FF:11693-123A1: Difference between revisions

Latest revision as of 18:15, 4 June 2020

Name:	Trabecular Meshwork Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12124
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	NA
sex	NA
age	NA
cell type	trabecular meshwork cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC6595
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004707

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12124		CAGE		DRX008521		DRR009393

Accession ID Hg19

Library id		BAM		CTSS
CNhs12124		DRZ000818		DRZ002203

Accession ID Hg38

Library id		BAM		CTSS
CNhs12124		DRZ012168		DRZ013553

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0578
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0901
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.13
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.13
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0565
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.311
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.13
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.491
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.299
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.3
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.13
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.077
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.52
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.13
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.13
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.13
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.13
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.312
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.23
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12124

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.288
MA0003.1	MA0003.1	0.276
MA0004.1	MA0004.1	0.709
MA0006.1	MA0006.1	0.302
MA0007.1	MA0007.1	0.0912
MA0009.1	MA0009.1	0.167
MA0014.1	MA0014.1	0.937
MA0017.1	MA0017.1	0.854
MA0018.2	MA0018.2	0.51
MA0019.1	MA0019.1	0.902
MA0024.1	MA0024.1	0.0357
MA0025.1	MA0025.1	0.559
MA0027.1	MA0027.1	0.26
MA0028.1	MA0028.1	0.619
MA0029.1	MA0029.1	0.593
MA0030.1	MA0030.1	0.739
MA0031.1	MA0031.1	0.107
MA0035.2	MA0035.2	0.686
MA0038.1	MA0038.1	6.37419e-4
MA0039.2	MA0039.2	0.144
MA0040.1	MA0040.1	0.444
MA0041.1	MA0041.1	0.232
MA0042.1	MA0042.1	0.477
MA0043.1	MA0043.1	0.636
MA0046.1	MA0046.1	0.0242
MA0047.2	MA0047.2	0.62
MA0048.1	MA0048.1	0.0959
MA0050.1	MA0050.1	1.20175e-4
MA0051.1	MA0051.1	0.00457
MA0052.1	MA0052.1	0.395
MA0055.1	MA0055.1	0.00151
MA0057.1	MA0057.1	0.691
MA0058.1	MA0058.1	0.996
MA0059.1	MA0059.1	0.621
MA0060.1	MA0060.1	5.15064e-8
MA0061.1	MA0061.1	0.144
MA0062.2	MA0062.2	0.294
MA0065.2	MA0065.2	0.891
MA0066.1	MA0066.1	0.432
MA0067.1	MA0067.1	0.0619
MA0068.1	MA0068.1	0.293
MA0069.1	MA0069.1	0.76
MA0070.1	MA0070.1	0.00299
MA0071.1	MA0071.1	0.505
MA0072.1	MA0072.1	0.978
MA0073.1	MA0073.1	0.824
MA0074.1	MA0074.1	0.464
MA0076.1	MA0076.1	0.998
MA0077.1	MA0077.1	0.201
MA0078.1	MA0078.1	0.973
MA0079.2	MA0079.2	0.282
MA0080.2	MA0080.2	3.37535e-6
MA0081.1	MA0081.1	0.185
MA0083.1	MA0083.1	0.0466
MA0084.1	MA0084.1	0.115
MA0087.1	MA0087.1	0.494
MA0088.1	MA0088.1	0.609
MA0090.1	MA0090.1	0.265
MA0091.1	MA0091.1	0.254
MA0092.1	MA0092.1	0.756
MA0093.1	MA0093.1	0.786
MA0099.2	MA0099.2	0.74
MA0100.1	MA0100.1	0.556
MA0101.1	MA0101.1	0.346
MA0102.2	MA0102.2	0.16
MA0103.1	MA0103.1	0.263
MA0104.2	MA0104.2	0.284
MA0105.1	MA0105.1	0.154
MA0106.1	MA0106.1	0.642
MA0107.1	MA0107.1	0.258
MA0108.2	MA0108.2	2.90343e-6
MA0111.1	MA0111.1	0.0644
MA0112.2	MA0112.2	0.744
MA0113.1	MA0113.1	0.126
MA0114.1	MA0114.1	0.792
MA0115.1	MA0115.1	0.541
MA0116.1	MA0116.1	0.435
MA0117.1	MA0117.1	0.117
MA0119.1	MA0119.1	0.888
MA0122.1	MA0122.1	0.349
MA0124.1	MA0124.1	0.932
MA0125.1	MA0125.1	0.794
MA0131.1	MA0131.1	0.708
MA0135.1	MA0135.1	0.014
MA0136.1	MA0136.1	4.16934e-5
MA0137.2	MA0137.2	0.251
MA0138.2	MA0138.2	0.525
MA0139.1	MA0139.1	0.691
MA0140.1	MA0140.1	0.917
MA0141.1	MA0141.1	0.5
MA0142.1	MA0142.1	0.547
MA0143.1	MA0143.1	0.0942
MA0144.1	MA0144.1	0.342
MA0145.1	MA0145.1	0.589
MA0146.1	MA0146.1	0.00792
MA0147.1	MA0147.1	0.297
MA0148.1	MA0148.1	0.363
MA0149.1	MA0149.1	0.176
MA0150.1	MA0150.1	0.0294
MA0152.1	MA0152.1	0.885
MA0153.1	MA0153.1	0.134
MA0154.1	MA0154.1	0.711
MA0155.1	MA0155.1	0.133
MA0156.1	MA0156.1	0.0133
MA0157.1	MA0157.1	0.0786
MA0159.1	MA0159.1	0.0685
MA0160.1	MA0160.1	0.889
MA0162.1	MA0162.1	0.253
MA0163.1	MA0163.1	0.947
MA0164.1	MA0164.1	0.821
MA0258.1	MA0258.1	0.944
MA0259.1	MA0259.1	0.508

