FF:11876-125C4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004857 | ||
|accession_numbers=CAGE;DRX008154;DRR009026;DRZ000451;DRZ001836 | |accession_numbers=CAGE;DRX008154;DRR009026;DRZ000451;DRZ001836;DRZ011801;DRZ013186 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 9: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.59!3914.96!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.96!914.06!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.84!684.83!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.62!417.03!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.30!197.45!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!2.27!187.24!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!2.24!171.92!ZNF365;;chr2:192015701..192015743,-!p1@STAT4!2.17!199.15!STAT4;;chr14:35873947..35873965,-!p1@NFKBIA!2.10!7265.94!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!2.10!165.11!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.10!124.26!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!2.09!136.17!THAP2;;chr2:70142232..70142251,+!p1@MXD1!2.08!640.01!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.08!120.29!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.07!279.15!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!157.73!NFKBIZ;;chr2:61108695..61108753,+!p1@REL!2.05!721.71!REL;;chr4:103422499..103422632,+!p1@NFKB1!2.03!2056.20!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1155.20!MAFB;;chr10:51572408..51572454,+!p3@NCOA4!1.95!489.09!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.94!476.04!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.94!233.20!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.11!PLEK;;chr10:64576105..64576133,-!p1@EGR2!1.93!167.95!EGR2;;chr10:31288398..31288455,-!p2@ZNF438!1.92!95.89!ZNF438;;chr10:104155480..104155534,+!p2@NFKB2!1.91!491.36!NFKB2;;chr10:104155659..104155676,+!p4@NFKB2!1.91!99.86!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.91!79.43!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.86!91.35!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.85!3423.04!NFKBIZ;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.00!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.84!67.52!SPI1;;chr18:77155922..77155939,+!p1@NFATC1!1.83!176.46!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.83!115.75!ZHX2;;chr21:30671690..30671762,+!p2@BACH1!1.81!208.80!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.81!112.34!NR4A3;;chr10:35484053..35484076,+!p1@CREM!1.80!150.92!CREM;;chr1:38325227..38325246,-!p2@MTF1!1.80!82.84!MTF1;;chr2:61108808..61108821,+!p3@REL!1.77!72.63!REL;;chr16:31885093..31885165,+!p1@ZNF267!1.76!819.30!ZNF267;;chr10:51572339..51572376,+!p4@NCOA4!1.76!124.82!NCOA4;;chr10:31288370..31288393,-!p3@ZNF438!1.75!55.60!ZNF438;;chr1:37940170..37940190,+!p1@ZC3H12A!1.74!628.10!ZC3H12A;;chr10:104154246..104154347,+!p3@NFKB2!1.73!304.69!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.73!128.80!RELA;;chr22:38597987..38598021,+!p2@MAFF!1.72!296.18!MAFF;;chrX:153305787..153305807,-!p3@MECP2!1.72!51.63!MECP2;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.56!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.68!87.38!NR4A3;;chr11:47400045..47400060,-!p6@SPI1!1.67!45.96!SPI1;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.26!PLEK;;chr5:142782823..142782854,-!p3@NR3C1!1.65!61.28!NR3C1;;chr21:30673091..30673135,+!p7@BACH1!1.64!42.55!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.63!533.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.63!500.43!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!202.56!HIVEP1;;chr6:12011943..12012015,+!p2@HIVEP1!1.63!128.80!HIVEP1;;chr7:50344289..50344323,+!p1@IKZF1!1.63!41.99!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!98.73!PRDM1;;chr11:615942..615957,-!p1@IRF7!1.61!361.42!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.61!76.03!NFKBID;;chr1:157108130..157108173,-!p1@ETV3!1.59!261.56!ETV3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.39!PLAGL1;;chr7:17338266..17338282,+!p1@AHR!1.58!379.01!AHR;;chr4:81104895..81104920,+!p2@PRDM8!1.56!52.20!PRDM8;;chr21:40177845..40177863,+!p1@ETS2!1.53!1865.00!ETS2;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!306.96!NFKBIE;;chr6:15246200..15246214,+!p2@JARID2!1.52!86.24!JARID2;;chr4:103423079..103423112,+!p4@NFKB1!1.52!31.77!NFKB1;;chr17:40440225..40440268,+!p3@STAT5A!1.50!38.58!STAT5A;;chr7:115670792..115670797,-!p2@TFEC!1.50!30.64!