosomal subunit;2.85836715722007e-23!GO:0051649;establishment of cellular localization;5.36676117626938e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.26429321730444e-22!GO:0051641;cellular localization;3.11465153471506e-22!GO:0005681;spliceosome;1.12945195733432e-21!GO:0065003;macromolecular complex assembly;1.51562461579323e-21!GO:0044429;mitochondrial part;3.82790419441133e-21!GO:0044445;cytosolic part;1.52425407868214e-20!GO:0044451;nucleoplasm part;2.05316691861282e-20!GO:0000166;nucleotide binding;3.52764544853721e-20!GO:0016070;RNA metabolic process;3.94194170395021e-20!GO:0008134;transcription factor binding;4.73848061947145e-20!GO:0003676;nucleic acid binding;5.27210688174194e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.61975099632364e-19!GO:0043412;biopolymer modification;1.05977682132423e-18!GO:0006512;ubiquitin cycle;2.36388675960599e-18!GO:0022607;cellular component assembly;3.0862373786569e-18!GO:0016192;vesicle-mediated transport;4.40133888741178e-18!GO:0044265;cellular macromolecule catabolic process;5.1997138358005e-18!GO:0042981;regulation of apoptosis;2.12589419346971e-17!GO:0043067;regulation of programmed cell death;4.46961580328287e-17!GO:0006464;protein modification process;4.68602259092769e-17!GO:0006119;oxidative phosphorylation;2.25403089122726e-16!GO:0007243;protein kinase cascade;2.38308111005636e-16!GO:0005740;mitochondrial envelope;2.49837096149815e-16!GO:0022618;protein-RNA complex assembly;3.20126299071114e-16!GO:0048770;pigment granule;3.57123164936338e-16!GO:0042470;melanosome;3.57123164936338e-16!GO:0043687;post-translational protein modification;4.16829361623341e-16!GO:0050794;regulation of cellular process;5.55004737156752e-16!GO:0031966;mitochondrial membrane;1.16656088841559e-15!GO:0016604;nuclear body;1.75171305310203e-15!GO:0019866;organelle inner membrane;3.88648989851487e-15!GO:0043285;biopolymer catabolic process;4.14238892477674e-15!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.56683773205554e-15!GO:0019941;modification-dependent protein catabolic process;7.04193722852217e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.04193722852217e-15!GO:0006605;protein targeting;7.11154957923095e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.93960413382626e-15!GO:0006511;ubiquitin-dependent protein catabolic process;8.79668729505536e-15!GO:0044257;cellular protein catabolic process;8.79668729505536e-15!GO:0006996;organelle organization and biogenesis;9.82698196840809e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.30812983549227e-14!GO:0017111;nucleoside-triphosphatase activity;1.36333571115969e-14!GO:0016462;pyrophosphatase activity;1.36333571115969e-14!GO:0032553;ribonucleotide binding;1.63874771435133e-14!GO:0032555;purine ribonucleotide binding;1.63874771435133e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79547452877753e-14!GO:0009057;macromolecule catabolic process;3.41627385750728e-14!GO:0048523;negative regulation of cellular process;3.86406897347104e-14!GO:0005773;vacuole;4.57684585209999e-14!GO:0016874;ligase activity;7.02982855860162e-14!GO:0017076;purine nucleotide binding;7.25548741041018e-14!GO:0006913;nucleocytoplasmic transport;9.29084205284034e-14!GO:0007242;intracellular signaling cascade;9.49566035285929e-14!GO:0044248;cellular catabolic process;1.42788932859937e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.69522920694068e-13!GO:0051169;nuclear transport;1.79335915851489e-13!GO:0016607;nuclear speck;1.87633324009512e-13!GO:0005794;Golgi apparatus;2.81518896490376e-13!GO:0008135;translation factor activity, nucleic acid binding;6.6819132962451e-13!GO:0003712;transcription cofactor activity;7.97519287870566e-13!GO:0000323;lytic vacuole;8.45215442234933e-13!GO:0005764;lysosome;8.45215442234933e-13!GO:0015934;large ribosomal subunit;1.18165638890461e-12!GO:0005743;mitochondrial inner membrane;1.34323847332601e-12!GO:0048519;negative regulation of biological process;2.08120552109883e-12!GO:0050789;regulation of biological process;2.39936792407562e-12!GO:0006793;phosphorus metabolic process;3.27908019761678e-12!GO:0006796;phosphate metabolic process;3.27908019761678e-12!GO:0006457;protein folding;3.93427629240637e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.30610434822259e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.01059067170983e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.03172497255171e-12!GO:0044455;mitochondrial membrane part;1.07273386344329e-11!GO:0012505;endomembrane system;1.0732601548908e-11!GO:0003743;translation initiation factor activity;1.44398807865707e-11!GO:0030163;protein catabolic process;1.49011985512667e-11!GO:0015935;small ribosomal subunit;1.89386536682879e-11!GO:0043069;negative regulation of programmed cell death;2.71625010928723e-11!GO:0043066;negative regulation of apoptosis;3.25448606352218e-11!GO:0051246;regulation of protein metabolic process;3.28979646355662e-11!GO:0006413;translational