FF:11883-125D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004822 | |DRA_sample_Accession=CAGE@SAMD00004822 | ||
|accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816 | |accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816;DRZ011781;DRZ013166 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.74!547.27!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.52!333.80!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.46!287.95!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.28!190.91!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.27!187.27!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.15!139.00!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.81!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.09!220.99!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.95!88.30!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.95!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.79!244.28!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.79!61.13!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.78!655.70!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.77!58.46!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!1.75!149.43!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.72!61.13!ATF5;;chr2:145277640..145277771,-!p1@ZEB2!1.65!557.94!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.51!OLIG1;;chr7:50344289..50344323,+!p1@IKZF1!1.59!37.84!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.53!79.81!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.52!104.80!BACH1;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!39.06!PLAGL1;;chr2:70142232..70142251,+!p1@MXD1!1.51!168.11!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.49!532.47!FOSB;;chr11:47400045..47400060,-!p6@SPI1!1.49!30.08!SPI1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.60!ZBED1;;chr19:13213662..13213686,-!p1@LYL1!1.47!41.72!LYL1;;chr12:48298765..48298783,-!p2@VDR!1.44!54.10!VDR;;chr7:128577972..128578047,+!p1@IRF5!1.42!39.54!IRF5;;chr10:51572339..51572376,+!p4@NCOA4!1.38!50.94!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.38!27.90!NFE2;;chr19:42636586..42636607,-!p1@POU2F2!1.36!59.68!POU2F2;;chr10:51572408..51572454,+!p3@NCOA4!1.34!118.87!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.32!103.34!VDR;;chr12:96588279..96588299,+!p4@ELK3!1.32!91.21!ELK3;;chr1:25256439..25256476,-!p3@RUNX3!1.32!20.13!RUNX3;;chr9:117150254..117150271,-!p1@AKNA!1.31!52.40!AKNA;;chr12:96588368..96588394,+!p3@ELK3!1.31!51.43!ELK3;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.56!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.31!19.41!OLIG2;;chr2:145275162..145275202,-!p2@ZEB2!1.30!109.16!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.30!101.16!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.30!18.92!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.51!ETV6;;chr16:31885093..31885165,+!p1@ZNF267!1.28!266.11!ZNF267;;chrX:129244454..129244488,-!p1@ELF4!1.28!127.84!ELF4;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.19!LRRFIP1;;chr20:48599506..48599526,+!p1@SNAI1!1.27!110.62!SNAI1;;chr12:96588219..96588263,+!p2@ELK3!1.26!122.26!ELK3;;chr21:36260295..36260310,-!p3@RUNX1!1.26!27.65!RUNX1;;chr17:38497662..38497713,+!p4@RARA!1.26!20.13!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.26!17.22!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.25!103.83!ELF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.24!158.89!NFKBIE;;chr5:88178983..88179012,-!p1@MEF2C!1.24!123.72!MEF2C;;chr12:124873852..124873881,-!p3@NCOR2!1.24!96.55!NCOR2;;chr10:31288370..31288393,-!p3@ZNF438!1.24!16.25!ZNF438;;chr4:106068026..106068084,+!p1@TET2!1.23!139.97!TET2;;chr14:35872453..35872485,-!p2@NFKBIA!1.23!38.81!NFKBIA;;chr21:30671235..30671253,+!p1@BACH1!1.21!188.49!BACH1;;chr6:15246200..15246214,+!p2@JARID2!1.21!41.97!