FF:11795-124C4: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13205
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	19
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005585

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13205		CAGE		DRX008191		DRR009063

Accession ID Hg19

Library id		BAM		CTSS
CNhs13205		DRZ000488		DRZ001873

Accession ID Hg38

Library id		BAM		CTSS
CNhs13205		DRZ011838		DRZ013223

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.103
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.26
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.186
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.339
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.186
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.15
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.676
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.499
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.942
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.189
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.103
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.458
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.109
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.7
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.186
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.538
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.593
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.103
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.72
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.977
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.744
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.596
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.606
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.466
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.744
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.103
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.988
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.186
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13205

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.24458e-4
MA0003.1	MA0003.1	0.421
MA0004.1	MA0004.1	0.814
MA0006.1	MA0006.1	0.0933
MA0007.1	MA0007.1	0.91
MA0009.1	MA0009.1	0.471
MA0014.1	MA0014.1	0.489
MA0017.1	MA0017.1	0.931
MA0018.2	MA0018.2	1.24079e-5
MA0019.1	MA0019.1	0.635
MA0024.1	MA0024.1	0.476
MA0025.1	MA0025.1	0.955
MA0027.1	MA0027.1	0.798
MA0028.1	MA0028.1	7.94075e-6
MA0029.1	MA0029.1	0.367
MA0030.1	MA0030.1	0.0303
MA0031.1	MA0031.1	4.16603e-4
MA0035.2	MA0035.2	0.291
MA0038.1	MA0038.1	0.0676
MA0039.2	MA0039.2	0.739
MA0040.1	MA0040.1	0.384
MA0041.1	MA0041.1	0.304
MA0042.1	MA0042.1	0.835
MA0043.1	MA0043.1	0.242
MA0046.1	MA0046.1	0.428
MA0047.2	MA0047.2	0.132
MA0048.1	MA0048.1	0.724
MA0050.1	MA0050.1	2.38699e-4
MA0051.1	MA0051.1	0.0147
MA0052.1	MA0052.1	0.00756
MA0055.1	MA0055.1	0.909
MA0057.1	MA0057.1	0.55
MA0058.1	MA0058.1	0.836
MA0059.1	MA0059.1	0.667
MA0060.1	MA0060.1	0.182
MA0061.1	MA0061.1	0.434
MA0062.2	MA0062.2	1.88808e-17
MA0065.2	MA0065.2	0.354
MA0066.1	MA0066.1	0.877
MA0067.1	MA0067.1	0.189
MA0068.1	MA0068.1	0.939
MA0069.1	MA0069.1	0.9
MA0070.1	MA0070.1	0.562
MA0071.1	MA0071.1	0.886
MA0072.1	MA0072.1	0.644
MA0073.1	MA0073.1	0.943
MA0074.1	MA0074.1	0.353
MA0076.1	MA0076.1	5.66826e-9
MA0077.1	MA0077.1	0.0515
MA0078.1	MA0078.1	0.736
MA0079.2	MA0079.2	0.409
MA0080.2	MA0080.2	1.82871e-9
MA0081.1	MA0081.1	0.0167
MA0083.1	MA0083.1	0.00164
MA0084.1	MA0084.1	0.208
MA0087.1	MA0087.1	0.714
MA0088.1	MA0088.1	0.118
MA0090.1	MA0090.1	5.05082e-4
MA0091.1	MA0091.1	0.547
MA0092.1	MA0092.1	0.712
MA0093.1	MA0093.1	0.952
MA0099.2	MA0099.2	1.56356e-9
MA0100.1	MA0100.1	0.596
MA0101.1	MA0101.1	0.225
MA0102.2	MA0102.2	0.482
MA0103.1	MA0103.1	0.138
MA0104.2	MA0104.2	0.065
MA0105.1	MA0105.1	0.00943
MA0106.1	MA0106.1	0.14
MA0107.1	MA0107.1	0.124
MA0108.2	MA0108.2	1.21024e-12
MA0111.1	MA0111.1	0.169
MA0112.2	MA0112.2	0.746
MA0113.1	MA0113.1	0.656
MA0114.1	MA0114.1	0.999
MA0115.1	MA0115.1	0.859
MA0116.1	MA0116.1	0.00546
MA0117.1	MA0117.1	0.225
MA0119.1	MA0119.1	0.721
MA0122.1	MA0122.1	0.478
MA0124.1	MA0124.1	0.581
MA0125.1	MA0125.1	0.128
MA0131.1	MA0131.1	0.0575
MA0135.1	MA0135.1	0.183
MA0136.1	MA0136.1	7.79893e-21
MA0137.2	MA0137.2	0.831
MA0138.2	MA0138.2	0.212
MA0139.1	MA0139.1	0.1
MA0140.1	MA0140.1	0.252
MA0141.1	MA0141.1	0.302
MA0142.1	MA0142.1	0.0902
MA0143.1	MA0143.1	0.181
MA0144.1	MA0144.1	0.597
MA0145.1	MA0145.1	0.0446
MA0146.1	MA0146.1	0.69
MA0147.1	MA0147.1	0.0838
MA0148.1	MA0148.1	0.383
MA0149.1	MA0149.1	0.188
MA0150.1	MA0150.1	0.0294
MA0152.1	MA0152.1	0.00584
MA0153.1	MA0153.1	0.612
MA0154.1	MA0154.1	0.42
MA0155.1	MA0155.1	0.297
MA0156.1	MA0156.1	1.93967e-19
MA0157.1	MA0157.1	3.38371e-4
MA0159.1	MA0159.1	0.541
MA0160.1	MA0160.1	0.515
MA0162.1	MA0162.1	0.308
MA0163.1	MA0163.1	4.20868e-6
MA0164.1	MA0164.1	0.942
MA0258.1	MA0258.1	0.766
MA0259.1	MA0259.1	0.118