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12124

Novel motif	Logo	P-value
1	1	0.0889
10	10	0.0416
100	100	0.436
101	101	0.0895
102	102	0.895
103	103	0.103
104	104	0.201
105	105	0.243
106	106	0.881
107	107	0.257
108	108	0.372
109	109	0.579
11	11	0.74
110	110	0.397
111	111	0.026
112	112	0.393
113	113	0.214
114	114	0.0393
115	115	0.294
116	116	0.526
117	117	0.976
118	118	0.639
119	119	0.224
12	12	0.775
120	120	0.354
121	121	0.806
122	122	0.589
123	123	2.97115e-4
124	124	0.148
125	125	0.178
126	126	0.872
127	127	0.405
128	128	0.668
129	129	0.549
13	13	0.591
130	130	0.00993
131	131	0.75
132	132	0.228
133	133	0.142
134	134	0.832
135	135	0.145
136	136	0.203
137	137	0.00981
138	138	0.0974
139	139	0.0126
14	14	0.623
140	140	0.294
141	141	0.272
142	142	0.193
143	143	0.466
144	144	0.939
145	145	0.929
146	146	0.283
147	147	0.997
148	148	0.0544
149	149	0.965
15	15	0.0925
150	150	0.275
151	151	0.95
152	152	0.0693
153	153	0.315
154	154	0.0772
155	155	0.298
156	156	0.845
157	157	0.617
158	158	0.0329
159	159	0.988
16	16	0.999
160	160	0.332
161	161	0.764
162	162	0.0933
163	163	0.696
164	164	0.708
165	165	0.0158
166	166	0.815
167	167	0.0391
168	168	0.756
169	169	0.295
17	17	0.99
18	18	0.862
19	19	0.361
2	2	0.462
20	20	0.994
21	21	0.679
22	22	0.216
23	23	0.388
24	24	0.746
25	25	0.0643
26	26	0.427
27	27	0.917
28	28	0.106
29	29	0.602
3	3	0.346
30	30	0.163
31	31	0.627
32	32	0.0034
33	33	0.654
34	34	0.324
35	35	0.268
36	36	0.197
37	37	0.932
38	38	0.744
39	39	0.916
4	4	0.969
40	40	0.287
41	41	0.146
42	42	0.263
43	43	0.48
44	44	0.425
45	45	0.238
46	46	0.673
47	47	0.803
48	48	0.641
49	49	0.223
5	5	0.095
50	50	0.366
51	51	0.989
52	52	0.629
53	53	0.221
54	54	0.865
55	55	0.449
56	56	0.788
57	57	0.262
58	58	0.0254
59	59	0.147
6	6	0.519
60	60	0.396
61	61	0.895
62	62	0.021
63	63	0.999
64	64	0.665
65	65	0.567
66	66	0.275
67	67	0.353
68	68	0.0124
69	69	0.316
7	7	0.172
70	70	0.563
71	71	0.0948
72	72	0.364
73	73	0.0151
74	74	0.385
75	75	0.768
76	76	0.318
77	77	0.534
78	78	0.35
79	79	0.782
8	8	0.982
80	80	0.589
81	81	0.375
82	82	0.209
83	83	0.44
84	84	0.866
85	85	0.599
86	86	0.823
87	87	0.0919
88	88	0.361
89	89	0.927
9	9	0.379
90	90	0.00369
91	91	0.368
92	92	0.203
93	93	0.275
94	94	0.251
95	95	0.196
96	96	0.337
97	97	0.963
98	98	0.67
99	99	0.00332