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.21!32.26!TGIF1;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.28!BCL3;;chr19:19496539..19496576,+!p8@GATAD2A!1.20!25.71!GATAD2A;;chr21:36421535..36421610,-!p2@RUNX1!1.19!51.43!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.90!BCL3;;chr7:17338266..17338282,+!p1@AHR!1.14!137.30!AHR;;chr2:70314240..70314256,+!p4@PCBP1!1.14!26.20!PCBP1;;chr6:391743..391759,+!p1@IRF4!1.13!12.37!IRF4;;chr19:13213954..13214021,-!p4@LYL1!1.13!12.37!LYL1;;chrX:106960285..106960299,-!p1@TSC22D3!1.12!327.73!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.12!12.13!IKZF1;;chr21:30672433..30672464,+!p6@BACH1!1.11!11.89!BACH1;;chr9:110252035..110252057,-!p1@KLF4!1.09!181.21!KLF4;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.65!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.07!35.42!BCL3;;chr3:170075436..170075520,+!p1@SKIL!1.06!228.76!SKIL;;chr2:61108695..61108753,+!p1@REL!1.06!73.02!REL;;chr1:156470515..156470542,-!p2@MEF2D!1.06!55.07!MEF2D;;chr10:94449703..94449718,+!p1@HHEX!1.06!40.51!HHEX;;chr7:17338324..17338341,+!p3@AHR!1.06!35.66!AHR;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.87!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.82!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.84!RXRA;;chr3:12329397..12329433,+!p2@PPARG!1.05!23.53!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.04!272.42!ATF3;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.86!EGR2;;chr19:36391434..36391450,-!p1@NFKBID!1.04!19.89!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.04!13.10!THAP2;;chr1:25291620..25291635,-!p4@RUNX3!1.04!9.95!RUNX3;;chr20:48807351..48807384,+!p1@CEBPB!1.03!1002.36!CEBPB;;chr8:22550982..22550999,-!p1@EGR3!1.03!28.14!EGR3;;chr2:185463247..185463263,+!p1@ZNF804A!1.03!17.22!ZNF804A;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr2:97202480..97202499,+!p1@ARID5A!1.02!98.00!ARID5A;;chr15:90544532..90544563,+!p1@ZNF710!1.02!19.41!ZNF710;;chr12:72056749..72056767,+!p6@THAP2!1.02!10.43!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!67.44!ETV3;;chr17:38498402..38498445,+!p3@RARA!1.01!34.20!RARA;;chr9:129567282..129567353,+!p1@ZBTB43!0.99!118.14!ZBTB43;;chr7:28725740..28725778,+!p1@CREB5!0.99!79.32!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.99!30.08!RARA;;chr2:231280954..231280965,+!p2@SP100!0.99!16.50!SP100;;chr10:135044190..135044229,+!p3@UTF1!0.99!8.73!UTF1;;chr11:615942..615957,-!p1@IRF7!0.98!83.21!IRF7;;chr19:19496624..19496660,+!p3@GATAD2A!0.98!40.51!GATAD2A;;chr8:116681123..116681143,-!p4@TRPS1!0.98!16.98!TRPS1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.34!TGIF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!543.87!NFKBIA;;chr17:38474489..38474548,+!p1@RARA!0.97!269.51!RARA;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.44!NR4A1;;chr15:31619013..31619095,+!p1@KLF13!0.96!195.52!KLF13;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.83!NCOA2;;chr10:3827371..3827386,-!p2@KLF6!0.95!68.89!KLF6;;chr2:157189180..157189290,-!p1@NR4A2!0.95!42.69!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!0.95!30.81!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!0.95!13.83!FOSL2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.95!10.67!ZCCHC6;;chr5:131826457..131826514,-!p1@IRF1!0.94!316.09!IRF1;;chr6:15246261..15246312,+!p1@JARID2!0.94!194.31!JARID2;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.52!NFKB2;;chr8:116681150..116681164,-!p5@TRPS1!0.94!15.28!TRPS1;;chr18:3449618..3449634,+!p13@TGIF1!0.94!9.70!