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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004707
|accession_numbers=CAGE;DRX008521;DRR009393;DRZ000818;DRZ002203;DRZ012168;DRZ013553
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0002203,UBERON:0001768,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0005969,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001009,UBERON:0003956
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002367
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.04!107.78!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.94!228.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.91!79.79!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.87!89.23!FOXF1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.34!POU3F3;;chr9:132427972..132428056,+!p1@PRRX2!1.70!64.04!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.69!149.42!TWIST2;;chr9:129376233..129376251,+!p2@LMX1B!1.68!47.24!LMX1B;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.64!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.63!41.29!TFAP2B;;chr4:111544219..111544240,-!p1@PITX2!1.62!40.24!PITX2;;chr6:34204921..34204939,+!p3@HMGA1!1.57!1027.41!HMGA1;;chr9:129376201..129376225,+!p1@LMX1B!1.57!36.04!LMX1B;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.69!HIF3A;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.09!TWIST2;;chr20:42543441..42543497,+!p1@TOX2!1.47!123.18!TOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.12!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.99!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.58!NR2F1;;chr17:41622765..41622821,-!p2@ETV4!1.31!29.74!ETV4;;chr5:3595977..3595999,+!p1@IRX1!1.31!19.25!IRX1;;chr20:42543506..42543549,+!p2@TOX2!1.30!45.14!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.29!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.29!19.95!GLIS1;;chr17:41623009..41623053,-!p4@ETV4!1.28!28.69!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.27!43.04!FOXC2;;chr19:45260775..45260838,+!p5@BCL3!1.25!21.70!BCL3;;chr11:63684602..63684664,-!p1@RCOR2!1.23!31.14!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!1.21!64.04!ETV4;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.85!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.20!14.70!SOX11;;chr4:111558135..111558198,-!p2@PITX2!1.19!14.35!PITX2;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.15!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.18!15.40!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!1.17!13.65!IRX1;;chr5:3595961..3595975,+!p3@IRX1!1.17!13.65!IRX1;;chr16:54320101..54320125,-!p4@IRX3!1.16!19.25!IRX3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.20!PRRX1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.16!13.30!POU3F3;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.05!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.15!14.70!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.12!30.44!TWIST1;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.40!TBX2;;chr17:41622834..41622883,-!p6@ETV4!1.10!14.00!ETV4;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.30!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.70!AEBP1;;chr8:60031682..60031710,-!p2@TOX!1.08!17.85!TOX;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.30!NR2F1;;chr5:2751785..2751808,-!p2@IRX2!1.07!10.85!IRX2;;chr12:2986206..2986258,-!p2@FOXM1!1.06!63.34!FOXM1;;chr14:74256787..74256858,-!p6@C14orf43!1.05!10.15!C14orf43;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.35!ZBTB16;;chr8:60031809..60031835,-!p4@TOX!1.04!12.60!TOX;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.54!NR2F1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.35!TOX;;chr15:67418119..67418162,+!p5@SMAD3!1.03!10.85!