FF:11705-123B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00004926 | ||
|accession_numbers=CAGE;DRX008172;DRR009044;DRZ000469;DRZ001854 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013695 | ||
|accession_numbers=CAGE;DRX008172;DRR009044;DRZ000469;DRZ001854;DRZ011819;DRZ013204 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX012362;DRR013810;DRZ003011 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.70!501.54!IRF8;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!254.59!POU2AF1;;chr2:100759010..100759035,-!p1@AFF3!2.35!220.57!AFF3;;chrX:106960221..106960236,-!p3@TSC22D3!2.30!524.10!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.30!199.93!SPIB;;chr6:91006518..91006570,-!p1@BACH2!2.29!425.09!BACH2;;chrX:106960180..106960197,-!p2@TSC22D3!2.28!678.92!TSC22D3;;chr6:391743..391759,+!p1@IRF4!2.26!181.58!IRF4;;chrX:106960249..106960260,-!p5@TSC22D3!2.21!248.10!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!2.20!783.28!NR4A2;;chr2:100759037..100759058,-!p2@AFF3!2.10!125.39!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!2.08!119.65!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!2.05!163.23!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!2.03!106.27!IKZF3;;chr19:54058073..54058088,+!p1@ZNF331!2.02!103.21!ZNF331;;chr3:71355163..71355209,-!p5@FOXP1!1.97!125.39!FOXP1;;chr9:37034186..37034216,-!p2@PAX5!1.97!91.36!PAX5;;chr2:231090433..231090469,+!p1@SP140!1.95!89.07!SP140;;chr2:231090471..231090504,+!p2@SP140!1.88!74.54!SP140;;chr19:45971246..45971265,+!p1@FOSB!1.86!1250.80!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.85!134.56!NFKBID;;chr11:47400078..47400106,-!p1@SPI1!1.85!69.19!SPI1;;chr2:60780607..60780624,-!p2@BCL11A!1.81!186.55!BCL11A;;chr1:25256756..25256774,-!p1@RUNX3!1.79!111.62!RUNX3;;chr2:100758991..100759009,-!p3@AFF3!1.72!51.22!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.72!51.22!KDM5D;;chr14:75745523..75745537,+!p1@FOS!1.71!5689.75!FOS;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.46!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.70!49.31!ZBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.69!1218.69!TSC22D3;;chr9:102584262..102584276,+!p1@NR4A3!1.67!100.16!NR4A3;;chr2:157189617..157189667,-!p4@NR4A2!1.67!45.49!NR4A2;;chr19:54041645..54041661,+!p5@ZNF331!1.66!45.11!ZNF331;;chr5:158526756..158526797,-!p3@EBF1!1.66!44.73!EBF1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.20!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.40!NFATC2;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.05!BCL11A;;chr2:61108695..61108753,+!p1@REL!1.62!267.21!REL;;chr5:88178983..88179012,-!p1@MEF2C!1.60!285.18!MEF2C;;chr5:88120151..88120177,-!p6@MEF2C!1.59!37.85!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.58!1119.68!KLF2;;chr5:142782823..142782854,-!p3@NR3C1!1.58!52.75!NR3C1;;chr14:64971288..64971316,-!p2@ZBTB25!1.56!106.65!ZBTB25;;chr9:37034258..37034270,-!p3@PAX5!1.55!34.40!PAX5;;chr18:77155922..77155939,+!p1@NFATC1!1.52!84.86!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.43!ZHX2;;chr5:131826457..131826514,-!p1@IRF1!1.51!1155.99!IRF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.51!39.37!ZBTB10;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.73!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.50!43.58!ZNF860;;chr9:102584128..102584144,+!p3@NR4A3!1.49!56.19!NR4A3;;chr8:81397820..81397836,+!p2@ZBTB10!1.48!35.93!ZBTB10;;chr10:3827371..3827386,-!p2@KLF6!1.45!217.90!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.45!74.16!POU2F2;;chr4:103422499..103422632,+!p1@NFKB1!1.44!526.01!NFKB1;;chr9:3525727..3525828,-!p2@RFX3!1.44!65.75!RFX3;;chr3:71631151..71631194,-!p15@FOXP1!1.42!28.67!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.41!24.85!IKZF1;;chr14:35873947..35873965,-!p1@NFKBIA!1.40!1475.19!NFKBIA;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.37!CASZ1;;chr6:91006503..91006517,-!p3@BACH2!1.40!24.08!BACH2;;chr17:38497662..38497713,+!p4@RARA!1.39!27.14!RARA;;chr10:35484053..35484076,+!p1@CREM!1.38!56.58!CREM;;chr10:104155480..104155534,+!p2@NFKB2!1.37!141.82!NFKB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.37!26.38!ZBTB10;;chr9:37034469..37034474,-!p1@PAX5!1.36!22.17!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.36!22.17!PLEK;;chr13:41593425..41593480,-!p1@ELF1!1.35!132.27!ELF1;;chr9:102584159..102584174,+!p2@NR4A3!1.35!37.85!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.10!BCL11A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.32!24.08!ZFP36L1;;chr3:71409904..71409927,-!p46@FOXP1!1.32!19.88!FOXP1;;chr17:38020516..38020544,-!p5@IKZF3!1.32!19.88!IKZF3;;chr3:39195075..39195088,-!p1@CSRNP1!1.31!117.74!CSRNP1;;chr7:64126535..64126559,+!p2@ZNF107!1.31!41.29!ZNF107;;chr1:14075903..14075940,+!p1@PRDM2!1.30!390.30!PRDM2;;chr17:56565257..56565283,-!p2@HSF5!1.30!19.11!HSF5;;chr6:157098579..157098634,+!p4@ARID1B!1.29!40.90!ARID1B;;chr19:12902289..12902307,+!p1@JUNB!1.28!3958.06!JUNB;;chr6:44233252..44233296,-!p1@NFKBIE!1.27!171.26!NFKBIE;;chr9:102584241..102584261,+!p4@NR4A3!1.27!27.14!NR4A3;;chr19:58220517..58220583,-!p1@ZNF154!1.26!53.90!ZNF154;;chr2:61108808..61108821,+!p3@REL!1.26!21.41!REL;;chr14:75746722..75746777,+!p2@FOS!1.25!21.41!FOS;;chr3:18487057..18487105,-!p4@SATB1!1.25!16.82!SATB1;;chr8:86089531..86089544,+!p7@E2F5!1.25!16.82!E2F5;;chr2:208031542..208031595,-!p2@KLF7!1.24!112.77!KLF7;;chr10:104154246..104154347,+!p3@NFKB2!1.24!99.77!