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.76!CREB3L2;;chr10:104155480..104155534,+!p2@NFKB2!0.93!50.46!NFKB2;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.13!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!0.92!11.89!IRF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.40!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!0.92!7.28!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.91!888.10!FOS;;chr9:88969339..88969422,-!p2@ZCCHC6!0.91!57.74!ZCCHC6;;chr14:74226747..74226779,-!p3@C14orf43!0.91!41.48!C14orf43;;chr5:142782823..142782854,-!p3@NR3C1!0.91!10.43!NR3C1;;chr2:208031943..208031978,-!p5@KLF7!0.91!9.70!KLF7;;chr17:40440481..40440550,+!p1@STAT5A!0.90!52.64!STAT5A;;chr2:68592394..68592405,+!p2@PLEK!0.90!7.03!PLEK;;chr19:45251943..45252006,+!p1@BCL3!0.89!189.22!BCL3;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.02!ZNF467;;chr1:156470494..156470505,-!p3@MEF2D!0.89!9.95!MEF2D;;chr12:11802690..11802704,+!p4@ETV6!0.89!9.95!ETV6;;chr3:39195037..39195069,-!p2@CSRNP1!0.88!43.42!CSRNP1;;chr18:3449586..3449617,+!p8@TGIF1!0.88!10.92!TGIF1;;chr12:72056800..72056834,+!p1@THAP2!0.88!8.98!THAP2;;chr2:61108808..61108821,+!p3@REL!0.88!8.49!REL;;chr13:41593392..41593403,-!p7@ELF1!0.88!6.55!ELF1;;chr15:90545434..90545449,+!p9@ZNF710!0.88!6.55!ZNF710;;chr8:116681194..116681214,-!p1@TRPS1!0.87!63.56!TRPS1;;chr2:208394817..208394834,+!p3@CREB1!0.87!26.93!CREB1;;chr9:3525727..3525828,-!p2@RFX3!0.87!17.22!RFX3;;chr6:34204973..34204990,+!p4@HMGA1!0.86!87.82!HMGA1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.86!19.41!ZBTB7A;;chr14:35872962..35873025,-!p3@NFKBIA!0.86!16.50!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!0.86!6.31!NFE2;;chr19:50432104..50432126,+!p6@ATF5!0.86!6.31!ATF5;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.08!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.85!78.84!FLI1;;chr18:3449527..3449582,+!p6@TGIF1!0.85!11.89!TGIF1;;chr1:114302066..114302080,-!p2@PHTF1!0.85!11.40!PHTF1;;chr12:11802932..11802949,+!p3@ETV6!0.85!10.92!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.85!6.06!SP140;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.16!IFI16;;chr10:94449675..94449694,+!p2@HHEX!0.84!16.74!HHEX;;chr13:41635029..41635044,-!p4@ELF1!0.84!13.10!ELF1;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.89!ZNF276;;chr2:28615716..28615733,+!p1@FOSL2!0.83!293.77!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.64!CEBPB;;chr4:185395590..185395627,-!p3@IRF2!0.83!7.28!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!0.83!7.28!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.82!TFEC;;chr17:38497715..38497734,+!p8@RARA!0.83!5.82!RARA;;chr1:25291648..25291665,-!p7@RUNX3!0.83!5.82!RUNX3;;chr12:54778444..54778451,-!p8@ZNF385A!0.83!5.82!ZNF385A;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!120.08!LRRFIP1;;chr7:17338239..17338262,+!p2@AHR!0.82!45.12!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.63!RFX2;;chrX:129244840..129244881,-!p2@ELF4!0.82!23.05!ELF4;;chr6:15246217..15246228,+!p3@JARID2!0.82!10.43!JARID2;;chr6:41703296..41703367,-!p1@TFEB!0.81!29.35!TFEB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.81!24.74!LRRFIP2;;chr14:75988771..75988826,+!p1@BATF!0.81!7.52!BATF;;chr19:45254529..45254561,+!p10@BCL3!0.81!7.52!BCL3;;chr10:104155659..104155676,+!p4@NFKB2!0.81!7.03!NFKB2;;chr2:145275228..145275241,-!p11@ZEB2!0.81!6.79!ZEB2;;chr21:36260980..36261011,-!p1@RUNX1!0.80!164.96!RUNX1;;chr9:117160738..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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.74!547.27!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.52!333.80!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.46!287.95!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.28!190.91!