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.49!208.23!ELF4;;chr14:35872962..35873025,-!p3@NFKBIA!1.49!73.19!NFKBIA;;chr6:12012249..12012266,+!p5@HIVEP1!1.49!51.63!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.49!51.06!GATAD2A;;chr21:36260295..36260310,-!p3@RUNX1!1.49!47.09!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.99!NFKBIA;;chr19:45252008..45252024,+!p2@BCL3!1.47!91.35!BCL3;;chr12:48298765..48298783,-!p2@VDR!1.47!58.44!VDR;;chr19:45971246..45971265,+!p1@FOSB!1.45!482.28!FOSB;;chr11:65430535..65430549,-!p4@RELA!1.45!31.77!RELA;;chr4:103446567..103446592,+!p15@NFKB1!1.45!27.23!NFKB1;;chr8:22550982..22550999,-!p1@EGR3!1.43!70.92!EGR3;;chr2:68615031..68615055,+!p3@PLEK!1.43!26.10!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.42!661.57!ATF3;;chr8:81397820..81397836,+!p2@ZBTB10!1.42!31.21!ZBTB10;;chr6:391743..391759,+!p1@IRF4!1.42!25.53!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.42!25.53!MSC;;chr9:129567282..129567353,+!p1@ZBTB43!1.41!312.63!ZBTB43;;chr20:48599506..48599526,+!p1@SNAI1!1.41!152.06!SNAI1;;chr17:38497662..38497713,+!p4@RARA!1.41!28.37!RARA;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.96!BACH1;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2370.54!CEBPB;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.90!PPARG;;chr3:37217736..37217753,-!p2@LRRFIP2!1.39!95.89!LRRFIP2;;chr2:185463247..185463263,+!p1@ZNF804A!1.39!41.42!ZNF804A;;chr4:103446513..103446530,+!p19@NFKB1!1.39!23.83!NFKB1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.31!SKIL;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.28!ELF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.38!49.36!ZBTB25;;chr7:17338324..17338341,+!p3@AHR!1.37!74.33!AHR;;chr1:221052776..221052799,+!p1@HLX!1.37!40.28!HLX;;chr2:61108771..61108789,+!p4@REL!1.36!32.91!REL;;chr8:72756637..72756664,-!p3@MSC!1.36!24.96!MSC;;chr14:35872414..35872425,-!p7@NFKBIA!1.36!24.40!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.35!28.37!NFKBIA;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.56!SPI1;;chr12:72056706..72056717,+!p10@THAP2!1.35!21.56!THAP2;;chr3:39195037..39195069,-!p2@CSRNP1!1.34!124.82!CSRNP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.34!99.29!HIVEP2;;chr19:45250948..45250998,+!p3@BCL3!1.34!51.63!BCL3;;chr16:69599899..69599919,+!p2@NFAT5!1.33!222.98!NFAT5;;chr12:11802753..11802834,+!p2@ETV6!1.33!98.16!ETV6;;chr17:40440359..40440386,+!p4@STAT5A!1.33!20.43!STAT5A;;chr4:106068026..106068084,+!p1@TET2!1.32!175.32!TET2;;chr1:38325256..38325280,-!p1@MTF1!1.31!117.45!MTF1;;chr4:81104865..81104886,+!p6@PRDM8!1.31!20.99!PRDM8;;chr14:35872542..35872553,-!p10@NFKBIA!1.31!19.29!NFKBIA;;chr10:104155455..104155479,+!p1@NFKB2!1.30!266.10!NFKB2;;chr1:120190786..120190915,-!p1@ZNF697!1.30!135.04!ZNF697;;chr2:97202480..97202499,+!p1@ARID5A!1.29!184.40!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.28!127.66!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.28!26.10!HEY1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.16!LRRFIP1;;chr10:3827371..3827386,-!p2@KLF6!1.27!143.55!KLF6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.27!94.19!LRRFIP1;;chr2:145277882..145277967,-!p3@ZEB2!1.27!30.07!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.27!17.59!EHF;;chr19:45251395..45251432,+!p8@BCL3!1.27!17.59!BCL3;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.65!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.26!32.34!RUNX3;;chr1:221052733..221052749,+!p2@HLX!1.26!22.13!HLX;;chr8:81397846..81397860,+!p3@ZBTB10!1.26!21.56!ZBTB10;;chr18:3449618..3449634,+!p13@TGIF1!1.26!20.99!TGIF1;;chr11:65430586..65430593,-!p5@RELA!1.26!19.29!RELA;;chrX:153305741..153305753,-!p4@MECP2!1.26!17.02!MECP2;;chr7:106809470..106809481,+!p2@HBP1!1.25!23.26!HBP1;;chr17:38497715..38497734,+!p8@RARA!1.24!16.45!RARA;;chr8:72756063..72756125,-!p1@MSC!1.23!32.34!MSC;;chr2:70142189..70142223,+!p2@MXD1!1.21!106.67!MXD1;;chr8:72756267..72756296,-!p4@MSC!1.21!22.13!MSC;;chr3:187454281..187454300,-!p8@BCL6!1.21!15.32!BCL6;;chr19:50432104..50432126,+!p6@ATF5!1.21!15.32!ATF5;;chr19:47616992..47617011,-!p4@ZC3H4!1.20!31.77!ZC3H4;;chr20:48809000..48809053,+!p12@CEBPB!1.20!19.86!CEBPB;;chr6:106535598..106535637,+!p7@PRDM1!1.20!14.75!