FF:11798-124C7: Difference between revisions

Latest revision as of 18:21, 4 June 2020

Name:	CD4+CD25-CD45RA- memory conventional T cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13237
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	25
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004816

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13237		CAGE		DRX008063		DRR008935

Accession ID Hg19

Library id		BAM		CTSS
CNhs13237		DRZ000360		DRZ001745

Accession ID Hg38

Library id		BAM		CTSS
CNhs13237		DRZ011710		DRZ013095

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.612
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.227
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.571
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.167
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.486
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.728
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.856
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.401
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.308
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.71
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.379
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.813
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.434
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.189
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.423
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.308
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.187
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.877
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.128
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.375
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.764
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.861
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.616
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.736
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.941
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.376
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.915
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.434
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.227
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.376
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13237

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.0602e-6
MA0003.1	MA0003.1	0.621
MA0004.1	MA0004.1	0.86
MA0006.1	MA0006.1	0.114
MA0007.1	MA0007.1	0.641
MA0009.1	MA0009.1	0.141
MA0014.1	MA0014.1	0.507
MA0017.1	MA0017.1	0.898
MA0018.2	MA0018.2	2.42761e-9
MA0019.1	MA0019.1	0.476
MA0024.1	MA0024.1	0.492
MA0025.1	MA0025.1	0.0928
MA0027.1	MA0027.1	0.709
MA0028.1	MA0028.1	6.3011e-6
MA0029.1	MA0029.1	0.398
MA0030.1	MA0030.1	3.2401e-4
MA0031.1	MA0031.1	1.50525e-5
MA0035.2	MA0035.2	0.126
MA0038.1	MA0038.1	0.161
MA0039.2	MA0039.2	0.815
MA0040.1	MA0040.1	0.679
MA0041.1	MA0041.1	0.88
MA0042.1	MA0042.1	0.396
MA0043.1	MA0043.1	0.00128
MA0046.1	MA0046.1	0.27
MA0047.2	MA0047.2	0.0162
MA0048.1	MA0048.1	0.871
MA0050.1	MA0050.1	2.39333e-8
MA0051.1	MA0051.1	1.55356e-4
MA0052.1	MA0052.1	0.00705
MA0055.1	MA0055.1	0.775
MA0057.1	MA0057.1	0.508
MA0058.1	MA0058.1	0.658
MA0059.1	MA0059.1	0.656
MA0060.1	MA0060.1	0.502
MA0061.1	MA0061.1	4.8412e-4
MA0062.2	MA0062.2	7.58052e-21
MA0065.2	MA0065.2	0.344
MA0066.1	MA0066.1	0.334
MA0067.1	MA0067.1	0.00705
MA0068.1	MA0068.1	0.824
MA0069.1	MA0069.1	0.99
MA0070.1	MA0070.1	0.924
MA0071.1	MA0071.1	0.922
MA0072.1	MA0072.1	0.0548
MA0073.1	MA0073.1	0.825
MA0074.1	MA0074.1	0.472
MA0076.1	MA0076.1	1.73226e-8
MA0077.1	MA0077.1	0.0295
MA0078.1	MA0078.1	0.674
MA0079.2	MA0079.2	0.651
MA0080.2	MA0080.2	9.00694e-12
MA0081.1	MA0081.1	0.00693
MA0083.1	MA0083.1	0.186
MA0084.1	MA0084.1	0.502
MA0087.1	MA0087.1	0.72
MA0088.1	MA0088.1	0.383
MA0090.1	MA0090.1	2.3983e-4
MA0091.1	MA0091.1	0.348
MA0092.1	MA0092.1	0.928
MA0093.1	MA0093.1	0.908
MA0099.2	MA0099.2	0.0633
MA0100.1	MA0100.1	0.429
MA0101.1	MA0101.1	0.0746
MA0102.2	MA0102.2	0.986
MA0103.1	MA0103.1	0.448
MA0104.2	MA0104.2	0.116
MA0105.1	MA0105.1	5.34104e-6
MA0106.1	MA0106.1	0.104
MA0107.1	MA0107.1	0.135
MA0108.2	MA0108.2	7.05642e-5
MA0111.1	MA0111.1	0.532
MA0112.2	MA0112.2	0.906
MA0113.1	MA0113.1	0.802
MA0114.1	MA0114.1	0.975
MA0115.1	MA0115.1	0.458
MA0116.1	MA0116.1	0.00214
MA0117.1	MA0117.1	0.0322
MA0119.1	MA0119.1	0.297
MA0122.1	MA0122.1	0.406
MA0124.1	MA0124.1	0.355
MA0125.1	MA0125.1	0.231
MA0131.1	MA0131.1	0.0913
MA0135.1	MA0135.1	0.277
MA0136.1	MA0136.1	2.21808e-24
MA0137.2	MA0137.2	0.672
MA0138.2	MA0138.2	0.179
MA0139.1	MA0139.1	0.038
MA0140.1	MA0140.1	0.0816
MA0141.1	MA0141.1	0.308
MA0142.1	MA0142.1	0.35
MA0143.1	MA0143.1	0.297
MA0144.1	MA0144.1	0.903
MA0145.1	MA0145.1	0.0604
MA0146.1	MA0146.1	0.772
MA0147.1	MA0147.1	0.141
MA0148.1	MA0148.1	0.0891
MA0149.1	MA0149.1	0.283
MA0150.1	MA0150.1	0.748
MA0152.1	MA0152.1	0.0186
MA0153.1	MA0153.1	0.346
MA0154.1	MA0154.1	0.204
MA0155.1	MA0155.1	0.262
MA0156.1	MA0156.1	2.91752e-22
MA0157.1	MA0157.1	3.68816e-4
MA0159.1	MA0159.1	0.541
MA0160.1	MA0160.1	0.873
MA0162.1	MA0162.1	0.449
MA0163.1	MA0163.1	4.26893e-5
MA0164.1	MA0164.1	0.617
MA0258.1	MA0258.1	0.889
MA0259.1	MA0259.1	0.221