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13205

Novel motif	Logo	P-value
1	1	0.432
10	10	0.0133
100	100	0.478
101	101	0.172
102	102	0.896
103	103	0.701
104	104	0.941
105	105	0.568
106	106	0.826
107	107	0.00296
108	108	0.4
109	109	0.311
11	11	0.3
110	110	0.947
111	111	0.528
112	112	0.85
113	113	0.427
114	114	0.507
115	115	0.112
116	116	0.331
117	117	0.002
118	118	0.281
119	119	0.233
12	12	0.708
120	120	0.873
121	121	0.848
122	122	0.936
123	123	4.11276e-5
124	124	0.403
125	125	0.78
126	126	0.801
127	127	0.84
128	128	0.535
129	129	0.556
13	13	0.644
130	130	0.366
131	131	0.287
132	132	0.568
133	133	0.533
134	134	0.411
135	135	0.923
136	136	0.729
137	137	0.0711
138	138	0.304
139	139	0.061
14	14	0.653
140	140	0.158
141	141	0.463
142	142	0.278
143	143	0.026
144	144	0.753
145	145	0.841
146	146	0.675
147	147	0.011
148	148	0.468
149	149	0.369
15	15	0.288
150	150	0.945
151	151	0.623
152	152	0.16
153	153	0.791
154	154	0.303
155	155	0.0271
156	156	0.909
157	157	0.324
158	158	0.0191
159	159	0.448
16	16	0.418
160	160	0.414
161	161	0.591
162	162	0.174
163	163	0.481
164	164	0.0935
165	165	0.657
166	166	0.481
167	167	0.0537
168	168	0.939
169	169	0.188
17	17	0.495
18	18	0.632
19	19	0.0686
2	2	0.345
20	20	0.426
21	21	0.533
22	22	0.348
23	23	0.207
24	24	0.636
25	25	0.0986
26	26	0.849
27	27	0.548
28	28	0.621
29	29	0.0221
3	3	0.143
30	30	0.0929
31	31	0.662
32	32	0.0214
33	33	0.218
34	34	0.321
35	35	0.139
36	36	0.0237
37	37	0.355
38	38	0.854
39	39	0.207
4	4	0.771
40	40	0.852
41	41	0.249
42	42	0.124
43	43	0.576
44	44	0.999
45	45	0.244
46	46	0.514
47	47	0.158
48	48	0.377
49	49	0.13
5	5	0.476
50	50	0.43
51	51	0.908
52	52	0.22
53	53	0.492
54	54	0.967
55	55	0.522
56	56	0.992
57	57	0.561
58	58	0.17
59	59	0.437
6	6	0.76
60	60	0.949
61	61	0.0721
62	62	0.2
63	63	0.916
64	64	0.587
65	65	0.558
66	66	0.64
67	67	0.74
68	68	0.414
69	69	0.986
7	7	0.462
70	70	0.035
71	71	0.147
72	72	0.173
73	73	0.715
74	74	0.593
75	75	0.0114
76	76	0.0721
77	77	0.0235
78	78	0.668
79	79	0.583
8	8	0.806
80	80	0.0325
81	81	0.314
82	82	0.251
83	83	0.766
84	84	0.618
85	85	0.377
86	86	0.314
87	87	0.648
88	88	0.942
89	89	0.0532
9	9	0.702
90	90	0.0267
91	91	0.621
92	92	0.897
93	93	0.72
94	94	0.294
95	95	0.3
96	96	0.391
97	97	0.358
98	98	0.199
99	99	0.00114