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!1.19!75.46!NR4A2;;chr12:96588279..96588299,+!p4@ELK3!1.19!67.52!ELK3;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!367.10!ZNFX1;;chr19:19496624..19496660,+!p3@GATAD2A!1.18!64.68!GATAD2A;;chr8:53373491..53373506,-!p4@ST18!1.18!14.18!ST18;;chr21:36260980..36261011,-!p1@RUNX1!1.17!393.77!RUNX1;;chr6:20403916..20403965,+!p3@E2F3!1.17!61.84!E2F3;;chr6:35310395..35310410,+!p2@PPARD!1.17!53.90!PPARD;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.83!FOSL2;;chr12:52445218..52445237,+!p1@NR4A1!1.16!167.95!NR4A1;;chr18:3449527..3449582,+!p6@TGIF1!1.16!25.53!TGIF1;;chr9:3526360..3526421,-!p5@RFX3!1.16!24.96!RFX3;;chr9:102584241..102584261,+!p4@NR4A3!1.16!20.99!NR4A3;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.62!MECP2;;chr2:113999360..113999386,-!p4@PAX8!1.16!13.62!PAX8;;chr12:54778351..54778378,-!p6@ZNF385A!1.16!13.62!ZNF385A;;chr5:131826457..131826514,-!p1@IRF1!1.15!503.84!IRF1;;chr18:3449586..3449617,+!p8@TGIF1!1.15!20.99!TGIF1;;chr4:81104985..81105005,+!p4@PRDM8!1.15!15.89!PRDM8;;chrX:129244430..129244442,-!p5@ELF4!1.15!13.05!ELF4;;chr10:104155680..104155687,+!p6@NFKB2!1.15!13.05!NFKB2;;chr17:40440177..40440190,+!p6@STAT5A!1.15!13.05!STAT5A;;chr7:128577972..128578047,+!p1@IRF5!1.14!20.43!IRF5;;chr8:72756667..72756736,-!p2@MSC!1.14!19.86!MSC;;chr10:114709999..114710031,+!p1@TCF7L2!1.13!291.64!TCF7L2;;chr19:45504688..45504782,+!p1@RELB!1.13!75.46!RELB;;chr12:96588368..96588394,+!p3@ELK3!1.13!33.48!ELK3;;chr11:615570..615721,-!p2@IRF7!1.13!24.96!IRF7;;chr8:123793959..123793977,+!p4@ZHX2!1.13!24.40!ZHX2;;chr14:75988831..75988847,+!p2@BATF!1.13!12.48!BATF;;chr2:185462614..185462619,+!p5@ZNF804A!1.13!12.48!ZNF804A;;chr21:34442540..34442560,+!p2@OLIG1!1.13!12.48!OLIG1;;chr11:65667846..65667868,-!p1@FOSL1!1.12!318.30!FOSL1;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.80!MAFF;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.36!CREB1;;chr18:3449720..3449749,+!p2@TGIF1!1.12!26.10!TGIF1;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.70!TGIF1;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.75!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.12!14.75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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.59!3914.96!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.96!914.06!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.84!684.83!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.62!417.03!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.30!197.45!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!2.27!187.24!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!2.24!171.92!ZNF365;;chr2:192015701..192015743,-!p1@STAT4!2.17!199.15!STAT4;;chr14:35873947..35873965,-!p1@NFKBIA!2.10!7265.94!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!2.10!165.11!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.10!124.26!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!2.09!136.17!THAP2;;chr2:70142232..70142251,+!p1@MXD1!2.08!640.01!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.08!120.29!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.07!279.15!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!157.73!NFKBIZ;;chr2:61108695..61108753,+!p1@REL!2.05!721.71!REL;;chr4:103422499..103422632,+!p1@NFKB1!2.03!2056.20!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1155.20!MAFB;;chr10:51572408..51572454,+!p3@NCOA4!1.95!489.09!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.94!476.04!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.94!233.20!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.11!PLEK;;chr10:64576105..64576133,-!p1@EGR2!1.93!167.95!EGR2;;chr10:31288398..31288455,-!p2@ZNF438!1.92!95.89!ZNF438;;chr10:104155480..104155534,+!p2@NFKB2!1.91!491.36!NFKB2;;chr10:104155659..104155676,+!p4@NFKB2!1.91!99.86!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.91!79.43!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.86!91.35!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.85!3423.04!NFKBIZ;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.00!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.84!67.52!SPI1;;chr18:77155922..77155939,+!p1@NFATC1!1.83!176.46!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.83!115.75!ZHX2;;chr21:30671690..30671762,+!p2@BACH1!1.81!208.80!