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13237

Novel motif	Logo	P-value
1	1	0.553
10	10	0.0187
100	100	0.9
101	101	0.344
102	102	0.988
103	103	0.535
104	104	0.63
105	105	0.241
106	106	0.505
107	107	0.0101
108	108	0.516
109	109	0.157
11	11	0.292
110	110	0.922
111	111	0.937
112	112	0.882
113	113	0.28
114	114	0.637
115	115	0.234
116	116	0.131
117	117	0.00243
118	118	0.396
119	119	0.378
12	12	0.6
120	120	1
121	121	0.962
122	122	0.774
123	123	0.0566
124	124	0.633
125	125	0.669
126	126	0.408
127	127	0.945
128	128	0.662
129	129	0.902
13	13	0.545
130	130	0.37
131	131	0.765
132	132	0.274
133	133	0.655
134	134	0.91
135	135	0.995
136	136	0.856
137	137	0.0186
138	138	0.459
139	139	0.0549
14	14	0.61
140	140	0.196
141	141	0.853
142	142	0.622
143	143	0.00161
144	144	0.944
145	145	0.968
146	146	0.462
147	147	0.0151
148	148	0.255
149	149	0.528
15	15	0.175
150	150	0.727
151	151	0.674
152	152	0.511
153	153	0.877
154	154	0.459
155	155	0.0403
156	156	0.321
157	157	0.332
158	158	0.0163
159	159	0.303
16	16	0.533
160	160	0.185
161	161	0.913
162	162	0.0438
163	163	0.388
164	164	0.143
165	165	0.517
166	166	0.501
167	167	0.287
168	168	0.531
169	169	0.22
17	17	0.728
18	18	0.863
19	19	0.0447
2	2	0.425
20	20	0.332
21	21	0.826
22	22	0.402
23	23	0.529
24	24	0.783
25	25	0.0806
26	26	0.687
27	27	0.627
28	28	0.453
29	29	0.027
3	3	0.303
30	30	0.128
31	31	0.714
32	32	0.033
33	33	0.16
34	34	0.376
35	35	0.235
36	36	0.0301
37	37	0.193
38	38	0.728
39	39	0.258
4	4	0.706
40	40	0.638
41	41	0.0926
42	42	0.183
43	43	0.556
44	44	0.771
45	45	0.24
46	46	0.63
47	47	0.305
48	48	0.534
49	49	0.231
5	5	0.343
50	50	0.492
51	51	0.87
52	52	0.399
53	53	0.613
54	54	0.995
55	55	0.725
56	56	0.922
57	57	0.964
58	58	0.151
59	59	0.562
6	6	0.761
60	60	0.551
61	61	0.0765
62	62	0.182
63	63	0.823
64	64	0.715
65	65	0.701
66	66	0.781
67	67	0.526
68	68	0.823
69	69	0.697
7	7	0.346
70	70	0.0975
71	71	0.0904
72	72	0.133
73	73	0.567
74	74	0.682
75	75	0.0198
76	76	0.156
77	77	0.0169
78	78	0.823
79	79	0.793
8	8	0.589
80	80	0.0021
81	81	0.56
82	82	0.313
83	83	0.457
84	84	0.651
85	85	0.699
86	86	0.0998
87	87	0.866
88	88	0.837
89	89	0.0542
9	9	0.924
90	90	0.142
91	91	0.844
92	92	0.857
93	93	0.516
94	94	0.19
95	95	0.00552
96	96	0.35
97	97	0.424
98	98	0.233
99	99	1.44131e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13237