initiation;4.01682127066684e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.83520995510801e-11!GO:0006259;DNA metabolic process;6.15754189758895e-11!GO:0005768;endosome;6.22734389618126e-11!GO:0006446;regulation of translational initiation;8.75225200319284e-11!GO:0016310;phosphorylation;9.35841668493916e-11!GO:0005524;ATP binding;1.11794341930462e-10!GO:0032559;adenyl ribonucleotide binding;1.24429986498512e-10!GO:0065009;regulation of a molecular function;1.3925917704511e-10!GO:0006366;transcription from RNA polymerase II promoter;1.93553858433233e-10!GO:0048193;Golgi vesicle transport;2.78666677856055e-10!GO:0005730;nucleolus;2.78666677856055e-10!GO:0051082;unfolded protein binding;3.96539470502532e-10!GO:0019222;regulation of metabolic process;4.04140418867684e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.52293999101589e-10!GO:0000375;RNA splicing, via transesterification reactions;4.52293999101589e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.52293999101589e-10!GO:0065007;biological regulation;4.54460094038788e-10!GO:0030554;adenyl nucleotide binding;5.4178669551037e-10!GO:0008639;small protein conjugating enzyme activity;8.11604032358396e-10!GO:0017038;protein import;1.84054933436522e-09!GO:0004842;ubiquitin-protein ligase activity;1.94268104440171e-09!GO:0005746;mitochondrial respiratory chain;1.95413317879966e-09!GO:0019787;small conjugating protein ligase activity;2.36243349062594e-09!GO:0051186;cofactor metabolic process;2.6078122226184e-09!GO:0016787;hydrolase activity;2.67852753186937e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.80458179284958e-09!GO:0006916;anti-apoptosis;3.37839595152926e-09!GO:0006950;response to stress;5.21508768596761e-09!GO:0019829;cation-transporting ATPase activity;6.21077938823818e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.39917923219999e-09!GO:0050136;NADH dehydrogenase (quinone) activity;7.06431676569389e-09!GO:0003954;NADH dehydrogenase activity;7.06431676569389e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.06431676569389e-09!GO:0031324;negative regulation of cellular metabolic process;7.67288918075576e-09!GO:0005635;nuclear envelope;7.9816087640766e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.63700013579711e-09!GO:0009967;positive regulation of signal transduction;1.09127011659546e-08!GO:0051170;nuclear import;1.352206910262e-08!GO:0044453;nuclear membrane part;1.45557728473288e-08!GO:0043228;non-membrane-bound organelle;1.51783051743541e-08!GO:0043232;intracellular non-membrane-bound organelle;1.51783051743541e-08!GO:0008565;protein transporter activity;1.86624265262587e-08!GO:0005770;late endosome;2.24869196746721e-08!GO:0015986;ATP synthesis coupled proton transport;2.38747710683182e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.38747710683182e-08!GO:0009056;catabolic process;2.42270239741583e-08!GO:0003713;transcription coactivator activity;2.44101568082571e-08!GO:0006606;protein import into nucleus;2.55228710852689e-08!GO:0008047;enzyme activator activity;2.89557381500445e-08!GO:0005783;endoplasmic reticulum;3.6319198397558e-08!GO:0006417;regulation of translation;3.94757147450817e-08!GO:0006732;coenzyme metabolic process;4.16136710232184e-08!GO:0042623;ATPase activity, coupled;4.37601819289468e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.46245075483283e-08!GO:0009150;purine ribonucleotide metabolic process;4.72809330912777e-08!GO:0016887;ATPase activity;5.034752993554e-08!GO:0016564;transcription repressor activity;6.04089198499938e-08!GO:0016881;acid-amino acid ligase activity;6.06635806936671e-08!GO:0031323;regulation of cellular metabolic process;6.58813975869316e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.44162450666052e-08!GO:0048522;positive regulation of cellular process;7.45312246973892e-08!GO:0031965;nuclear membrane;7.76221339051236e-08!GO:0006163;purine nucleotide metabolic process;8.32178453930808e-08!GO:0006164;purine nucleotide biosynthetic process;8.90784903517597e-08!GO:0016481;negative regulation of transcription;1.02392256992927e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.05188617084332e-07!GO:0007264;small GTPase mediated signal transduction;1.15185592969262e-07!GO:0009259;ribonucleotide metabolic process;1.29791343464103e-07!GO:0042775;organelle ATP synthesis coupled electron transport;1.35053098749223e-07!GO:0042773;ATP synthesis coupled electron transport;1.35053098749223e-07!GO:0016568;chromatin modification;1.41442408594794e-07!GO:0019899;enzyme binding;1.42631270972998e-07!GO:0005774;vacuolar membrane;1.7086426042025e-07!GO:0009615;response to virus;1.71004755864883e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.82049673358161e-07!GO:0009892;negative regulation of metabolic process;1.95897839416078e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.07229222312504e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.16955697041682e-07!GO:0045271;respiratory chain complex I;2.16955697041682e-07!GO:0005747;mitochondrial respiratory chain complex I;2.16955697041682e-07!GO:0050790;regulation