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.24!58.49!RARA;;chr18:52989031..52989079,-!p2@TCF4!1.24!38.23!TCF4;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.64!SATB1;;chr19:36204309..36204335,+!p1@ZBTB32!1.24!16.44!ZBTB32;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.44!EBF1;;chr2:97202480..97202499,+!p1@ARID5A!1.23!158.64!ARID5A;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.78!HHEX;;chr5:158526709..158526741,-!p7@EBF1!1.23!16.06!EBF1;;chr7:50348268..50348366,+!p4@IKZF1!1.23!16.06!IKZF1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1628.10!ZFP36L2;;chr3:71114066..71114114,-!p1@FOXP1!1.22!308.88!FOXP1;;chr19:45252008..45252024,+!p2@BCL3!1.22!50.84!BCL3;;chrX:101186981..101187030,-!p1@ZMAT1!1.22!50.84!ZMAT1;;chr12:72056800..72056834,+!p1@THAP2!1.22!21.03!THAP2;;chr3:5020939..5020952,+!p2@BHLHE40!1.21!47.78!BHLHE40;;chr19:12721790..12721810,+!p2@ZNF791!1.21!41.29!ZNF791;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.79!ZBTB16;;chr1:59249707..59249727,-!p1@JUN!1.20!610.87!JUN;;chr6:144385698..144385742,-!p2@PLAGL1!1.20!17.97!PLAGL1;;chr2:60778035..60778060,-!p4@BCL11A!1.20!17.58!BCL11A;;chr19:18392422..18392440,-!p1@JUND!1.19!1978.65!JUND;;chr5:133450365..133450444,+!p1@TCF7!1.19!64.99!TCF7;;chr3:71179699..71179744,-!p2@FOXP1!1.18!105.13!FOXP1;;chr15:50647274..50647336,-!p1@GABPB1!1.18!97.86!GABPB1;;chr19:13213662..13213686,-!p1@LYL1!1.18!20.64!LYL1;;chr19:45972701..45972774,+!p2@FOSB!1.18!19.11!FOSB;;chr9:102584278..102584285,+!p5@NR4A3!1.18!14.14!NR4A3;;chr9:117160738..117160782,-!p2@AKNA!1.17!56.19!AKNA;;chr2:192015701..192015743,-!p1@STAT4!1.17!18.73!STAT4;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.76!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.17!13.76!AFF3;;chr8:123794038..123794056,+!p5@ZHX2!1.17!13.76!ZHX2;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.78!RUNX1;;chr9:37034147..37034157,-!p7@PAX5!1.16!13.38!PAX5;;chr12:52445218..52445237,+!p1@NR4A1!1.15!164.00!NR4A1;;chr11:67007548..67007610,+!p3@KDM2A!1.15!97.86!KDM2A;;chr13:41240717..41240735,-!p2@FOXO1!1.15!87.92!FOXO1;;chr7:21467674..21467727,+!p1@SP4!1.15!51.61!SP4;;chr7:104654690..104654704,+!p2@MLL5!1.15!25.99!MLL5;;chr7:64126503..64126528,+!p1@ZNF107!1.14!90.98!ZNF107;;chr8:81398444..81398472,+!p1@ZBTB10!1.14!51.22!ZBTB10;;chr14:35872453..35872485,-!p2@NFKBIA!1.14!31.73!NFKBIA;;chr9:117150254..117150271,-!p1@AKNA!1.13!34.40!AKNA;;chr19:12075844..12075880,+!p3@ZNF763!1.13!21.41!ZNF763;;chr7:104654718..104654741,+!p3@MLL5!1.13!18.35!MLL5;;chr19:54041603..54041615,+!p10@ZNF331!1.13!12.62!ZNF331;;chr10:104154415..104154434,+!p5@NFKB2!1.13!12.62!NFKB2;;chr1:45805693..45805718,+!p3@TOE1!1.12!26.38!TOE1;;chr8:102218439..102218455,-!p3@ZNF706!1.12!12.23!ZNF706;;chrY:21906761..21906810,-!p2@KDM5D!1.12!12.23!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.11!159.41!ZEB2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.11!66.52!ZNF10;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.70!MBNL3;;chr21:30671189..30671207,+!p4@BACH1!1.11!41.67!BACH1;;chr1:27023752..27023799,+!p4@ARID1A!1.11!15.67!ARID1A;;chr19:54041574..54041589,+!p6@ZNF331!1.11!11.85!ZNF331;;chr2:61108650..61108687,+!p2@REL!1.10!57.34!REL;;chr6:43337124..43337144,-!p4@ZNF318!1.10!16.44!ZNF318;;chr9:37027156..37027193,-!p4@PAX5!1.10!11.47!PAX5;;chr13:41593392..41593403,-!p7@ELF1!1.10!11.47!ELF1;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.29!EBF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.09!24.08!ZC3H4;;chr8:123793959..123793977,+!p4@ZHX2!1.09!22.17!ZHX2;;chr10:3827389..3827408,-!p1@KLF6!1.08!844.44!KLF6;;chr7:64838786..64838809,+!p2@ZNF92!1.08!63.46!ZNF92;;chr17:37934204..37934241,-!p3@IKZF3!1.08!11.09!