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!1.03!9.80!ETV4;;chr6:41701581..41701613,-!p2@TFEB!1.03!9.80!TFEB;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1219.87!CEBPD;;chr6:1389789..1389821,+!p1@FOXF2!1.01!12.95!FOXF2;;chr9:77112244..77112262,+!p1@RORB!1.00!10.15!RORB;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.10!NFE2L1;;chr17:17726907..17726958,-!p2@SREBF1!0.99!54.94!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.15!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.15!PBX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.99!8.75!TFAP2B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.99!8.75!RUNX1T1;;chr19:49865646..49865718,-!p1@TEAD2!0.97!74.19!TEAD2;;chr6:41701557..41701578,-!p3@TFEB!0.97!8.40!TFEB;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.90!IRX3;;chr5:92919068..92919082,+!p5@NR2F1!0.96!9.80!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.96!8.05!HIF3A;;chr16:54964899..54964914,+!p2@IRX5!0.94!7.70!IRX5;;chr4:111544254..111544270,-!p3@PITX2!0.94!7.70!PITX2;;chr6:50789717..50789729,+!p4@TFAP2B!0.94!7.70!TFAP2B;;chr5:176738887..176738934,-!p1@MXD3!0.92!50.39!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.92!32.89!PCBP3;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.44!MYBL2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.60!HIC1;;chr17:41623667..41623682,-!p8@ETV4!0.91!7.70!ETV4;;chr6:41703296..41703367,-!p1@TFEB!0.90!37.09!TFEB;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.90!7.00!RUNX1T1;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.75!NR1H3;;chr17:41623259..41623278,-!p7@ETV4!0.89!8.05!ETV4;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.04!GATA2;;chr20:50721803..50721857,-!p2@ZFP64!0.88!10.50!ZFP64;;chr17:41622982..41623001,-!p11@ETV4!0.88!6.65!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.87!9.45!TOX;;chr1:8483878..8483907,-!p4@RERE!0.86!25.55!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.86!17.50!GLI3;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.30!TCF4;;chr11:44331576..44331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|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.04!107.78!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.94!228.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.91!79.79!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.87!89.23!FOXF1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.81!63.34!POU3F3;;chr9:132427972..132428056,+!p1@PRRX2!1.70!64.04!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.69!149.42!TWIST2;;chr9:129376233..129376251,+!p2@LMX1B!1.68!47.24!LMX1B;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.64!IRX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.63!41.29!TFAP2B;;chr4:111544219..111544240,-!p1@PITX2!1.62!40.24!PITX2;;chr6:34204921..34204939,+!p3@HMGA1!1.57!1027.41!HMGA1;;chr9:129376201..129376225,+!p1@LMX1B!1.57!36.04!LMX1B;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.69!HIF3A;;chr2:239756739..239756755,+!p2@TWIST2!1.50!51.09!TWIST2;;chr20:42543441..42543497,+!p1@TOX2!1.47!123.18!TOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.45!136.12!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.34!62.99!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.33!89.58!NR2F1;;chr17:41622765..41622821,-!p2@ETV4!1.31!29.74!ETV4;;chr5:3595977..3595999,+!p1@IRX1!1.31!19.25!IRX1;;chr20:42543506..42543549,+!p2@TOX2!1.30!45.14!TOX2;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.29!ETV4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.29!19.95!GLIS1;;chr17:41623009..41623053,-!p4@ETV4!1.28!28.69!