of catalytic activity;2.18311520792908e-07!GO:0006754;ATP biosynthetic process;2.20847356463698e-07!GO:0006753;nucleoside phosphate metabolic process;2.20847356463698e-07!GO:0050657;nucleic acid transport;2.22459946432862e-07!GO:0051236;establishment of RNA localization;2.22459946432862e-07!GO:0050658;RNA transport;2.22459946432862e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.28107828585521e-07!GO:0009260;ribonucleotide biosynthetic process;2.31541399359039e-07!GO:0048518;positive regulation of biological process;2.48758458806287e-07!GO:0002376;immune system process;2.48758458806287e-07!GO:0006403;RNA localization;2.94878105918153e-07!GO:0009966;regulation of signal transduction;2.96615948507333e-07!GO:0043065;positive regulation of apoptosis;3.43422131444542e-07!GO:0006461;protein complex assembly;3.57319722843381e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.33617142423669e-07!GO:0005643;nuclear pore;4.34301816554704e-07!GO:0043068;positive regulation of programmed cell death;5.22607807973675e-07!GO:0005793;ER-Golgi intermediate compartment;5.30370861148704e-07!GO:0044440;endosomal part;5.62036922503632e-07!GO:0010008;endosome membrane;5.62036922503632e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.15748513639904e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.15748513639904e-07!GO:0044437;vacuolar part;8.18538313338745e-07!GO:0016563;transcription activator activity;8.34438165683667e-07!GO:0045786;negative regulation of progression through cell cycle;9.32197110901586e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.95471760769365e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.95471760769365e-07!GO:0005765;lysosomal membrane;1.06136326224357e-06!GO:0046034;ATP metabolic process;1.06843691372857e-06!GO:0031326;regulation of cellular biosynthetic process;1.07665163065446e-06!GO:0009889;regulation of biosynthetic process;1.07665163065446e-06!GO:0051726;regulation of cell cycle;1.08188519342479e-06!GO:0031980;mitochondrial lumen;1.09203348745105e-06!GO:0005759;mitochondrial matrix;1.09203348745105e-06!GO:0007049;cell cycle;1.11510914308253e-06!GO:0032446;protein modification by small protein conjugation;1.11845513168566e-06!GO:0003924;GTPase activity;1.2327639828391e-06!GO:0030695;GTPase regulator activity;1.43296314940343e-06!GO:0010468;regulation of gene expression;1.44727405773803e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.47109310382619e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.53932876284482e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.53932876284482e-06!GO:0000074;regulation of progression through cell cycle;1.53994231184251e-06!GO:0008026;ATP-dependent helicase activity;2.08259994963714e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.0937289191652e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.26320624804846e-06!GO:0044432;endoplasmic reticulum part;2.27558800942863e-06!GO:0016567;protein ubiquitination;2.38648232993343e-06!GO:0005525;GTP binding;2.6401306263924e-06!GO:0051028;mRNA transport;3.10994844599288e-06!GO:0005096;GTPase activator activity;3.10994844599288e-06!GO:0009607;response to biotic stimulus;3.32136941256564e-06!GO:0006917;induction of apoptosis;3.47990978332144e-06!GO:0048468;cell development;3.84384441082634e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.87930181526375e-06!GO:0051188;cofactor biosynthetic process;3.88685749806738e-06!GO:0006323;DNA packaging;4.09417117060833e-06!GO:0004386;helicase activity;4.20746276701656e-06!GO:0006974;response to DNA damage stimulus;4.22230834892759e-06!GO:0046930;pore complex;4.76640048142326e-06!GO:0009141;nucleoside triphosphate metabolic process;5.36595801808895e-06!GO:0012502;induction of programmed cell death;5.40214921069067e-06!GO:0016044;membrane organization and biogenesis;5.55610657085618e-06!GO:0009055;electron carrier activity;5.55610657085618e-06!GO:0031252;leading edge;5.5678693604223e-06!GO:0009108;coenzyme biosynthetic process;6.36835224125665e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.44196498542179e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.51381056654698e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.7495622814543e-06!GO:0048475;coated membrane;6.93664994356983e-06!GO:0030117;membrane coat;6.93664994356983e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.31948240841745e-06!GO:0005769;early endosome;8.42312037011345e-06!GO:0006752;group transfer coenzyme metabolic process;8.42312037011345e-06!GO:0003714;transcription corepressor activity;9.74914523452612e-06!GO:0006350;transcription;1.27198211383864e-05!GO:0016197;endosome transport;1.31472678504976e-05!GO:0006401;RNA catabolic process;1.34198249801265e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.3829620098423e-05!GO:0031982;vesicle;1.69951556959971e-05!GO:0065002;intracellular protein transport across a membrane;1.92851004551024e-05!GO:0043566;structure-specific DNA binding;2.1075964492798e-05!GO:0030120;vesicle