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.07!129.97!FLI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.07!66.52!CSRNP1;;chr1:91487836..91487854,-!p3@ZNF644!1.07!24.85!ZNF644;;chr18:53254566..53254567,-!p8@TCF4!1.07!17.97!TCF4;;chr17:38020607..38020621,-!p9@IKZF3!1.07!10.70!IKZF3;;chr1:14057463..14057496,+!p4@PRDM2!1.07!10.70!PRDM2;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.70!POU2F1;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr2:157186630..157186686,-!p6@NR4A2!1.07!10.70!NR4A2;;chr2:60780730..60780742,-!p5@BCL11A!1.07!10.70!BCL11A;;chr3:71631217..71631234,-!p33@FOXP1!1.07!10.70!FOXP1;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.43!PHTF2;;chr19:45504688..45504782,+!p1@RELB!1.06!64.22!RELB;;chr1:59249688..59249703,-!p3@JUN!1.06!63.46!JUN;;chr3:101546827..101546847,+!p2@NFKBIZ!1.06!14.91!NFKBIZ;;chr19:45579725..45579743,-!p1@ZNF296!1.05!46.64!ZNF296;;chr6:12008986..12009016,+!p3@HIVEP1!1.05!32.49!HIVEP1;;chr9:110252074..110252079,-!p3@KLF4!1.05!17.20!KLF4;;chr7:128577972..128578047,+!p1@IRF5!1.05!16.44!IRF5;;chr10:3819310..3819325,-!p5@KLF6!1.05!13.76!KLF6;;chr6:12009042..12009092,+!p6@HIVEP1!1.05!13.38!HIVEP1;;chr17:38020481..38020506,-!p7@IKZF3!1.05!10.32!IKZF3;;chr12:108154762..108154776,-!p4@PRDM4!1.05!10.32!PRDM4;;chr2:157189567..157189580,-!p19@NR4A2!1.05!10.32!NR4A2;;chr10:3827417..3827428,-!p3@KLF6!1.04!87.16!KLF6;;chr1:14026671..14026705,+!p2@PRDM2!1.04!61.93!PRDM2;;chr3:23986824..23986848,+!p2@NR1D2!1.04!56.19!NR1D2;;chr7:21467642..21467671,+!p2@SP4!1.04!22.94!SP4;;chr1:156470515..156470542,-!p2@MEF2D!1.03!51.61!MEF2D;;chr2:208394817..208394834,+!p3@CREB1!1.03!39.76!CREB1;;chr3:710077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| |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.70!501.54!IRF8;;chr11:111249993..111250006,-!p1@POU2AF1!2.41!254.59!POU2AF1;;chr2:100759010..100759035,-!p1@AFF3!2.35!220.57!AFF3;;chrX:106960221..106960236,-!p3@TSC22D3!2.30!524.10!TSC22D3;;chr19:50922187..50922204,+!p1@SPIB!2.30!199.93!SPIB;;chr6:91006518..91006570,-!p1@BACH2!2.29!425.09!BACH2;;chrX:106960180..106960197,-!p2@TSC22D3!2.28!678.92!TSC22D3;;chr6:391743..391759,+!p1@IRF4!2.26!181.58!IRF4;;chrX:106960249..106960260,-!p5@TSC22D3!2.21!248.10!TSC22D3;;chr2:157189180..157189290,-!p1@NR4A2!2.20!783.28!NR4A2;;chr2:100759037..100759058,-!p2@AFF3!2.10!125.39!AFF3;;chr19:54041669..54041697,+!p2@ZNF331!2.08!119.65!ZNF331;;chr6:91006575..91006602,-!p2@BACH2!2.05!163.23!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!2.03!106.27!IKZF3;;chr19:54058073..54058088,+!p1@ZNF331!2.02!103.21!ZNF331;;chr3:71355163..71355209,-!p5@FOXP1!1.97!125.39!FOXP1;;chr9:37034186..37034216,-!p2@PAX5!1.97!91.36!PAX5;;chr2:231090433..231090469,+!p1@SP140!1.95!89.07!SP140;;chr2:231090471..231090504,+!p2@SP140!1.88!74.54!SP140;;chr19:45971246..45971265,+!p1@FOSB!1.86!1250.80!FOSB;;chr19:36391434..36391450,-!p1@NFKBID!1.85!134.56!NFKBID;;chr11:47400078..47400106,-!p1@SPI1!1.85!69.19!SPI1;;chr2:60780607..60780624,-!p2@BCL11A!1.81!186.55!BCL11A;;chr1:25256756..25256774,-!p1@RUNX3!1.79!111.62!RUNX3;;chr2:100758991..100759009,-!p3@AFF3!1.72!51.22!AFF3;;chrY:21906594..21906622,-!p1@KDM5D!1.72!51.22!KDM5D;;chr14:75745523..75745537,+!p1@FOS!1.71!5689.75!FOS;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.46!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.70!49.31!ZBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.69!1218.69!TSC22D3;;chr9:102584262..102584276,+!p1@NR4A3!1.67!100.16!NR4A3;;chr2:157189617..157189667,-!p4@NR4A2!1.67!45.49!NR4A2;;chr19:54041645..54041661,+!p5@ZNF331!1.66!45.11!ZNF331;;chr5:158526756..158526797,-!p3@EBF1!1.66!44.73!EBF1;;chr7:50344289..50344323,+!p1@IKZF1!1.65!43.20!IKZF1;;chr20:50159198..50159299,-!p1@NFATC2!1.63!60.40!NFATC2;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.05!BCL11A;;chr2:61108695..61108753,+!p1@REL!1.62!267.21!REL;;chr5:88178983..88179012,-!p1@MEF2C!1.60!285.18!MEF2C;;chr5:88120151..88120177,-!p6@MEF2C!1.59!37.85!MEF2C;;chr19:16435625..16435682,+!p1@KLF2!1.58!1119.68!KLF2;;chr5:142782823..142782854,-!p3@NR3C1!1.58!52.75!NR3C1;;chr14:64971288..64971316,-!p2@ZBTB25!1.56!106.65!ZBTB25;;chr9:37034258..37034270,-!p3@PAX5!1.55!34.40!PAX5;;chr18:77155922..77155939,+!p1@NFATC1!1.52!84.86!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.52!55.43!ZHX2;;chr5:131826457..131826514,-!p1@IRF1!1.51!1155.99!IRF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.51!39.37!ZBTB10;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.73!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.50!43.58!ZNF860;;chr9:102584128..102584144,+!p3@NR4A3!1.49!56.19!NR4A3;;chr8:81397820..81397836,+!p2@ZBTB10!1.48!35.93!ZBTB10;;chr10:3827371..3827386,-!p2@KLF6!1.45!217.90!KLF6;;chr19:42636586..42636607,-!p1@POU2F2!1.45!74.16!POU2F2;;chr4:103422499..103422632,+!p1@NFKB1!1.44!526.01!NFKB1;;chr9:3525727..3525828,-!p2@RFX3!1.44!65.75!RFX3;;chr3:71631151..71631194,-!p15@FOXP1!1.42!28.67!