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004816
+|accession_numbers=CAGE;DRX008063;DRR008935;DRZ000360;DRZ001745;DRZ011710;DRZ013095
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!1.93!84.88!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!1.91!80.75!ATXN7;;chr9:3525727..3525828,-!p2@RFX3!1.80!154.29!RFX3;;chr1:25256756..25256774,-!p1@RUNX3!1.79!112.02!RUNX3;;chr10:35484053..35484076,+!p1@CREM!1.74!130.23!CREM;;chr4:109087445..109087463,-!p1@LEF1!1.74!53.95!LEF1;;chr2:231090433..231090469,+!p1@SP140!1.73!52.92!SP140;;chr19:16435625..16435682,+!p1@KLF2!1.71!1510.93!KLF2;;chr19:54058073..54058088,+!p1@ZNF331!1.71!49.83!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.67!1153.56!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.64!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.64!42.27!KDM5D;;chr10:35416142..35416169,+!p3@CREM!1.63!106.87!CREM;;chr5:133450365..133450444,+!p1@TCF7!1.62!176.62!TCF7;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.98!STAT4;;chr20:50159198..50159299,-!p1@NFATC2!1.53!47.76!NFATC2;;chr6:106546808..106546833,+!p3@PRDM1!1.53!40.89!PRDM1;;chr3:71542615..71542644,-!p12@FOXP1!1.51!31.27!FOXP1;;chr19:45971246..45971265,+!p1@FOSB!1.47!508.91!FOSB;;chr17:37934365..37934387,-!p2@IKZF3!1.47!28.52!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!1.45!27.15!ARID5A;;chr19:54041669..54041697,+!p2@ZNF331!1.44!26.80!ZNF331;;chr17:45810594..45810608,+!p1@TBX21!1.43!25.77!TBX21;;chr2:157189180..157189290,-!p1@NR4A2!1.42!126.80!NR4A2;;chr15:60884706..60884743,-!p1@RORA!1.41!125.08!RORA;;chr5:133451347..133451358,+!p3@TCF7!1.40!24.05!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.39!62.54!AKNA;;chr20:56195474..56195506,-!p1@ZBP1!1.38!23.02!ZBP1;;chr17:38497662..38497713,+!p4@RARA!1.37!26.12!RARA;;chr10:35484090..35484104,+!p6@CREM!1.37!22.34!CREM;;chr7:50344251..50344288,+!p3@IKZF1!1.37!22.34!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!1.35!58.76!ZNF101;;chr2:231090471..231090504,+!p2@SP140!1.35!21.30!SP140;;chr17:37934204..37934241,-!p3@IKZF3!1.33!20.27!IKZF3;;chr14:64970670..64970712,-!p3@ZBTB25!1.32!42.61!ZBTB25;;chr2:208394817..208394834,+!p3@CREB1!1.31!75.94!CREB1;;chr2:192015750..192015793,-!p2@STAT4!1.31!26.12!STAT4;;chr21:36421535..36421610,-!p2@RUNX1!1.29!64.26!RUNX1;;chr14:75745523..75745537,+!p1@FOS!1.28!2108.84!FOS;;chr3:71542684..71542720,-!p18@FOXP1!1.28!18.21!FOXP1;;chr16:79634624..79634642,-!p1@MAF!1.27!67.69!MAF;;chr10:3824332..3824425,-!p4@KLF6!1.27!28.52!KLF6;;chr3:71542651..71542683,-!p22@FOXP1!1.27!17.52!FOXP1;;chr11:128392273..128392308,-!p2@ETS1!1.26!71.82!ETS1;;chr3:71355163..71355209,-!p5@FOXP1!1.26!23.71!FOXP1;;chr14:75988771..75988826,+!p1@BATF!1.26!23.02!BATF;;chr19:12902289..12902307,+!p1@JUNB!1.25!3720.45!JUNB;;chr7:50343895..50343936,+!p5@IKZF1!1.25!16.84!