coat;2.28811037075743e-05!GO:0030662;coated vesicle membrane;2.28811037075743e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.35115667861256e-05!GO:0003724;RNA helicase activity;2.4591609896131e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.59403854669041e-05!GO:0015399;primary active transmembrane transporter activity;2.59403854669041e-05!GO:0006955;immune response;2.6450564976285e-05!GO:0005789;endoplasmic reticulum membrane;2.68736294020381e-05!GO:0004298;threonine endopeptidase activity;3.29259717586451e-05!GO:0051168;nuclear export;3.95630468014391e-05!GO:0032561;guanyl ribonucleotide binding;4.14043296991139e-05!GO:0019001;guanyl nucleotide binding;4.14043296991139e-05!GO:0031902;late endosome membrane;4.15264616464492e-05!GO:0004674;protein serine/threonine kinase activity;6.04706768588808e-05!GO:0000151;ubiquitin ligase complex;6.10429889087737e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.44225337489057e-05!GO:0051336;regulation of hydrolase activity;6.54508228751781e-05!GO:0045259;proton-transporting ATP synthase complex;6.83326046865342e-05!GO:0006402;mRNA catabolic process;6.8408637790248e-05!GO:0000245;spliceosome assembly;7.03884614799648e-05!GO:0042254;ribosome biogenesis and assembly;7.1772204950282e-05!GO:0051276;chromosome organization and biogenesis;7.28872285821525e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.66494951981833e-05!GO:0051427;hormone receptor binding;8.08150201719419e-05!GO:0005083;small GTPase regulator activity;8.10106880689343e-05!GO:0003697;single-stranded DNA binding;8.43358598644619e-05!GO:0006281;DNA repair;8.52342013320398e-05!GO:0044431;Golgi apparatus part;9.24992606685256e-05!GO:0045892;negative regulation of transcription, DNA-dependent;9.39789500875354e-05!GO:0005057;receptor signaling protein activity;9.74352783070005e-05!GO:0008234;cysteine-type peptidase activity;0.000101876592777776!GO:0031410;cytoplasmic vesicle;0.000105889131860198!GO:0016740;transferase activity;0.000112939719915325!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000114265557439969!GO:0008632;apoptotic program;0.000114818790890469!GO:0006613;cotranslational protein targeting to membrane;0.000115864888206334!GO:0007265;Ras protein signal transduction;0.000117808997072661!GO:0046822;regulation of nucleocytoplasmic transport;0.000117886369027731!GO:0030532;small nuclear ribonucleoprotein complex;0.000137233953915723!GO:0035257;nuclear hormone receptor binding;0.000139367713158945!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00014162479216807!GO:0032940;secretion by cell;0.000148655179346533!GO:0006897;endocytosis;0.000154137694123112!GO:0010324;membrane invagination;0.000154137694123112!GO:0009060;aerobic respiration;0.000157196941550711!GO:0005761;mitochondrial ribosome;0.000170266505697967!GO:0000313;organellar ribosome;0.000170266505697967!GO:0030036;actin cytoskeleton organization and biogenesis;0.000171320807307504!GO:0005885;Arp2/3 protein complex;0.000200859921782676!GO:0043492;ATPase activity, coupled to movement of substances;0.000203648321374113!GO:0051789;response to protein stimulus;0.000222755191579118!GO:0006986;response to unfolded protein;0.000222755191579118!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000236518322075176!GO:0005798;Golgi-associated vesicle;0.000251360429353234!GO:0031988;membrane-bound vesicle;0.000267173915649829!GO:0006399;tRNA metabolic process;0.000267930593232496!GO:0006818;hydrogen transport;0.000282209729025883!GO:0008186;RNA-dependent ATPase activity;0.000289200068315046!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000312799902262456!GO:0004812;aminoacyl-tRNA ligase activity;0.000312799902262456!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000312799902262456!GO:0003729;mRNA binding;0.00033366980957761!GO:0007034;vacuolar transport;0.000338989989441351!GO:0005667;transcription factor complex;0.000351838051687012!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000353293116526673!GO:0022402;cell cycle process;0.000373553473455205!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000373909651070278!GO:0007040;lysosome organization and biogenesis;0.000397919654045938!GO:0001726;ruffle;0.000412582178049469!GO:0009893;positive regulation of metabolic process;0.000438128871451593!GO:0007005;mitochondrion organization and biogenesis;0.000455145050802651!GO:0015992;proton transport;0.000488667089356807!GO:0001816;cytokine production;0.00052279284661619!GO:0051223;regulation of protein transport;0.000612617275115608!GO:0045333;cellular respiration;0.000632401320456412!GO:0043038;amino acid activation;0.000632401320456412!GO:0006418;tRNA aminoacylation for protein translation;0.000632401320456412!GO:0043039;tRNA aminoacylation;0.000632401320456412!GO:0045449;regulation of transcription;0.000643256030075431!GO:0007050;cell cycle arrest;0.000654624455531876!GO:0008270;zinc ion binding;0.000656058067350907!GO:0009719;response to endogenous stimulus;0.00077657587094069!GO:0016023;cytoplasmic membrane-bound vesicle;0.000806765115348042!GO:0009117;nucleotide metabolic process;0.000832117373857963!GO:0046519;sphingoid metabolic process;0.000844571732022915!GO:0004004;ATP-dependent RNA helicase activity;0.000868083725255239!GO:0006351;transcription, DNA-dependent;0.000872324539421827!GO:0022890;inorganic cation transmembrane transporter activity;0.000872324539421827!GO:0006612;protein targeting to membrane;0.000878837494583107!GO:0032774;RNA biosynthetic process;0.000884536206878945!