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12124

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000188 human trabecular meshwork cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002367 (trabecular meshwork cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0002203 (vasculature of eye)
0001768 (uvea)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005969 (reticulum trabeculare)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
0003956 (aqueous drainage system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000188 (human trabecular meshwork cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004707
-|accession_numbers=CAGE;DRX008521;DRR009393;DRZ000818;DRZ002203
+|accession_numbers=CAGE;DRX008521;DRR009393;DRZ000818;DRZ002203;DRZ012168;DRZ013553
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.04!107.78!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.94!228.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.91!79.79!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.87!89.23!FOXF1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.34!POU3F3;;chr9:132427972..132428056,+!p1@PRRX2!1.70!64.04!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.69!149.42!TWIST2;;chr9:129376233..129376251,+!p2@LMX1B!1.68!47.24!LMX1B;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.64!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.63!41.29!TFAP2B;;chr4:111544219..111544240,-!p1@PITX2!1.62!40.24!PITX2;;chr6:34204921..34204939,+!p3@HMGA1!1.57!1027.41!HMGA1;;chr9:129376201..129376225,+!p1@LMX1B!1.57!36.04!LMX1B;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.69!HIF3A;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.09!TWIST2;;chr20:42543441..42543497,+!p1@TOX2!1.47!123.18!TOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.12!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.99!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.58!NR2F1;;chr17:41622765..41622821,-!p2@ETV4!1.31!29.74!ETV4;;chr5:3595977..3595999,+!p1@IRX1!1.31!19.25!IRX1;;chr20:42543506..42543549,+!p2@TOX2!1.30!45.14!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.29!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.29!19.95!GLIS1;;chr17:41623009..41623053,-!p4@ETV4!1.28!28.69!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.27!43.04!FOXC2;;chr19:45260775..45260838,+!p5@BCL3!1.25!21.70!BCL3;;chr11:63684602..63684664,-!p1@RCOR2!1.23!31.14!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!1.21!64.04!ETV4;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.85!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.20!14.70!SOX11;;chr4:111558135..111558198,-!p2@PITX2!1.19!14.35!PITX2;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.15!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.18!15.40!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!1.17!13.65!IRX1;;chr5:3595961..3595975,+!p3@IRX1!1.17!13.65!IRX1;;chr16:54320101..54320125,-!p4@IRX3!1.16!19.25!IRX3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.20!PRRX1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.16!13.30!POU3F3;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.05!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.15!14.70!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.12!30.44!TWIST1;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.40!TBX2;;chr17:41622834..41622883,-!p6@ETV4!1.10!14.00!ETV4;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.30!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.70!AEBP1;;chr8:60031682..60031710,-!p2@TOX!1.08!17.85!TOX;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.30!NR2F1;;chr5:2751785..2751808,-!p2@IRX2!1.07!10.85!IRX2;;chr12:2986206..2986258,-!p2@FOXM1!1.06!63.34!FOXM1;;chr14:74256787..74256858,-!p6@C14orf43!1.05!10.15!C14orf43;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.35!ZBTB16;;chr8:60031809..60031835,-!p4@TOX!1.04!12.60!TOX;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.54!NR2F1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.35!TOX;;chr15:67418119..67418162,+!p5@SMAD3!1.03!10.85!