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.22!15.46!EOMES;;chr6:391743..391759,+!p1@IRF4!1.20!14.78!IRF4;;chr14:64971288..64971316,-!p2@ZBTB25!1.19!43.98!ZBTB25;;chr19:45972701..45972774,+!p2@FOSB!1.17!18.90!FOSB;;chr12:72056800..72056834,+!p1@THAP2!1.17!18.56!THAP2;;chr3:18486354..18486377,-!p2@SATB1!1.16!16.84!SATB1;;chr13:74707894..74707947,-!p6@KLF12!1.16!15.12!KLF12;;chr10:35416172..35416184,+!p13@CREM!1.16!13.40!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.16!13.40!PRDM1;;chr11:128392085..128392232,-!p1@ETS1!1.15!436.75!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.15!82.81!ELF1;;chr8:123793988..123794016,+!p1@ZHX2!1.15!23.37!ZHX2;;chr8:81397846..81397860,+!p3@ZBTB10!1.15!16.49!ZBTB10;;chr10:35416125..35416138,+!p10@CREM!1.15!15.46!CREM;;chr10:8096772..8096787,+!p2@GATA3!1.15!15.46!GATA3;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.15!PBX4;;chr9:102584262..102584276,+!p1@NR4A3!1.13!28.18!NR4A3;;chr17:38020392..38020477,-!p1@IKZF3!1.13!12.37!IKZF3;;chr16:3313791..3313834,+!p2@ZNF263!1.12!27.15!ZNF263;;chr6:91006575..91006602,-!p2@BACH2!1.11!17.52!BACH2;;chr2:68592406..68592424,+!p1@PLEK!1.11!12.03!PLEK;;chr3:39195075..39195088,-!p1@CSRNP1!1.10!72.16!CSRNP1;;chr8:60031619..60031676,-!p1@TOX!1.10!25.43!TOX;;chr4:109090075..109090095,-!p2@LEF1!1.10!11.68!LEF1;;chr16:79634595..79634620,-!p2@MAF!1.09!20.62!MAF;;chr20:56195525..56195556,-!p2@ZBP1!1.09!11.34!ZBP1;;chr5:142814241..142814278,-!p12@NR3C1!1.09!11.34!NR3C1;;chr2:97202480..97202499,+!p1@ARID5A!1.08!113.40!ARID5A;;chr3:23986824..23986848,+!p2@NR1D2!1.08!62.54!NR1D2;;chr16:79633894..79633954,-!p3@MAF!1.07!20.62!MAF;;chr7:50344289..50344323,+!p1@IKZF1!1.07!10.65!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.05!BACH2;;chr3:71179699..71179744,-!p2@FOXP1!1.05!78.00!FOXP1;;chr6:152011654..152011682,+!p1@ESR1!1.05!10.31!ESR1;;chr4:38665769..38665801,+!p2@KLF3!1.04!91.06!KLF3;;chr17:37934280..37934299,-!p6@IKZF3!1.04!9.97!IKZF3;;chr8:81397820..81397836,+!p2@ZBTB10!1.03!12.37!ZBTB10;;chr10:8096631..8096660,+!p1@GATA3!1.03!11.68!GATA3;;chr10:35416223..35416234,+!p12@CREM!1.03!9.62!CREM;;chr11:85375237..85375277,-!p4@CREBZF!1.01!10.65!CREBZF;;chr2:192015677..192015691,-!p3@STAT4!1.01!9.28!STAT4;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.28!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.00!110.30!FLI1;;chr10:104154246..104154347,+!p3@NFKB2!1.00!56.35!NFKB2;;chr9:114287433..114287513,+!p1@ZNF483!1.00!23.71!ZNF483;;chr16:88752889..88752921,-!p1@SNAI3!1.00!10.65!SNAI3;;chr4:109089901..109089930,-!p3@LEF1!1.00!8.93!LEF1;;chr19:54041645..54041661,+!p5@ZNF331!1.00!8.93!ZNF331;;chrX:49121165..49121179,-!p1@FOXP3!1.00!8.93!FOXP3;;chr4:81104895..81104920,+!p2@PRDM8!0.98!13.06!PRDM8;;chr19:16435523..16435619,+!p2@KLF2!0.98!12.03!KLF2;;chr6:106546786..106546802,+!p6@PRDM1!0.98!8.59!