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.27!43.04!FOXC2;;chr19:45260775..45260838,+!p5@BCL3!1.25!21.70!BCL3;;chr11:63684602..63684664,-!p1@RCOR2!1.23!31.14!RCOR2;;chr17:41623692..41623715,-!p1@ETV4!1.21!64.04!ETV4;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.85!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.20!14.70!SOX11;;chr4:111558135..111558198,-!p2@PITX2!1.19!14.35!PITX2;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.15!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.18!15.40!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!1.17!13.65!IRX1;;chr5:3595961..3595975,+!p3@IRX1!1.17!13.65!IRX1;;chr16:54320101..54320125,-!p4@IRX3!1.16!19.25!IRX3;;chr1:170633348..170633399,+!p2@PRRX1!1.16!18.20!PRRX1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.16!13.30!POU3F3;;chr15:57511609..57511651,+!p2@TCF12!1.15!22.05!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.15!14.70!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.12!30.44!TWIST1;;chr17:59477275..59477286,+!p3@TBX2!1.10!15.40!TBX2;;chr17:41622834..41622883,-!p6@ETV4!1.10!14.00!ETV4;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.30!BNC1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.70!AEBP1;;chr8:60031682..60031710,-!p2@TOX!1.08!17.85!TOX;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.30!NR2F1;;chr5:2751785..2751808,-!p2@IRX2!1.07!10.85!IRX2;;chr12:2986206..2986258,-!p2@FOXM1!1.06!63.34!FOXM1;;chr14:74256787..74256858,-!p6@C14orf43!1.05!10.15!C14orf43;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.35!ZBTB16;;chr8:60031809..60031835,-!p4@TOX!1.04!12.60!TOX;;chr5:92918894..92918912,+!p2@NR2F1!1.03!32.54!NR2F1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.35!TOX;;chr15:67418119..67418162,+!p5@SMAD3!1.03!10.85!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!1.03!9.80!ETV4;;chr6:41701581..41701613,-!p2@TFEB!1.03!9.80!TFEB;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1219.87!CEBPD;;chr6:1389789..1389821,+!p1@FOXF2!1.01!12.95!FOXF2;;chr9:77112244..77112262,+!p1@RORB!1.00!10.15!RORB;;chr17:46132044..46132080,+!p4@NFE2L1!1.00!9.10!NFE2L1;;chr17:17726907..17726958,-!p2@SREBF1!0.99!54.94!SREBF1;;chr12:66218255..66218304,+!p3@HMGA2!0.99!24.15!HMGA2;;chr1:164528687..164528711,+!p6@PBX1!0.99!10.15!PBX1;;chr6:50786571..50786590,+!p2@TFAP2B!0.99!8.75!TFAP2B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.99!8.75!RUNX1T1;;chr19:49865646..49865718,-!p1@TEAD2!0.97!74.19!TEAD2;;chr6:41701557..41701578,-!p3@TFEB!0.97!8.40!TFEB;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.90!IRX3;;chr5:92919068..92919082,+!p5@NR2F1!0.96!9.80!NR2F1;;chr19:46800289..46800327,+!p2@HIF3A!0.96!8.05!HIF3A;;chr16:54964899..54964914,+!p2@IRX5!0.94!7.70!IRX5;;chr4:111544254..111544270,-!p3@PITX2!0.94!7.70!PITX2;;chr6:50789717..50789729,+!p4@TFAP2B!0.94!7.70!TFAP2B;;chr5:176738887..176738934,-!p1@MXD3!0.92!50.39!MXD3;;chr21:47063625..47063658,+!p1@PCBP3!0.92!32.89!PCBP3;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.44!MYBL2;;chr17:1959369..1959388,+!p2@HIC1!0.91!19.60!HIC1;;chr17:41623667..41623682,-!p8@ETV4!0.91!7.70!ETV4;;chr6:41703296..41703367,-!p1@TFEB!0.90!37.09!TFEB;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.90!7.00!RUNX1T1;;chr11:47279504..47279563,+!p1@NR1H3!0.89!15.75!NR1H3;;chr17:41623259..41623278,-!p7@ETV4!0.89!8.05!ETV4;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.04!GATA2;;chr20:50721803..50721857,-!p2@ZFP64!0.88!10.50!ZFP64;;chr17:41622982..41623001,-!p11@ETV4!0.88!6.65!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.87!9.45!TOX;;chr1:8483878..8483907,-!p4@RERE!0.86!25.55!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.86!17.50!GLI3;;chr18:52969674..52969685,-!p24@TCF4!0.86!6.30!TCF4;;chr11:44331576..44331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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Trabecular%2520Meshwork%2520Cells%252c%2520donor3.CNhs12124.11693-123A1.hg38.nobarcode.ctss.bed.gz
