FF:11796-124C5: Difference between revisions

Latest revision as of 18:21, 4 June 2020

Name:	CD4+CD25+CD45RA+ naive regulatory T cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13235
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	21
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005102

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13235		CAGE		DRX008061		DRR008933

Accession ID Hg19

Library id		BAM		CTSS
CNhs13235		DRZ000358		DRZ001743

Accession ID Hg38

Library id		BAM		CTSS
CNhs13235		DRZ011708		DRZ013093

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.584
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.289
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.527
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.168
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.289
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.748
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.432
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.882
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.291
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.168
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.527
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.882
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.168
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.23
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.49
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.289
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.168
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.855
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.55
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.882
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.635
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.595
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.509
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.882
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.886
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.289
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13235

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.78023e-4
MA0003.1	MA0003.1	0.559
MA0004.1	MA0004.1	0.53
MA0006.1	MA0006.1	0.0515
MA0007.1	MA0007.1	0.977
MA0009.1	MA0009.1	0.287
MA0014.1	MA0014.1	0.372
MA0017.1	MA0017.1	0.583
MA0018.2	MA0018.2	5.8688e-9
MA0019.1	MA0019.1	0.68
MA0024.1	MA0024.1	0.659
MA0025.1	MA0025.1	0.203
MA0027.1	MA0027.1	0.34
MA0028.1	MA0028.1	6.4926e-7
MA0029.1	MA0029.1	0.568
MA0030.1	MA0030.1	0.00335
MA0031.1	MA0031.1	2.13902e-5
MA0035.2	MA0035.2	0.151
MA0038.1	MA0038.1	0.31
MA0039.2	MA0039.2	0.821
MA0040.1	MA0040.1	0.996
MA0041.1	MA0041.1	0.419
MA0042.1	MA0042.1	0.878
MA0043.1	MA0043.1	0.0042
MA0046.1	MA0046.1	0.558
MA0047.2	MA0047.2	0.0638
MA0048.1	MA0048.1	0.824
MA0050.1	MA0050.1	1.77361e-4
MA0051.1	MA0051.1	0.0262
MA0052.1	MA0052.1	0.028
MA0055.1	MA0055.1	0.264
MA0057.1	MA0057.1	0.544
MA0058.1	MA0058.1	0.459
MA0059.1	MA0059.1	0.412
MA0060.1	MA0060.1	0.689
MA0061.1	MA0061.1	0.0817
MA0062.2	MA0062.2	3.30555e-19
MA0065.2	MA0065.2	0.193
MA0066.1	MA0066.1	0.417
MA0067.1	MA0067.1	0.0187
MA0068.1	MA0068.1	0.826
MA0069.1	MA0069.1	0.802
MA0070.1	MA0070.1	0.819
MA0071.1	MA0071.1	0.864
MA0072.1	MA0072.1	0.317
MA0073.1	MA0073.1	0.977
MA0074.1	MA0074.1	0.173
MA0076.1	MA0076.1	3.15179e-10
MA0077.1	MA0077.1	0.0122
MA0078.1	MA0078.1	0.9
MA0079.2	MA0079.2	0.372
MA0080.2	MA0080.2	1.71574e-9
MA0081.1	MA0081.1	0.00893
MA0083.1	MA0083.1	0.0232
MA0084.1	MA0084.1	0.227
MA0087.1	MA0087.1	0.813
MA0088.1	MA0088.1	0.239
MA0090.1	MA0090.1	6.68858e-4
MA0091.1	MA0091.1	0.55
MA0092.1	MA0092.1	0.904
MA0093.1	MA0093.1	0.6
MA0099.2	MA0099.2	4.44753e-5
MA0100.1	MA0100.1	0.575
MA0101.1	MA0101.1	0.969
MA0102.2	MA0102.2	0.404
MA0103.1	MA0103.1	0.155
MA0104.2	MA0104.2	0.0573
MA0105.1	MA0105.1	0.00152
MA0106.1	MA0106.1	0.228
MA0107.1	MA0107.1	0.754
MA0108.2	MA0108.2	1.47548e-6
MA0111.1	MA0111.1	0.386
MA0112.2	MA0112.2	0.799
MA0113.1	MA0113.1	0.863
MA0114.1	MA0114.1	0.658
MA0115.1	MA0115.1	0.857
MA0116.1	MA0116.1	0.00622
MA0117.1	MA0117.1	0.0608
MA0119.1	MA0119.1	0.423
MA0122.1	MA0122.1	0.41
MA0124.1	MA0124.1	0.465
MA0125.1	MA0125.1	0.105
MA0131.1	MA0131.1	0.0614
MA0135.1	MA0135.1	0.219
MA0136.1	MA0136.1	3.33608e-21
MA0137.2	MA0137.2	0.684
MA0138.2	MA0138.2	0.321
MA0139.1	MA0139.1	0.0949
MA0140.1	MA0140.1	0.172
MA0141.1	MA0141.1	0.48
MA0142.1	MA0142.1	0.138
MA0143.1	MA0143.1	0.215
MA0144.1	MA0144.1	0.69
MA0145.1	MA0145.1	0.0549
MA0146.1	MA0146.1	0.602
MA0147.1	MA0147.1	0.0619
MA0148.1	MA0148.1	0.196
MA0149.1	MA0149.1	0.151
MA0150.1	MA0150.1	0.311
MA0152.1	MA0152.1	0.0179
MA0153.1	MA0153.1	0.356
MA0154.1	MA0154.1	0.378
MA0155.1	MA0155.1	0.329
MA0156.1	MA0156.1	8.1356e-19
MA0157.1	MA0157.1	8.34363e-5
MA0159.1	MA0159.1	0.44
MA0160.1	MA0160.1	0.944
MA0162.1	MA0162.1	0.432
MA0163.1	MA0163.1	3.18303e-6
MA0164.1	MA0164.1	0.639
MA0258.1	MA0258.1	0.703
MA0259.1	MA0259.1	0.0898