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.27!187.27!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.15!139.00!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.81!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.09!220.99!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.95!88.30!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.95!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.79!244.28!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.79!61.13!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.78!655.70!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.77!58.46!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!1.75!149.43!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.72!61.13!ATF5;;chr2:145277640..145277771,-!p1@ZEB2!1.65!557.94!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.51!OLIG1;;chr7:50344289..50344323,+!p1@IKZF1!1.59!37.84!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.53!79.81!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.52!104.80!BACH1;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!39.06!PLAGL1;;chr2:70142232..70142251,+!p1@MXD1!1.51!168.11!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.49!532.47!FOSB;;chr11:47400045..47400060,-!p6@SPI1!1.49!30.08!SPI1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.60!ZBED1;;chr19:13213662..13213686,-!p1@LYL1!1.47!41.72!LYL1;;chr12:48298765..48298783,-!p2@VDR!1.44!54.10!VDR;;chr7:128577972..128578047,+!p1@IRF5!1.42!39.54!IRF5;;chr10:51572339..51572376,+!p4@NCOA4!1.38!50.94!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.38!27.90!NFE2;;chr19:42636586..42636607,-!p1@POU2F2!1.36!59.68!POU2F2;;chr10:51572408..51572454,+!p3@NCOA4!1.34!118.87!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.32!103.34!VDR;;chr12:96588279..96588299,+!p4@ELK3!1.32!91.21!ELK3;;chr1:25256439..25256476,-!p3@RUNX3!1.32!20.13!RUNX3;;chr9:117150254..117150271,-!p1@AKNA!1.31!52.40!AKNA;;chr12:96588368..96588394,+!p3@ELK3!1.31!51.43!ELK3;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.56!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.31!19.41!OLIG2;;chr2:145275162..145275202,-!p2@ZEB2!1.30!109.16!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.30!101.16!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.30!18.92!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.51!ETV6;;chr16:31885093..31885165,+!p1@ZNF267!1.28!266.11!ZNF267;;chrX:129244454..129244488,-!p1@ELF4!1.28!127.84!ELF4;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.19!LRRFIP1;;chr20:48599506..48599526,+!p1@SNAI1!1.27!110.62!SNAI1;;chr12:96588219..96588263,+!p2@ELK3!1.26!122.26!ELK3;;chr21:36260295..36260310,-!p3@RUNX1!1.26!27.65!RUNX1;;chr17:38497662..38497713,+!p4@RARA!1.26!20.13!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.26!17.22!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.25!103.83!ELF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.24!158.89!NFKBIE;;chr5:88178983..88179012,-!p1@MEF2C!1.24!123.72!MEF2C;;chr12:124873852..124873881,-!p3@NCOR2!1.24!96.55!NCOR2;;chr10:31288370..31288393,-!p3@ZNF438!1.24!16.25!ZNF438;;chr4:106068026..106068084,+!p1@TET2!1.23!139.97!TET2;;chr14:35872453..35872485,-!p2@NFKBIA!1.23!38.81!NFKBIA;;chr21:30671235..30671253,+!p1@BACH1!1.21!188.49!BACH1;;chr6:15246200..15246214,+!p2@JARID2!1.21!41.97!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.21!32.26!TGIF1;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.28!BCL3;;chr19:19496539..19496576,+!p8@GATAD2A!1.20!25.71!GATAD2A;;chr21:36421535..36421610,-!p2@RUNX1!1.19!51.43!