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.81!112.34!NR4A3;;chr10:35484053..35484076,+!p1@CREM!1.80!150.92!CREM;;chr1:38325227..38325246,-!p2@MTF1!1.80!82.84!MTF1;;chr2:61108808..61108821,+!p3@REL!1.77!72.63!REL;;chr16:31885093..31885165,+!p1@ZNF267!1.76!819.30!ZNF267;;chr10:51572339..51572376,+!p4@NCOA4!1.76!124.82!NCOA4;;chr10:31288370..31288393,-!p3@ZNF438!1.75!55.60!ZNF438;;chr1:37940170..37940190,+!p1@ZC3H12A!1.74!628.10!ZC3H12A;;chr10:104154246..104154347,+!p3@NFKB2!1.73!304.69!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.73!128.80!RELA;;chr22:38597987..38598021,+!p2@MAFF!1.72!296.18!MAFF;;chrX:153305787..153305807,-!p3@MECP2!1.72!51.63!MECP2;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.56!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.68!87.38!NR4A3;;chr11:47400045..47400060,-!p6@SPI1!1.67!45.96!SPI1;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.26!PLEK;;chr5:142782823..142782854,-!p3@NR3C1!1.65!61.28!NR3C1;;chr21:30673091..30673135,+!p7@BACH1!1.64!42.55!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.63!533.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.63!500.43!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!202.56!HIVEP1;;chr6:12011943..12012015,+!p2@HIVEP1!1.63!128.80!HIVEP1;;chr7:50344289..50344323,+!p1@IKZF1!1.63!41.99!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!98.73!PRDM1;;chr11:615942..615957,-!p1@IRF7!1.61!361.42!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.61!76.03!NFKBID;;chr1:157108130..157108173,-!p1@ETV3!1.59!261.56!ETV3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.39!PLAGL1;;chr7:17338266..17338282,+!p1@AHR!1.58!379.01!AHR;;chr4:81104895..81104920,+!p2@PRDM8!1.56!52.20!PRDM8;;chr21:40177845..40177863,+!p1@ETS2!1.53!1865.00!ETS2;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!306.96!NFKBIE;;chr6:15246200..15246214,+!p2@JARID2!1.52!86.24!JARID2;;chr4:103423079..103423112,+!p4@NFKB1!1.52!31.77!NFKB1;;chr17:40440225..40440268,+!p3@STAT5A!1.50!38.58!STAT5A;;chr7:115670792..115670797,-!p2@TFEC!1.50!30.64!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.49!208.23!ELF4;;chr14:35872962..35873025,-!p3@NFKBIA!1.49!73.19!NFKBIA;;chr6:12012249..12012266,+!p5@HIVEP1!1.49!51.63!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.49!51.06!GATAD2A;;chr21:36260295..36260310,-!p3@RUNX1!1.49!47.09!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.99!NFKBIA;;chr19:45252008..45252024,+!p2@BCL3!1.47!91.35!BCL3;;chr12:48298765..48298783,-!p2@VDR!1.47!58.44!VDR;;chr19:45971246..45971265,+!p1@FOSB!1.45!482.28!FOSB;;chr11:65430535..65430549,-!p4@RELA!1.45!31.77!RELA;;chr4:103446567..103446592,+!p15@NFKB1!1.45!27.23!NFKB1;;chr8:22550982..22550999,-!p1@EGR3!1.43!70.92!EGR3;;chr2:68615031..68615055,+!p3@PLEK!1.43!26.10!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.42!661.57!ATF3;;chr8:81397820..81397836,+!p2@ZBTB10!1.42!31.21!ZBTB10;;chr6:391743..391759,+!p1@IRF4!1.42!25.53!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.42!25.53!MSC;;chr9:129567282..129567353,+!p1@ZBTB43!1.41!312.63!ZBTB43;;chr20:48599506..48599526,+!p1@SNAI1!1.41!152.06!SNAI1;;chr17:38497662..38497713,+!p4@RARA!1.41!28.37!RARA;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.96!BACH1;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2370.54!CEBPB;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.90!PPARG;;chr3:37217736..37217753,-!p2@LRRFIP2!1.39!95.89!LRRFIP2;;chr2:185463247..185463263,+!p1@ZNF804A!1.39!41.42!ZNF804A;;chr4:103446513..103446530,+!p19@NFKB1!1.39!23.83!NFKB1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.31!SKIL;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.28!ELF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.38!49.36!ZBTB25;;chr7:17338324..17338341,+!p3@AHR!1.37!74.33!AHR;;chr1:221052776..221052799,+!p1@HLX!1.37!40.28!HLX;;chr2:61108771..61108789,+!p4@REL!1.36!32.91!REL;;chr8:72756637..72756664,-!p3@MSC!1.36!24.96!MSC;;chr14:35872414..35872425,-!p7@NFKBIA!1.36!24.40!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.35!28.37!NFKBIA;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.56!SPI1;;chr12:72056706..72056717,+!p10@THAP2!1.35!21.56!THAP2;;chr3:39195037..39195069,-!p2@CSRNP1!1.34!124.82!CSRNP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.34!99.29!HIVEP2;;chr19:45250948..45250998,+!p3@BCL3!1.34!51.63!BCL3;;chr16:69599899..69599919,+!p2@NFAT5!1.33!222.98!NFAT5;;chr12:11802753..11802834,+!p2@ETV6!1.33!98.16!ETV6;;chr17:40440359..40440386,+!p4@STAT5A!1.33!20.43!STAT5A;;chr4:106068026..106068084,+!p1@TET2!1.32!175.32!TET2;;chr1:38325256..38325280,-!p1@MTF1!1.31!117.45!MTF1;;chr4:81104865..81104886,+!p6@PRDM8!1.31!20.99!PRDM8;;chr14:35872542..35872553,-!p10@NFKBIA!1.31!19.29!NFKBIA;;chr10:104155455..104155479,+!p1@NFKB2!1.30!266.10!NFKB2;;chr1:120190786..120190915,-!p1@ZNF697!1.30!135.04!ZNF697;;chr2:97202480..97202499,+!p1@ARID5A!1.29!184.40!