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.41!24.85!IKZF1;;chr14:35873947..35873965,-!p1@NFKBIA!1.40!1475.19!NFKBIA;;chr1:10754477..10754517,-!p1@CASZ1!1.40!39.37!CASZ1;;chr6:91006503..91006517,-!p3@BACH2!1.40!24.08!BACH2;;chr17:38497662..38497713,+!p4@RARA!1.39!27.14!RARA;;chr10:35484053..35484076,+!p1@CREM!1.38!56.58!CREM;;chr10:104155480..104155534,+!p2@NFKB2!1.37!141.82!NFKB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.37!26.38!ZBTB10;;chr9:37034469..37034474,-!p1@PAX5!1.36!22.17!PAX5;;chr2:68592406..68592424,+!p1@PLEK!1.36!22.17!PLEK;;chr13:41593425..41593480,-!p1@ELF1!1.35!132.27!ELF1;;chr9:102584159..102584174,+!p2@NR4A3!1.35!37.85!NR4A3;;chr2:60780753..60780800,-!p1@BCL11A!1.33!97.10!BCL11A;;chr14:69262947..69262986,-!p3@ZFP36L1!1.32!24.08!ZFP36L1;;chr3:71409904..71409927,-!p46@FOXP1!1.32!19.88!FOXP1;;chr17:38020516..38020544,-!p5@IKZF3!1.32!19.88!IKZF3;;chr3:39195075..39195088,-!p1@CSRNP1!1.31!117.74!CSRNP1;;chr7:64126535..64126559,+!p2@ZNF107!1.31!41.29!ZNF107;;chr1:14075903..14075940,+!p1@PRDM2!1.30!390.30!PRDM2;;chr17:56565257..56565283,-!p2@HSF5!1.30!19.11!HSF5;;chr6:157098579..157098634,+!p4@ARID1B!1.29!40.90!ARID1B;;chr19:12902289..12902307,+!p1@JUNB!1.28!3958.06!JUNB;;chr6:44233252..44233296,-!p1@NFKBIE!1.27!171.26!NFKBIE;;chr9:102584241..102584261,+!p4@NR4A3!1.27!27.14!NR4A3;;chr19:58220517..58220583,-!p1@ZNF154!1.26!53.90!ZNF154;;chr2:61108808..61108821,+!p3@REL!1.26!21.41!REL;;chr14:75746722..75746777,+!p2@FOS!1.25!21.41!FOS;;chr3:18487057..18487105,-!p4@SATB1!1.25!16.82!SATB1;;chr8:86089531..86089544,+!p7@E2F5!1.25!16.82!E2F5;;chr2:208031542..208031595,-!p2@KLF7!1.24!112.77!KLF7;;chr10:104154246..104154347,+!p3@NFKB2!1.24!99.77!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.24!58.49!RARA;;chr18:52989031..52989079,-!p2@TCF4!1.24!38.23!TCF4;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.64!SATB1;;chr19:36204309..36204335,+!p1@ZBTB32!1.24!16.44!ZBTB32;;chr5:158526693..158526706,-!p8@EBF1!1.24!16.44!EBF1;;chr2:97202480..97202499,+!p1@ARID5A!1.23!158.64!ARID5A;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.78!HHEX;;chr5:158526709..158526741,-!p7@EBF1!1.23!16.06!EBF1;;chr7:50348268..50348366,+!p4@IKZF1!1.23!16.06!IKZF1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1628.10!ZFP36L2;;chr3:71114066..71114114,-!p1@FOXP1!1.22!308.88!FOXP1;;chr19:45252008..45252024,+!p2@BCL3!1.22!50.84!BCL3;;chrX:101186981..101187030,-!p1@ZMAT1!1.22!50.84!ZMAT1;;chr12:72056800..72056834,+!p1@THAP2!1.22!21.03!THAP2;;chr3:5020939..5020952,+!p2@BHLHE40!1.21!47.78!BHLHE40;;chr19:12721790..12721810,+!p2@ZNF791!1.21!41.29!ZNF791;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.79!ZBTB16;;chr1:59249707..59249727,-!p1@JUN!1.20!610.87!JUN;;chr6:144385698..144385742,-!p2@PLAGL1!1.20!17.97!PLAGL1;;chr2:60778035..60778060,-!p4@BCL11A!1.20!17.58!BCL11A;;chr19:18392422..18392440,-!p1@JUND!1.19!1978.65!JUND;;chr5:133450365..133450444,+!p1@TCF7!1.19!64.99!TCF7;;chr3:71179699..71179744,-!p2@FOXP1!1.18!105.13!FOXP1;;chr15:50647274..50647336,-!p1@GABPB1!1.18!97.86!GABPB1;;chr19:13213662..13213686,-!p1@LYL1!1.18!20.64!LYL1;;chr19:45972701..45972774,+!p2@FOSB!1.18!19.11!FOSB;;chr9:102584278..102584285,+!p5@NR4A3!1.18!14.14!NR4A3;;chr9:117160738..117160782,-!p2@AKNA!1.17!56.19!AKNA;;chr2:192015701..192015743,-!p1@STAT4!1.17!18.73!STAT4;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.76!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.17!13.76!AFF3;;chr8:123794038..123794056,+!p5@ZHX2!1.17!13.76!ZHX2;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.78!RUNX1;;chr9:37034147..37034157,-!p7@PAX5!1.16!13.38!PAX5;;chr12:52445218..52445237,+!p1@NR4A1!1.15!164.00!NR4A1;;chr11:67007548..67007610,+!p3@KDM2A!1.15!97.86!KDM2A;;chr13:41240717..41240735,-!p2@FOXO1!1.15!87.92!FOXO1;;chr7:21467674..21467727,+!p1@SP4!1.15!51.61!SP4;;chr7:104654690..104654704,+!p2@MLL5!1.15!25.99!MLL5;;chr7:64126503..64126528,+!p1@ZNF107!1.14!90.98!ZNF107;;chr8:81398444..81398472,+!p1@ZBTB10!1.14!51.22!ZBTB10;;chr14:35872453..35872485,-!p2@NFKBIA!1.14!31.73!NFKBIA;;chr9:117150254..117150271,-!p1@AKNA!1.13!34.40!AKNA;;chr19:12075844..12075880,+!p3@ZNF763!1.13!21.41!ZNF763;;chr7:104654718..104654741,+!p3@MLL5!1.13!18.35!MLL5;;chr19:54041603..54041615,+!p10@ZNF331!1.13!12.62!ZNF331;;chr10:104154415..104154434,+!p5@NFKB2!1.13!12.62!NFKB2;;chr1:45805693..45805718,+!p3@TOE1!1.12!26.38!TOE1;;chr8:102218439..102218455,-!p3@ZNF706!1.12!12.23!ZNF706;;chrY:21906761..21906810,-!p2@KDM5D!1.12!12.23!KDM5D;;chr2:145277640..145277771,-!p1@ZEB2!1.11!159.41!ZEB2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.11!66.52!ZNF10;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.70!MBNL3;;chr21:30671189..30671207,+!p4@BACH1!1.11!41.67!BACH1;;chr1:27023752..27023799,+!p4@ARID1A!1.11!15.67!ARID1A;;chr19:54041574..54041589,+!p6@ZNF331!1.11!11.85!ZNF331;;chr2:61108650..61108687,+!p2@REL!1.10!57.34!REL;;chr6:43337124..43337144,-!p4@ZNF318!1.10!16.44!ZNF318;;chr9:37027156..37027193,-!p4@PAX5!1.10!11.47!PAX5;;chr13:41593392..41593403,-!p7@ELF1!1.10!11.47!ELF1;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.29!EBF1;;chr19:47616992..47617011,-!p4@ZC3H4!1.09!24.08!ZC3H4;;chr8:123793959..123793977,+!p4@ZHX2!1.09!22.17!ZHX2;;chr10:3827389..3827408,-!p1@KLF6!1.08!844.44!KLF6;;chr7:64838786..64838809,+!p2@ZNF92!1.08!63.46!ZNF92;;chr17:37934204..37934241,-!p3@IKZF3!1.08!11.09!IKZF3;;chr11:128563948..128564003,+!p1@FLI1!1.07!129.97!FLI1;;chr3:39195037..39195069,-!p2@CSRNP1!1.07!66.52!CSRNP1;;chr1:91487836..91487854,-!p3@ZNF644!1.07!24.85!ZNF644;;chr18:53254566..53254567,-!p8@TCF4!1.07!17.97!TCF4;;chr17:38020607..38020621,-!p9@IKZF3!1.07!10.70!IKZF3;;chr1:14