FF:11866-125B3: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with Salmonella, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13471
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-7
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005560

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13471		CAGE		DRX008153		DRR009025

Accession ID Hg19

Library id		BAM		CTSS
CNhs13471		DRZ000450		DRZ001835

Accession ID Hg38

Library id		BAM		CTSS
CNhs13471		DRZ011800		DRZ013185

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.885
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.067
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.917
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.5
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.111
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0516
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.389
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.794
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.808
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.22
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.652
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.376
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	1.08
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.457
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.464
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.39
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.729
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.438
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.438
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.278
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.462
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0345
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	1.07
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.828
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.482
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.767
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.438
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.657
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	1.012
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.617
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.272
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.438
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	1
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.199
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.333
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.732
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.919
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.335
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.694
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.156
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.111
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.561
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.155
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.361
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.521
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.652
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.335
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.199
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.199
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.199
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.199
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13471

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.91395e-6
MA0003.1	MA0003.1	0.612
MA0004.1	MA0004.1	0.704
MA0006.1	MA0006.1	0.882
MA0007.1	MA0007.1	0.818
MA0009.1	MA0009.1	0.262
MA0014.1	MA0014.1	0.973
MA0017.1	MA0017.1	0.153
MA0018.2	MA0018.2	0.286
MA0019.1	MA0019.1	0.349
MA0024.1	MA0024.1	0.00248
MA0025.1	MA0025.1	0.0183
MA0027.1	MA0027.1	0.936
MA0028.1	MA0028.1	0.095
MA0029.1	MA0029.1	0.112
MA0030.1	MA0030.1	0.0567
MA0031.1	MA0031.1	0.229
MA0035.2	MA0035.2	0.188
MA0038.1	MA0038.1	0.189
MA0039.2	MA0039.2	0.501
MA0040.1	MA0040.1	0.681
MA0041.1	MA0041.1	0.882
MA0042.1	MA0042.1	0.575
MA0043.1	MA0043.1	7.22744e-7
MA0046.1	MA0046.1	0.0082
MA0047.2	MA0047.2	0.217
MA0048.1	MA0048.1	0.561
MA0050.1	MA0050.1	6.47694e-17
MA0051.1	MA0051.1	1.16649e-11
MA0052.1	MA0052.1	0.713
MA0055.1	MA0055.1	0.471
MA0057.1	MA0057.1	0.437
MA0058.1	MA0058.1	0.529
MA0059.1	MA0059.1	0.3
MA0060.1	MA0060.1	4.51088e-12
MA0061.1	MA0061.1	5.77749e-15
MA0062.2	MA0062.2	0.837
MA0065.2	MA0065.2	0.0211
MA0066.1	MA0066.1	0.0344
MA0067.1	MA0067.1	3.58724e-4
MA0068.1	MA0068.1	0.121
MA0069.1	MA0069.1	0.905
MA0070.1	MA0070.1	0.0174
MA0071.1	MA0071.1	0.411
MA0072.1	MA0072.1	0.853
MA0073.1	MA0073.1	0.564
MA0074.1	MA0074.1	0.111
MA0076.1	MA0076.1	0.0841
MA0077.1	MA0077.1	0.321
MA0078.1	MA0078.1	0.578
MA0079.2	MA0079.2	0.17
MA0080.2	MA0080.2	1.33287e-11
MA0081.1	MA0081.1	6.94572e-4
MA0083.1	MA0083.1	0.665
MA0084.1	MA0084.1	0.563
MA0087.1	MA0087.1	0.966
MA0088.1	MA0088.1	0.401
MA0090.1	MA0090.1	0.466
MA0091.1	MA0091.1	0.651
MA0092.1	MA0092.1	0.304
MA0093.1	MA0093.1	0.781
MA0099.2	MA0099.2	2.90136e-41
MA0100.1	MA0100.1	0.675
MA0101.1	MA0101.1	3.21509e-18
MA0102.2	MA0102.2	7.2988e-10
MA0103.1	MA0103.1	0.121
MA0104.2	MA0104.2	0.771
MA0105.1	MA0105.1	3.13504e-18
MA0106.1	MA0106.1	0.992
MA0107.1	MA0107.1	2.86424e-23
MA0108.2	MA0108.2	0.0694
MA0111.1	MA0111.1	0.45
MA0112.2	MA0112.2	1.77291e-4
MA0113.1	MA0113.1	0.704
MA0114.1	MA0114.1	0.141
MA0115.1	MA0115.1	0.952
MA0116.1	MA0116.1	2.76495e-4
MA0117.1	MA0117.1	0.133
MA0119.1	MA0119.1	0.1
MA0122.1	MA0122.1	0.777
MA0124.1	MA0124.1	0.571
MA0125.1	MA0125.1	0.221
MA0131.1	MA0131.1	0.422
MA0135.1	MA0135.1	0.276
MA0136.1	MA0136.1	4.73401e-11
MA0137.2	MA0137.2	0.225
MA0138.2	MA0138.2	0.622
MA0139.1	MA0139.1	0.801
MA0140.1	MA0140.1	0.19
MA0141.1	MA0141.1	0.111
MA0142.1	MA0142.1	0.698
MA0143.1	MA0143.1	0.95
MA0144.1	MA0144.1	0.0929
MA0145.1	MA0145.1	0.47
MA0146.1	MA0146.1	0.317
MA0147.1	MA0147.1	0.788
MA0148.1	MA0148.1	0.516
MA0149.1	MA0149.1	0.195
MA0150.1	MA0150.1	4.31463e-19
MA0152.1	MA0152.1	0.811
MA0153.1	MA0153.1	8.61476e-4
MA0154.1	MA0154.1	5.61635e-4
MA0155.1	MA0155.1	0.92
MA0156.1	MA0156.1	8.44835e-7
MA0157.1	MA0157.1	0.843
MA0159.1	MA0159.1	0.0278
MA0160.1	MA0160.1	0.131
MA0162.1	MA0162.1	0.682