|id=FF:11693-123A1
|id=FF:11693-123A1
|is_a=EFO:0002091;;FF:0000188
|is_a=EFO:0002091;;FF:0000188
|is_obsolete=
|is_obsolete=
|library_id=CNhs12124
|library_id_phase_based=2:CNhs12124
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11693
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11693
|name=Trabecular Meshwork Cells, donor3
|name=Trabecular Meshwork Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12124,LSID839,release011,COMPLETED
|profile_hcage=CNhs12124,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=123
|rna_box=123
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|rna_catalog_number=SC6595
Line 60: Line 79:
|rna_weight_ug=10
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|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:3423
|sample_cell_catalog=lot:3423
|sample_cell_line=
|sample_cell_line=
Line 81: Line 101:
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|top_motifs=GTF2A1,2:1.88319841324;ZNF423:1.6818799586;TFAP4:1.67237905067;ESR1:1.536207049;ZNF238:1.53194260401;POU2F1..3:1.44316162061;XCPE1{core}:1.402022846;EBF1:1.320322602;SP1:1.17538765223;RXR{A,B,G}:1.16292902005;PBX1:1.07178223291;PATZ1:1.07094855925;NR5A1,2:1.03589606606;GLI1..3:1.0261479524;TFAP2{A,C}:0.999546902406;TFCP2:0.949873924412;GZF1:0.922634976702;ZIC1..3:0.897708154861;TAL1_TCF{3,4,12}:0.897689989086;HOX{A5,B5}:0.890312274165;ZNF148:0.872123218811;bHLH_family:0.840076089329;TLX1..3_NFIC{dimer}:0.801723953713;TFAP2B:0.777435980212;ALX4:0.747591321582;NFY{A,B,C}:0.727464230305;CEBPA,B_DDIT3:0.717577315991;TEAD1:0.70135205419;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.670559682472;GTF2I:0.644069072119;GFI1B:0.639916266916;HIC1:0.632636721909;GFI1:0.600372085306;NANOG{mouse}:0.574380034764;MZF1:0.573657396649;MTF1:0.5657974861;ZNF143:0.556525167788;TFDP1:0.539271733045;NR1H4:0.524599941535;YY1:0.491823176954;LHX3,4:0.464689729845;AR:0.461969050511;TOPORS:0.456187869073;EGR1..3:0.450091595387;RREB1:0.448126553165;NR3C1:0.431476192284;PAX5:0.417547635847;IKZF1:0.416977853028;ZBTB6:0.399373772998;MAZ:0.357690187308;POU5F1:0.354726423924;TBX4,5:0.342238764114;NR6A1:0.3236268043;RXRA_VDR{dimer}:0.32242726099;STAT5{A,B}:0.308506917372;SOX5:0.305265449813;SOX{8,9,10}:0.303733621375;HES1:0.30135870784;NFE2L2:0.301235238314;HNF4A_NR2F1,2:0.295033705464;SOX17:0.278434133816;XBP1:0.265833533745;FOX{I1,J2}:0.261453862185;TBP:0.25945648692;NFE2L1:0.256500211563;LEF1_TCF7_TCF7L1,2:0.245965904234;E2F1..5:0.230939172328;NKX3-1:0.23031051906;SRF:0.225849537615;REST:0.195266034735;TP53:0.1823538901;PAX8:0.152697426961;NKX2-3_NKX2-5:0.0820961398442;KLF4:0.0803040157467;SPZ1:0.0644073606976;NFE2:0.0562303293914;ATF6:0.0455832751802;PAX1,9:0.0263150006102;FOXD3:0.0100775171391;UFEwm:0.0067875744294;HNF1A:0.00140839814713;FOS_FOS{B,L1}_JUN{B,D}:-0.00620684009826;HAND1,2:-0.00621208698612;HLF:-0.0265228831727;BACH2:-0.0279184849064;MYBL2:-0.0302739751951;NKX2-2,8:-0.0396800381951;MED-1{core}:-0.0472643284175;ELK1,4_GABP{A,B1}:-0.0505234297416;CRX:-0.063610217744;RORA:-0.0669451871603;MYOD1:-0.0808639901399;NFIX:-0.0819412876568;ATF4:-0.0830921955153;ESRRA:-0.0871210461793;RFX1:-0.0892226775238;ONECUT1,2:-0.108103005461;MYB:-0.116315520798;LMO2:-0.132059164195;HMX1:-0.147143274304;NFATC1..3:-0.16784581846;EN1,2:-0.168242472254;HOXA9_MEIS1:-0.185385911025;FOSL2:-0.186849289157;NRF1:-0.189248054777;FOXQ1:-0.197316539805;NHLH1,2:-0.205968959929;PAX3,7:-0.249950913139;GCM1,2:-0.250304340063;POU3F1..4:-0.250754637756;POU1F1:-0.255358839349;HOX{A6,A7,B6,B7}:-0.263292028703;MEF2{A,B,C,D}:-0.278758954815;ZNF384:-0.308979880795;FOXL1:-0.314092159