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.90!BCL3;;chr7:17338266..17338282,+!p1@AHR!1.14!137.30!AHR;;chr2:70314240..70314256,+!p4@PCBP1!1.14!26.20!PCBP1;;chr6:391743..391759,+!p1@IRF4!1.13!12.37!IRF4;;chr19:13213954..13214021,-!p4@LYL1!1.13!12.37!LYL1;;chrX:106960285..106960299,-!p1@TSC22D3!1.12!327.73!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.12!12.13!IKZF1;;chr21:30672433..30672464,+!p6@BACH1!1.11!11.89!BACH1;;chr9:110252035..110252057,-!p1@KLF4!1.09!181.21!KLF4;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.65!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.07!35.42!BCL3;;chr3:170075436..170075520,+!p1@SKIL!1.06!228.76!SKIL;;chr2:61108695..61108753,+!p1@REL!1.06!73.02!REL;;chr1:156470515..156470542,-!p2@MEF2D!1.06!55.07!MEF2D;;chr10:94449703..94449718,+!p1@HHEX!1.06!40.51!HHEX;;chr7:17338324..17338341,+!p3@AHR!1.06!35.66!AHR;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.87!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.82!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.84!RXRA;;chr3:12329397..12329433,+!p2@PPARG!1.05!23.53!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.04!272.42!ATF3;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.86!EGR2;;chr19:36391434..36391450,-!p1@NFKBID!1.04!19.89!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.04!13.10!THAP2;;chr1:25291620..25291635,-!p4@RUNX3!1.04!9.95!RUNX3;;chr20:48807351..48807384,+!p1@CEBPB!1.03!1002.36!CEBPB;;chr8:22550982..22550999,-!p1@EGR3!1.03!28.14!EGR3;;chr2:185463247..185463263,+!p1@ZNF804A!1.03!17.22!ZNF804A;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr2:97202480..97202499,+!p1@ARID5A!1.02!98.00!ARID5A;;chr15:90544532..90544563,+!p1@ZNF710!1.02!19.41!ZNF710;;chr12:72056749..72056767,+!p6@THAP2!1.02!10.43!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!67.44!ETV3;;chr17:38498402..38498445,+!p3@RARA!1.01!34.20!RARA;;chr9:129567282..129567353,+!p1@ZBTB43!0.99!118.14!ZBTB43;;chr7:28725740..28725778,+!p1@CREB5!0.99!79.32!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.99!30.08!RARA;;chr2:231280954..231280965,+!p2@SP100!0.99!16.50!SP100;;chr10:135044190..135044229,+!p3@UTF1!0.99!8.73!UTF1;;chr11:615942..615957,-!p1@IRF7!0.98!83.21!IRF7;;chr19:19496624..19496660,+!p3@GATAD2A!0.98!40.51!GATAD2A;;chr8:116681123..116681143,-!p4@TRPS1!0.98!16.98!TRPS1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.34!TGIF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!543.87!NFKBIA;;chr17:38474489..38474548,+!p1@RARA!0.97!269.51!RARA;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.44!NR4A1;;chr15:31619013..31619095,+!p1@KLF13!0.96!195.52!KLF13;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.83!NCOA2;;chr10:3827371..3827386,-!p2@KLF6!0.95!68.89!KLF6;;chr2:157189180..157189290,-!p1@NR4A2!0.95!42.69!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!0.95!30.81!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!0.95!13.83!FOSL2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.95!10.67!ZCCHC6;;chr5:131826457..131826514,-!p1@IRF1!0.94!316.09!IRF1;;chr6:15246261..15246312,+!p1@JARID2!0.94!194.31!JARID2;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.52!NFKB2;;chr8:116681150..116681164,-!p5@TRPS1!0.94!15.28!TRPS1;;chr18:3449618..3449634,+!p13@TGIF1!0.94!9.70!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.76!CREB3L2;;chr10:104155480..104155534,+!p2@NFKB2!0.93!50.46!NFKB2;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.13!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!0.92!11.89!IRF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.40!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!0.92!7.28!