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.28!127.66!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.28!26.10!HEY1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.16!LRRFIP1;;chr10:3827371..3827386,-!p2@KLF6!1.27!143.55!KLF6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.27!94.19!LRRFIP1;;chr2:145277882..145277967,-!p3@ZEB2!1.27!30.07!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.27!17.59!EHF;;chr19:45251395..45251432,+!p8@BCL3!1.27!17.59!BCL3;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.65!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.26!32.34!RUNX3;;chr1:221052733..221052749,+!p2@HLX!1.26!22.13!HLX;;chr8:81397846..81397860,+!p3@ZBTB10!1.26!21.56!ZBTB10;;chr18:3449618..3449634,+!p13@TGIF1!1.26!20.99!TGIF1;;chr11:65430586..65430593,-!p5@RELA!1.26!19.29!RELA;;chrX:153305741..153305753,-!p4@MECP2!1.26!17.02!MECP2;;chr7:106809470..106809481,+!p2@HBP1!1.25!23.26!HBP1;;chr17:38497715..38497734,+!p8@RARA!1.24!16.45!RARA;;chr8:72756063..72756125,-!p1@MSC!1.23!32.34!MSC;;chr2:70142189..70142223,+!p2@MXD1!1.21!106.67!MXD1;;chr8:72756267..72756296,-!p4@MSC!1.21!22.13!MSC;;chr3:187454281..187454300,-!p8@BCL6!1.21!15.32!BCL6;;chr19:50432104..50432126,+!p6@ATF5!1.21!15.32!ATF5;;chr19:47616992..47617011,-!p4@ZC3H4!1.20!31.77!ZC3H4;;chr20:48809000..48809053,+!p12@CEBPB!1.20!19.86!CEBPB;;chr6:106535598..106535637,+!p7@PRDM1!1.20!14.75!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!1.19!75.46!NR4A2;;chr12:96588279..96588299,+!p4@ELK3!1.19!67.52!ELK3;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!367.10!ZNFX1;;chr19:19496624..19496660,+!p3@GATAD2A!1.18!64.68!GATAD2A;;chr8:53373491..53373506,-!p4@ST18!1.18!14.18!ST18;;chr21:36260980..36261011,-!p1@RUNX1!1.17!393.77!RUNX1;;chr6:20403916..20403965,+!p3@E2F3!1.17!61.84!E2F3;;chr6:35310395..35310410,+!p2@PPARD!1.17!53.90!PPARD;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.83!FOSL2;;chr12:52445218..52445237,+!p1@NR4A1!1.16!167.95!NR4A1;;chr18:3449527..3449582,+!p6@TGIF1!1.16!25.53!TGIF1;;chr9:3526360..3526421,-!p5@RFX3!1.16!24.96!RFX3;;chr9:102584241..102584261,+!p4@NR4A3!1.16!20.99!NR4A3;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.62!MECP2;;chr2:113999360..113999386,-!p4@PAX8!1.16!13.62!PAX8;;chr12:54778351..54778378,-!p6@ZNF385A!1.16!13.62!ZNF385A;;chr5:131826457..131826514,-!p1@IRF1!1.15!503.84!IRF1;;chr18:3449586..3449617,+!p8@TGIF1!1.15!20.99!TGIF1;;chr4:81104985..81105005,+!p4@PRDM8!1.15!15.89!PRDM8;;chrX:129244430..129244442,-!p5@ELF4!1.15!13.05!ELF4;;chr10:104155680..104155687,+!p6@NFKB2!1.15!13.05!NFKB2;;chr17:40440177..40440190,+!p6@STAT5A!1.15!13.05!STAT5A;;chr7:128577972..128578047,+!p1@IRF5!1.14!20.43!IRF5;;chr8:72756667..72756736,-!p2@MSC!1.14!19.86!MSC;;chr10:114709999..114710031,+!p1@TCF7L2!1.13!291.64!TCF7L2;;chr19:45504688..45504782,+!p1@RELB!1.13!75.46!RELB;;chr12:96588368..96588394,+!p3@ELK3!1.13!33.48!ELK3;;chr11:615570..615721,-!p2@IRF7!1.13!24.96!IRF7;;chr8:123793959..123793977,+!p4@ZHX2!1.13!24.40!ZHX2;;chr14:75988831..75988847,+!p2@BATF!1.13!12.48!BATF;;chr2:185462614..185462619,+!p5@ZNF804A!1.13!12.48!ZNF804A;;chr21:34442540..34442560,+!p2@OLIG1!1.13!12.48!OLIG1;;chr11:65667846..65667868,-!p1@FOSL1!1.12!318.30!FOSL1;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.80!MAFF;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.36!CREB1;;chr18:3449720..3449749,+!p2@TGIF1!1.12!26.10!TGIF1;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.70!TGIF1;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.75!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.12!14.75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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000633,FF:0011109,FF:11876-125C4 | |fonse_treatment_closure=FF:0000625,FF:0000633,FF:0011109,FF:11876-125C4 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11876-125C4 | |id=FF:11876-125C4 | ||
|is_a=EFO:0002091;;FF:0011109 | |is_a=EFO:0002091;;FF:0011109 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13485 | |library_id=CNhs13485 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13485 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11876 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11876 | |||