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000901758948597775!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000946663000801273!GO:0007041;lysosomal transport;0.000985837113006306!GO:0007033;vacuole organization and biogenesis;0.00101815811646775!GO:0044262;cellular carbohydrate metabolic process;0.00108404261877909!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00113805554347984!GO:0005637;nuclear inner membrane;0.00114396371818193!GO:0033157;regulation of intracellular protein transport;0.00119332211223025!GO:0042306;regulation of protein import into nucleus;0.00119332211223025!GO:0008654;phospholipid biosynthetic process;0.00131549904979294!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00132140829867907!GO:0043087;regulation of GTPase activity;0.00134016133011827!GO:0005099;Ras GTPase activator activity;0.00144588428785795!GO:0016301;kinase activity;0.0014523262633135!GO:0043623;cellular protein complex assembly;0.00146001726928676!GO:0006672;ceramide metabolic process;0.00152318327973724!GO:0016251;general RNA polymerase II transcription factor activity;0.00161722223853309!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00168907766851401!GO:0030149;sphingolipid catabolic process;0.0017929201447169!GO:0051090;regulation of transcription factor activity;0.00188529652606476!GO:0051338;regulation of transferase activity;0.00193925756769018!GO:0046983;protein dimerization activity;0.00195044881572984!GO:0016072;rRNA metabolic process;0.00203022675139326!GO:0016779;nucleotidyltransferase activity;0.00206813810991861!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00209551529351397!GO:0030029;actin filament-based process;0.00213410810099895!GO:0046914;transition metal ion binding;0.00218154753079294!GO:0031901;early endosome membrane;0.00233748751292276!GO:0000139;Golgi membrane;0.00234451438176491!GO:0060090;molecular adaptor activity;0.00234992071661166!GO:0019904;protein domain specific binding;0.00237468296486943!GO:0045941;positive regulation of transcription;0.00249457641789848!GO:0002757;immune response-activating signal transduction;0.00254272508912115!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00260663060846601!GO:0006352;transcription initiation;0.00267764661223273!GO:0006364;rRNA processing;0.00279273278244563!GO:0033116;ER-Golgi intermediate compartment membrane;0.00281139414819127!GO:0006919;caspase activation;0.00300008430680856!GO:0030099;myeloid cell differentiation;0.00302737591329742!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.003057488721207!GO:0005741;mitochondrial outer membrane;0.00316939131949955!GO:0045893;positive regulation of transcription, DNA-dependent;0.0031770422359816!GO:0048487;beta-tubulin binding;0.00318739572905665!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00321673107249976!GO:0031325;positive regulation of cellular metabolic process;0.00327999204939049!GO:0006468;protein amino acid phosphorylation;0.00328274885427777!GO:0042990;regulation of transcription factor import into nucleus;0.00336077690206969!GO:0042991;transcription factor import into nucleus;0.00336077690206969!GO:0051252;regulation of RNA metabolic process;0.00353491092955463!GO:0045045;secretory pathway;0.00365193697569511!GO:0043549;regulation of kinase activity;0.0037138136789055!GO:0016363;nuclear matrix;0.00384454715122066!GO:0051187;cofactor catabolic process;0.00400149018919091!GO:0006643;membrane lipid metabolic process;0.00414039035379998!GO:0043021;ribonucleoprotein binding;0.00414039035379998!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00420117941825389!GO:0046966;thyroid hormone receptor binding;0.00445620040365936!GO:0031072;heat shock protein binding;0.00464418411681148!GO:0003690;double-stranded DNA binding;0.00467478210618095!GO:0006607;NLS-bearing substrate import into nucleus;0.00477869713651224!GO:0006099;tricarboxylic acid cycle;0.00477869713651224!GO:0046356;acetyl-CoA catabolic process;0.00477869713651224!GO:0043281;regulation of caspase activity;0.00478015706535806!GO:0018193;peptidyl-amino acid modification;0.00494127902462554!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00503582723228044!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00503582723228044!