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13235

Novel motif	Logo	P-value
1	1	0.466
10	10	0.0143
100	100	0.472
101	101	0.226
102	102	0.918
103	103	0.624
104	104	0.815
105	105	0.289
106	106	0.962
107	107	0.00273
108	108	0.503
109	109	0.185
11	11	0.28
110	110	0.802
111	111	0.828
112	112	0.952
113	113	0.609
114	114	0.595
115	115	0.194
116	116	0.159
117	117	0.00229
118	118	0.229
119	119	0.303
12	12	0.726
120	120	0.939
121	121	0.862
122	122	0.77
123	123	0.00466
124	124	0.593
125	125	0.249
126	126	0.758
127	127	0.768
128	128	0.291
129	129	0.936
13	13	0.455
130	130	0.524
131	131	0.501
132	132	0.367
133	133	0.652
134	134	0.652
135	135	0.945
136	136	0.919
137	137	0.115
138	138	0.482
139	139	0.0596
14	14	0.67
140	140	0.184
141	141	0.623
142	142	0.217
143	143	0.0123
144	144	0.807
145	145	0.656
146	146	0.589
147	147	0.0184
148	148	0.343
149	149	0.406
15	15	0.223
150	150	0.911
151	151	0.657
152	152	0.235
153	153	0.68
154	154	0.466
155	155	0.0127
156	156	0.895
157	157	0.47
158	158	0.00352
159	159	0.463
16	16	0.512
160	160	0.455
161	161	0.99
162	162	0.0374
163	163	0.36
164	164	0.121
165	165	0.826
166	166	0.245
167	167	0.139
168	168	0.754
169	169	0.309
17	17	0.6
18	18	0.708
19	19	0.0923
2	2	0.351
20	20	0.221
21	21	0.699
22	22	0.451
23	23	0.385
24	24	0.573
25	25	0.0833
26	26	0.754
27	27	0.755
28	28	0.594
29	29	0.0199
3	3	0.273
30	30	0.127
31	31	0.631
32	32	0.0441
33	33	0.138
34	34	0.344
35	35	0.302
36	36	0.0187
37	37	0.306
38	38	0.934
39	39	0.261
4	4	0.964
40	40	0.47
41	41	0.107
42	42	0.184
43	43	0.513
44	44	0.983
45	45	0.209
46	46	0.628
47	47	0.225
48	48	0.451
49	49	0.195
5	5	0.483
50	50	0.537
51	51	0.957
52	52	0.256
53	53	0.544
54	54	0.932
55	55	0.767
56	56	0.914
57	57	0.75
58	58	0.113
59	59	0.668
6	6	0.929
60	60	0.76
61	61	0.0748
62	62	0.144
63	63	0.981
64	64	0.567
65	65	0.788
66	66	0.846
67	67	0.91
68	68	0.436
69	69	0.549
7	7	0.351
70	70	0.154
71	71	0.115
72	72	0.15
73	73	0.822
74	74	0.54
75	75	0.0065
76	76	0.0649
77	77	0.0223
78	78	0.301
79	79	0.475
8	8	0.485
80	80	0.0118
81	81	0.561
82	82	0.253
83	83	0.771
84	84	0.555
85	85	0.332
86	86	0.206
87	87	0.573
88	88	0.997
89	89	0.0734
9	9	0.979
90	90	0.151
91	91	0.856
92	92	0.967
93	93	0.74
94	94	0.269
95	95	0.00981
96	96	0.619
97	97	0.273
98	98	0.28
99	99	1.07317e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13235