057463..14057496,+!p4@PRDM2!1.07!10.70!PRDM2;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.70!POU2F1;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr2:157186630..157186686,-!p6@NR4A2!1.07!10.70!NR4A2;;chr2:60780730..60780742,-!p5@BCL11A!1.07!10.70!BCL11A;;chr3:71631217..71631234,-!p33@FOXP1!1.07!10.70!FOXP1;;chr7:77428066..77428132,+!p2@PHTF2!1.06!68.43!PHTF2;;chr19:45504688..45504782,+!p1@RELB!1.06!64.22!RELB;;chr1:59249688..59249703,-!p3@JUN!1.06!63.46!JUN;;chr3:101546827..101546847,+!p2@NFKBIZ!1.06!14.91!NFKBIZ;;chr19:45579725..45579743,-!p1@ZNF296!1.05!46.64!ZNF296;;chr6:12008986..12009016,+!p3@HIVEP1!1.05!32.49!HIVEP1;;chr9:110252074..110252079,-!p3@KLF4!1.05!17.20!KLF4;;chr7:128577972..128578047,+!p1@IRF5!1.05!16.44!IRF5;;chr10:3819310..3819325,-!p5@KLF6!1.05!13.76!KLF6;;chr6:12009042..12009092,+!p6@HIVEP1!1.05!13.38!HIVEP1;;chr17:38020481..38020506,-!p7@IKZF3!1.05!10.32!IKZF3;;chr12:108154762..108154776,-!p4@PRDM4!1.05!10.32!PRDM4;;chr2:157189567..157189580,-!p19@NR4A2!1.05!10.32!NR4A2;;chr10:3827417..3827428,-!p3@KLF6!1.04!87.16!KLF6;;chr1:14026671..14026705,+!p2@PRDM2!1.04!61.93!PRDM2;;chr3:23986824..23986848,+!p2@NR1D2!1.04!56.19!NR1D2;;chr7:21467642..21467671,+!p2@SP4!1.04!22.94!SP4;;chr1:156470515..156470542,-!p2@MEF2D!1.03!51.61!MEF2D;;chr2:208394817..208394834,+!p3@CREB1!1.03!39.76!CREB1;;chr3:710077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OPORS!0.43!3.06!TOPORS;;chr12:133563026..133563037,+!p3@ZNF26!0.43!2.29!ZNF26;;chr2:61108689..61108694,+!p6@REL!0.43!2.29!REL;;chr4:81104865..81104886,+!p6@PRDM8!0.43!1.91!PRDM8;;chrX:118739835..118739862,-!p1@NKRF!0.43!1.91!NKRF;;chr15:31619119..31619131,+!p14@KLF13!0.43!1.91!KLF13;;chr18:32924372..32924430,-!p1@ZNF24!0.42!72.63!ZNF24;;chr3:126194707..126194798,-!p1@ZXDC!0.42!38.99!ZXDC;;chr1:151431909..151431987,-!p1@POGZ!0.42!27.91!POGZ;;chr19:52598958..52599026,-!p1@ZNF841!0.42!22.17!ZNF841;;chr4:140098339..140098392,-!p1@ELF2!0.42!19.11!ELF2;;chr19:57901208..57901280,+!p1@ZNF548!0.42!18.35!ZNF548;;chr3:40518599..40518664,+!p1@ZNF619!0.42!13.38!ZNF619;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.42!11.09!ZNF551;;chr17:2304365..2304388,-!p2@MNT!0.42!10.70!MNT;;chr19:58238958..58239000,-!p1@ZNF671!0.42!9.17!ZNF671;;chr3:107241882..107241904,+!p2@BBX!0.42!5.35!BBX;;chr12:133613937..133613994,+!p2@ZNF84!0.42!4.97!ZNF84;;chr6:12012249..12012266,+!p5@HIVEP1!0.42!3.44!HIVEP1;;chr20:42143136..42143161,+!p3@L3MBTL1!0.42!3.06!L3MBTL;;chr1:67390715..67390733,+!p7@MIER1!0.42!2.29!MIER1;;chr16:29817199..29817222,+!p17@MAZ!0.42!2.29!MAZ;;chr8:60031809..60031835,-!p4@TOX!0.42!2.29!TOX;;chr1:155829208..155829230,-!p3@GON4L!0.42!1.91!GON4L;;chr14:103058948..103059005,+!p1@RCOR1!0.41!63.08!RCOR1;;chr12:50478977..50479040,+!p1@SMARCD1!0.41!51.22!SMARCD1;;chr19:23578226..23578285,-!p1@ZNF91!0.41!38.61!ZNF91;;chr3:129158768..129158819,-!p1@MBD4!0.41!35.55!MBD4;;chr8:146126799..146126865,-!p1@COMMD5,p1@ZNF250!0.41!21.41!ZNF250;;chr12:53773944..53773993,+!p1@SP1!0.41!19.11!SP1;;chr19:53141584..53141625,-!p2@ZNF83!0.41!17.97!ZNF83;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.41!17.58!ZNF564;;chr19:58400372..58400411,-!p1@ZNF814!0.41!11.47!ZNF814;;chr9:37465399..37465454,-!p1@ZBTB5!0.41!9.56!ZBTB5;;chr8:128750654..128750793,+!p3@MYC!0.41!8.79!MYC;;chr8:123794102..123794160,+!p3@ZHX2!0.41!5.73!ZHX2;;chr3:150126101..150126118,+!p6@TSC22D2!0.41!3.06!TSC22D2;;chr19:54024251..54024305,+!p4@ZNF331!0.41!3.06!ZNF331;;chr1:8483849..8483868,-!p14@RERE!0.41!3.06!RERE;;chr1:78149157..78149168,-!p4@ZZZ3!0.41!1.91!ZZZ3;;chr19:12551849..12551868,-!p4@ZNF443!0.41!1.91!ZNF443;;chr19:20748557..20748568,-!p2@ZNF737!0.41!1.91!ZNF737;;chr12:54785054..54785072,-!p4@ZNF385A!0.41!1.91!ZNF385A;;chr3:14989138..14989151,+!p6@NR2C2!0.41!1.91!NR2C2;;chrX:107019163..107019179,-!p7@TSC22D3!0.41!1.91!TSC22D3;;chr3:14989076..14989113,+!p1@NR2C2!0.40!47.40!NR2C2;;chr5:132299290..132299310,-!p2@AFF4!0.40!44.34!AFF4;;chr9:129567282..129567353,+!p1@ZBTB43!0.40!29.44!ZBTB43;;chr1:161015706..161015747,-!p1@USF1!0.40!26.76!USF1;;chr4:124374..124410,+!p2@ZNF718!0.40!22.94!ZNF718;;chr6:35310312..35310359,+!p1@PPARD!0.40!20.26!PPARD;;chr2:113033164..113033219,+!p1@ZC3H6!0.40!18.73!ZC3H6;;chr1:155532531..155532605,-!p1@ASH1L!0.40!14.91!ASH1L;;chr4:492909..492968,-!p2@ZNF721!0.40!9.56!ZNF721;;chr13:74708504..74708549,-!p1@KLF12!0.40!9.56!KLF12;;chr8:28748099..28748141,+!p2@HMBOX1!0.40!6.50!HMBOX1;;chr3:187463220..187463232,-!p3@BCL6!0.40!6.12!BCL6;;chr19:19729477..19729542,-!p1@PBX4!0.40!4.21!PBX4;;chr14:64970361..64970389,-!p4@ZBTB25!0.40!3.82!ZBTB25;;chr1:205592857..205592880,-!p6@ELK4!0.40!3.06!ELK4;;chr4:331619..331630,+!p2@ZNF141!0.40!2.68!ZNF141;;chr18:77867177..77867197,+!p3@ADNP2!0.40!2.68!ADNP2;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.40!2.29!ZNF700;;chr2:208031943..208031978,-!p5@KLF7!0.40!2.29!KLF7;;chr5:88179518..88179569,-!p5@MEF2C!0.40!2.29!MEF2C;;chr6:157099387..157099403,+!p8@ARID1B!0.40!2.29!ARID1B;;chr9:110250697..110250738,-!p2@KLF4!0.40!1.91!KLF4;;chr11:10876220..10876224,-!p3@ZBED5!0.40!1.91!ZBED5;;chr14:89878472..89878496,-!p7@FOXN3!0.40!1.91!FOXN3;;chr14:75746705..75746720,+!p8@FOS!0.40!1.53!FOS;;chr17:36871943..36871947,+!p8@MLLT6!0.40!1.53!MLLT6;;chr17:37934280..37934299,-!p6@IKZF3!0.40!1.53!IKZF3;;chr19:12734557..12734565,+!p4@ZNF791!0.40!1.53!ZNF791;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |ffid_belonging_in_development=CL:0000134,CL:0000051 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