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00503582723228044!GO:0002274;myeloid leukocyte activation;0.00503582723228044!GO:0065004;protein-DNA complex assembly;0.00503601758219961!GO:0043085;positive regulation of catalytic activity;0.00508259382755796!GO:0002764;immune response-regulating signal transduction;0.00523965223037271!GO:0043280;positive regulation of caspase activity;0.00528842290928248!GO:0045859;regulation of protein kinase activity;0.00555599944061166!GO:0000287;magnesium ion binding;0.00562336224705943!GO:0005813;centrosome;0.00571505768514645!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00594512345682631!GO:0030041;actin filament polymerization;0.00624248339547061!GO:0051707;response to other organism;0.00659005483388648!GO:0045454;cell redox homeostasis;0.00695873207296858!GO:0007259;JAK-STAT cascade;0.00696022349573264!GO:0019867;outer membrane;0.00701215678045853!GO:0030027;lamellipodium;0.0070673703052526!GO:0006954;inflammatory response;0.00716838742725563!GO:0006611;protein export from nucleus;0.00717152698353309!GO:0006891;intra-Golgi vesicle-mediated transport;0.00722803012939909!GO:0004197;cysteine-type endopeptidase activity;0.00729453584114996!GO:0009165;nucleotide biosynthetic process;0.00730461432342133!GO:0006084;acetyl-CoA metabolic process;0.00730461432342133!GO:0032386;regulation of intracellular transport;0.00769128861724376!GO:0032318;regulation of Ras GTPase activity;0.00773704330901204!GO:0022415;viral reproductive process;0.00786373942531607!GO:0016791;phosphoric monoester hydrolase activity;0.00786373942531607!GO:0006355;regulation of transcription, DNA-dependent;0.00825782708338239!GO:0031968;organelle outer membrane;0.00858627076613444!GO:0031625;ubiquitin protein ligase binding;0.00872769671895435!GO:0006458;'de novo' protein folding;0.00906281062302352!GO:0051084;'de novo' posttranslational protein folding;0.00906281062302352!GO:0004185;serine carboxypeptidase activity;0.00968418816790735!GO:0005484;SNAP receptor activity;0.00982602131350473!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0105278680525821!GO:0006333;chromatin assembly or disassembly;0.0107319940735016!GO:0051056;regulation of small GTPase mediated signal transduction;0.0108599794595969!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0109478534086393!GO:0030134;ER to Golgi transport vesicle;0.0109478534086393!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0111162914809829!GO:0003725;double-stranded RNA binding;0.0111168610796407!GO:0019377;glycolipid catabolic process;0.0116478486332156!GO:0030118;clathrin coat;0.0116478486332156!GO:0030658;transport vesicle membrane;0.0117534070276153!GO:0030127;COPII vesicle coat;0.0122396106716395!GO:0012507;ER to Golgi transport vesicle membrane;0.0122396106716395!GO:0043488;regulation of mRNA stability;0.0124817730404592!GO:0043487;regulation of RNA stability;0.0124817730404592!GO:0030867;rough endoplasmic reticulum membrane;0.0127055282492483!GO:0001819;positive regulation of cytokine production;0.0133527842170892!GO:0005048;signal sequence binding;0.0135037730757167!GO:0003702;RNA polymerase II transcription factor activity;0.0135037730757167!GO:0051092;activation of NF-kappaB transcription factor;0.0147580925861469!GO:0009109;coenzyme catabolic process;0.0147580925861469!GO:0033367;protein localization in mast cell secretory granule;0.0147580925861469!GO:0033365;protein localization in organelle;0.0147580925861469!GO:0033371;T cell secretory granule organization and biogenesis;0.0147580925861469!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0147580925861469!GO:0033375;protease localization in T cell secretory granule;0.0147580925861469!GO:0042629;mast cell granule;0.0147580925861469!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0147580925861469!GO:0033364;mast cell secretory granule organization and biogenesis;0.0147580925861469!GO:0033380;granzyme B localization in T cell secretory granule;0.0147580925861469!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0147580925861469!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0147580925861469!GO:0033368;protease localization in mast cell secretory granule;0.0147580925861469!GO:0033366;protein localization in secretory granule;0.0147580925861469!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0147580925861469!GO:0033374;protein localization in T cell secretory granule;0.0147580925861469!GO:0048500;signal recognition particle;0.015012495901252!GO:0017166;vinculin binding;0.0150954951916987!GO:0019318;hexose metabolic process;0.0150954951916987!GO:0008624;induction of apoptosis by extracellular signals;0.0150954951916987!GO:0004177;aminopeptidase activity;0.0150954951916987!GO:0001817;regulation of cytokine production;0.0153862682953201!GO:0030518;steroid hormone receptor signaling pathway;0.015490822804819!GO:0008286;insulin receptor signaling pathway;0.015608482629655!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0158451038621121!GO:0008139;nuclear localization sequence binding;0.0159783120583138!GO:0030176;integral to endoplasmic reticulum membrane;0.0160031309063985!GO:0006405;RNA export from nucleus;0.0166940892050731!GO:0045637;regulation of myeloid cell differentiation;0.0168624840737409!GO:0030663;COPI coated vesicle membrane;0.0172853995331687!GO:0030126;COPI vesicle coat;0.0172853995331687!GO:0004722;protein serine/threonine phosphatase activity;0.0172897437041995!GO:0000118;histone deacetylase complex;0.0172897437041995!