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007954
+|DRA_sample_Accession=CAGE@SAMD00005102
-|accession_numbers=CAGE;DRX008061;DRR008933;DRZ000358;DRZ001743
+|accession_numbers=CAGE;DRX008061;DRR008933;DRZ000358;DRZ001743;DRZ011708;DRZ013093
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.30!196.48!FOXP3;;chr3:71355163..71355209,-!p5@FOXP1!2.17!198.37!FOXP1;;chr3:63953435..63953499,+!p1@ATXN7!2.00!99.42!ATXN7;;chr5:133451294..133451310,+!p2@TCF7!1.89!76.70!TCF7;;chr4:109087445..109087463,-!p1@LEF1!1.85!69.60!LEF1;;chr3:71542615..71542644,-!p12@FOXP1!1.81!63.92!FOXP1;;chr19:54058073..54058088,+!p1@ZNF331!1.80!62.02!ZNF331;;chr4:109090075..109090095,-!p2@LEF1!1.77!57.76!LEF1;;chr19:16435625..16435682,+!p1@KLF2!1.72!1549.12!KLF2;;chr1:25256756..25256774,-!p1@RUNX3!1.72!94.22!RUNX3;;chr19:19779619..19779670,+!p1@ZNF101!1.71!136.35!ZNF101;;chr19:54041669..54041697,+!p2@ZNF331!1.70!49.24!ZNF331;;chr7:50343634..50343717,+!p2@IKZF1!1.69!47.82!IKZF1;;chrX:106960285..106960299,-!p1@TSC22D3!1.66!1127.28!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.66!44.98!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.63!41.66!SP140;;chr5:133450365..133450444,+!p1@TCF7!1.60!171.39!TCF7;;chr6:91006518..91006570,-!p1@BACH2!1.57!81.43!BACH2;;chr10:35484053..35484076,+!p1@CREM!1.56!84.75!CREM;;chr2:157189180..157189290,-!p1@NR4A2!1.53!164.29!NR4A2;;chr10:35416142..35416169,+!p3@CREM!1.52!82.38!CREM;;chr17:38497662..38497713,+!p4@RARA!1.51!36.46!RARA;;chr6:391743..391759,+!p1@IRF4!1.51!31.25!IRF4;;chr2:97202991..97203043,+!p3@ARID5A!1.51!31.25!ARID5A;;chr4:109089901..109089930,-!p3@LEF1!1.47!28.41!LEF1;;chr5:133451347..133451358,+!p3@TCF7!1.45!26.99!TCF7;;chr3:18486354..18486377,-!p2@SATB1!1.44!32.67!SATB1;;chr17:37934365..37934387,-!p2@IKZF3!1.44!26.51!IKZF3;;chr9:3525727..3525828,-!p2@RFX3!1.43!64.39!RFX3;;chr3:71542651..71542683,-!p22@FOXP1!1.38!22.73!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.38!22.73!IKZF1;;chr2:100759010..100759035,-!p1@AFF3!1.37!22.25!AFF3;;chr4:109089573..109089585,-!p8@LEF1!1.37!22.25!LEF1;;chr14:64971288..64971316,-!p2@ZBTB25!1.36!65.81!ZBTB25;;chr16:3313791..3313834,+!p2@ZNF263!1.35!46.40!ZNF263;;chr14:64970670..64970712,-!p3@ZBTB25!1.35!45.45!ZBTB25;;chr8:81397846..81397860,+!p3@ZBTB10!1.35!26.99!ZBTB10;;chr2:100759037..100759058,-!p2@AFF3!1.35!21.31!AFF3;;chr3:71542684..71542720,-!p18@FOXP1!1.35!21.31!FOXP1;;chr19:12902289..12902307,+!p1@JUNB!1.34!4616.12!JUNB;;chr6:91006575..91006602,-!p2@BACH2!1.32!29.35!BACH2;;chr3:71353892..71353928,-!p31@FOXP1!1.31!19.41!FOXP1;;chr11:128392273..128392308,-!p2@ETS1!1.30!79.07!ETS1;;chr3:18480217..18480239,-!p3@SATB1!1.30!18.94!SATB1;;chr10:35416223..35416234,+!p12@CREM!1.28!17.99!CREM;;chr19:54041645..54041661,+!p5@ZNF331!1.27!17.52!ZNF331;;chr7:50344251..50344288,+!p3@IKZF1!1.26!17.04!IKZF1;;chr21:36421535..36421610,-!p2@RUNX1!1.24!57