MA0163.1	MA0163.1	2.57327e-9
MA0164.1	MA0164.1	0.465
MA0258.1	MA0258.1	0.0128
MA0259.1	MA0259.1	0.532

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13471

Novel motif	Logo	P-value
1	1	0.0839
10	10	0.0237
100	100	0.998
101	101	0.963
102	102	0.972
103	103	0.198
104	104	0.541
105	105	0.198
106	106	4.01834e-4
107	107	0.139
108	108	0.813
109	109	0.288
11	11	0.12
110	110	0.171
111	111	0.0367
112	112	0.352
113	113	0.429
114	114	0.0149
115	115	0.246
116	116	0.825
117	117	0.0674
118	118	0.165
119	119	0.122
12	12	0.275
120	120	0.963
121	121	0.82
122	122	0.892
123	123	0.386
124	124	0.729
125	125	0.152
126	126	0.213
127	127	0.497
128	128	0.0483
129	129	0.32
13	13	0.102
130	130	0.16
131	131	0.881
132	132	0.148
133	133	0.512
134	134	0.335
135	135	0.734
136	136	0.996
137	137	0.0426
138	138	0.316
139	139	0.0633
14	14	0.495
140	140	0.352
141	141	0.233
142	142	0.221
143	143	0.0253
144	144	0.537
145	145	0.282
146	146	0.722
147	147	0.958
148	148	0.00621
149	149	0.766
15	15	0.153
150	150	0.319
151	151	0.482
152	152	0.307
153	153	0.723
154	154	0.744
155	155	0.787
156	156	0.806
157	157	0.479
158	158	0.0487
159	159	0.401
16	16	0.286
160	160	0.346
161	161	0.413
162	162	0.339
163	163	0.0683
164	164	0.084
165	165	0.166
166	166	0.925
167	167	0.223
168	168	0.109
169	169	0.0116
17	17	0.172
18	18	0.0846
19	19	0.415
2	2	0.58
20	20	0.16
21	21	0.705
22	22	0.313
23	23	0.0265
24	24	0.442
25	25	0.546
26	26	0.0447
27	27	0.603
28	28	0.36
29	29	0.237
3	3	0.0817
30	30	0.354
31	31	0.69
32	32	0.82
33	33	0.207
34	34	0.664
35	35	0.1
36	36	0.073
37	37	0.0699
38	38	0.38
39	39	0.72
4	4	0.943
40	40	0.25
41	41	0.0259
42	42	0.264
43	43	0.0214
44	44	0.697
45	45	0.742
46	46	0.134
47	47	0.432
48	48	0.413
49	49	0.124
5	5	0.314
50	50	0.986
51	51	0.468
52	52	0.299
53	53	0.575
54	54	0.397
55	55	0.519
56	56	0.622
57	57	0.719
58	58	0.181
59	59	0.161
6	6	0.688
60	60	0.0342
61	61	0.738
62	62	0.0859
63	63	0.435
64	64	0.495
65	65	0.188
66	66	0.199
67	67	0.452
68	68	0.548
69	69	0.247
7	7	0.266
70	70	0.0315
71	71	0.0281
72	72	0.244
73	73	0.207
74	74	0.0339
75	75	0.155
76	76	0.146
77	77	0.412
78	78	0.103
79	79	0.63
8	8	0.297
80	80	0.282
81	81	0.305
82	82	0.114
83	83	0.0783
84	84	0.064
85	85	0.0188
86	86	0.0819
87	87	0.667
88	88	0.79
89	89	0.166
9	9	0.299
90	90	0.0731
91	91	0.318
92	92	0.227
93	93	0.66
94	94	0.0746
95	95	0.405
96	96	0.343
97	97	0.529
98	98	0.108
99	99	0.114

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13471

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011109 human CD14-positive monocytes - treated with Salmonella sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000633 (Salmonella treatment sample)
0011109 (human CD14-positive monocytes - treated with Salmonella sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005560
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008153;DRR009025;DRZ000450;DRZ001835;DRZ011800;DRZ013185
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000633,FF:0011109