228;ARID5B:-0.316102641587;NFKB1_REL_RELA:-0.316418221153;PRRX1,2:-0.318359376457;FOX{F1,F2,J1}:-0.324083717821;BREu{core}:-0.327698531875;STAT2,4,6:-0.336776264846;MTE{core}:-0.354333251483;RUNX1..3:-0.355422047081;EP300:-0.370393245843;MYFfamily:-0.371923777854;AHR_ARNT_ARNT2:-0.388653273413;POU6F1:-0.393527060639;STAT1,3:-0.396405953163;PPARG:-0.403359293215;CUX2:-0.416624714924;GATA6:-0.419056676394;CREB1:-0.42489341898;ZFP161:-0.429480476118;ETS1,2:-0.433875982767;SPI1:-0.443759414667;VSX1,2:-0.459088590474;NANOG:-0.460592071073;SNAI1..3:-0.465447448604;AIRE:-0.472962505845;T:-0.473966385063;DBP:-0.484753480237;TEF:-0.505140951232;JUN:-0.505158683568;ADNP_IRX_SIX_ZHX:-0.522976303346;SPIB:-0.527467641344;PAX4:-0.588744340912;TGIF1:-0.588903588983;ATF2:-0.59283300586;CDC5L:-0.593525932606;NFIL3:-0.608842348737;ELF1,2,4:-0.615842105305;NKX2-1,4:-0.630480914165;HBP1_HMGB_SSRP1_UBTF:-0.648625082006;OCT4_SOX2{dimer}:-0.653345476858;ZEB1:-0.682193043223;GATA4:-0.686759021838;PRDM1:-0.69424039109;SOX2:-0.706131620793;PAX6:-0.742890769903;HOX{A4,D4}:-0.756419884867;TLX2:-0.767059246466;PITX1..3:-0.792081551189;FOXP3:-0.792387384033;HIF1A:-0.816103273848;IRF1,2:-0.841510425591;FOX{D1,D2}:-0.85251321385;CDX1,2,4:-0.853417011344;MAFB:-0.864657939444;FOXO1,3,4:-0.866724787008;IRF7:-0.871600573778;EVI1:-0.878943514171;ATF5_CREB3:-0.905445714422;FOXA2:-0.907747072873;RFX2..5_RFXANK_RFXAP:-0.92682512945;PAX2:-0.932200164283;DMAP1_NCOR{1,2}_SMARC:-0.942639504806;NKX6-1,2:-0.977255743723;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.02455400912;HSF1,2:-1.07361644255;SREBF1,2:-1.07432878486;FOXM1:-1.0754424274;ALX1:-1.12412290867;FOXP1:-1.13285203942;SMAD1..7,9:-1.13407465457;BPTF:-1.19288642352;NKX3-2:-1.21335786677;RBPJ:-1.29414480061;PDX1:-1.31085114066;HMGA1,2:-1.48745099724;IKZF2:-1.90877199914;ZBTB16:-1.96462020608;FOXN1:-2.15546703955
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11693-123A1;search_select_hide=table117:FF:11693-123A1
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Trabecular Meshwork Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12124
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typetrabecular meshwork cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6595
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004707
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12124 CAGE DRX008521 DRR009393
Accession ID Hg19

Library idBAMCTSS
CNhs12124 DRZ000818 DRZ002203
Accession ID Hg38

Library idBAMCTSS
CNhs12124 DRZ012168 DRZ013553
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0578
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0901
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.13
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.13
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0565
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.311
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.13
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.491
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.299
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.3
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.13
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus1.077
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.52
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.13
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.13
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.13
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.13
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.312
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.23
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12124

Jaspar motifP-value
MA0002.20.288
MA0003.10.276