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13205

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005585
+|accession_numbers=CAGE;DRX008191;DRR009063;DRZ000488;DRZ001873;DRZ011838;DRZ013223
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:109087445..109087463,-!p1@LEF1!2.40!250.42!LEF1;;chr5:133451294..133451310,+!p2@TCF7!2.38!238.65!TCF7;;chr3:63953435..63953499,+!p1@ATXN7!2.24!171.76!ATXN7;;chr3:71542615..71542644,-!p12@FOXP1!2.01!102.20!FOXP1;;chr7:50343634..50343717,+!p2@IKZF1!1.97!92.30!IKZF1;;chr3:71355163..71355209,-!p5@FOXP1!1.96!124.14!FOXP1;;chr5:133450365..133450444,+!p1@TCF7!1.91!348.07!TCF7;;chr6:91006518..91006570,-!p1@BACH2!1.85!156.51!BACH2;;chr4:109090075..109090095,-!p2@LEF1!1.81!64.21!LEF1;;chrY:21906594..21906622,-!p1@KDM5D!1.77!57.25!KDM5D;;chr2:192015701..192015743,-!p1@STAT4!1.73!71.97!STAT4;;chr5:133451347..133451358,+!p3@TCF7!1.73!52.44!TCF7;;chr3:18486354..18486377,-!p2@SATB1!1.71!62.07!SATB1;;chr2:231090433..231090469,+!p1@SP140!1.71!50.57!SP140;;chr6:91006575..91006602,-!p2@BACH2!1.69!69.83!BACH2;;chr2:192015750..192015793,-!p2@STAT4!1.68!62.60!STAT4;;chr19:16435625..16435682,+!p1@KLF2!1.66!1342.79!KLF2;;chr7:50344251..50344288,+!p3@IKZF1!1.65!43.88!IKZF1;;chr9:3525727..3525828,-!p2@RFX3!1.60!96.85!RFX3;;chr19:54058073..54058088,+!p1@ZNF331!1.60!38.79!ZNF331;;chrX:106960285..106960299,-!p1@TSC22D3!1.53!829.11!TSC22D3;;chr11:128392273..128392308,-!p2@ETS1!1.50!125.21!ETS1;;chr7:50343895..50343936,+!p5@IKZF1!1.50!30.50!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!1.49!80.80!ZNF101;;chr3:71542651..71542683,-!p22@FOXP1!1.48!29.43!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!1.47!99.53!RUNX1;;chr10:35484053..35484076,+!p1@CREM!1.45!66.35!CREM;;chr3:71542684..71542720,-!p18@FOXP1!1.45!27.29!FOXP1;;chr4:109089901..109089930,-!p3@LEF1!1.45!27.29!LEF1;;chr3:18480217..18480239,-!p3@SATB1!1.45!27.02!SATB1;;chr4:109089573..109089585,-!p8@LEF1!1.41!24.61!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.41!24.61!IKZF1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!24.35!ZNF331;;chr3:18487057..18487105,-!p4@SATB1!1.39!23.54!SATB1;;chr2:97202991..97203043,+!p3@ARID5A!1.39!23.28!ARID5A;;chr6:91006503..91006517,-!p3@BACH2!1.38!23.01!BACH2;;chr9:117150254..117150271,-!p1@AKNA!1.36!58.59!AKNA;;chr10:35416142..35416169,+!p3@CREM!1.36!56.99!CREM;;chr16:3313791..3313834,+!p2@ZNF263!1.35!46.55!ZNF263;;chr14:64970670..64970712,-!p3@ZBTB25!1.35!45.48!ZBTB25;;chr20:50159198..50159299,-!p1@NFATC2!1.35!31.03!NFATC2;;chr19:45971246..45971265,+!p1@FOSB!1.31!351.28!FOSB;;chr17:38497662..38497713,+!p4@RARA!1.29!21.67!RARA;;chr13:41593425..41593480,-!p1@ELF1!1.28!112.10!ELF1;;chr7:50348268..50348366,+!p4@IKZF1!1.28!18.19!IKZF1;;chr4:109086281..109086319,-!p9@LEF1!1.27!17.66!