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.91!888.10!FOS;;chr9:88969339..88969422,-!p2@ZCCHC6!0.91!57.74!ZCCHC6;;chr14:74226747..74226779,-!p3@C14orf43!0.91!41.48!C14orf43;;chr5:142782823..142782854,-!p3@NR3C1!0.91!10.43!NR3C1;;chr2:208031943..208031978,-!p5@KLF7!0.91!9.70!KLF7;;chr17:40440481..40440550,+!p1@STAT5A!0.90!52.64!STAT5A;;chr2:68592394..68592405,+!p2@PLEK!0.90!7.03!PLEK;;chr19:45251943..45252006,+!p1@BCL3!0.89!189.22!BCL3;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.02!ZNF467;;chr1:156470494..156470505,-!p3@MEF2D!0.89!9.95!MEF2D;;chr12:11802690..11802704,+!p4@ETV6!0.89!9.95!ETV6;;chr3:39195037..39195069,-!p2@CSRNP1!0.88!43.42!CSRNP1;;chr18:3449586..3449617,+!p8@TGIF1!0.88!10.92!TGIF1;;chr12:72056800..72056834,+!p1@THAP2!0.88!8.98!THAP2;;chr2:61108808..61108821,+!p3@REL!0.88!8.49!REL;;chr13:41593392..41593403,-!p7@ELF1!0.88!6.55!ELF1;;chr15:90545434..90545449,+!p9@ZNF710!0.88!6.55!ZNF710;;chr8:116681194..116681214,-!p1@TRPS1!0.87!63.56!TRPS1;;chr2:208394817..208394834,+!p3@CREB1!0.87!26.93!CREB1;;chr9:3525727..3525828,-!p2@RFX3!0.87!17.22!RFX3;;chr6:34204973..34204990,+!p4@HMGA1!0.86!87.82!HMGA1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.86!19.41!ZBTB7A;;chr14:35872962..35873025,-!p3@NFKBIA!0.86!16.50!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!0.86!6.31!NFE2;;chr19:50432104..50432126,+!p6@ATF5!0.86!6.31!ATF5;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.08!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.85!78.84!FLI1;;chr18:3449527..3449582,+!p6@TGIF1!0.85!11.89!TGIF1;;chr1:114302066..114302080,-!p2@PHTF1!0.85!11.40!PHTF1;;chr12:11802932..11802949,+!p3@ETV6!0.85!10.92!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.85!6.06!SP140;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.16!IFI16;;chr10:94449675..94449694,+!p2@HHEX!0.84!16.74!HHEX;;chr13:41635029..41635044,-!p4@ELF1!0.84!13.10!ELF1;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.89!ZNF276;;chr2:28615716..28615733,+!p1@FOSL2!0.83!293.77!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.64!CEBPB;;chr4:185395590..185395627,-!p3@IRF2!0.83!7.28!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!0.83!7.28!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.82!TFEC;;chr17:38497715..38497734,+!p8@RARA!0.83!5.82!RARA;;chr1:25291648..25291665,-!p7@RUNX3!0.83!5.82!RUNX3;;chr12:54778444..54778451,-!p8@ZNF385A!0.83!5.82!ZNF385A;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!120.08!LRRFIP1;;chr7:17338239..17338262,+!p2@AHR!0.82!45.12!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.63!RFX2;;chrX:129244840..129244881,-!p2@ELF4!0.82!23.05!ELF4;;chr6:15246217..15246228,+!p3@JARID2!0.82!10.43!JARID2;;chr6:41703296..41703367,-!p1@TFEB!0.81!29.35!TFEB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.81!24.74!LRRFIP2;;chr14:75988771..75988826,+!p1@BATF!0.81!7.52!BATF;;chr19:45254529..45254561,+!p10@BCL3!0.81!7.52!BCL3;;chr10:104155659..104155676,+!p4@NFKB2!0.81!7.03!NFKB2;;chr2:145275228..145275241,-!p11@ZEB2!0.81!6.79!ZEB2;;chr21:36260980..36261011,-!p1@RUNX1!0.80!164.96!RUNX1;;chr9:117160738..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11883-125D2 | |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11883-125D2 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11883-125D2 | |id=FF:11883-125D2 | ||
|is_a=EFO:0002091;;FF:0011101 | |is_a=EFO:0002091;;FF:0011101 | ||
Line 46: | Line 52: | ||
|library_id=CNhs13491 | |library_id=CNhs13491 | ||
|library_id_phase_based=2:CNhs13491 | |library_id_phase_based=2:CNhs13491 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11883 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11883 | |||
|name=CD14+ monocytes - mock treated, donor3 | |name=CD14+ monocytes - mock treated, donor3 | ||
|namespace= | |namespace= | ||
Line 53: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 90: | Line 101: | ||
