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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004816
|accession_numbers=CAGE;DRX008063;DRR008935;DRZ000360;DRZ001745;DRZ011710;DRZ013095
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
Line 7: Line 9:
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!1.93!84.88!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!1.91!80.75!ATXN7;;chr9:3525727..3525828,-!p2@RFX3!1.80!154.29!RFX3;;chr1:25256756..25256774,-!p1@RUNX3!1.79!112.02!RUNX3;;chr10:35484053..35484076,+!p1@CREM!1.74!130.23!CREM;;chr4:109087445..109087463,-!p1@LEF1!1.74!53.95!LEF1;;chr2:231090433..231090469,+!p1@SP140!1.73!52.92!SP140;;chr19:16435625..16435682,+!p1@KLF2!1.71!1510.93!KLF2;;chr19:54058073..54058088,+!p1@ZNF331!1.71!49.83!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.67!1153.56!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.64!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.64!42.27!KDM5D;;chr10:35416142..35416169,+!p3@CREM!1.63!106.87!CREM;;chr5:133450365..133450444,+!p1@TCF7!1.62!176.62!TCF7;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.98!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.53!47.76!NFATC2;;chr6:106546808..106546833,+!p3@PRDM1!1.53!40.89!PRDM1;;chr3:71542615..71542644,-!p12@FOXP1!1.51!31.27!FOXP1;;chr19:45971246..45971265,+!p1@FOSB!1.47!508.91!FOSB;;chr17:37934365..37934387,-!p2@IKZF3!1.47!28.52!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.45!27.15!ARID5A;;chr19:54041669..54041697,+!p2@ZNF331!1.44!26.80!ZNF331;;chr17:45810594..45810608,+!p1@TBX21!1.43!25.77!TBX21;;chr2:157189180..157189290,-!p1@NR4A2!1.42!126.80!NR4A2;;chr15:60884706..60884743,-!p1@RORA!1.41!125.08!RORA;;chr5:133451347..133451358,+!p3@TCF7!1.40!24.05!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.54!AKNA;;chr20:56195474..56195506,-!p1@ZBP1!1.38!23.02!ZBP1;;chr17:38497662..38497713,+!p4@RARA!1.37!26.12!RARA;;chr10:35484090..35484104,+!p6@CREM!1.37!22.34!CREM;;chr7:50344251..50344288,+!p3@IKZF1!1.37!22.34!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!1.35!58.76!ZNF101;;chr2:231090471..231090504,+!p2@SP140!1.35!21.30!SP140;;chr17:37934204..37934241,-!p3@IKZF3!1.33!20.27!IKZF3;;chr14:64970670..64970712,-!p3@ZBTB25!1.32!42.61!ZBTB25;;chr2:208394817..208394834,+!p3@CREB1!1.31!75.94!CREB1;;chr2:192015750..192015793,-!p2@STAT4!1.31!26.12!STAT4;;chr21:36421535..36421610,-!p2@RUNX1!1.29!64.26!RUNX1;;chr14:75745523..75745537,+!p1@FOS!1.28!2108.84!FOS;;chr3:71542684..71542720,-!p18@FOXP1!1.28!18.21!FOXP1;;chr16:79634624..79634642,-!p1@MAF!1.27!67.69!MAF;;chr10:3824332..3824425,-!p4@KLF6!1.27!28.52!KLF6;;chr3:71542651..71542683,-!p22@FOXP1!1.27!17.52!FOXP1;;chr11:128392273..128392308,-!p2@ETS1!1.26!71.82!ETS1;;chr3:71355163..71355209,-!p5@FOXP1!1.26!23.71!FOXP1;;chr14:75988771..75988826,+!p1@BATF!1.26!23.02!BATF;;chr19:12902289..12902307,+!p1@JUNB!1.25!3720.45!JUNB;;chr7:50343895..50343936,+!p5@IKZF1!1.25!16.84!