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!1.26!17.12!IKZF3;;chr4:38665769..38665801,+!p2@KLF3!1.25!149.29!KLF3;;chr3:71353892..71353928,-!p31@FOXP1!1.25!16.59!FOXP1;;chr2:100759037..100759058,-!p2@AFF3!1.24!16.32!AFF3;;chr14:99738138..99738163,-!p1@BCL11B!1.23!16.05!BCL11B;;chr9:20620829..20620848,-!p7@MLLT3!1.23!16.05!MLLT3;;chr8:123793988..123794016,+!p1@ZHX2!1.22!27.56!ZHX2;;chr19:12902289..12902307,+!p1@JUNB!1.21!3398.30!JUNB;;chr10:8096772..8096787,+!p2@GATA3!1.21!18.19!GATA3;;chr2:100759010..100759035,-!p1@AFF3!1.21!15.25!AFF3;;chr11:128392085..128392232,-!p1@ETS1!1.20!490.40!ETS1;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.20!82.40!ZNF10;;chr6:391743..391759,+!p1@IRF4!1.20!14.71!IRF4;;chr2:157189180..157189290,-!p1@NR4A2!1.19!74.91!NR4A2;;chrX:101186981..101187030,-!p1@ZMAT1!1.18!46.02!ZMAT1;;chr10:8096631..8096660,+!p1@GATA3!1.18!17.12!GATA3;;chr15:60884706..60884743,-!p1@RORA!1.17!71.17!RORA;;chr3:114819124..114819200,-!p3@ZBTB20!1.17!32.10!ZBTB20;;chr19:45972701..45972774,+!p2@FOSB!1.17!19.00!FOSB;;chr17:56565257..56565283,-!p2@HSF5!1.16!13.38!HSF5;;chr19:54041645..54041661,+!p5@ZNF331!1.15!13.11!ZNF331;;chr1:25256756..25256774,-!p1@RUNX3!1.13!23.54!RUNX3;;chr2:231090471..231090504,+!p2@SP140!1.13!12.57!SP140;;chr14:64971288..64971316,-!p2@ZBTB25!1.12!37.72!ZBTB25;;chr9:114287433..114287513,+!p1@ZNF483!1.12!31.84!ZNF483;;chr19:38085768..38085821,+!p1@ZNF540!1.12!18.19!ZNF540;;chr6:12009042..12009092,+!p6@HIVEP1!1.12!16.05!HIVEP1;;chr17:38020516..38020544,-!p5@IKZF3!1.12!12.31!IKZF3;;chr4:109089996..109090012,-!p5@LEF1!1.12!12.31!LEF1;;chr13:41240717..41240735,-!p2@FOXO1!1.11!80.53!FOXO1;;chr1:45805693..45805718,+!p3@TOE1!1.10!25.15!TOE1;;chr16:68119324..68119364,+!p1@NFATC3!1.09!50.30!NFATC3;;chr2:97202480..97202499,+!p1@ARID5A!1.08!111.83!ARID5A;;chr7:21467674..21467727,+!p1@SP4!1.07!42.54!SP4;;chr4:109090106..109090124,-!p10@LEF1!1.07!10.70!LEF1;;chr19:12444440..12444455,-!p1@ZNF563!1.06!18.19!ZNF563;;chr4:109088940..109089037,-!p4@LEF1!1.06!10.43!LEF1;;chr11:67007548..67007610,+!p3@KDM2A!1.05!76.52!KDM2A;;chr3:18466787..18466839,-!p1@SATB1!1.05!46.82!SATB1;;chr8:81397846..81397860,+!p3@ZBTB10!1.04!12.57!ZBTB10;;chr22:21771656..21771662,+!p1@HIC2!1.04!9.90!HIC2;;chr4:109090054..109090073,-!p7@LEF1!1.03!9.63!LEF1;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.63!NR3C2;;chr3:18480173..18480189,-!p6@SATB1!1.02!9.36!SATB1;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.56!FOXP1;;chr13:74708246..74708264,-!p8@KLF12!1.00!10.17!KLF12;;chr17:37934365.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%252c%2520donor2.CNhs13205.11795-124C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11795-124C4