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.55!3579.44!PLEK;;chr11:47400078..47400106,-!p1@SPI1!3.02!1040.40!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.79!611.47!TFEC;;chr11:47400062..47400077,-!p2@SPI1!2.38!236.23!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.31!201.99!IRF8;;chr12:72056800..72056834,+!p1@THAP2!2.29!259.45!THAP2;;chr14:35872453..35872485,-!p2@NFKBIA!2.27!439.67!NFKBIA;;chr2:192015701..192015743,-!p1@STAT4!2.27!250.74!STAT4;;chr12:54778471..54778528,-!p1@ZNF385A!2.27!186.02!ZNF385A;;chr11:47399947..47399961,-!p3@SPI1!2.26!180.80!SPI1;;chr3:101546827..101546847,+!p2@NFKBIZ!2.25!246.68!NFKBIZ;;chr20:39317868..39317884,-!p1@MAFB!2.22!1827.45!MAFB;;chr2:70142232..70142251,+!p1@MXD1!2.19!822.45!MXD1;;chr12:72056749..72056767,+!p6@THAP2!2.16!159.91!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!2.12!7673.71!NFKBIA;;chr11:47400032..47400043,-!p5@SPI1!2.03!106.22!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!2.01!559.81!NCOA4;;chr12:72056773..72056796,+!p3@THAP2!2.01!130.88!THAP2;;chr10:104155659..104155676,+!p4@NFKB2!2.00!121.31!NFKB2;;chr11:47399996..47400014,-!p4@SPI1!1.99!96.93!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.99!96.06!OLIG1;;chr10:104155480..104155534,+!p2@NFKB2!1.97!562.14!NFKB2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.91!3864.72!NFKBIZ;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1577.58!NFKB1;;chr2:145275162..145275202,-!p2@ZEB2!1.91!449.53!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.90!901.39!ZC3H12A;;chr2:68592394..68592405,+!p2@PLEK!1.90!77.78!PLEK;;chr1:38325227..38325246,-!p2@MTF1!1.89!102.15!MTF1;;chr2:61108695..61108753,+!p1@REL!1.85!450.40!REL;;chr2:145277640..145277771,-!p1@ZEB2!1.84!849.73!ZEB2;;chrX:153305787..153305807,-!p3@MECP2!1.84!68.20!MECP2;;chr4:81104895..81104920,+!p2@PRDM8!1.81!93.45!PRDM8;;chr19:50432132..50432217,+!p2@ATF5!1.81!75.74!ATF5;;chr11:615942..615957,-!p1@IRF7!1.80!558.07!IRF7;;chr10:51572339..51572376,+!p4@NCOA4!1.78!127.98!NCOA4;;chr10:104154246..104154347,+!p3@NFKB2!1.77!334.61!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.77!143.94!RELA;;chr21:30673091..30673135,+!p7@BACH1!1.77!57.75!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.76!150.62!NFATC1;;chr10:35484053..35484076,+!p1@CREM!1.76!137.85!CREM;;chr8:123793988..123794016,+!p1@ZHX2!1.75!94.32!ZHX2;;chr10:31288398..31288455,-!p2@ZNF438!1.75!64.14!ZNF438;;chr9:102584262..102584276,+!p1@NR4A3!1.73!115.21!NR4A3;;chr7:50344289..50344323,+!p1@IKZF1!1.73!52.82!IKZF1;;chr1:157108130..157108173,-!p1@ETV3!1.72!350.57!ETV3;;chr6:126240380..126240430,+!p2@NCOA7!1.72!128.56!NCOA7;;chr9:102584159..102584174,+!p2@NR4A3!1.71!89.38!NR4A3;;chr16:31885093..31885165,+!p1@ZNF267!1.70!703.47!ZNF267;;chr11:47400045..47400060,-!p6@SPI1!1.69!47.59!SPI1;;chr19:45252008..45252024,+!p2@BCL3!1.68!147.43!BCL3;;chr14:35872494..35872511,-!p5@NFKBIA!1.68!62.10!NFKBIA;;chr21:30671690..30671762,+!p2@BACH1!1.66!146.27!BACH1;;chr9:102584128..102584144,+!p3@NR4A3!1.66!83.00!NR4A3;;chr22:38597987..38598021,+!p2@MAFF!1.65!255.96!MAFF;;chr6:12012170..12012245,+!p1@HIVEP1!1.65!208.66!HIVEP1;;chr10:64018918..64018936,+!p2@ZNF365!1.64!42.95!ZNF365;;chr10:31288370..31288393,-!p3@ZNF438!1.64!42.37!ZNF438;;chr14:35872962..35873025,-!p3@NFKBIA!1.63!102.44!NFKBIA;;chr21:36260295..36260310,-!p3@RUNX1!1.62!64.72!