.29!RUNX1;;chr9:114287433..114287513,+!p1@ZNF483!1.23!40.72!ZNF483;;chr6:91006503..91006517,-!p3@BACH2!1.23!16.10!BACH2;;chr4:38665769..38665801,+!p2@KLF3!1.22!137.77!KLF3;;chr9:117150254..117150271,-!p1@AKNA!1.22!42.14!AKNA;;chr2:214017168..214017189,-!p8@IKZF2!1.22!15.62!IKZF2;;chr15:60884706..60884743,-!p1@RORA!1.21!78.59!RORA;;chr19:12444440..12444455,-!p1@ZNF563!1.21!26.04!ZNF563;;chr8:81397876..81397898,+!p5@ZBTB10!1.21!17.99!ZBTB10;;chr19:19779686..19779697,+!p3@ZNF101!1.20!17.04!ZNF101;;chr10:35416172..35416184,+!p13@CREM!1.20!14.68!CREM;;chr2:97202480..97202499,+!p1@ARID5A!1.19!143.93!ARID5A;;chr14:75988771..75988826,+!p1@BATF!1.18!18.94!BATF;;chr10:35485013..35485034,+!p15@CREM!1.18!14.20!CREM;;chr2:231090471..231090504,+!p2@SP140!1.17!13.73!SP140;;chr4:109088130..109088163,-!p13@LEF1!1.17!13.73!LEF1;;chr11:128392085..128392232,-!p1@ETS1!1.16!446.46!ETS1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.16!75.75!ZNF10;;chr1:45805693..45805718,+!p3@TOE1!1.15!27.93!TOE1;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.46!PBX4;;chr6:106546808..106546833,+!p3@PRDM1!1.14!16.10!PRDM1;;chr3:71542747..71542766,-!p34@FOXP1!1.14!12.78!FOXP1;;chr4:109088089..109088101,-!p11@LEF1!1.14!12.78!LEF1;;chr13:41240717..41240735,-!p2@FOXO1!1.13!85.69!FOXO1;;chr19:45972701..45972774,+!p2@FOSB!1.13!17.04!FOSB;;chr13:41593425..41593480,-!p1@ELF1!1.12!78.12!ELF1;;chr2:214016254..214016282,-!p7@IKZF2!1.12!12.31!IKZF2;;chr4:109088940..109089037,-!p4@LEF1!1.11!11.84!LEF1;;chr2:192015750..192015793,-!p2@STAT4!1.10!15.62!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.09!11.36!ZBP1;;chr8:81397820..81397836,+!p2@ZBTB10!1.08!13.73!ZBTB10;;chr14:99738138..99738163,-!p1@BCL11B!1.08!10.89!BCL11B;;chr20:50159198..50159299,-!p1@NFATC2!1.07!15.62!NFATC2;;chr12:72056800..72056834,+!p1@THAP2!1.07!14.68!THAP2;;chr2:208394817..208394834,+!p3@CREB1!1.06!43.08!CREB1;;chr3:18487057..18487105,-!p4@SATB1!1.06!10.42!SATB1;;chr19:54040550..54040594,+!p20@ZNF331!1.06!10.42!ZNF331;;chr17:56565257..56565283,-!p2@HSF5!1.04!9.94!HSF5;;chr3:71542827..71542838,-!p53@FOXP1!1.04!9.94!FOXP1;;chr6:12009042..12009092,+!p6@HIVEP1!1.03!12.78!HIVEP1;;chr13:74707894..74707947,-!p6@KLF12!1.03!10.89!KLF12;;chr7:99097863..99097936,-!p1@ZNF394!1.02!97.06!ZNF394;;chr8:60031619..60031676,-!p1@TOX!1.02!20.83!TOX;;chr8:123793988..123794016,+!p1@ZHX2!1.02!17.04!ZHX2;;chr4:109086403..109086421,-!p19@LEF1!1.02!9.47!LEF1;;chr3:39195075..39195088,-!p1@CSRNP1!1.01!58.71!CSRNP1;;chr3:23986824..23986848,+!p2@NR1D2!1.01!53.03!NR1D2;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.30!ZMAT1;;chr19:19843900..19843928,-!p1@ZNF14!1.00!45.45!ZNF14;;chr19:16435523..16435619,+!p2@KLF2!1.00!12.78!KLF2;;chr13:41240737..41240787,-!p1@FOXO1!0.99!106.53!FOXO1;;chr19:38085768..38085821,+!p1@ZNF540!0.99!13.26!ZNF540;;chr2:192015701..192015743,-!p1@STAT4!0.99!12.31!STAT4;;chr9:20