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!1.03!9.80!ETV4;;chr6:41701581..41701613,-!p2@TFEB!1.03!9.80!TFEB;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1219.87!CEBPD;;chr6:1389789..1389821,+!p1@FOXF2!1.01!12.95!FOXF2;;chr9:77112244..77112262,+!p1@RORB!1.00!10.15!RORB;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.10!NFE2L1;;chr17:17726907..17726958,-!p2@SREBF1!0.99!54.94!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.15!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.15!PBX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.99!8.75!TFAP2B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.99!8.75!RUNX1T1;;chr19:49865646..49865718,-!p1@TEAD2!0.97!74.19!TEAD2;;chr6:41701557..41701578,-!p3@TFEB!0.97!8.40!TFEB;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.90!IRX3;;chr5:92919068..92919082,+!p5@NR2F1!0.96!9.80!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.96!8.05!HIF3A;;chr16:54964899..54964914,+!p2@IRX5!0.94!7.70!IRX5;;chr4:111544254..111544270,-!p3@PITX2!0.94!7.70!PITX2;;chr6:50789717..50789729,+!p4@TFAP2B!0.94!7.70!TFAP2B;;chr5:176738887..176738934,-!p1@MXD3!0.92!50.39!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.92!32.89!PCBP3;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.44!MYBL2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.60!HIC1;;chr17:41623667..41623682,-!p8@ETV4!0.91!7.70!ETV4;;chr6:41703296..41703367,-!p1@TFEB!0.90!37.09!TFEB;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.90!7.00!RUNX1T1;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.75!NR1H3;;chr17:41623259..41623278,-!p7@ETV4!0.89!8.05!ETV4;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.04!GATA2;;chr20:50721803..50721857,-!p2@ZFP64!0.88!10.50!ZFP64;;chr17:41622982..41623001,-!p11@ETV4!0.88!6.65!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.87!9.45!TOX;;chr1:8483878..8483907,-!p4@RERE!0.86!25.55!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.86!17.50!GLI3;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.30!TCF4;;chr11:44331576..44331650,-!p1@ALX4!0.86!6.30!ALX4;;chr16:54964740..54964789,+!p1@IRX5!0.85!9.10!IRX5;;chr16:73093174..73093209,-!p3@ZFHX3!0.85!8.40!ZFHX3;;chr5:92919375..92919438,+!p6@NR2F1!0.85!6.65!NR2F1;;chr14:75894714..75894733,+!p1@JDP2!0.84!179.52!JDP2;;chr3:185826855..185826911,-!p1@ETV5!0.84!172.87!ETV5;;chr3:52001448..52001478,-!p2@PCBP4!0.84!87.13!PCBP4;;chr5:321810..321877,+!p1@AHRR!0.84!19.95!AHRR;;chr3:12329358..12329393,+!p3@PPARG!0.84!15.40!PPARG;;chr19:49864746..49864780,-!p2@TEAD2!0.84!8.40!TEAD2;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.84!5.95!POU3F3;;chr6:50786547..50786564,+!p3@TFAP2B!0.84!5.95!TFAP2B;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.95!CREB3L1;;chr12:2986275..2986363,-!p1@FOXM1!0.83!61.94!FOXM1;;chr16:54320675..54320715,-!p1@IRX3!0.82!12.60!IRX3;;chr6:85474299..85474324,-!p1@TBX18!0.82!10.50!TBX18;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.45!FOXQ1;;chr5:92920456..92920488,+!p9@NR2F1!0.82!6.65!NR2F1;;chr17:41623075..41623101,-!p9@ETV4!0.82!6.65!ETV4;;chr5:92918860..92918871,+!p10@NR2F1!0.82!6.30!NR2F1;;chr8:60031934..60031986,-!p6@TOX!0.82!5.60!TOX;;chr15:67418177..67418204,+!p9@SMAD3!0.82!5.60!SMAD3;;chr18:52969844..52969895,-!p27@TCF4!0.82!5.60!TCF4;;chr19:45251943..45252006,+!p1@BCL3!0.81!156.77!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.81!27.29!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!0.81!22.40!SIX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.75!PITX1;;chr9:130954041..130954121,-!p2@CIZ1!0.80!24.85!CIZ1;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.25!EMX2;;chr6:34204973..34204990,+!p4@HMGA1!0.79!75.59!HMGA1;;chr1:8763440..8763460,-!p2@RERE!0.79!27.99!RERE;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.35!FOSL1;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.70!HMGA2;;chr16:54320646..54320672,-!p2@IRX3!0.77!7.70!IRX3;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.90!ZBTB16;;chr8:60031840..60031869,-!p5@TOX!0.77!4.90!TOX;;chr4:299227..299272,-!p1@ZNF732!0.77!4.90!ZNF732;;chr8:48650697..48650708,-!p2@CEBPD!0.76!39.54!CEBPD;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.35!PCBP4;;chr16:54320617..54320643,-!p3@IRX3!0.76!6.30!IRX3;;chr17:17740287..17740307,-!p1@SREBF1!0.75!135.07!SREBF1;;chr1:164528445..164528459,+!p2@PBX1!0.75!15.75!PBX1;;chr6:34204672..34204692,+!p1@HMGA1!0.74!569.69!HMGA1;;chr2:19558373..19558392,-!p1@OSR1!0.74!13.30!OSR1;;chr5:76383133..76383186,-!p2@ZBED3!0.74!9.80!ZBED3;;chr12:66218183..66218209,+!p4@HMGA2!0.74!9.10!