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.22!15.46!EOMES;;chr6:391743..391759,+!p1@IRF4!1.20!14.78!IRF4;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!43.98!ZBTB25;;chr19:45972701..45972774,+!p2@FOSB!1.17!18.90!FOSB;;chr12:72056800..72056834,+!p1@THAP2!1.17!18.56!THAP2;;chr3:18486354..18486377,-!p2@SATB1!1.16!16.84!SATB1;;chr13:74707894..74707947,-!p6@KLF12!1.16!15.12!KLF12;;chr10:35416172..35416184,+!p13@CREM!1.16!13.40!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.16!13.40!PRDM1;;chr11:128392085..128392232,-!p1@ETS1!1.15!436.75!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.15!82.81!ELF1;;chr8:123793988..123794016,+!p1@ZHX2!1.15!23.37!ZHX2;;chr8:81397846..81397860,+!p3@ZBTB10!1.15!16.49!ZBTB10;;chr10:35416125..35416138,+!p10@CREM!1.15!15.46!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.15!15.46!GATA3;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.15!PBX4;;chr9:102584262..102584276,+!p1@NR4A3!1.13!28.18!NR4A3;;chr17:38020392..38020477,-!p1@IKZF3!1.13!12.37!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.12!27.15!ZNF263;;chr6:91006575..91006602,-!p2@BACH2!1.11!17.52!BACH2;;chr2:68592406..68592424,+!p1@PLEK!1.11!12.03!PLEK;;chr3:39195075..39195088,-!p1@CSRNP1!1.10!72.16!CSRNP1;;chr8:60031619..60031676,-!p1@TOX!1.10!25.43!TOX;;chr4:109090075..109090095,-!p2@LEF1!1.10!11.68!LEF1;;chr16:79634595..79634620,-!p2@MAF!1.09!20.62!MAF;;chr20:56195525..56195556,-!p2@ZBP1!1.09!11.34!ZBP1;;chr5:142814241..142814278,-!p12@NR3C1!1.09!11.34!NR3C1;;chr2:97202480..97202499,+!p1@ARID5A!1.08!113.40!ARID5A;;chr3:23986824..23986848,+!p2@NR1D2!1.08!62.54!NR1D2;;chr16:79633894..79633954,-!p3@MAF!1.07!20.62!MAF;;chr7:50344289..50344323,+!p1@IKZF1!1.07!10.65!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.05!BACH2;;chr3:71179699..71179744,-!p2@FOXP1!1.05!78.00!FOXP1;;chr6:152011654..152011682,+!p1@ESR1!1.05!10.31!ESR1;;chr4:38665769..38665801,+!p2@KLF3!1.04!91.06!KLF3;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.97!IKZF3;;chr8:81397820..81397836,+!p2@ZBTB10!1.03!12.37!ZBTB10;;chr10:8096631..8096660,+!p1@GATA3!1.03!11.68!GATA3;;chr10:35416223..35416234,+!p12@CREM!1.03!9.62!CREM;;chr11:85375237..85375277,-!p4@CREBZF!1.01!10.65!CREBZF;;chr2:192015677..192015691,-!p3@STAT4!1.01!9.28!STAT4;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.28!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.00!110.30!FLI1;;chr10:104154246..104154347,+!p3@NFKB2!1.00!56.35!NFKB2;;chr9:114287433..114287513,+!p1@ZNF483!1.00!23.71!ZNF483;;chr16:88752889..88752921,-!p1@SNAI3!1.00!10.65!SNAI3;;chr4:109089901..109089930,-!p3@LEF1!1.00!8.93!LEF1;;chr19:54041645..54041661,+!p5@ZNF331!1.00!8.93!ZNF331;;chrX:49121165..49121179,-!p1@FOXP3!1.00!8.93!FOXP3;;chr4:81104895..81104920,+!p2@PRDM8!0.98!13.06!PRDM8;;chr19:16435523..16435619,+!p2@KLF2!0.98!12.03!KLF2;;chr6:106546786..106546802,+!p6@PRDM1!0.98!8.59!