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.59!ZFY;;chr11:67007548..67007610,+!p3@KDM2A!0.97!63.91!KDM2A;;chr3:63898321..63898396,+!p3@ATXN7!0.97!19.59!ATXN7;;chr1:45805693..45805718,+!p3@TOE1!0.97!18.21!TOE1;;chr19:54040550..54040594,+!p20@ZNF331!0.97!8.25!ZNF331;;chr6:106546731..106546755,+!p5@PRDM1!0.97!8.25!PRDM1;;chr5:131826457..131826514,-!p1@IRF1!0.96!327.13!IRF1;;chr20:44600199..44600219,-!p3@ZNF335!0.96!11.00!ZNF335;;chr14:75746722..75746777,+!p2@FOS!0.96!10.65!FOS;;chr6:12009042..12009092,+!p6@HIVEP1!0.96!10.65!HIVEP1;;chr13:74708246..74708264,-!p8@KLF12!0.95!8.93!KLF12;;chr10:135121763..135121783,+!p5@ZNF511!0.95!7.90!ZNF511;;chr4:109088089..109088101,-!p11@LEF1!0.95!7.90!LEF1;;chr4:109089573..109089585,-!p8@LEF1!0.95!7.90!LEF1;;chr19:12444440..12444455,-!p1@ZNF563!0.94!13.75!ZNF563;;chr12:72056773..72056796,+!p3@THAP2!0.93!9.97!THAP2;;chr10:35485013..35485034,+!p15@CREM!0.93!7.56!CREM;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.56!CREB3L2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!42.95!ZNF10;;chrX:106960180..106960197,-!p2@TSC22D3!0.92!29.21!TSC22D3;;chr11:128392309..128392350,-!p3@ETS1!0.92!17.87!ETS1;;chr2:157199008..157199023,-!p3@NR4A2!0.92!15.81!NR4A2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.91!788.28!ZFP36L2;;chrX:106960221..106960236,-!p3@TSC22D3!0.91!20.62!TSC22D3;;chr18:77155922..77155939,+!p1@NFATC1!0.91!20.27!NFATC1;;chr9:102584241..102584261,+!p4@NR4A3!0.91!11.34!NR4A3;;chr1:59250262..59250296,-!p5@JUN!0.91!7.22!JUN;;chrX:101186981..101187030,-!p1@ZMAT1!0.90!23.37!ZMAT1;;chr13:74708029..74708077,-!p2@KLF12!0.90!20.62!KLF12;;chr19:54041603..54041615,+!p10@ZNF331!0.90!6.87!ZNF331;;chr19:54058108..54058119,+!p19@ZNF331!0.90!6.87!ZNF331;;chr19:18392422..18392440,-!p1@JUND!0.89!991.37!JUND;;chr7:104654690..104654704,+!p2@MLL5!0.89!13.75!MLL5;;chr4:57522166..57522260,-!p2@HOPX!0.89!7.90!HOPX;;chr2:208031542..208031595,-!p2@KLF7!0.88!48.45!KLF7;;chr7:77428066..77428132,+!p2@PHTF2!0.88!45.02!PHTF2;;chr8:81397876..81397898,+!p5@ZBTB10!0.88!7.90!ZBTB10;;chr8:41909982..41910009,-!p2@KAT6A!0.88!7.56!KAT6A;;chr4:57522674..57522699,-!p5@HOPX!0.88!6.53!HOPX;;chr14:75988831..75988847,+!p2@BATF!0.88!6.53!BATF;;chr14:99738138..99738163,-!p1@BCL11B!0.88!6.53!BCL11B;;chr9:32550965..32551031,-!p4@TOPORS!0.87!10.31!TOPORS;;chr18:46475696..46475713,-!p1@SMAD7!0.87!7.22!SMAD7;;chr8:60031563..60031574,-!p7@TOX!0.86!6.19!TOX;;chr15:60884747..60884774,-!p3@RORA!0.85!15.46!RORA;;chr20:51588873..51588953,+!p1@TSHZ2!0.85!8.25!TSHZ2;;chr19:52674696..52674758,-!p1@ZNF836!0.84!18.56!ZNF836;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.68!ZNF276;;chr17:38020557..38020572,-!p4@IKZF3!0.84!5.84!IKZF3;;chr19:54041574..54041589,+!p6@ZNF331!0.84!5.84!ZNF331;;chr20:52226313..52226350,-!p3@ZNF217!0.84!5.84!ZNF217;;chr7:50348