MA0004.10.709
MA0006.10.302
MA0007.10.0912
MA0009.10.167
MA0014.10.937
MA0017.10.854
MA0018.20.51
MA0019.10.902
MA0024.10.0357
MA0025.10.559
MA0027.10.26
MA0028.10.619
MA0029.10.593
MA0030.10.739
MA0031.10.107
MA0035.20.686
MA0038.16.37419e-4
MA0039.20.144
MA0040.10.444
MA0041.10.232
MA0042.10.477
MA0043.10.636
MA0046.10.0242
MA0047.20.62
MA0048.10.0959
MA0050.11.20175e-4
MA0051.10.00457
MA0052.10.395
MA0055.10.00151
MA0057.10.691
MA0058.10.996
MA0059.10.621
MA0060.15.15064e-8
MA0061.10.144
MA0062.20.294
MA0065.20.891
MA0066.10.432
MA0067.10.0619
MA0068.10.293
MA0069.10.76
MA0070.10.00299
MA0071.10.505
MA0072.10.978
MA0073.10.824
MA0074.10.464
MA0076.10.998
MA0077.10.201
MA0078.10.973
MA0079.20.282
MA0080.23.37535e-6
MA0081.10.185
MA0083.10.0466
MA0084.10.115
MA0087.10.494
MA0088.10.609
MA0090.10.265
MA0091.10.254
MA0092.10.756
MA0093.10.786
MA0099.20.74
MA0100.10.556
MA0101.10.346
MA0102.20.16
MA0103.10.263
MA0104.20.284
MA0105.10.154
MA0106.10.642
MA0107.10.258
MA0108.22.90343e-6
MA0111.10.0644
MA0112.20.744
MA0113.10.126
MA0114.10.792
MA0115.10.541
MA0116.10.435
MA0117.10.117
MA0119.10.888
MA0122.10.349
MA0124.10.932
MA0125.10.794
MA0131.10.708
MA0135.10.014
MA0136.14.16934e-5
MA0137.20.251
MA0138.20.525
MA0139.10.691
MA0140.10.917
MA0141.10.5
MA0142.10.547
MA0143.10.0942
MA0144.10.342
MA0145.10.589
MA0146.10.00792
MA0147.10.297
MA0148.10.363
MA0149.10.176
MA0150.10.0294
MA0152.10.885
MA0153.10.134
MA0154.10.711
MA0155.10.133
MA0156.10.0133
MA0157.10.0786
MA0159.10.0685
MA0160.10.889
MA0162.10.253
MA0163.10.947
MA0164.10.821
MA0258.10.944
MA0259.10.508



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12124

Novel motifP-value
10.0889
100.0416
1000.436
1010.0895
1020.895
1030.103
1040.201
1050.243
1060.881
1070.257
1080.372
1090.579
110.74
1100.397
1110.026
1120.393
1130.214
1140.0393
1150.294
1160.526
1170.976
1180.639
1190.224
120.775
1200.354
1210.806
1220.589
1232.97115e-4
1240.148
1250.178
1260.872
1270.405
1280.668
1290.549
130.591
1300.00993
1310.75
1320.228
1330.142
1340.832
1350.145
1360.203
1370.00981
1380.0974
1390.0126
140.623
1400.294
1410.272
1420.193
1430.466
1440.939
1450.929
1460.283
1470.997
1480.0544
1490.965
150.0925
1500.275
1510.95
1520.0693
1530.315
1540.0772
1550.298
1560.845
1570.617
1580.0329
1590.988
160.999
1600.332
1610.764
1620.0933
1630.696
1640.708
1650.0158
1660.815
1670.0391
1680.756
1690.295
170.99
180.862
190.361
20.462
200.994
210.679
220.216
230.388
240.746
250.0643
260.427
270.917
280.106
290.602
30.346
300.163
310.627
320.0034
330.654
340.324
350.268
360.197
370.932
380.744
390.916
40.969
400.287
410.146
420.263
430.48
440.425
450.238
460.673
470.803
480.641
490.223
50.095
500.366
510.989
520.629
530.221
540.865
550.449
560.788
570.262
580.0254
590.147
60.519
600.396
610.895
620.021
630.999
640.665
650.567
660.275
670.353
680.0124
690.316
70.172
700.563
710.0948
720.364
730.0151
740.385
750.768
760.318
770.534
780.35
790.782
80.982
800.589
810.375
820.209
830.44
840.866
850.599
860.823
870.0919
880.361
890.927
90.379
900.00369
910.368
920.203
930.275
940.251
950.196
960.337
970.963
980.67
990.00332



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12124


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002367 (trabecular meshwork cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0002203 (vasculature of eye)
0001768 (uvea)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005969 (reticulum trabeculare)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001009 (circulatory system)
0003956 (aqueous drainage system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000188 (human trabecular meshwork cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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