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.59!ZFY;;chr11:67007548..67007610,+!p3@KDM2A!0.97!63.91!KDM2A;;chr3:63898321..63898396,+!p3@ATXN7!0.97!19.59!ATXN7;;chr1:45805693..45805718,+!p3@TOE1!0.97!18.21!TOE1;;chr19:54040550..54040594,+!p20@ZNF331!0.97!8.25!ZNF331;;chr6:106546731..106546755,+!p5@PRDM1!0.97!8.25!PRDM1;;chr5:131826457..131826514,-!p1@IRF1!0.96!327.13!IRF1;;chr20:44600199..44600219,-!p3@ZNF335!0.96!11.00!ZNF335;;chr14:75746722..75746777,+!p2@FOS!0.96!10.65!FOS;;chr6:12009042..12009092,+!p6@HIVEP1!0.96!10.65!HIVEP1;;chr13:74708246..74708264,-!p8@KLF12!0.95!8.93!KLF12;;chr10:135121763..135121783,+!p5@ZNF511!0.95!7.90!ZNF511;;chr4:109088089..109088101,-!p11@LEF1!0.95!7.90!LEF1;;chr4:109089573..109089585,-!p8@LEF1!0.95!7.90!LEF1;;chr19:12444440..12444455,-!p1@ZNF563!0.94!13.75!ZNF563;;chr12:72056773..72056796,+!p3@THAP2!0.93!9.97!THAP2;;chr10:35485013..35485034,+!p15@CREM!0.93!7.56!CREM;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.56!CREB3L2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!42.95!ZNF10;;chrX:106960180..106960197,-!p2@TSC22D3!0.92!29.21!TSC22D3;;chr11:128392309..128392350,-!p3@ETS1!0.92!17.87!ETS1;;chr2:157199008..157199023,-!p3@NR4A2!0.92!15.81!NR4A2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.91!788.28!ZFP36L2;;chrX:106960221..106960236,-!p3@TSC22D3!0.91!20.62!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!0.91!20.27!NFATC1;;chr9:102584241..102584261,+!p4@NR4A3!0.91!11.34!NR4A3;;chr1:59250262..59250296,-!p5@JUN!0.91!7.22!JUN;;chrX:101186981..101187030,-!p1@ZMAT1!0.90!23.37!ZMAT1;;chr13:74708029..74708077,-!p2@KLF12!0.90!20.62!KLF12;;chr19:54041603..54041615,+!p10@ZNF331!0.90!6.87!ZNF331;;chr19:54058108..54058119,+!p19@ZNF331!0.90!6.87!ZNF331;;chr19:18392422..18392440,-!p1@JUND!0.89!991.37!JUND;;chr7:104654690..104654704,+!p2@MLL5!0.89!13.75!MLL5;;chr4:57522166..57522260,-!p2@HOPX!0.89!7.90!HOPX;;chr2:208031542..208031595,-!p2@KLF7!0.88!48.45!KLF7;;chr7:77428066..77428132,+!p2@PHTF2!0.88!45.02!PHTF2;;chr8:81397876..81397898,+!p5@ZBTB10!0.88!7.90!ZBTB10;;chr8:41909982..41910009,-!p2@KAT6A!0.88!7.56!KAT6A;;chr4:57522674..57522699,-!p5@HOPX!0.88!6.53!HOPX;;chr14:75988831..75988847,+!p2@BATF!0.88!6.53!BATF;;chr14:99738138..99738163,-!p1@BCL11B!0.88!6.53!BCL11B;;chr9:32550965..32551031,-!p4@TOPORS!0.87!10.31!TOPORS;;chr18:46475696..46475713,-!p1@SMAD7!0.87!7.22!SMAD7;;chr8:60031563..60031574,-!p7@TOX!0.86!6.19!TOX;;chr15:60884747..60884774,-!p3@RORA!0.85!15.46!RORA;;chr20:51588873..51588953,+!p1@TSHZ2!0.85!8.25!TSHZ2;;chr19:52674696..52674758,-!p1@ZNF836!0.84!18.56!ZNF836;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.68!ZNF276;;chr17:38020557..38020572,-!p4@IKZF3!0.84!5.84!IKZF3;;chr19:54041574..54041589,+!p6@ZNF331!0.84!5.84!ZNF331;;chr20:52226313..52226350,-!p3@ZNF217!0.84!5.84!ZNF217;;chr7:50348268..50348366,+!p4@IKZF1!0.84!5.84!IKZF1;;chr2:231090344..231090361,-!p3@SP110!0.84!5.84!SP110;;chr3:18487057..18487105,-!p4@SATB1!0.84!5.84!SATB1;;chr14:64971893..64971928,-!p8@ZBTB25!0.84!5.84!ZBTB25;;chr16:68119324..68119364,+!p1@NFATC3!0.83!27.49!NFATC3;;chr17:36861735..36861755,+!p4@MLLT6!0.83!10.31!MLLT6;;chr4:38665810..38665827,+!p1@KLF3!0.82!87.28!KLF3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.52!ZNF681;;chr8:67525443..67525459,-!p2@MYBL1!0.82!8.59!MYBL1;;chr19:49140609..49140643,-!p1@DBP!0.81!33.33!DBP;;chr14:65569101..65569119,-!p3@MAX!0.81!18.56!MAX;;chr11:111249993..111250006,-!p1@POU2AF1!0.81!5.50!POU2AF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.81!5.50!CREB3L2;;chr4:109088130..109088163,-!p13@LEF1!0.81!5