|top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336 | |top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11883-125D2;search_select_hide=table117:FF:11883-125D2 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - mock treated, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13491 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13491
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13491
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.156 |
10 | 10 | 0.0223 |
100 | 100 | 0.668 |
101 | 101 | 0.67 |
102 | 102 | 0.396 |
103 | 103 | 0.301 |
104 | 104 | 0.541 |
105 | 105 | 0.28 |
106 | 106 | 6.99327e-4 |
107 | 107 | 0.243 |
108 | 108 | 0.992 |
109 | 109 | 0.187 |
11 | 11 | 0.216 |
110 | 110 | 0.369 |
111 | 111 | 0.049 |
112 | 112 | 0.27 |
113 | 113 | 0.475 |
114 | 114 | 0.0191 |
115 | 115 | 0.214 |
116 | 116 | 0.875 |
117 | 117 | 0.0306 |
118 | 118 | 0.216 |
119 | 119 | 0.173 |
12 | 12 | 0.337 |
120 | 120 | 0.675 |
121 | 121 | 0.532 |
122 | 122 | 0.675 |
123 | 123 | 0.0411 |
124 | 124 | 0.673 |
125 | 125 | 0.816 |
126 | 126 | 0.159 |
127 | 127 | 0.228 |
128 | 128 | 0.0162 |
129 | 129 | 0.496 |
13 | 13 | 0.187 |
130 | 130 | 0.26 |
131 | 131 | 0.344 |
132 | 132 | 0.0696 |
133 | 133 | 0.79 |
134 | 134 | 0.62 |
135 | 135 | 0.253 |
136 | 136 | 0.972 |
137 | 137 | 0.00421 |
138 | 138 | 0.165 |
139 | 139 | 0.0475 |
14 | 14 | 0.414 |
140 | 140 | 0.19 |
141 | 141 | 0.333 |
142 | 142 | 0.729 |
143 | 143 | 0.0328 |
144 | 144 | 0.86 |
145 | 145 | 0.571 |
146 | 146 | 0.441 |
147 | 147 | 0.209 |
148 | 148 | 0.0262 |
149 | 149 | 0.742 |
15 | 15 | 0.157 |
150 | 150 | 0.482 |
151 | 151 | 0.273 |
152 | 152 | 0.0799 |
153 | 153 | 0.358 |
154 | 154 | 0.611 |
155 | 155 | 0.458 |
156 | 156 | 0.826 |
157 | 157 | 0.419 |
158 | 158 | 0.106 |
159 | 159 | 0.829 |
16 | 16 | 0.42 |
160 | 160 | 0.607 |
161 | 161 | 0.624 |
162 | 162 | 0.244 |
163 | 163 | 0.605 |
164 | 164 | 0.129 |
165 | 165 | 0.117 |
166 | 166 | 0.359 |
167 | 167 | 0.293 |
168 | 168 | 0.396 |
169 | 169 | 0.0106 |
17 | 17 | 0.205 |
18 | 18 | 0.25 |
19 | 19 | 0.267 |
2 | 2 | 0.896 |
20 | 20 | 0.441 |
21 | 21 | 0.349 |
22 | 22 | 0.154 |
23 | 23 | 0.0563 |
24 | 24 | 0.189 |
25 | 25 | 0.299 |
26 | 26 | 0.0526 |
27 | 27 | 0.715 |
28 | 28 | 0.44 |
29 | 29 | 0.397 |
3 | 3 | 0.0727 |
30 | 30 | 0.654 |
31 | 31 | 0.685 |
32 | 32 | 0.623 |
33 | 33 | 0.542 |
34 | 34 | 0.325 |
35 | 35 | 0.197 |
36 | 36 | 0.209 |
37 | 37 | 0.0565 |
38 | 38 | 0.311 |
39 | 39 | 0.811 |
4 | 4 | 0.618 |
40 | 40 | 0.18 |
41 | 41 | 0.0136 |
42 | 42 | 0.381 |
43 | 43 | 0.0437 |
44 | 44 | 0.914 |
45 | 45 | 0.661 |
46 | 46 | 0.172 |
47 | 47 | 0.537 |
48 | 48 | 0.466 |
49 | 49 | 0.109 |
5 | 5 | 0.216 |
50 | 50 | 0.955 |
51 | 51 | 0.342 |
52 | 52 | 0.29 |
53 | 53 | 0.225 |
54 | 54 | 0.321 |
55 | 55 | 0.398 |
56 | 56 | 0.628 |
57 | 57 | 0.933 |
58 | 58 | 0.104 |
59 | 59 | 0.108 |
6 | 6 | 0.596 |
60 | 60 | 0.0388 |
61 | 61 | 0.465 |
62 | 62 | 0.0357 |
63 | 63 | 0.493 |
64 | 64 | 0.525 |
65 | 65 | 0.211 |
66 | 66 | 0.348 |
67 | 67 | 0.461 |
68 | 68 | 0.878 |
69 | 69 | 0.838 |
7 | 7 | 0.227 |
70 | 70 | 0.0163 |
71 | 71 | 0.0346 |
72 | 72 | 0.241 |
73 | 73 | 0.0747 |
74 | 74 | 0.161 |
75 | 75 | 0.0558 |
76 | 76 | 0.28 |
77 | 77 | 0.413 |
78 | 78 | 0.0957 |
79 | 79 | 0.195 |
8 | 8 | 0.471 |
80 | 80 | 0.12 |
81 | 81 | 0.417 |
82 | 82 | 0.135 |
83 | 83 | 0.336 |
84 | 84 | 0.493 |
85 | 85 | 0.0127 |
86 | 86 | 0.0292 |
87 | 87 | 0.3 |
88 | 88 | 0.416 |
89 | 89 | 0.413 |
9 | 9 | 0.31 |
90 | 90 | 0.0705 |
91 | 91 | 0.343 |
92 | 92 | 0.188 |
93 | 93 | 0.161 |
94 | 94 | 0.036 |
95 | 95 | 0.376 |
96 | 96 | 0.433 |
97 | 97 | 0.926 |
98 | 98 | 0.167 |
99 | 99 | 0.114 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13491
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)