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0172897437041995!GO:0030097;hemopoiesis;0.017379711473334!GO:0005070;SH3/SH2 adaptor activity;0.0177535057156694!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0177604613594708!GO:0030137;COPI-coated vesicle;0.0181085816599412!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0184285420026522!GO:0008287;protein serine/threonine phosphatase complex;0.0184990319001815!GO:0006650;glycerophospholipid metabolic process;0.0195579805057371!GO:0005815;microtubule organizing center;0.0197065017463052!GO:0005694;chromosome;0.019761881472247!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0197757709919311!GO:0046578;regulation of Ras protein signal transduction;0.0199915323022752!GO:0015631;tubulin binding;0.0199915323022752!GO:0003711;transcription elongation regulator activity;0.0200930313891439!GO:0043433;negative regulation of transcription factor activity;0.0200930313891439!GO:0042802;identical protein binding;0.020231829159695!GO:0030660;Golgi-associated vesicle membrane;0.0205696052815176!GO:0030258;lipid modification;0.0207551946585786!GO:0046479;glycosphingolipid catabolic process;0.0212332441957638!GO:0005996;monosaccharide metabolic process;0.0213105951984654!GO:0043300;regulation of leukocyte degranulation;0.0221563252530796!GO:0000209;protein polyubiquitination;0.0221563252530796!GO:0002444;myeloid leukocyte mediated immunity;0.0221966461568108!GO:0006414;translational elongation;0.0227444960544161!GO:0046466;membrane lipid catabolic process;0.0230311357062128!GO:0045920;negative regulation of exocytosis;0.0231117298990602!GO:0043301;negative regulation of leukocyte degranulation;0.0231117298990602!GO:0043305;negative regulation of mast cell degranulation;0.0231117298990602!GO:0019783;small conjugating protein-specific protease activity;0.0231701509290015!GO:0006516;glycoprotein catabolic process;0.0233748089205264!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0234112281622122!GO:0045047;protein targeting to ER;0.0234112281622122!GO:0030521;androgen receptor signaling pathway;0.0234792676085266!GO:0043621;protein self-association;0.0234792676085266!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0234792676085266!GO:0002819;regulation of adaptive immune response;0.0234792676085266!GO:0008656;caspase activator activity;0.0238170749831429!GO:0051345;positive regulation of hydrolase activity;0.0241253290803308!GO:0050811;GABA receptor binding;0.024499953065706!GO:0030384;phosphoinositide metabolic process;0.0247110964386296!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0249336074037089!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0249336074037089!GO:0008637;apoptotic mitochondrial changes;0.0253528710377666!GO:0006383;transcription from RNA polymerase III promoter;0.0254966208550649!GO:0048471;perinuclear region of cytoplasm;0.0258817372627281!GO:0051085;chaperone cofactor-dependent protein folding;0.0267674593773544!GO:0019843;rRNA binding;0.0267674593773544!GO:0006665;sphingolipid metabolic process;0.0267935912072868!GO:0004843;ubiquitin-specific protease activity;0.0267966329425195!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0273009920393395!GO:0045576;mast cell activation;0.0273265924428798!GO:0046467;membrane lipid biosynthetic process;0.0284980017162065!GO:0051101;regulation of DNA binding;0.0289188582862091!GO:0051098;regulation of binding;0.0292791551163598!GO:0030119;AP-type membrane coat adaptor complex;0.0293469642236854!GO:0006914;autophagy;0.029409396984409!GO:0006091;generation of precursor metabolites and energy;0.0303589651277703!GO:0016311;dephosphorylation;0.0304530128418372!GO:0045113;regulation of integrin biosynthetic process;0.030495975551457!GO:0045112;integrin biosynthetic process;0.030495975551457!GO:0051091;positive regulation of transcription factor activity;0.0305291366178212!GO:0032763;regulation of mast cell cytokine production;0.030546713248073!GO:0032762;mast cell cytokine production;0.030546713248073!GO:0000785;chromatin;0.0309406712695917!GO:0030218;erythrocyte differentiation;0.0310452942065805!GO:0043299;leukocyte degranulation;0.0310953496586425!GO:0008312;7S RNA binding;0.0319113802333644!GO:0015923;mannosidase activity;0.0319905597257706!GO:0050851;antigen receptor-mediated signaling pathway;0.032047755116088!GO:0006260;DNA replication;0.0321371985881988!GO:0033033;negative regulation of myeloid cell apoptosis;0.0321371985881988!GO:0001803;regulation of type III hypersensitivity;0.0321371985881988!GO:0032733;positive regulation of interleukin-10 production;0.0321371985881988!GO:0033025;regulation of mast cell apoptosis;0.0321371985881988!GO:0001805;positive regulation of type III hypersensitivity;0.0321371985881988!GO:0033023;mast cell homeostasis;0.0321371985881988!