|name=CD14+ monocytes - treated with Salmonella, donor2 | |name=CD14+ monocytes - treated with Salmonella, donor2 | ||
|namespace= | |namespace= | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13485,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13485,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=NFE2:5.13003383378;NFE2L2:4.60677030448;BACH2:4.41644240485;FOS_FOS{B,L1}_JUN{B,D}:4.35145032125;NFKB1_REL_RELA:4.31754647726;HLF:4.24338882403;PAX2:4.2344666616;FOSL2:4.14744146143;CEBPA,B_DDIT3:4.14389844293;FOXP3:3.46922304053;NFIL3:3.26233682624;IRF7:3.26216987558;IRF1,2:3.14829941173;SPIB:3.03975458272;PAX8:3.01110557405;ATF4:2.98321573661;SPI1:2.94849236334;ATF5_CREB3:2.9173725348;NANOG{mouse}:2.57351889015;STAT2,4,6:2.51866887149;DMAP1_NCOR{1,2}_SMARC:2.5047271161;ETS1,2:2.50238869847;SREBF1,2:2.30513241659;PDX1:2.21896401105;CREB1:2.17510509106;FOXN1:2.0676003809;JUN:2.03882457034;NFATC1..3:2.02309650926;NFE2L1:1.94110963617;ATF6:1.87192883279;RUNX1..3:1.73169277637;HSF1,2:1.66320765254;ATF2:1.63082088608;PAX3,7:1.51837272107;HMGA1,2:1.45060271619;NR1H4:1.44438751317;STAT5{A,B}:1.38773239782;ALX1:1.34699202614;RXRA_VDR{dimer}:1.2614769455;ALX4:1.17921111619;CDX1,2,4:1.10948781441;HOXA9_MEIS1:1.00967383463;MAFB:0.971013111361;XBP1:0.926097320005;ELF1,2,4:0.907835157541;POU2F1..3:0.843186364973;GLI1..3:0.797906512522;PRDM1:0.746539784472;OCT4_SOX2{dimer}:0.704218038463;HMX1:0.674918350135;TGIF1:0.650516278435;TBP:0.617998056752;STAT1,3:0.5673083719;ZBTB16:0.496347592473;TLX2:0.487097514754;EP300:0.427507640819;SRF:0.367882269062;IKZF1:0.356485879606;TFCP2:0.342037029628;EN1,2:0.308310340986;EGR1..3:0.266804460551;HOX{A5,B5}:0.217757066773;POU5F1:0.160221033724;POU3F1..4:0.138521949528;PPARG:0.116303266985;SMAD1..7,9:0.0356948883926;BPTF:0.00434491393031;RBPJ:-0.000585089833589;FOXL1:-0.153634901508;HIF1A:-0.225559028116;PAX1,9:-0.235278932146;NANOG:-0.251492662416;FOXM1:-0.25633025016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271850967348;GATA4:-0.28288623445;PAX4:-0.302521548225;AHR_ARNT_ARNT2:-0.324120585541;HBP1_HMGB_SSRP1_UBTF:-0.342765621073;NR3C1:-0.397693915546;PITX1..3:-0.400517514734;ESR1:-0.453810774993;FOXO1,3,4:-0.462931910063;IKZF2:-0.49845769323;VSX1,2:-0.57555095961;SOX2:-0.589904492153;MZF1:-0.642654100871;NKX3-1:-0.644820318605;FOX{D1,D2}:-0.70413572708;FOXD3:-0.704707709688;HES1:-0.720068503955;DBP:-0.723963199026;POU6F1:-0.741870296335;MEF2{A,B,C,D}:-0.757974840609;HNF4A_NR2F1,2:-0.812801827663;RORA:-0.831143901083;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.832292023062;MYB:-0.83453940664;PAX6:-0.877781204641;NHLH1,2:-0.89000639397;MED-1{core}:-0.911457266039;MYFfamily:-0.988671262599;TFDP1:-0.992264232868;RFX2..5_RFXANK_RFXAP:-0.995024358495;NFIX:-1.05486616837;CDC5L:-1.05488954419;NR6A1:-1.08481085591;HNF1A:-1.111943451;REST:-1.15963418325;ZNF384:-1.1758835181;FOXA2:-1.17915707351;TAL1_TCF{3,4,12}:-1.18176670545;TBX4,5:-1.21896872076;FOXP1:-1.22333553354;TFAP2B:-1.22428638393;PRRX1,2:-1.25683442768;ZFP161:-1.26478866875;MTE{core}:-1.28079855833;HOX{A4,D4}:-1.31895209329;SOX{8,9,10}:-1.31920020461;CRX:-1.33555779042;ADNP_IRX_SIX_ZHX:-1.36753906322;NKX6-1,2:-1.37091291689;TFAP4:-1.40331881561;ZNF238:-1.42076323961;PATZ1:-1.4538246653;SPZ1:-1.46703002523;GATA6:-1.48882607004;FOX{F1,F2,J1}:-1.49137734189;SOX5:-1.49648431405;BREu{core}:-1.51091230691;RXR{A,B,G}:-1.51214040131;TLX1..3_NFIC{dimer}:-1.54911469911;E2F1..5:-1.5505846453;ZBTB6:-1.55590003854;XCPE1{core}:-1.55857738984;NKX2-2,8:-1.56506577399;TEAD1:-1.57390845747;HOX{A6,A7,B6,B7}:-1.58170279305;TFAP2{A,C}:-1.58412895397;ZNF148:-1.60197594094;RREB1:-1.62743833935;GZF1:-1.68418707511;GTF2I:-1.70630297093;ONECUT1,2:-1.71323778245;NKX3-2:-1.74158436605;CUX2:-1.76820644953;GCM1,2:-1.77230150389;GTF2A1,2:-1.79514821096;MTF1:-1.80444839411;T:-1.82967620202;SP1:-1.9146259035;TEF:-1.93625981271;NKX2-3_NKX2-5:-1.93886536426;ZEB1:-2.01708416733;HIC1:-2.03305967926;MAZ:-2.08199146761;POU1F1:-2.10911024185;ESRRA:-2.11658060868;RFX1:-2.14971220595;AIRE:-2.15532984405;GFI1B:-2.15738694246;TP53:-2.15784197595;ELK1,4_GABP{A,B1}:-2.17344837198;MYBL2:-2.18820688795;KLF4:-2.22917500314;UFEwm:-2.23361581457;SNAI1..3:-2.25754887691;NR5A1,2:-2.36030223122;ZNF423:-2.39975957179;MYOD1:-2.49916315498;FOXQ1:-2.50721564498;bHLH_family:-2.53832183966;NKX2-1,4:-2.59127596563;EBF1:-2.59607719922;NFY{A,B,C}:-2.62265542255;SOX17:-2.62390228031;LMO2:-2.73541527366;EVI1:-2.81460077657;ZIC1..3:-2.87784807097;PBX1:-2.88167779347;TOPORS:-2.88746143105;LHX3,4:-2.89021899222;PAX5:-3.00448264383;GFI1:-3.02426869387;AR:-3.0971012699;NRF1:-3.16812127436;YY1:-3.2044360547;FOX{I1,J2}:-3.24254898982;LEF1_TCF7_TCF7L1,2:-3.71949673252;ZNF143:-3.75203606195;ARID5B:-3.92793781542;HAND1,2:-3.98510134869 | |top_motifs=NFE2:5.13003383378;NFE2L2:4.60677030448;BACH2:4.41644240485;FOS_FOS{B,L1}_JUN{B,D}:4.35145032125;NFKB1_REL_RELA:4.31754647726;HLF:4.24338882403;PAX2:4.2344666616;FOSL2:4.14744146143;CEBPA,B_DDIT3:4.14389844293;FOXP3:3.46922304053;NFIL3:3.26233682624;IRF7:3.26216987558;IRF1,2:3.14829941173;SPIB:3.03975458272;PAX8:3.01110557405;ATF4:2.98321573661;SPI1:2.94849236334;ATF5_CREB3:2.9173725348;NANOG{mouse}:2.57351889015;STAT2,4,6:2.51866887149;DMAP1_NCOR{1,2}_SMARC:2.5047271161;ETS1,2:2.50238869847;SREBF1,2:2.30513241659;PDX1:2.21896401105;CREB1:2.17510509106;FOXN1:2.0676003809;JUN:2.03882457034;NFATC1..3:2.02309650926;NFE2L1:1.94110963617;ATF6:1.87192883279;RUNX1..3:1.73169277637;HSF1,2:1.66320765254;ATF2:1.63082088608;PAX3,7:1.51837272107;HMGA1,2:1.45060271619;NR1H4:1.44438751317;STAT5{A,B}:1.38773239782;ALX1:1.34699202614;RXRA_VDR{dimer}:1.2614769455;ALX4:1.17921111619;CDX1,2,4:1.10948781441;HOXA9_MEIS1:1.00967383463;MAFB:0.971013111361;XBP1:0.926097320005;ELF1,2,4:0.907835157541;POU2F1..3:0.843186364973;GLI1..3:0.797906512522;PRDM1:0.746539784472;OCT4_SOX2{dimer}:0.704218038463;HMX1:0.674918350135;TGIF1:0.650516278435;TBP:0.617998056752;STAT1,3:0.5673083719;ZBTB16:0.496347592473;TLX2:0.487097514754;EP300:0.427507640819;SRF:0.367882269062;IKZF1:0.356485879606;TFCP2:0.342037029628;EN1,2:0.308310340986;EGR1..3:0.266804460551;HOX{A5,B5}:0.217757066773;POU5F1:0.160221033724;POU3F1..4:0.138521949528;PPARG:0.116303266985;SMAD1..7,9:0.0356948883926;BPTF:0.00434491393031;RBPJ:-0.000585089833589;FOXL1:-0.153634901508;HIF1A:-0.225559028116;PAX1,9:-0.235278932146;NANOG:-0.251492662416;FOXM1:-0.25633025016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271850967348;GATA4:-0.28288623445;PAX4:-0.302521548225;AHR_ARNT_ARNT2:-0.324120585541;HBP1_HMGB_SSRP1_UBTF:-0.342765621073;NR3C1:-0.397693915546;PITX1..3:-0.400517514734;ESR1:-0.453810774993;FOXO1,3,4:-0.462931910063;IKZF2:-0.49845769323;VSX1,2:-0.57555095961;SOX2:-0.589904492153;MZF1:-0.642654100871;NKX3-1:-0.644820318605;FOX{D1,D2}:-0.70413572708;FOXD3:-0.704707709688;HES1:-0.720068503955;DBP:-0.723963199026;POU6F1:-0.741870296335;MEF2{A,B,C,D}:-0.757974840609;HNF4A_NR2F1,2:-0.812801827663;RORA:-0.831143901083;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.832292023062;MYB:-0.83453940664;PAX6:-0.877781204641;NHLH1,2:-0.89000639397;MED-1{core}:-0.911457266039;MYFfamily:-0.988671262599;TFDP1:-0.992264232868;RFX2..5_RFXANK_RFXAP:-0.995024358495;NFIX:-1.05486616837;CDC5L:-1.05488954419;NR6A1:-1.08481085591;HNF1A:-1.111943451;REST:-1.15963418325;ZNF384:-1.1758835181;FOXA2:-1.17915707351;TAL1_TCF{3,4,12}:-1.18176670545;TBX4,5:-1.21896872076;FOXP1:-1.22333553354;TFAP2B:-1.22428638393;PRRX1,2:-1.25683442768;ZFP161:-1.26478866875;MTE{core}:-1.28079855833;HOX{A4,D4}:-1.31895209329;SOX{8,9,10}:-1.31920020461;CRX:-1.33555779042;ADNP_IRX_SIX_ZHX:-1.36753906322;NKX6-1,2:-1.37091291689;TFAP4:-1.40331881561;ZNF238:-1.42076323961;PATZ1:-1.4538246653;SPZ1:-1.46703002523;GATA6:-1.48882607004;FOX{F1,F2,J1}:-1.49137734189;SOX5:-1.49648431405;BREu{core}:-1.51091230691;RXR{A,B,G}:-1.51214040131;TLX1..3_NFIC{dimer}:-1.54911469911;E2F1..5:-1.5505846453;ZBTB6:-1.55590003854;XCPE1{core}:-1.55857738984;NKX2-2,8:-1.56506577399;TEAD1:-1.57390845747;HOX{A6,A7,B6,B7}:-1.58170279305;TFAP2{A,C}:-1.58412895397;ZNF148:-1.60197594094;RREB1:-1.62743833935;GZF1:-1.68418707511;GTF2I:-1.70630297093;ONECUT1,2:-1.71323778245;NKX3-2:-1.74158436605;CUX2:-1.76820644953;GCM1,2:-1.77230150389;GTF2A1,2:-1.79514821096;MTF1:-1.80444839411;T:-1.82967620202;SP1:-1.9146259035;TEF:-1.93625981271;NKX2-3_NKX2-5:-1.93886536426;ZEB1:-2.01708416733;HIC1:-2.03305967926;MAZ:-2.08199146761;POU1F1:-2.10911024185;ESRRA:-2.11658060868;RFX1:-2.14971220595;AIRE:-2.15532984405;GFI1B:-2.15738694246;TP53:-2.15784197595;ELK1,4_GABP{A,B1}:-2.17344837198;MYBL2:-2.18820688795;KLF4:-2.22917500314;UFEwm:-2.23361581457;SNAI1..3:-2.25754887691;NR5A1,2:-2.36030223122;ZNF423:-2.39975957179;MYOD1:-2.49916315498;FOXQ1:-2.50721564498;bHLH_family:-2.53832183966;NKX2-1,4:-2.59127596563;EBF1:-2.59607719922;NFY{A,B,C}:-2.62265542255;SOX17:-2.62390228031;LMO2:-2.73541527366;EVI1:-2.81460077657;ZIC1..3:-2.87784807097;PBX1:-2.88167779347;TOPORS:-2.88746143105;LHX3,4:-2.89021899222;PAX5:-3.00448264383;GFI1:-3.02426869387;AR:-3.0971012699;NRF1:-3.16812127436;YY1:-3.2044360547;FOX{I1,J2}:-3.24254898982;LEF1_TCF7_TCF7L1,2:-3.71949673252;ZNF143:-3.75203606195;ARID5B:-3.92793781542;HAND1,2:-3.98510134869 