| Line 40: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11705-123B4 | |id=FF:11705-123B4 | ||
|is_a=EFO:0002091;;FF:0000025;;FF:0000210 | |is_a=EFO:0002091;;FF:0000025;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12354!SRhi10066.CTTGTA | |library_id=CNhs12354!SRhi10066.CTTGTA | ||
| | |library_id_phase_based=2:CNhs12354 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11705 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.CTTGTA.11705 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11705 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.CTTGTA.11705 | |||
|name=CD19+ B Cells, donor3 | |name=CD19+ B Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 50: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12354,LSID913,release011,COMPLETED | |profile_hcage=CNhs12354,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
| Line 66: | Line 82: | ||
|rna_tube_id=123B4 | |rna_tube_id=123B4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10066.CTTGTA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |sample_category=primary cells | ||
| Line 89: | Line 106: | ||
|top_motifs=ATF4:3.20228720448;POU2F1..3:3.03939578548;CREB1:2.73650975189;FOX{D1,D2}:2.62068526254;ATF5_CREB3:2.57955215972;NFKB1_REL_RELA:2.57722775596;PAX3,7:2.48970003099;FOX{I1,J2}:2.43574464265;RFX2..5_RFXANK_RFXAP:2.38824670112;POU5F1:2.33302012119;DMAP1_NCOR{1,2}_SMARC:2.28361258129;BPTF:2.18215094749;FOXN1:2.17326766157;AIRE:2.09015888853;HMX1:2.06671235407;FOX{F1,F2,J1}:1.97010124613;FOXP1:1.8584990661;HIF1A:1.84715026317;FOXO1,3,4:1.79955227147;PAX2:1.7473542374;ZBTB16:1.74011824833;SPI1:1.64149260451;ELF1,2,4:1.45532702444;RUNX1..3:1.45423902742;FOXA2:1.38277074676;TLX2:1.30766057081;IRF1,2:1.27460591306;PITX1..3:1.26237991766;JUN:1.25599501622;NKX6-1,2:1.25388585533;BREu{core}:1.25383829568;SPIB:1.22916109631;ETS1,2:1.15255590824;TOPORS:1.13202360553;RFX1:1.12272148301;PAX6:1.11732828508;CRX:1.04280427274;MAFB:0.911382932365;SREBF1,2:0.869027150943;ATF2:0.861687454633;CDX1,2,4:0.819980698401;RXRA_VDR{dimer}:0.638079334474;EGR1..3:0.631462766838;LMO2:0.613477668742;HBP1_HMGB_SSRP1_UBTF:0.60233007327;ATF6:0.597918717107;ZEB1:0.573584722783;FOXL1:0.573248384944;NKX2-1,4:0.570852685104;TGIF1:0.533116475202;IKZF2:0.530920966935;PBX1:0.509161634216;MYB:0.383823198984;FOXP3:0.348301312036;AHR_ARNT_ARNT2:0.347195115243;NFIL3:0.307705737677;LEF1_TCF7_TCF7L1,2:0.307672000623;SMAD1..7,9:0.274828217665;SNAI1..3:0.256994513401;STAT5{A,B}:0.255151229923;MEF2{A,B,C,D}:0.235913336579;bHLH_family:0.235451083692;NANOG{mouse}:0.186835317069;OCT4_SOX2{dimer}:0.160674255023;SOX5:0.156605973641;HOXA9_MEIS1:0.149041834933;IRF7:0.119611132654;HMGA1,2:0.0142256213815;ZFP161:0.00828784774665;RXR{A,B,G}:-0.0230665190119;ALX4:-0.0352916004687;NHLH1,2:-0.0497204858176;NANOG:-0.0588181051736;FOXQ1:-0.0642647156696;MYOD1:-0.0786447900519;CUX2:-0.103202133645;FOSL2:-0.128644890184;HES1:-0.136082866874;VSX1,2:-0.136501264763;TBX4,5:-0.136535489719;ELK1,4_GABP{A,B1}:-0.14242696035;FOS_FOS{B,L1}_JUN{B,D}:-0.158118212204;ZNF384:-0.159641563068;NKX3-1:-0.165308843219;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.168683880789;T:-0.173605333064;GATA6:-0.189729122174;PAX4:-0.194586792072;E2F1..5:-0.197526118748;MED-1{core}:-0.202048851437;POU1F1:-0.204991164424;NFATC1..3:-0.205437000932;NKX2-2,8:-0.209776837755;POU6F1:-0.228173562154;PDX1:-0.237222735322;MYFfamily:-0.241927743125;GLI1..3:-0.269000417258;EP300:-0.297443968872;CEBPA,B_DDIT3:-0.298524404018;SOX{8,9,10}:-0.300986198451;BACH2:-0.303909869222;RORA:-0.314425856579;NR5A1,2:-0.32032218559;HNF4A_NR2F1,2:-0.32919092898;DBP:-0.378562709952;RREB1:-0.39904113488;TEF:-0.42816818237;SOX2:-0.435553611832;MTE{core}:-0.474204557682;CDC5L:-0.479525829316;TAL1_TCF{3,4,12}:-0.494100036941;ESR1:-0.497257857059;PATZ1:-0.516642306837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558053250014;NFY{A,B,C}:-0.574010833808;NR6A1:-0.586590496931;EVI1:-0.587948915976;PPARG:-0.617999160421;EBF1:-0.630659223346;NRF1:-0.63603386618;HOX{A5,B5}:-0.645210181685;SRF:-0.653418419299;TFDP1:-0.663989805241;FOXD3:-0.683409817105;HNF1A:-0.706530567955;NFIX:-0.715121889594;ALX1:-0.732075916468;PRRX1,2:-0.737234548479;HOX{A6,A7,B6,B7}:-0.737900053173;HLF:-0.765941203886;GATA4:-0.768265250648;NFE2:-0.779521725547;YY1:-0.78475073771;TFCP2:-0.798303076957;TFAP4:-0.818548520212