.50!LEF1;;chr4:109088940..109089037,-!p4@LEF1!0.81!5.50!LEF1;;chr10:3827389..3827408,-!p1@KLF6!0.80!445.68!KLF6;;chr13:41240717..41240735,-!p2@FOXO1!0.80!38.83!FOXO1;;chr9:20621927..20621996,-!p3@MLLT3!0.80!9.28!MLLT3;;chr19:38085768..38085821,+!p1@ZNF540!0.80!8.25!ZNF540;;chrX:131623982..131624011,-!p6@MBNL3!0.80!7.90!MBNL3;;chr5:172483347..172483407,+!p1@C5orf41!0.79!41.92!CREBRF;;chr19:12721790..12721810,+!p2@ZNF791!0.79!15.12!ZNF791;;chr9:3526360..3526421,-!p5@RFX3!0.79!9.97!RFX3;;chrX:106960249..106960260,-!p5@TSC22D3!0.79!8.59!TSC22D3;;chr7:104654718..104654741,+!p3@MLL5!0.79!7.90!MLL5;;chr1:41827095..41827155,+!p1@FOXO6!0.79!7.22!FOXO6;;chr20:51589835..51589848,+!p5@TSHZ2!0.79!5.15!TSHZ2;;chr21:36421347..36421380,-!p8@RUNX1!0.79!5.15!RUNX1;;chr7:50344144..50344157,+!p6@IKZF1!0.79!5.15!IKZF1;;chrY:21906623..21906637,-!p3@KDM5D!0.79!5.15!KDM5D;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr2:100759037..100759058,-!p2@AFF3!0.79!5.15!AFF3;;chr2:157189617..157189667,-!p4@NR4A2!0.79!5.15!NR4A2;;chr2:68592394..68592405,+!p2@PLEK!0.79!5.15!PLEK;;chr19:47616992..47617011,-!p4@ZC3H4!0.78!11.34!ZC3H4;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 41:
|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11798-124C7
|fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11798-124C7
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg38.nobarcode.ctss.bed.gz
|id=FF:11798-124C7
|id=FF:11798-124C7
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_a=EFO:0002091;;FF:0000002;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs13237
|library_id_phase_based=2:CNhs13237
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11798
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11798
|name=CD4+CD25-CD45RA- memory conventional T cells, donor2
|name=CD4+CD25-CD45RA- memory conventional T cells, donor2
|namespace=
|namespace=
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13237,LSID1006,release012,COMPLETED
|profile_hcage=CNhs13237,LSID1006,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 78:
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Line 81: Line 100:
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|top_motifs=PAX3,7:3.43646403234;CREB1:3.32319686439;RUNX1..3:3.16826767223;FOX{D1,D2}:3.14110359386;FOX{F1,F2,J1}:3.02565303924;ELF1,2,4:2.82985874546;RFX2..5_RFXANK_RFXAP:2.80130852863;BPTF:2.67758779671;ATF5_CREB3:2.6463737606;RORA:2.63388669165;FOXO1,3,4:2.61538900582;FOX{I1,J2}:2.527770664;T:2.46007338018;PDX1:2.45509725982;RFX1:2.38315866695;ATF4:2.37044378143;CDX1,2,4:2.10968215143;ETS1,2:2.04452079794;HMX1:2.03822856359;PBX1:1.9955501591;DMAP1_NCOR{1,2}_SMARC:1.98790891375;FOXN1:1.73542631063;TLX2:1.72457042486;LEF1_TCF7_TCF7L1,2:1.5793869432;ATF2:1.53941423817;SPI1:1.40805877266;IRF1,2:1.40375549166;GATA6:1.38630339268;PAX2:1.38162717139;JUN:1.37045148774;ELK1,4_GABP{A,B1}:1.34835197774;TGIF1:1.28310940652;ATF6:1.15538386565;SPIB:1.00161227386;NFIL3:0.986039899856;NFIX:0.9771640857;PAX6:0.947917251302;PAX4:0.939856802861;NFATC1..3:0.931901450588;NANOG{mouse}:0.88952980529;SOX2:0.818840564937;BREu{core}:0.762806703635;NFKB1_REL_RELA:0.730810488778;ZBTB16:0.704879763974;MAFB:0.596267554478;NKX2-1,4:0.51244279308;IRF7:0.50444966963;ZEB1:0.458902158108;STAT1,3:0.433368494807;TBX4,5:0.428892647367;HIF1A:0.401079212537;FOXQ1:0.398410422354;AHR_ARNT_ARNT2:0.356111006263;SNAI1..3:0.339105746931;SREBF1,2:0.329226501629;CRX:0.324355459717;HES1:0.286966941227;HOX{A6,A7,B6,B7}:0.281351280921;MYOD1:0.246480096578;FOXP1:0.241718840424;NFE2L1:0.236043909621;LMO2:0.235311470142;FOXA2:0.215062142898;NR5A1,2:0.213923255314;IKZF2:0.197996803965;YY1:0.189293283233;EP300:0.179321492524;POU2F1..3:0.15903017633;TAL1_TCF{3,4,12}:0.151082446164;NKX6-1,2:0.144926723267;POU1F1:0.0978752013162;SOX5:0.0914267814927;CUX2:0.0322537124233;STAT5{A,B}:-0.0244336338183;NKX2-2,8:-0.0375873882132;MYB:-0.04763610552;AR:-0.0632911951945;NFY{A,B,C}:-0.0678683504341;NANOG:-0.0717100001762;PITX1..3:-0.0960740017043;SPZ1:-0.0976885926818;FOSL2:-0.10435786936;OCT4_SOX2{dimer}:-0.142574208002;PAX5:-0.176854535284;NRF1:-0.180992244926;ZNF384:-0.186921681951;STAT2,4,6:-0.280490799338;EGR1..3:-0.295185326743;E2F1..5:-0.301288514554;NFE2L2:-0.342502249877;BACH2:-0.347955874358;RBPJ:-0.350415459757;HLF:-0.368822085862;FOS_FOS{B,L1}_JUN{B,D}:-0.380773407461;ALX1:-0.385215366666;CEBPA,B_DDIT3:-0.396480034125;ZNF143:-0.43547112643;HNF4A_NR2F1,2:-0.43816711346;NFE2:-0.43872344239;EVI1:-0.44861370594;ZNF148:-0.4537338142;HMGA1,2:-0.457829839172;HBP1_HMGB_SSRP1_UBTF:-0.465369832656;VSX1,2:-0.469422796534;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.472041666011;GFI1:-0.473420626082;DBP:-0.520005947728;HNF1A:-0.521547246747;NKX3-1:-0.525862104132;HAND1,2:-0.546377867351;GLI1..3:-0.569132199696;FOXD3:-0.569512547522;SOX{8,9,10}:-0.573395665957;PRRX1,2:-0.584008000704;NHLH1,2:-0.589846628864;PPARG:-0.616871459654;FOXP3:-0.646244769943;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.651547638785;FOXM1:-0.672403050381;SRF:-0.708331210097;MYFfamily:-0.710186721795;SMAD1..7,9:-0.72882784479;GCM1,2:-0.762432716522;ALX4:-0.792249546473;RXRA_VDR{dimer}:-0.837303444988;MEF2{A,B,C,D}:-0.852024752159;bHLH_family:-0.856381462885;RREB1:-0.857365044134;ESRRA:-0.891856582929;PAX8:-0.896682013602;MED-1{core}:-0.896985587783;ZFP161:-0.966391696124;XBP1:-0.969114090622;ZBTB6:-0.992894524748;HOX{A5,B5}:-1.00088280716;GFI1B:-1.01409649271;MZF1:-1.02587734818;AIRE:-1.05037047904;ADNP_IRX_SIX_ZHX:-1.05445040854;MTF1:-1.08397549683;SOX17:-1.10781518851;MYBL2:-1.11138734613;ZNF238:-1.11313176793;MAZ:-1.12503734383;POU5F1:-1.1284837882;TFAP4:-1.17999025753;TP53:-1.19074419478;TFDP1:-1.19881599937;ARID5B:-1.21611334128;PATZ1:-1.22220195378;HSF1,2:-1.22428173235;REST:-1.23366373359;TBP:-1.28121246381;MTE{core}:-1.28396833869;NR6A1:-1.31287656256;PRDM1:-1.32004619767;LHX3,4:-1.33044569932;GATA4:-1.36862951741;TOPORS:-1.40332123276;NR1H4:-1.41235995309;TFAP2B:-1.43601217776;TFCP2:-1.4548962279;HOXA9_MEIS1:-1.45599317374;HIC1:-1.45620991113;ZNF423:-1.45845433903;UFEwm:-1.47122490442;SP1:-1.50612863425;NKX2-3_NKX2-5:-1.51925843616;NR3C1:-1.58139896862;GTF2A1,2:-1.6254867612;GTF2I:-1.63606793303;POU3F1..4:-1.66613650233;CDC5L:-1.67927205083;XCPE1{core}:-1.68911975966;ONECUT1,2:-1.72140268104;TLX1..3_NFIC{dimer}:-1.72541766449;FOXL1:-1.74548545937;TEAD1:-1.74629351694;EN1,2:-1.82091793165;ZIC1..3:-1.86740326929;GZF1:-1.86926787413;HOX{A4,D4}:-1.87298027188;EBF1:-1.89515212703;ESR1:-1.89771799247;KLF4:-1.93344921373;RXR{A,B,G}:-1.94174841754;TFAP2{A,C}:-1.98697081226;POU6F1:-2.03937369179;PAX1,9:-2.10786788615;TEF:-2.39387833024;NKX3-2:-2.52156413546;IKZF1:-2.99418364174