268..50348366,+!p4@IKZF1!0.84!5.84!IKZF1;;chr2:231090344..231090361,-!p3@SP110!0.84!5.84!SP110;;chr3:18487057..18487105,-!p4@SATB1!0.84!5.84!SATB1;;chr14:64971893..64971928,-!p8@ZBTB25!0.84!5.84!ZBTB25;;chr16:68119324..68119364,+!p1@NFATC3!0.83!27.49!NFATC3;;chr17:36861735..36861755,+!p4@MLLT6!0.83!10.31!MLLT6;;chr4:38665810..38665827,+!p1@KLF3!0.82!87.28!KLF3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.52!ZNF681;;chr8:67525443..67525459,-!p2@MYBL1!0.82!8.59!MYBL1;;chr19:49140609..49140643,-!p1@DBP!0.81!33.33!DBP;;chr14:65569101..65569119,-!p3@MAX!0.81!18.56!MAX;;chr11:111249993..111250006,-!p1@POU2AF1!0.81!5.50!POU2AF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.81!5.50!CREB3L2;;chr4:109088130..109088163,-!p13@LEF1!0.81!5.50!LEF1;;chr4:109088940..109089037,-!p4@LEF1!0.81!5.50!LEF1;;chr10:3827389..3827408,-!p1@KLF6!0.80!445.68!KLF6;;chr13:41240717..41240735,-!p2@FOXO1!0.80!38.83!FOXO1;;chr9:20621927..20621996,-!p3@MLLT3!0.80!9.28!MLLT3;;chr19:38085768..38085821,+!p1@ZNF540!0.80!8.25!ZNF540;;chrX:131623982..131624011,-!p6@MBNL3!0.80!7.90!MBNL3;;chr5:172483347..172483407,+!p1@C5orf41!0.79!41.92!CREBRF;;chr19:12721790..12721810,+!p2@ZNF791!0.79!15.12!ZNF791;;chr9:3526360..3526421,-!p5@RFX3!0.79!9.97!RFX3;;chrX:106960249..106960260,-!p5@TSC22D3!0.79!8.59!TSC22D3;;chr7:104654718..104654741,+!p3@MLL5!0.79!7.90!MLL5;;chr1:41827095..41827155,+!p1@FOXO6!0.79!7.22!FOXO6;;chr20:51589835..51589848,+!p5@TSHZ2!0.79!5.15!TSHZ2;;chr21:36421347..36421380,-!p8@RUNX1!0.79!5.15!RUNX1;;chr7:50344144..50344157,+!p6@IKZF1!0.79!5.15!IKZF1;;chrY:21906623..21906637,-!p3@KDM5D!0.79!5.15!KDM5D;;chrY:21906761..21906810,-!p2@KDM5D!0.79!5.15!KDM5D;;chr2:100759037..100759058,-!p2@AFF3!0.79!5.15!AFF3;;chr2:157189617..157189667,-!p4@NR4A2!0.79!5.15!NR4A2;;chr2:68592394..68592405,+!p2@PLEK!0.79!5.15!PLEK;;chr19:47616992..47617011,-!p4@ZC3H4!0.78!11.34!ZC3H4;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011121,FF:11798-124C7
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25-CD45RA-%2520memory%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13237.11798-124C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11798-124C7
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13237
+|library_id_phase_based=2:CNhs13237
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11798
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11798
 |name=CD4+CD25-CD45RA- memory conventional T cells, donor2
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13237,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=0.787
 |sample_age=23
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11798-124C7;search_select_hide=table117:FF:11798-124C7
 }}

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Latest revision as of 18:21, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0