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.62!57.17!NFKBIA;;chr19:45971246..45971265,+!p1@FOSB!1.61!698.82!FOSB;;chr6:44233252..44233296,-!p1@NFKBIE!1.60!362.76!NFKBIE;;chr6:106534192..106534224,+!p1@PRDM1!1.59!103.60!PRDM1;;chr17:40440225..40440268,+!p3@STAT5A!1.59!48.17!STAT5A;;chr21:30671235..30671253,+!p1@BACH1!1.57!440.83!BACH1;;chr11:65430535..65430549,-!p4@RELA!1.56!40.92!RELA;;chr21:30672433..30672464,+!p6@BACH1!1.56!35.70!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.55!235.65!ELF4;;chr6:15246200..15246214,+!p2@JARID2!1.55!93.45!JARID2;;chr14:35872414..35872425,-!p7@NFKBIA!1.55!38.31!NFKBIA;;chr2:145277882..145277967,-!p3@ZEB2!1.54!57.17!ZEB2;;chr2:231090471..231090504,+!p2@SP140!1.54!33.37!SP140;;chr8:72755203..72755239,-!p10@MSC!1.53!32.79!MSC;;chr11:47399920..47399931,-!p7@SPI1!1.53!32.50!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.52!196.47!ELF1;;chr5:142782823..142782854,-!p3@NR3C1!1.52!45.56!NR3C1;;chr3:39195037..39195069,-!p2@CSRNP1!1.51!187.18!CSRNP1;;chr6:144385698..144385742,-!p2@PLAGL1!1.51!37.73!PLAGL1;;chr14:35872542..35872553,-!p10@NFKBIA!1.51!31.05!NFKBIA;;chr2:70167296..70167306,+!p3@MXD1!1.50!45.85!MXD1;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.76!NFKB1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.50!30.47!ZBED1;;chr2:28618532..28618610,+!p4@FOSL2!1.49!49.92!FOSL2;;chr7:115670792..115670797,-!p2@TFEC!1.49!29.89!TFEC;;chr17:40440359..40440386,+!p4@STAT5A!1.48!29.31!STAT5A;;chr19:36391434..36391450,-!p1@NFKBID!1.47!54.85!NFKBID;;chr12:54778351..54778378,-!p6@ZNF385A!1.47!28.73!ZNF385A;;chr7:17338266..17338282,+!p1@AHR!1.46!288.76!AHR;;chr1:221052776..221052799,+!p1@HLX!1.46!49.63!HLX;;chr4:81105027..81105039,+!p3@PRDM8!1.45!31.63!PRDM8;;chr2:68615063..68615089,+!p4@PLEK!1.45!26.99!PLEK;;chr9:129567282..129567353,+!p1@ZBTB43!1.44!333.74!ZBTB43;;chr6:12011943..12012015,+!p2@HIVEP1!1.44!83.87!HIVEP1;;chr10:64576105..64576133,-!p1@EGR2!1.44!53.98!EGR2;;chr17:38497662..38497713,+!p4@RARA!1.44!30.47!RARA;;chr4:81104985..81105005,+!p4@PRDM8!1.43!31.34!PRDM8;;chr10:104155455..104155479,+!p1@NFKB2!1.42!356.67!NFKB2;;chr11:615570..615721,-!p2@IRF7!1.42!48.76!IRF7;;chr21:40177845..40177863,+!p1@ETS2!1.41!1413.90!ETS2;;chr6:12012249..12012266,+!p5@HIVEP1!1.40!41.50!HIVEP1;;chrX:153305962..153305995,-!p5@MECP2!1.40!24.38!MECP2;;chr2:145275228..145275241,-!p11@ZEB2!1.39!28.15!ZEB2;;chr2:231090433..231090469,+!p1@SP140!1.39!23.80!SP140;;chr12:11802753..11802834,+!p2@ETV6!1.38!109.41!ETV6;;chr12:72056706..72056717,+!p10@THAP2!1.38!23.22!THAP2;;chr5:131826457..131826514,-!p1@IRF1!1.37!849.73!IRF1;;chr19:45250948..45250998,+!p3@BCL3!1.37!55.72!BCL3;;chr6:126240442..126240459,+!p4@NCOA7!1.37!28.44!NCOA7;;chr20:48807351..48807384,+!p1@CEBPB!1.36!2136.52!CEBPB;;chr7:17338324..17338341,+!p3@AHR!1.36!72.55!AHR;;chr4:81104865..81104886,+!p6@PRDM8!1.36!23.51!PRDM8;;chr8:72755345..72755349,-!p14@MSC!1.36!22.06!MSC;;chr2:192015677..192015691,-!p3@STAT4!1.36!21.77!STAT4;;chr19:50432104..50432126,+!p6@ATF5!1.36!21.77!ATF5;;chr2:97202480..97202499,+!p1@ARID5A!1.35!209.53!ARID5A;;chr20:48599506..48599526,+!p1@SNAI1!1.35!133.21!SNAI1;;chr2:185462614..