621927..20621996,-!p3@MLLT3!0.98!14.68!MLLT3;;chr2:214015343..214015366,-!p3@IKZF2!0.98!8.52!IKZF2;;chr3:63898321..63898396,+!p3@ATXN7!0.97!19.41!ATXN7;;chr10:8096772..8096787,+!p2@GATA3!0.97!9.94!GATA3;;chr10:35484090..35484104,+!p6@CREM!0.96!8.05!CREM;;chr3:18480173..18480189,-!p6@SATB1!0.96!8.05!SATB1;;chr4:38665810..38665827,+!p1@KLF3!0.95!119.78!KLF3;;chr9:102584262..102584276,+!p1@NR4A3!0.95!17.99!NR4A3;;chr19:49140609..49140643,-!p1@DBP!0.94!44.98!DBP;;chr14:65569101..65569119,-!p3@MAX!0.93!24.62!MAX;;chr5:142814241..142814278,-!p12@NR3C1!0.93!7.58!NR3C1;;chr19:12444399..12444415,-!p5@ZNF563!0.93!7.58!ZNF563;;chr19:38085739..38085762,+!p3@ZNF540!0.93!7.58!ZNF540;;chr4:109087906..109087928,-!p12@LEF1!0.93!7.58!LEF1;;chrY:2803415..2803468,+!p1@ZFY!0.93!7.58!ZFY;;chr2:157198916..157198978,-!p2@NR4A2!0.92!26.51!NR4A2;;chr9:20622444..20622468,-!p2@MLLT3!0.91!24.15!MLLT3;;chr19:52674696..52674758,-!p1@ZNF836!0.91!21.78!ZNF836;;chr15:60884747..60884774,-!p3@RORA!0.91!17.99!RORA;;chr17:46621311..46621332,-!p8@HOXB2!0.91!9.47!HOXB2;;chr10:35416125..35416138,+!p10@CREM!0.91!8.52!CREM;;chr19:16435423..16435484,+!p5@KLF2!0.91!7.10!KLF2;;chr9:20620829..20620848,-!p7@MLLT3!0.91!7.10!MLLT3;;chr4:109086281..109086319,-!p9@LEF1!0.91!7.10!LEF1;;chr5:131826457..131826514,-!p1@IRF1!0.90!285.96!IRF1;;chr5:172483347..172483407,+!p1@C5orf41!0.90!54.45!CREBRF;;chr9:73028814..73028895,-!p1@KLF9!0.89!70.07!KLF9;;chr2:208031542..208031595,-!p2@KLF7!0.89!49.71!KLF7;;chr18:77155922..77155939,+!p1@NFATC1!0.89!19.41!NFATC1;;chr12:72056773..72056796,+!p3@THAP2!0.89!9.00!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.88!357.93!NFKBIZ;;chr19:20748574..20748599,-!p1@ZNF737!0.88!41.19!ZNF737;;chr9:73028332..73028385,-!p3@KLF9!0.88!23.67!KLF9;;chr7:108209925..108209941,-!p2@THAP5!0.88!6.63!THAP5;;chr7:50348268..50348366,+!p4@IKZF1!0.88!6.63!IKZF1;;chr19:54041603..54041615,+!p10@ZNF331!0.88!6.63!ZNF331;;chr20:56195525..56195556,-!p2@ZBP1!0.88!6.63!ZBP1;;chr3:71179699..71179744,-!p2@FOXP1!0.87!51.13!FOXP1;;chrX:106960180..106960197,-!p2@TSC22D3!0.87!25.57!TSC22D3;;chr19:23941680..23941704,-!p1@ZNF681!0.87!19.41!ZNF681;;chrX:106960221..106960236,-!p3@TSC22D3!0.87!18.46!TSC22D3;;chr2:214015111..214015179,-!p1@IKZF2!0.87!11.84!IKZF2;;chr16:88519743..88519754,+!p2@ZFPM1!0.87!7.10!ZFPM1;;chr19:18392422..18392440,-!p1@JUND!0.86!909.02!JUND;;chr7:21467642..21467671,+!p2@SP4!0.86!14.68!SP4;;chr10:104154246..104154347,+!p3@NFKB2!0.85!39.30!NFKB2;;chr13:74708029..74708077,-!p2@KLF12!0.85!18.46!KLF12;;chr10:135121763..135121783,+!p5@ZNF511!0.85!6.15!ZNF511;;chr17:38020516..38020544,-!p5@IKZF3!0.85!6.15!IKZF3;;chrY:21906623..21906637,-!p3@KDM5D!0.85!6.15!KDM5D;;chr2:113033164..113033219,+!p1@ZC3H6!0.84!53.03!ZC3H6;;chr11:128392309..128392350,-!p3@ETS1!0.84!14.68!ETS1;;chr12:57914286..57914304,-!p1@DDIT3!0.83!224.41!DDIT3;;chr19:45971246..45971265