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0321371985881988!GO:0033032;regulation of myeloid cell apoptosis;0.0321371985881988!GO:0001802;type III hypersensitivity;0.0321371985881988!GO:0033028;myeloid cell apoptosis;0.0321371985881988!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0321371985881988!GO:0033026;negative regulation of mast cell apoptosis;0.0321371985881988!GO:0033024;mast cell apoptosis;0.0321371985881988!GO:0005669;transcription factor TFIID complex;0.032375100716036!GO:0008625;induction of apoptosis via death domain receptors;0.032808113710242!GO:0008017;microtubule binding;0.0336705922984402!GO:0051049;regulation of transport;0.033692903905281!GO:0002467;germinal center formation;0.0339962140765793!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0340337529780296!GO:0000082;G1/S transition of mitotic cell cycle;0.034158549230425!GO:0045309;protein phosphorylated amino acid binding;0.0341793109777073!GO:0030133;transport vesicle;0.0345209954850419!GO:0006509;membrane protein ectodomain proteolysis;0.0347448591512815!GO:0033619;membrane protein proteolysis;0.0347448591512815!GO:0000339;RNA cap binding;0.0348455873209648!GO:0035035;histone acetyltransferase binding;0.0348559896850347!GO:0032640;tumor necrosis factor production;0.0349532483362138!GO:0006376;mRNA splice site selection;0.0359284138235395!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0359284138235395!GO:0043022;ribosome binding;0.0360852049186019!GO:0019883;antigen processing and presentation of endogenous antigen;0.0366863924536441!GO:0043506;regulation of JNK activity;0.0369292470505781!GO:0016788;hydrolase activity, acting on ester bonds;0.0369382998289455!GO:0008383;manganese superoxide dismutase activity;0.0369382998289455!GO:0001315;age-dependent response to reactive oxygen species;0.0369382998289455!GO:0040029;regulation of gene expression, epigenetic;0.036939652756732!GO:0002224;toll-like receptor signaling pathway;0.036939652756732!GO:0002221;pattern recognition receptor signaling pathway;0.036939652756732!GO:0051087;chaperone binding;0.0373891912843501!GO:0015036;disulfide oxidoreductase activity;0.038657723698282!GO:0032760;positive regulation of tumor necrosis factor production;0.0387931051760617!GO:0017091;AU-rich element binding;0.0387931051760617!GO:0050779;RNA destabilization;0.0387931051760617!GO:0000289;poly(A) tail shortening;0.0387931051760617!GO:0002237;response to molecule of bacterial origin;0.0395749814905095!GO:0048002;antigen processing and presentation of peptide antigen;0.0395749814905095!GO:0030131;clathrin adaptor complex;0.0396252698179263!GO:0008538;proteasome activator activity;0.0399997677099168!GO:0030503;regulation of cell redox homeostasis;0.0400632862953801!GO:0006354;RNA elongation;0.0409507480810657!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0410022143700761!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0410022143700761!GO:0051235;maintenance of localization;0.0411628919906658!GO:0003899;DNA-directed RNA polymerase activity;0.0417243291522461!GO:0006689;ganglioside catabolic process;0.041812534418653!GO:0046426;negative regulation of JAK-STAT cascade;0.0421585763521073!GO:0045792;negative regulation of cell size;0.0421692197303922!GO:0004402;histone acetyltransferase activity;0.0426675464855646!GO:0004468;lysine N-acetyltransferase activity;0.0426675464855646!GO:0000119;mediator complex;0.0430617843192984!GO:0003727;single-stranded RNA binding;0.0430617843192984!GO:0004221;ubiquitin thiolesterase activity;0.0432060609687967!GO:0030833;regulation of actin filament polymerization;0.0432331950621375!GO:0003746;translation elongation factor activity;0.0438607829206112!GO:0035258;steroid hormone receptor binding;0.0450567415098366!GO:0045603;positive regulation of endothelial cell differentiation;0.045241798140358!GO:0051219;phosphoprotein binding;0.0454103268614478!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0456523385475965!GO:0002821;positive regulation of adaptive immune response;0.0456523385475965!GO:0042613;MHC class II protein complex;0.0460013740448904!GO:0008333;endosome to lysosome transport;0.0461040658933751!GO:0005684;U2-dependent spliceosome;0.0467171069479847!GO:0004563;beta-N-acetylhexosaminidase activity;0.0471944959817184!GO:0005869;dynactin complex;0.0479812858759742!GO:0033673;negative regulation of kinase activity;0.0481156370220098!GO:0006469;negative regulation of protein kinase activity;0.0481156370220098!GO:0005975;carbohydrate metabolic process;0.0482790275117123!GO:0000049;tRNA binding;0.0482790275117123
 |sample_id=11883
 |sample_note=
@@ Line 75: / Line 100: @@
 |sample_tissue=
 |top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11883-125D2;search_select_hide=table117:FF:11883-125D2
 }}

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FF:11883-125D2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0