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13205
+|library_id_phase_based=2:CNhs13205
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11795
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11795
 |name=CD4+CD25-CD45RA+ naive conventional T cells, donor2
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13205,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=1.2848
 |sample_age=23
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=FOX{D1,D2}:2.93005688477;PAX3,7:2.92016393468;CREB1:2.69351842472;CDX1,2,4:2.5232822633;BPTF:2.43220276335;RUNX1..3:2.31411520212;ELF1,2,4:2.23323208591;PDX1:2.20101749793;FOXO1,3,4:2.05190339211;RFX2..5_RFXANK_RFXAP:1.87451143445;ATF5_CREB3:1.72666350361;DMAP1_NCOR{1,2}_SMARC:1.7103464691;ETS1,2:1.6894328694;ZBTB16:1.62366683761;ATF4:1.52352719418;ELK1,4_GABP{A,B1}:1.51541619938;FOX{F1,F2,J1}:1.46469356749;PBX1:1.45694148141;TLX2:1.44240227443;FOXN1:1.43957077285;PAX6:1.40062401815;HMX1:1.36909432893;NKX6-1,2:1.31462835487;RFX1:1.28963932912;LEF1_TCF7_TCF7L1,2:1.22656809582;BREu{core}:1.18056985685;PAX4:1.17007577589;FOX{I1,J2}:1.16714691222;TGIF1:1.14928775643;IKZF2:1.12948426809;T:1.06578309993;RORA:1.03741659064;PITX1..3:1.02002067862;IRF1,2:0.979443796054;ATF2:0.963621359147;HIF1A:0.939590026384;SPI1:0.936491365493;FOXP1:0.889447091645;GATA6:0.877146613259;NKX2-1,4:0.832305829431;ZEB1:0.814529737442;SPIB:0.805751597996;AHR_ARNT_ARNT2:0.798921455358;PAX2:0.785117223317;STAT1,3:0.717060467434;SPZ1:0.669537226381;SOX2:0.668475057144;JUN:0.634286186835;YY1:0.633983482302;SOX5:0.61647100339;HBP1_HMGB_SSRP1_UBTF:0.584676449299;NFIX:0.495703043176;CUX2:0.40848820673;NRF1:0.393592801036;IRF7:0.360866364339;SNAI1..3:0.358910660914;ATF6:0.347018198135;STAT5{A,B}:0.320408720821;HOX{A6,A7,B6,B7}:0.214508931499;ALX1:0.19780755143;FOXQ1:0.172975387673;LMO2:0.162131019034;POU1F1:0.155291885316;NKX3-1:0.154924218639;CRX:0.128109406626;NANOG:0.119190437282;NKX2-2,8:0.105120280167;SREBF1,2:0.0751164301254;NFIL3:0.0208621517317;NANOG{mouse}:0.00481240226462;NR5A1,2:0.000332032836471;FOXA2:-0.0236776298714;NFKB1_REL_RELA:-0.0433275716769;TAL1_TCF{3,4,12}:-0.0439716642694;OCT4_SOX2{dimer}:-0.045912028422;MAFB:-0.060596543082;ZNF143:-0.0696951942102;FOXD3:-0.104203051777;POU2F1..3:-0.123459122797;VSX1,2:-0.15684378263;MYB:-0.160922216848;HOXA9_MEIS1:-0.192588775165;NFATC1..3:-0.195032406492;NFE2L1:-0.19688818225;AIRE:-0.211314945546;HES1:-0.223924231005;EVI1:-0.226454825494;RBPJ:-0.237210395583;EP300:-0.23743065682;