;TFAP2{A,C}:-0.825879469039;TFAP2B:-0.827077795206;HAND1,2:-0.859886270999;AR:-0.860980999664;REST:-0.861795374099;ONECUT1,2:-0.861802839388;MZF1:-0.886451399099;STAT1,3:-0.916696271322;HSF1,2:-0.920068151681;ZNF143:-0.920167472152;MTF1:-0.954617307161;PRDM1:-0.982646788014;SOX17:-0.990688557205;XBP1:-0.996341286272;UFEwm:-1.03132261256;SP1:-1.03524771521;MAZ:-1.05839044329;NFE2L1:-1.0959037406;ZNF423:-1.09681324168;XCPE1{core}:-1.10470826067;HIC1:-1.10614932971;TBP:-1.11285219731;ZNF148:-1.13191865324;LHX3,4:-1.16832553553;SPZ1:-1.18229846389;STAT2,4,6:-1.18992313123;EN1,2:-1.20066852368;POU3F1..4:-1.20733721358;NFE2L2:-1.29918178861;ZNF238:-1.30175670135;PAX5:-1.31920344236;ADNP_IRX_SIX_ZHX:-1.33215033138;GFI1B:-1.36317238962;ZIC1..3:-1.37485116665;GFI1:-1.39089321772;TP53:-1.44288988661;NKX3-2:-1.44808260057;NKX2-3_NKX2-5:-1.47920002916;HOX{A4,D4}:-1.49269717795;PAX8:-1.50130737151;RBPJ:-1.55111796418;ESRRA:-1.56629136231;GCM1,2:-1.57906210193;GZF1:-1.6073276255;MYBL2:-1.7172362977;GTF2A1,2:-1.72587892511;ARID5B:-1.76672619072;TEAD1:-1.78458457702;GTF2I:-1.92762655897;ZBTB6:-1.9499363608;FOXM1:-2.0717180083;IKZF1:-2.1702840783;KLF4:-2.1842415219;TLX1..3_NFIC{dimer}:-2.18470935514;NR1H4:-2.24338952862;NR3C1:-2.72478329103;PAX1,9:-2.98726944969 | |top_motifs=ATF4:3.20228720448;POU2F1..3:3.03939578548;CREB1:2.73650975189;FOX{D1,D2}:2.62068526254;ATF5_CREB3:2.57955215972;NFKB1_REL_RELA:2.57722775596;PAX3,7:2.48970003099;FOX{I1,J2}:2.43574464265;RFX2..5_RFXANK_RFXAP:2.38824670112;POU5F1:2.33302012119;DMAP1_NCOR{1,2}_SMARC:2.28361258129;BPTF:2.18215094749;FOXN1:2.17326766157;AIRE:2.09015888853;HMX1:2.06671235407;FOX{F1,F2,J1}:1.97010124613;FOXP1:1.8584990661;HIF1A:1.84715026317;FOXO1,3,4:1.79955227147;PAX2:1.7473542374;ZBTB16:1.74011824833;SPI1:1.64149260451;ELF1,2,4:1.45532702444;RUNX1..3:1.45423902742;FOXA2:1.38277074676;TLX2:1.30766057081;IRF1,2:1.27460591306;PITX1..3:1.26237991766;JUN:1.25599501622;NKX6-1,2:1.25388585533;BREu{core}:1.25383829568;SPIB:1.22916109631;ETS1,2:1.15255590824;TOPORS:1.13202360553;RFX1:1.12272148301;PAX6:1.11732828508;CRX:1.04280427274;MAFB:0.911382932365;SREBF1,2:0.869027150943;ATF2:0.861687454633;CDX1,2,4:0.819980698401;RXRA_VDR{dimer}:0.638079334474;EGR1..3:0.631462766838;LMO2:0.613477668742;HBP1_HMGB_SSRP1_UBTF:0.60233007327;ATF6:0.597918717107;ZEB1:0.573584722783;FOXL1:0.573248384944;NKX2-1,4:0.570852685104;TGIF1:0.533116475202;IKZF2:0.530920966935;PBX1:0.509161634216;MYB:0.383823198984;FOXP3:0.348301312036;AHR_ARNT_ARNT2:0.347195115243;NFIL3:0.307705737677;LEF1_TCF7_TCF7L1,2:0.307672000623;SMAD1..7,9:0.274828217665;SNAI1..3:0.256994513401;STAT5{A,B}:0.255151229923;MEF2{A,B,C,D}:0.235913336579;bHLH_family:0.235451083692;NANOG{mouse}:0.186835317069;OCT4_SOX2{dimer}:0.160674255023;SOX5:0.156605973641;HOXA9_MEIS1:0.149041834933;IRF7:0.119611132654;HMGA1,2:0.0142256213815;ZFP161:0.00828784774665;RXR{A,B,G}:-0.0230665190119;ALX4:-0.0352916004687;NHLH1,2:-0.0497204858176;NANOG:-0.0588181051736;FOXQ1:-0.0642647156696;MYOD1:-0.0786447900519;CUX2:-0.103202133645;FOSL2:-0.128644890184;HES1:-0.136082866874;VSX1,2:-0.136501264763;TBX4,5:-0.136535489719;ELK1,4_GABP{A,B1}:-0.14242696035;FOS_FOS{B,L1}_JUN{B,D}:-0.158118212204;ZNF384:-0.159641563068;NKX3-1:-0.165308843219;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.168683880789;T:-0.173605333064;GATA6:-0.189729122174;PAX4:-0.194586792072;E2F1..5:-0.197526118748;MED-1{core}:-0.202048851437;POU1F1:-0.204991164424;NFATC1..3:-0.205437000932;NKX2-2,8:-0.209776837755;POU6F1:-0.228173562154;PDX1:-0.237222735322;MYFfamily:-0.241927743125;GLI1..3:-0.269000417258;EP300:-0.297443968872;CEBPA,B_DDIT3:-0.298524404018;SOX{8,9,10}:-0.300986198451;BACH2:-0.303909869222;RORA:-0.314425856579;NR5A1,2:-0.32032218559;HNF4A_NR2F1,2:-0.32919092898;DBP:-0.378562709952;RREB1:-0.39904113488;TEF:-0.42816818237;SOX2:-0.435553611832;MTE{core}:-0.474204557682;CDC5L:-0.479525829316;TAL1_TCF{3,4,12}:-0.494100036941;ESR1:-0.497257857059;PATZ1:-0.516642306837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558053250014;NFY{A,B,C}:-0.574010833808;NR6A1:-0.586590496931;EVI1:-0.587948915976;PPARG:-0.617999160421;EBF1:-0.630659223346;NRF1:-0.63603386618;HOX{A5,B5}:-0.645210181685;SRF:-0.653418419299;TFDP1:-0.663989805241;FOXD3:-0.683409817105;HNF1A:-0.706530567955;NFIX:-0.715121889594;ALX1:-0.732075916468;PRRX1,2:-0.737234548479;HOX{A6,A7,B6,B7}:-0.737900053173;HLF:-0.765941203886;GATA4:-0.768265250648;NFE2:-0.779521725547;YY1:-0.78475073771;TFCP2:-0.798303076957;TFAP4:-0.818548520212;TFAP2{A,C}:-0.825879469039;TFAP2B:-0.827077795206;HAND1,2:-0.859886270999;AR:-0.860980999664;REST:-0.861795374099;ONECUT1,2:-0.861802839388;MZF1:-0.886451399099;STAT1,3:-0.916696271322;HSF1,2:-0.920068151681;ZNF143:-0.920167472152;MTF1:-0.954617307161;PRDM1:-0.982646788014;SOX17:-0.990688557205;XBP1:-0.996341286272;UFEwm:-1.03132261256;SP1:-1.03524771521;MAZ:-1.05839044329;NFE2L1:-1.0959037406;ZNF423:-1.09681324168;XCPE1{core}:-1.10470826067;HIC1:-1.10614932971;TBP:-1.11285219731;ZNF148:-1.13191865324;LHX3,4:-1.16832553553;SPZ1:-1.18229846389;STAT2,4,6:-1.18992313123;EN1,2:-1.20066852368;POU3F1..4:-1.20733721358;NFE2L2:-1.29918178861;ZNF238:-1.30175670135;PAX5:-1.31920344236;ADNP_IRX_SIX_ZHX:-1.33215033138;GFI1B:-1.36317238962;ZIC1..3:-1.37485116665;GFI1:-1.39089321772;TP53:-1.44288988661;NKX3-2:-1.44808260057;NKX2-3_NKX2-5:-1.47920002916;HOX{A4,D4}:-1.49269717795;PAX8:-1.50130737151;RBPJ:-1.55111796418;ESRRA:-1.56629136231;GCM1,2:-1.57906210193;GZF1:-1.6073276255;MYBL2:-1.7172362977;GTF2A1,2:-1.72587892511;ARID5B:-1.76672619072;TEAD1:-1.78458457702;GTF2I:-1.92762655897;ZBTB6:-1.9499363608;FOXM1:-2.0717180083;IKZF1:-2.1702840783;KLF4:-2.1842415219;TLX1..3_NFIC{dimer}:-2.18470935514;NR1H4:-2.24338952862;NR3C1:-2.72478329103;PAX1,9:-2.98726944969 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11705-123B4;search_select_hide=table117:FF:11705-123B4 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | CD19+ B Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12354,SRhi10066.CTTGTA |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12354
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12354
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.647 |
| 10 | 10 | 0.00683 |
| 100 | 100 | 0.73 |
| 101 | 101 | 0.451 |
| 102 | 102 | 0.891 |
| 103 | 103 | 0.549 |
| 104 | 104 | 0.741 |
| 105 | 105 | 0.819 |
| 106 | 106 | 0.0721 |
| 107 | 107 | 0.189 |
| 108 | 108 | 0.384 |
| 109 | 109 | 0.982 |
| 11 | 11 | 0.517 |
| 110 | 110 | 0.99 |
| 111 | 111 | 0.163 |
| 112 | 112 | 0.854 |
| 113 | 113 | 0.0348 |
| 114 | 114 | 0.673 |
| 115 | 115 | 0.967 |
| 116 | 116 | 0.14 |
| 117 | 117 | 8.98836e-4 |
| 118 | 118 | 0.291 |
| 119 | 119 | 0.561 |
| 12 | 12 | 0.565 |
| 120 | 120 | 0.364 |
| 121 | 121 | 0.243 |
| 122 | 122 | 0.752 |
| 123 | 123 | 2.71168e-4 |
| 124 | 124 | 0.819 |
| 125 | 125 | 0.376 |
| 126 | 126 | 0.335 |
| 127 | 127 | 0.724 |
| 128 | 128 | 0.783 |
| 129 | 129 | 0.216 |
| 13 | 13 | 0.459 |
| 130 | 130 | 0.074 |
| 131 | 131 | 0.249 |
| 132 | 132 | 0.106 |
| 133 | 133 | 0.0698 |
| 134 | 134 | 0.679 |
| 135 | 135 | 0.0495 |
| 136 | 136 | 0.372 |
| 137 | 137 | 0.00729 |
| 138 | 138 | 0.604 |
| 139 | 139 | 0.371 |
| 14 | 14 | 0.523 |
| 140 | 140 | 0.117 |
| 141 | 141 | 0.256 |
| 142 | 142 | 0.62 |
| 143 | 143 | 0.612 |
| 144 | 144 | 0.749 |
| 145 | 145 | 0.927 |
| 146 | 146 | 0.502 |
| 147 | 147 | 0.153 |
| 148 | 148 | 0.204 |
| 149 | 149 | 0.875 |
| 15 | 15 | 0.496 |
| 150 | 150 | 0.804 |
| 151 | 151 | 0.85 |
| 152 | 152 | 0.993 |
| 153 | 153 | 0.358 |
| 154 | 154 | 0.245 |
| 155 | 155 | 0.0161 |
| 156 | 156 | 0.69 |
| 157 | 157 | 0.517 |
| 158 | 158 | 0.0035 |
| 159 | 159 | 0.566 |
| 16 | 16 | 0.202 |
| 160 | 160 | 0.34 |
| 161 | 161 | 0.978 |
| 162 | 162 | 0.302 |
| 163 | 163 | 0.37 |
| 164 | 164 | 0.0374 |
| 165 | 165 | 0.759 |
| 166 | 166 | 0.318 |
| 167 | 167 | 0.13 |
| 168 | 168 | 0.778 |
| 169 | 169 | 0.33 |
| 17 | 17 | 0.786 |
| 18 | 18 | 0.92 |
| 19 | 19 | 0.0731 |
| 2 | 2 | 0.205 |
| 20 | 20 | 0.112 |
| 21 | 21 | 0.784 |
| 22 | 22 | 0.31 |
| 23 | 23 | 0.869 |
| 24 | 24 | 0.349 |
| 25 | 25 | 0.114 |
| 26 | 26 | 0.552 |
| 27 | 27 | 0.494 |
| 28 | 28 | 0.481 |
| 29 | 29 | 0.0515 |
| 3 | 3 | 0.499 |
| 30 | 30 | 0.0758 |
| 31 | 31 | 0.695 |
| 32 | 32 | 0.0141 |
| 33 | 33 | 0.527 |
| 34 | 34 | 0.401 |
| 35 | 35 | 0.202 |
| 36 | 36 | 0.0771 |
| 37 | 37 | 0.255 |
| 38 | 38 | 0.968 |
| 39 | 39 | 0.4 |
| 4 | 4 | 0.868 |
| 40 | 40 | 0.585 |
| 41 | 41 | 0.089 |
| 42 | 42 | 0.501 |
| 43 | 43 | 0.393 |
| 44 | 44 | 0.846 |
| 45 | 45 | 0.2 |
| 46 | 46 | 0.745 |
| 47 | 47 | 0.613 |
| 48 | 48 | 0.838 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.875 |
| 50 | 50 | 0.76 |
| 51 | 51 | 0.868 |
| 52 | 52 | 0.909 |
| 53 | 53 | 0.422 |
| 54 | 54 | 0.884 |
| 55 | 55 | 0.639 |
| 56 | 56 | 0.753 |
| 57 | 57 | 0.795 |
| 58 | 58 | 0.104 |
| 59 | 59 | 0.569 |
| 6 | 6 | 0.807 |
| 60 | 60 | 0.461 |
| 61 | 61 | 0.139 |
| 62 | 62 | 0.183 |
| 63 | 63 | 0.887 |
| 64 | 64 | 0.987 |
| 65 | 65 | 0.671 |
| 66 | 66 | 0.289 |
| 67 | 67 | 0.635 |
| 68 | 68 | 0.827 |
| 69 | 69 | 0.413 |
| 7 | 7 | 0.532 |
| 70 | 70 | 0.275 |
| 71 | 71 | 0.123 |
| 72 | 72 | 0.417 |
| 73 | 73 | 0.557 |
| 74 | 74 | 0.596 |
| 75 | 75 | 0.00952 |
| 76 | 76 | 0.0149 |
| 77 | 77 | 0.0101 |
| 78 | 78 | 0.71 |
| 79 | 79 | 0.534 |
| 8 | 8 | 0.527 |
| 80 | 80 | 0.279 |
| 81 | 81 | 0.41 |
| 82 | 82 | 0.295 |
| 83 | 83 | 0.535 |
| 84 | 84 | 0.0812 |
| 85 | 85 | 0.471 |
| 86 | 86 | 0.033 |
| 87 | 87 | 0.57 |
| 88 | 88 | 0.71 |
| 89 | 89 | 0.00188 |
| 9 | 9 | 0.703 |
| 90 | 90 | 0.308 |
| 91 | 91 | 0.17 |
| 92 | 92 | 0.971 |
| 93 | 93 | 0.555 |
| 94 | 94 | 0.251 |
| 95 | 95 | 0.103 |
| 96 | 96 | 0.549 |
| 97 | 97 | 0.523 |
| 98 | 98 | 0.262 |
| 99 | 99 | 1.25909e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12354
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