185462619,+!p5@ZNF804A!1.35!21.48!ZNF804A;;chr10:104155680..104155687,+!p6@NFKB2!1.35!21.19!NFKB2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.19!EHF;;chr3:170075436..170075520,+!p1@SKIL!1.34!436.47!SKIL;;chr8:22550982..22550999,-!p1@EGR3!1.34!58.04!EGR3;;chr3:37217736..37217753,-!p2@LRRFIP2!1.33!83.58!LRRFIP2;;chr21:40177892..40177903,+!p2@ETS2!1.32!78.07!ETS2;;chr18:3449586..3449617,+!p8@TGIF1!1.32!31.34!TGIF1;;chrX:153305741..153305753,-!p4@MECP2!1.32!19.73!MECP2;;chr1:212782094..212782109,+!p1@ATF3!1.31!515.99!ATF3;;chr4:106068026..106068084,+!p1@TET2!1.31!171.51!TET2;;chr6:106534230..106534254,+!p2@PRDM1!1.30!46.72!PRDM1;;chr8:81397820..81397836,+!p2@ZBTB10!1.30!23.51!ZBTB10;;chr19:45251395..45251432,+!p8@BCL3!1.30!18.86!BCL3;;chr2:231084639..231084654,-!p2@SP110!1.29!30.76!SP110;;chr12:48298765..48298783,-!p2@VDR!1.28!37.44!VDR;;chr2:61108771..61108789,+!p4@REL!1.28!27.28!REL;;chr8:72756267..72756296,-!p4@MSC!1.28!26.41!MSC;;chr2:61108808..61108821,+!p3@REL!1.28!22.64!REL;;chr8:72756637..72756664,-!p3@MSC!1.27!20.02!MSC;;chr10:3827371..3827386,-!p2@KLF6!1.26!140.46!KLF6;;chr14:62162285..62162296,+!p3@HIF1A!1.26!88.80!HIF1A;;chr11:65430586..65430593,-!p5@RELA!1.26!19.15!RELA;;chr8:123875520..123875536,+!p7@ZHX2!1.26!17.12!ZHX2;;chr18:3449720..3449749,+!p2@TGIF1!1.25!35.12!TGIF1;;chr6:126240463..126240489,+!p6@NCOA7!1.24!18.57!NCOA7;;chr2:191885737..191885750,-!p4@STAT1!1.24!16.54!STAT1;;chr1:120190786..120190915,-!p1@ZNF697!1.23!113.47!ZNF697;;chr19:45504688..45504782,+!p1@RELB!1.23!96.35!RELB;;chr2:145147310..145147339,-!p20@ZEB2!1.23!15.96!ZEB2;;chr4:103498623..103498650,+!p9@NFKB1!1.23!15.96!NFKB1;;chr1:158979872..158979898,+!p3@IFI16!1.22!47.59!IFI16;;chr3:12329397..12329433,+!p2@PPARG!1.22!35.12!PPARG;;chr18:3449527..3449582,+!p6@TGIF1!1.22!29.60!TGIF1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.22!15.67!LRRFIP1;;chr3:39195075..39195088,-!p1@CSRNP1!1.21!93.45!CSRNP1;;chr9:102584241..102584261,+!p4@NR4A3!1.21!23.80!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.21!19.44!CSRNP1;;chrX:24167086..24167111,+!p4@ZFX!1.21!15.38!ZFX;;chr1:25256756..25256774,-!p1@RUNX3!1.20!27.57!RUNX3;;chr4:81104958..81104981,+!p5@PRDM8!1.20!17.70!PRDM8;;chr2:145277589..145277612,-!p12@ZEB2!1.20!14.80!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.18!76.03!LRRFIP1;;chr10:35416142..35416169,+!p3@CREM!1.18!36.86!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.18!26.12!TGIF1;;chr18:3449618..3449634,+!p13@TGIF1!1.18!17.41!TGIF1;;chr21:36260980..36261011,-!p1@RUNX1!1.17!387.72!RUNX1;;chr6:143266297..143266356,-!p1@HIVEP2!1.17!66.17!HIVEP2;;chr7:128577972..128578047,+!p1@IRF5!1.17!21.77!IRF5;;chr4:83822199..83822239,+!p2@THAP9!1.17!16.54!THAP9;;chr2:68615031..68615055,+!p3@PLEK!1.17!13.64!PLEK;;chr4:103423120..103423142,+!p8@NFKB1!1.17!13.64!NFKB1;;chr17:38497715..38497734,+!p8@RARA!1.17!13.64!RARA;;chr2:28615716..28615733,+!p1@FOSL2!1.16!628.59!FOSL2;;chr20:47894569..47894799,-!p1@ZNFX1!1.16!353.77!ZNFX1;;chr12:96588219..96588263,+!p2@ELK3!1.16!95.48!ELK3;;chr1:38325256..38325280,-!p1@MTF1!1.16!83.29!MTF1;;chr1:221052733..221052749,+!p2@HLX!1.16!17.70!HLX;;chrX:129244430..129244442,-!p5@ELF4!1.16!13.35!ELF4;;chr19:12902289..12902307,+!p1@JUNB!1.15!2949.98!JUNB;;chr6:15246261..15246312,+!p1@JARID2!1.15!315.75!JARID2;;chr2:70142189..70142223,+!p2@MXD1!1.15!93.16!MXD1;;chr8:123793959..123793977,+!p4@ZHX2!1.15!25.54!ZHX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.15!23.51!ZNF804A;;chr2:68615096..68615115,+!p5@PLEK!1.15!13.06!PLEK;;chr1:37947257..37947292,+!p4@ZC3H12A!1.15!13.06!ZC3H12A;;chr12:72056684..72056693,+!p13@THAP2!1.15!13.06!THAP2;;chr8:72756063..72756125,-!p1@MSC!1.14!25.83!MSC;;chr19:19496539..19496576,+!p8@GA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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000633,FF:0011109,FF:11866-125B3
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor1.CNhs13471.11866-125B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor1.CNhs13471.11866-125B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor1.CNhs13471.11866-125B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor1.CNhs13471.11866-125B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor1.CNhs13471.11866-125B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11866-125B3
 |is_a=EFO:0002091;;FF:0011109
 |is_obsolete=
+|library_id=CNhs13471
+|library_id_phase_based=2:CNhs13471
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11866
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11866
 |name=CD14+ monocytes - treated with Salmonella, donor1
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13471,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=4.4526
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFE2:5.2615939133;IRF7:5.25853077134;FOS_FOS{B,L1}_JUN{B,D}:5.16866833042;NFE2L2:4.89800500741;BACH2:4.88995744835;HLF:4.83896053744;IRF1,2:4.67061610979;NFKB1_REL_RELA:4.64885870804;CEBPA,B_DDIT3:4.59282629405;FOSL2:4.48203466345;FOXP3:4.24266379447;PAX2:4.0097461441;NFIL3:3.99736217835;PAX8:3.52134515485;SPIB:3.45755964551;DMAP1_NCOR{1,2}_SMARC:3.3336881015;HMGA1,2:3.19510813945;SPI1:3.17539667969;ATF5_CREB3:2.90035526812;ETS1,2:2.75636950651;ATF4:2.60076897295;ALX4:2.49448784039;NFATC1..3:2.47836384479;NFE2L1:2.35934567275;NANOG{mouse}:2.32931867975;NR1H4:2.29572296892;STAT2,4,6:2.23422771727;CREB1:2.22486347268;FOXN1:2.21432869791;ATF6:2.08598890114;CDX1,2,4:2.0827194559;RXRA_VDR{dimer}:2.02639288385;PAX3,7:1.9976982432;SREBF1,2:1.99404420677;RUNX1..3:1.93894676433;PDX1:1.7420430736;JUN:1.65837248013;ZBTB16:1.51063085315;STAT5{A,B}:1.48716917866;MAFB:1.32439835171;BPTF:1.27677204675;ATF2:1.22082655295;IKZF1:1.16326423916;PAX4:1.12710255032;HSF1,2:1.10962282113;ELF1,2,4:1.08496026913;PRDM1:1.02760697227;XBP1:0.888540952338;FOXO1,3,4:0.870863252347;HOX{A5,B5}:0.737993508792;NKX3-1:0.661516627947;EN1,2:0.612567561414;EP300:0.607984496132;PITX1..3:0.5902060092;OCT4_SOX2{dimer}:0.525918364942;TGIF1:0.511739096831;FOXD3:0.500412056009;SRF:0.490865717959;HMX1:0.476843323975;PAX1,9:0.470218814063;POU2F1..3:0.431811711878;PPARG:0.407959044344;ALX1:0.39563579865;FOXL1:0.374886741778;IKZF2:0.33346425093;HOXA9_MEIS1:0.310232822375;HBP1_HMGB_SSRP1_UBTF:0.272801851553;GLI1..3:0.186047287635;TFCP2:0.182060