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.55!PRRX1;;chr3:128212033..128212051,-!p1@GATA2!0.74!4.55!GATA2;;chr15:67391010..67391046,+!p13@SMAD3!0.74!4.55!SMAD3;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.83!MYBL2;;chr1:164528410..164528428,+!p1@PBX1!0.72!36.04!PBX1;;chr1:164528911..164528940,+!p7@PBX1!0.72!6.65!PBX1;;chr15:67418047..67418093,+!p4@SMAD3!0.72!5.60!SMAD3;;chr16:54319010..54319041,-!p8@IRX3!0.72!4.20!IRX3;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.72!4.20!MEF2B;;chr6:41562324..41562340,+!p16@FOXP4!0.72!4.20!FOXP4;;chr6:50786631..50786635,+!p11@TFAP2B!0.72!4.20!TFAP2B;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.20!EMX2;;chr3:71179699..71179744,-!p2@FOXP1!0.71!34.64!FOXP1;;chr14:21994337..21994442,-!p1@SALL2!0.71!12.60!SALL2;;chrX:106960285..106960299,-!p1@TSC22D3!0.70!123.88!TSC22D3;;chr19:1592714..1592762,-!p1@MBD3!0.70!34.29!MBD3;;chr1:8483821..8483845,-!p11@RERE!0.70!8.75!RERE;;chr1:149858461..149858479,+!p1@BOLA1!0.69!1738.83!BOLA1;;chr19:3366570..3366619,+!p1@NFIC!0.69!142.77!NFIC;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.80!PPARG;;chr1:164528942..164528964,+!p11@PBX1!0.69!3.85!PBX1;;chr6:50786479..50786490,+!p6@TFAP2B!0.69!3.85!TFAP2B;;chr16:54320127..54320148,-!p6@IRX3!0.69!3.85!IRX3;;chr10:119303078..119303169,+!p2@EMX2!0.69!3.85!EMX2;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.70!DPF3;;chr7:42276822..42276895,-!p2@GLI3!0.68!12.60!GLI3;;chr1:164528616..164528660,+!p5@PBX1!0.68!8.40!PBX1;;chr5:178368186..178368238,+!p1@ZNF454!0.68!7.35!ZNF454;;chr6:35464817..35464894,-!p1@TEAD3!0.67!65.44!TEAD3;;chr12:53614115..53614154,-!p1@RARG!0.67!22.40!RARG;;chr17:38465413..38465438,+!p5@RARA!0.67!6.30!RARA;;chr20:55204351..55204377,+!p1@TFAP2C!0.67!4.90!TFAP2C;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.20!CREB3L1;;chr1:8763296..8763339,-!p9@RERE!0.66!9.80!RERE;;chr17:3571887..3571918,-!p2@TAX1BP3!0.65!45.49!TAX1BP3;;chr20:306489..306564,+!p1@SOX12!0.65!43.74!SOX12;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.65!NFIX;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.50!FOXC2;;chr19:1652575..1652621,-!p1@TCF3!0.64!151.87!TCF3;;chr1:8483756..8483809,-!p5@RERE!0.64!10.50!RERE;;chr1:8763463..8763499,-!p6@RERE!0.64!10.50!RERE;;chr8:48650982..48651023,-!p3@CEBPD!0.64!9.45!CEBPD;;chr14:24837368..24837401,+!p1@NFATC4!0.64!8.75!NFATC4;;chr17:46622440..46622477,-!p5@HOXB2!0.64!3.85!HOXB2;;chr22:29196547..29196563,-!p2@XBP1!0.63!144.17!XBP1;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.95!PHB2;;chr17:38498594..38498661,+!p2@RARA!0.63!12.60!RARA;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.65!AEBP1;;chr19:45261550..45261641,+!p6@BCL3!0.63!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11693-123A1
 |is_a=EFO:0002091;;FF:0000188
 |is_obsolete=
 |library_id=CNhs12124
-|library_id_phase_based=1:CNhs12124
+|library_id_phase_based=2:CNhs12124
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11693
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11693
 |name=Trabecular Meshwork Cells, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12124,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11693-123A1;search_select_hide=table117:FF:11693-123A1
 }}

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FF:11693-123A1: Difference between revisions

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Latest revision as of 18:15, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0