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11798-124C7;search_select_hide=table117:FF:11798-124C7
}}
}}

Latest revision as of 18:21, 4 June 2020

Name:CD4+CD25-CD45RA- memory conventional T cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13237
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typeT cell
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number25
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004816
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13237 CAGE DRX008063 DRR008935
Accession ID Hg19

Library idBAMCTSS
CNhs13237 DRZ000360 DRZ001745
Accession ID Hg38

Library idBAMCTSS
CNhs13237 DRZ011710 DRZ013095
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.612
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.227
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.571
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.167
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.486
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.728
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.856
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.401
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.308
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.71
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.379
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.813
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.434
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.189
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.423
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.308
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.187
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.877
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.128
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.375
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.764
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.861
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.616
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.736
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.941
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.376
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.915
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.434
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340.227
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.376
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13237

Jaspar motifP-value
MA0002.21.0602e-6
MA0003.10.621
MA0004.10.86
MA0006.10.114
MA0007.10.641
MA0009.10.141
MA0014.10.507
MA0017.10.898
MA0018.22.42761e-9
MA0019.10.476
MA0024.10.492
MA0025.10.0928
MA0027.10.709
MA0028.16.3011e-6
MA0029.10.398
MA0030.13.2401e-4
MA0031.11.50525e-5
MA0035.20.126
MA0038.10.161
MA0039.20.815
MA0040.10.679
MA0041.10.88
MA0042.10.396
MA0043.10.00128
MA0046.10.27
MA0047.20.0162
MA0048.10.871
MA0050.12.39333e-8
MA0051.11.55356e-4
MA0052.10.00705
MA0055.10.775
MA0057.10.508
MA0058.10.658
MA0059.10.656
MA0060.10.502
MA0061.14.8412e-4
MA0062.27.58052e-21
MA0065.20.344
MA0066.10.334
MA0067.10.00705
MA0068.10.824
MA0069.10.99
MA0070.10.924
MA0071.10.922
MA0072.10.0548
MA0073.10.825
MA0074.10.472
MA0076.11.73226e-8
MA0077.10.0295
MA0078.10.674
MA0079.20.651
MA0080.29.00694e-12
MA0081.10.00693
MA0083.10.186
MA0084.10.502
MA0087.10.72
MA0088.10.383
MA0090.12.3983e-4
MA0091.10.348
MA0092.10.928
MA0093.10.908
MA0099.20.0633
MA0100.10.429
MA0101.10.0746
MA0102.20.986
MA0103.10.448
MA0104.20.116
MA0105.15.34104e-6
MA0106.10.104
MA0107.10.135
MA0108.27.05642e-5
MA0111.10.532
MA0112.20.906
MA0113.10.802
MA0114.10.975
MA0115.10.458
MA0116.10.00214
MA0117.10.0322
MA0119.10.297
MA0122.10.406
MA0124.10.355
MA0125.10.231
MA0131.10.0913
MA0135.10.277
MA0136.12.21808e-24
MA0137.20.672
MA0138.20.179
MA0139.10.038
MA0140.10.0816
MA0141.10.308
MA0142.10.35
MA0143.10.297
MA0144.10.903
MA0145.10.0604
MA0146.10.772
MA0147.10.141
MA0148.10.0891
MA0149.10.283
MA0150.10.748
MA0152.10.0186
MA0153.10.346
MA0154.10.204
MA0155.10.262
MA0156.12.91752e-22
MA0157.13.68816e-4
MA0159.10.541
MA0160.10.873
MA0162.10.449
MA0163.14.26893e-5
MA0164.10.617
MA0258.10.889
MA0259.10.221



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13237

Novel motifP-value
10.553
100.0187
1000.9
1010.344
1020.988
1030.535
1040.63
1050.241
1060.505
1070.0101
1080.516
1090.157
110.292
1100.922
1110.937
1120.882
1130.28
1140.637
1150.234
1160.131
1170.00243
1180.396
1190.378
120.6
1201
1210.962
1220.774
1230.0566
1240.633
1250.669
1260.408
1270.945
1280.662
1290.902
130.545
1300.37
1310.765
1320.274
1330.655
1340.91
1350.995
1360.856
1370.0186
1380.459
1390.0549
140.61
1400.196
1410.853
1420.622
1430.00161
1440.944
1450.968
1460.462
1470.0151
1480.255
1490.528
150.175
1500.727
1510.674
1520.511
1530.877
1540.459
1550.0403
1560.321
1570.332
1580.0163
1590.303
160.533
1600.185
1610.913
1620.0438
1630.388
1640.143
1650.517
1660.501
1670.287
1680.531
1690.22
170.728
180.863
190.0447
20.425
200.332
210.826
220.402
230.529
240.783
250.0806
260.687
270.627
280.453
290.027
30.303
300.128
310.714
320.033
330.16
340.376
350.235
360.0301
370.193
380.728
390.258
40.706
400.638
410.0926
420.183
430.556
440.771
450.24
460.63
470.305
480.534
490.231
50.343
500.492
510.87
520.399
530.613
540.995
550.725
560.922
570.964
580.151
590.562
60.761
600.551
610.0765
620.182
630.823
640.715
650.701
660.781
670.526
680.823
690.697
70.346
700.0975
710.0904
720.133
730.567
740.682
750.0198
760.156
770.0169
780.823
790.793
80.589
800.0021
810.56
820.313
830.457
840.651
850.699
860.0998
870.866
880.837
890.0542
90.924
900.142
910.844
920.857
930.516
940.19
950.00552
960.35
970.424
980.233
991.44131e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13237


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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