813113;TLX2:0.0959707678515;GATA4:-0.0130504946743;NKX2-2,8:-0.0906892675267;POU5F1:-0.113278203012;TBP:-0.153236336955;DBP:-0.257109605331;NR6A1:-0.335509327349;SMAD1..7,9:-0.367012160379;FOXM1:-0.373685350114;T:-0.395709111583;ESR1:-0.493369025444;HIF1A:-0.500168159176;EGR1..3:-0.536227119481;NANOG:-0.559414955458;MYB:-0.589267404385;NR3C1:-0.691154177961;FOX{D1,D2}:-0.697695476678;STAT1,3:-0.713187588124;RFX2..5_RFXANK_RFXAP:-0.758392556942;FOXP1:-0.759284718031;AHR_ARNT_ARNT2:-0.811018908787;MZF1:-0.822489247082;TAL1_TCF{3,4,12}:-0.855293791399;POU3F1..4:-0.879245914;NKX6-1,2:-0.955765825718;POU6F1:-0.957525245917;RBPJ:-0.979791607612;ADNP_IRX_SIX_ZHX:-1.0036642427;ZNF384:-1.05093641443;CRX:-1.06958510197;SOX2:-1.07868536041;HNF4A_NR2F1,2:-1.091711585;NFIX:-1.09846620188;MEF2{A,B,C,D}:-1.12609579461;RREB1:-1.12643737186;HOX{A4,D4}:-1.15722283455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.22011297545;HNF1A:-1.26925059537;RORA:-1.32589008361;TFAP4:-1.36548130209;REST:-1.3721100736;RXR{A,B,G}:-1.37650193097;CDC5L:-1.41101155857;VSX1,2:-1.42274085718;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.42851849862;MYFfamily:-1.43718353784;MED-1{core}:-1.44837140686;HES1:-1.4521676778;PRRX1,2:-1.45885795809;ESRRA:-1.46773291363;CUX2:-1.48662619974;PAX6:-1.49852066038;TBX4,5:-1.50932288193;NHLH1,2:-1.53957152834;ZBTB6:-1.55956952268;MTE{core}:-1.56209622247;TFDP1:-1.56396247175;ZFP161:-1.59982317191;FOXA2:-1.64645521931;TEAD1:-1.65994314361;E2F1..5:-1.6687775522;SOX5:-1.67203460274;SPZ1:-1.73102598698;NKX3-2:-1.75210578756;FOX{F1,F2,J1}:-1.7907485036;TLX1..3_NFIC{dimer}:-1.80427751808;ZNF238:-1.82104327179;UFEwm:-1.82296975904;TEF:-1.83315280996;SOX{8,9,10}:-1.83933381326;GATA6:-1.85486753727;PATZ1:-1.86692221732;GZF1:-1.86763864601;GCM1,2:-1.88287990595;AIRE:-1.89713889465;EVI1:-1.92512891743;GTF2A1,2:-1.93794318459;BREu{core}:-1.94828019494;GTF2I:-1.98563682773;ONECUT1,2:-1.99118188098;ZIC1..3:-1.99724032709;KLF4:-2.00177816607;XCPE1{core}:-2.00840538065;TFAP2B:-2.03846386285;TFAP2{A,C}:-2.15511037181;SP1:-2.17611430427;MTF1:-2.18323889607;ZNF148:-2.21571290956;NKX2-1,4:-2.21885981302;ZEB1:-2.22815902133;RFX1:-2.23445218276;TP53:-2.25460101378;MAZ:-2.42255817709;HIC1:-2.52495069397;SNAI1..3:-2.52546864701;HOX{A6,A7,B6,B7}:-2.5607221957;NKX2-3_NKX2-5:-2.61131390412;SOX17:-2.67911105545;TOPORS:-2.72453285321;ELK1,4_GABP{A,B1}:-2.73106156205;GFI1B:-2.74405843393;EBF1:-2.76994056796;ZNF423:-2.84074443531;MYBL2:-2.89209692981;PAX5:-2.92897325036;FOX{I1,J2}:-2.99330050011;NR5A1,2:-3.04884382928;ARID5B:-3.0897134857;POU1F1:-3.09207396618;MYOD1:-3.1142489433;FOXQ1:-3.15150985145;NFY{A,B,C}:-3.17525668655;LMO2:-3.42123784897;PBX1:-3.52792214171;bHLH_family:-3.56969684851;AR:-3.61999563981;GFI1:-3.65113634526;NRF1:-3.68621596111;YY1:-3.75676553816;LHX3,4:-3.82375653842;LEF1_TCF7_TCF7L1,2:-4.09051138784;HAND1,2:-4.1910072981;ZNF143:-4.3810708455
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11866-125B3;search_select_hide=table117:FF:11866-125B3
 }}

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FF:11866-125B3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0