,+!p1@FOSB!0.83!115.99!FOSB;;chr7:21467674..21467727,+!p1@SP4!0.83!24.62!SP4;;chr19:12405606..12405629,-!p2@ZNF44!0.82!11.36!ZNF44;;chr17:38497715..38497734,+!p8@RARA!0.82!5.68!RARA;;chr19:38085978..38085996,-!p3@ZNF571!0.82!5.68!ZNF571;;chr19:54041574..54041589,+!p6@ZNF331!0.82!5.68!ZNF331;;chr11:128331703..128331717,-!p8@ETS1!0.82!5.68!ETS1;;chr2:231090344..231090361,-!p3@SP110!0.82!5.68!SP110;;chr2:61108650..61108687,+!p2@REL!0.81!28.88!REL;;chr18:77160282..77160343,+!p2@NFATC1!0.80!35.98!NFATC1;;chr6:12008986..12009016,+!p3@HIVEP1!0.80!17.52!HIVEP1;;chr2:148778973..148779035,+!p3@MBD5!0.80!14.68!MBD5;;chr17:36861675..36861697,+!p3@MLLT6!0.80!13.26!MLLT6;;chr9:102584241..102584261,+!p4@NR4A3!0.80!8.52!NR4A3;;chr14:69262947..69262986,-!p3@ZFP36L1!0.80!6.63!ZFP36L1;;chr19:21512202..21512225,-!p1@ZNF708!0.79!28.41!ZNF708;;chr19:23870007..23870022,-!p2@ZNF675!0.79!17.99!ZNF675;;chr12:133707021..133707071,-!p2@ZNF891!0.79!9.00!ZNF891;;chrX:106960249..106960260,-!p5@TSC22D3!0.79!8.52!TSC22D3;;chr17:37934280..37934299,-!p6@IKZF3!0.79!5.21!IKZF3;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.21!HOXB2;;chr7:148982396..148982408,+!p4@ZNF783!0.79!5.21!ZNF783;;chr7:50344289..50344323,+!p1@IKZF1!0.79!5.21!IKZF1;;chr4:109090054..109090073,-!p7@LEF1!0.79!5.21!LEF1;;chr19:19932513..19932569,-!p1@ZNF506!0.78!102.74!ZNF506;;chr11:67007548..67007610,+!p3@KDM2A!0.78!41.19!KDM2A;;chr6:143266297..143266356,-!p1@HIVEP2!0.78!26.04!HIVEP2;;chr19:47616992..47617011,-!p4@ZC3H4!0.78!11.36!ZC3H4;;chr11:128563948..128564003,+!p1@FLI1!0.77!64.86!FLI1;;chr19:52490043..52490113,-!p1@ZNF350!0.77!42.14!ZNF350;;chr9:3525867..3525902,-!p3@RFX3!0.77!18.46!RFX3;;chr1:149858461..149858479,+!p1@BOLA1!0.76!2058.55!BOLA1;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13235.11796-124C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13235.11796-124C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13235.11796-124C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13235.11796-124C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor2.CNhs13235.11796-124C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11796-124C5
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13235
-|library_id_phase_based=1:CNhs13235
+|library_id_phase_based=2:CNhs13235
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11796
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11796
 |name=CD4+CD25+CD45RA+ naive regulatory T cells, donor2
 |namespace=
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13235,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11796-124C5;search_select_hide=table117:FF:11796-124C5
 }}

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FF:11796-124C5: Difference between revisions

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Latest revision as of 18:21, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0