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.247059463247;MYOD1:-0.247447960702;POU3F1..4:-0.252626685675;EGR1..3:-0.299980665796;NFY{A,B,C}:-0.326172835198;HNF1A:-0.331730742934;PRRX1,2:-0.35622285164;AR:-0.359785473946;TOPORS:-0.384760938598;E2F1..5:-0.390889144058;DBP:-0.44669932238;HNF4A_NR2F1,2:-0.479833861598;MYFfamily:-0.485758203194;ADNP_IRX_SIX_ZHX:-0.491980616639;HAND1,2:-0.520430492921;NHLH1,2:-0.523697300141;PAX5:-0.530073900283;TBX4,5:-0.564205988693;FOSL2:-0.592644923482;GLI1..3:-0.607548299632;SMAD1..7,9:-0.618758320788;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.620257951018;STAT2,4,6:-0.63293325455;MEF2{A,B,C,D}:-0.661411903768;HLF:-0.680080224187;RREB1:-0.692938421083;CEBPA,B_DDIT3:-0.701677073576;ARID5B:-0.70236307866;HMGA1,2:-0.70369721461;PAX8:-0.721357941495;GFI1:-0.733780292954;SOX{8,9,10}:-0.797173444169;GFI1B:-0.800943671578;SOX17:-0.802541979293;BACH2:-0.81128557543;FOS_FOS{B,L1}_JUN{B,D}:-0.817367971341;NR6A1:-0.823987291285;MZF1:-0.844335751778;MED-1{core}:-0.857996687427;ZFP161:-0.869932218219;PPARG:-0.944436204403;MYBL2:-0.961464472357;FOXP3:-0.975655553556;ALX4:-0.977587653042;GCM1,2:-0.986551566575;FOXM1:-0.989429009513;XBP1:-0.994936076933;MTE{core}:-1.00500041061;REST:-1.02587286585;ZNF148:-1.03044424942;NFE2:-1.04941565319;MTF1:-1.0512290803;ZNF238:-1.06087381708;bHLH_family:-1.07500398945;PRDM1:-1.09185974455;ZNF384:-1.10623822557;ZBTB6:-1.11991416357;LHX3,4:-1.15651090625;FOXL1:-1.19786963642;POU6F1:-1.19922844422;SRF:-1.24061226836;UFEwm:-1.24360673292;TP53:-1.25808846203;PATZ1:-1.28404147063;GATA4:-1.30107185301;EBF1:-1.32144269819;NKX2-3_NKX2-5:-1.34028846867;NR3C1:-1.3702676998;MAZ:-1.37040302205;RXRA_VDR{dimer}:-1.37921587081;ZNF423:-1.39949257197;HOX{A5,B5}:-1.41513014979;TEF:-1.43558693329;RXR{A,B,G}:-1.46423239446;NFE2L2:-1.4847002929;NKX3-2:-1.52342357414;TFAP4:-1.52700088051;POU5F1:-1.55639313108;GZF1:-1.55820297352;KLF4:-1.57539892594;GTF2I:-1.58431052319;GTF2A1,2:-1.59340640091;HIC1:-1.60517181087;ONECUT1,2:-1.60736489426;EN1,2:-1.62324825975;XCPE1{core}:-1.62435236951;CDC5L:-1.62831640872;HOX{A4,D4}:-1.64748392722;TLX1..3_NFIC{dimer}:-1.65510596907;TEAD1:-1.66585816441;SP1:-1.72047437232;TFCP2:-1.74062642933;NR1H4:-1.76521008971;TFDP1:-1.79681872617;TFAP2B:-1.80389402151;ESR1:-1.80920256331;ZIC1..3:-1.90275139874;TFAP2{A,C}:-1.94995601265;PAX1,9:-2.07298515544;ESRRA:-2.11534147052;TBP:-2.19430180858;HSF1,2:-2.38434276843;IKZF1:-2.7250353178
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11795-124C4;search_select_hide=table117:FF:11795-124C4
 }}

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FF:11795-124C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0