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11876-125C4;search_select_hide=table117:FF:11876-125C4 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with Salmonella, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13485 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13485
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13485
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.112 |
10 | 10 | 0.0294 |
100 | 100 | 0.767 |
101 | 101 | 0.903 |
102 | 102 | 0.893 |
103 | 103 | 0.291 |
104 | 104 | 0.572 |
105 | 105 | 0.14 |
106 | 106 | 1.08982e-4 |
107 | 107 | 0.136 |
108 | 108 | 0.754 |
109 | 109 | 0.371 |
11 | 11 | 0.175 |
110 | 110 | 0.214 |
111 | 111 | 0.106 |
112 | 112 | 0.428 |
113 | 113 | 0.48 |
114 | 114 | 0.0304 |
115 | 115 | 0.242 |
116 | 116 | 0.962 |
117 | 117 | 0.0704 |
118 | 118 | 0.22 |
119 | 119 | 0.152 |
12 | 12 | 0.288 |
120 | 120 | 0.986 |
121 | 121 | 0.774 |
122 | 122 | 0.625 |
123 | 123 | 0.513 |
124 | 124 | 0.577 |
125 | 125 | 0.215 |
126 | 126 | 0.235 |
127 | 127 | 0.573 |
128 | 128 | 0.0475 |
129 | 129 | 0.459 |
13 | 13 | 0.139 |
130 | 130 | 0.245 |
131 | 131 | 0.793 |
132 | 132 | 0.109 |
133 | 133 | 0.782 |
134 | 134 | 0.542 |
135 | 135 | 0.724 |
136 | 136 | 0.801 |
137 | 137 | 0.0269 |
138 | 138 | 0.387 |
139 | 139 | 0.129 |
14 | 14 | 0.563 |
140 | 140 | 0.31 |
141 | 141 | 0.24 |
142 | 142 | 0.167 |
143 | 143 | 0.026 |
144 | 144 | 0.487 |
145 | 145 | 0.435 |
146 | 146 | 0.631 |
147 | 147 | 0.743 |
148 | 148 | 0.00489 |
149 | 149 | 0.793 |
15 | 15 | 0.183 |
150 | 150 | 0.282 |
151 | 151 | 0.574 |
152 | 152 | 0.223 |
153 | 153 | 0.645 |
154 | 154 | 0.615 |
155 | 155 | 0.99 |
156 | 156 | 0.862 |
157 | 157 | 0.443 |
158 | 158 | 0.0309 |
159 | 159 | 0.245 |
16 | 16 | 0.366 |
160 | 160 | 0.387 |
161 | 161 | 0.474 |
162 | 162 | 0.172 |
163 | 163 | 0.118 |
164 | 164 | 0.107 |
165 | 165 | 0.17 |
166 | 166 | 0.874 |
167 | 167 | 0.322 |
168 | 168 | 0.119 |
169 | 169 | 0.0253 |
17 | 17 | 0.202 |
18 | 18 | 0.0895 |
19 | 19 | 0.593 |
2 | 2 | 0.6 |
20 | 20 | 0.205 |
21 | 21 | 0.66 |
22 | 22 | 0.32 |
23 | 23 | 0.0296 |
24 | 24 | 0.387 |
25 | 25 | 0.532 |
26 | 26 | 0.0621 |
27 | 27 | 0.567 |
28 | 28 | 0.327 |
29 | 29 | 0.355 |
3 | 3 | 0.131 |
30 | 30 | 0.464 |
31 | 31 | 0.773 |
32 | 32 | 0.543 |
33 | 33 | 0.246 |
34 | 34 | 0.663 |
35 | 35 | 0.13 |
36 | 36 | 0.0945 |
37 | 37 | 0.067 |
38 | 38 | 0.385 |
39 | 39 | 0.778 |
4 | 4 | 0.943 |
40 | 40 | 0.234 |
41 | 41 | 0.0165 |
42 | 42 | 0.341 |
43 | 43 | 0.0182 |
44 | 44 | 0.605 |
45 | 45 | 0.606 |
46 | 46 | 0.174 |
47 | 47 | 0.67 |
48 | 48 | 0.55 |
49 | 49 | 0.132 |
5 | 5 | 0.379 |
50 | 50 | 0.957 |
51 | 51 | 0.535 |
52 | 52 | 0.295 |
53 | 53 | 0.575 |
54 | 54 | 0.446 |
55 | 55 | 0.67 |
56 | 56 | 0.715 |
57 | 57 | 0.82 |
58 | 58 | 0.173 |
59 | 59 | 0.183 |
6 | 6 | 0.805 |
60 | 60 | 0.0395 |
61 | 61 | 0.653 |
62 | 62 | 0.085 |
63 | 63 | 0.535 |
64 | 64 | 0.538 |
65 | 65 | 0.195 |
66 | 66 | 0.347 |
67 | 67 | 0.501 |
68 | 68 | 0.683 |
69 | 69 | 0.318 |
7 | 7 | 0.299 |
70 | 70 | 0.0433 |
71 | 71 | 0.0322 |
72 | 72 | 0.244 |
73 | 73 | 0.179 |
74 | 74 | 0.0341 |
75 | 75 | 0.184 |
76 | 76 | 0.157 |
77 | 77 | 0.405 |
78 | 78 | 0.128 |
79 | 79 | 0.926 |
8 | 8 | 0.402 |
80 | 80 | 0.218 |
81 | 81 | 0.347 |
82 | 82 | 0.231 |
83 | 83 | 0.0263 |
84 | 84 | 0.0432 |
85 | 85 | 0.0233 |
86 | 86 | 0.0312 |
87 | 87 | 0.472 |
88 | 88 | 0.741 |
89 | 89 | 0.146 |
9 | 9 | 0.292 |
90 | 90 | 0.0988 |
91 | 91 | 0.387 |
92 | 92 | 0.247 |
93 | 93 | 0.786 |
94 | 94 | 0.108 |
95 | 95 | 0.652 |
96 | 96 | 0.349 |
97 | 97 | 0.589 |
98 | 98 | 0.173 |
99 | 99 | 0.0659 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13485
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011109 human CD14-positive monocytes - treated with Salmonella sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000633 (Salmonella treatment sample)
0011109 (human CD14-positive monocytes - treated with Salmonella sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)