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{{f5samples
{{f5samples
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor3.CNhs13815.11655-122E8.hg38.nobarcode.bam
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|id=FF:11655-122E8
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Line 44: Line 63:
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|rna_box=122
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Line 54: Line 76:
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Line 69: Line 92:
|sample_ethnicity=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.09558656572233e-251!GO:0043226;organelle;3.16523230611089e-213!GO:0043229;intracellular organelle;1.42268104107597e-212!GO:0043231;intracellular membrane-bound organelle;1.19968408657002e-210!GO:0043227;membrane-bound organelle;1.24576184176116e-210!GO:0005737;cytoplasm;1.34785276509029e-144!GO:0044422;organelle part;1.44973245979673e-133!GO:0044446;intracellular organelle part;3.96512219930702e-132!GO:0032991;macromolecular complex;6.11252969061323e-108!GO:0005634;nucleus;5.65770113293489e-107!GO:0044444;cytoplasmic part;1.59625419109398e-101!GO:0030529;ribonucleoprotein complex;2.17835358608766e-93!GO:0044237;cellular metabolic process;2.47340617389399e-84!GO:0043170;macromolecule metabolic process;2.78132821334429e-83!GO:0044238;primary metabolic process;3.54538080420978e-82!GO:0003723;RNA binding;2.36119248861335e-75!GO:0044428;nuclear part;4.63012522521278e-70!GO:0005515;protein binding;8.65209353034808e-67!GO:0043233;organelle lumen;4.26943810103318e-65!GO:0031974;membrane-enclosed lumen;4.26943810103318e-65!GO:0010467;gene expression;9.47060737660459e-64!GO:0016043;cellular component organization and biogenesis;6.35020067370269e-62!GO:0043283;biopolymer metabolic process;1.32226896126448e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32122791937449e-57!GO:0005739;mitochondrion;7.68331405882376e-56!GO:0005840;ribosome;4.12853169418111e-55!GO:0043234;protein complex;4.066641743762e-54!GO:0006396;RNA processing;1.90728568564594e-51!GO:0003735;structural constituent of ribosome;7.32877589035227e-49!GO:0006412;translation;9.73069115791379e-45!GO:0003676;nucleic acid binding;2.5827129531252e-44!GO:0031981;nuclear lumen;1.65664013092647e-42!GO:0033279;ribosomal subunit;5.08089796289799e-42!GO:0016071;mRNA metabolic process;1.37149459311982e-41!GO:0008380;RNA splicing;2.94914766223911e-41!GO:0031090;organelle membrane;4.44769612000222e-41!GO:0006996;organelle organization and biogenesis;7.9549540293766e-40!GO:0033036;macromolecule localization;2.70424578011636e-39!GO:0044429;mitochondrial part;3.14966279266861e-39!GO:0015031;protein transport;3.23212828828744e-38!GO:0006397;mRNA processing;2.07352967355345e-37!GO:0043228;non-membrane-bound organelle;5.62880273427883e-36!GO:0043232;intracellular non-membrane-bound organelle;5.62880273427883e-36!GO:0008104;protein localization;1.52458657487496e-35!GO:0016070;RNA metabolic process;2.06768804834002e-35!GO:0031967;organelle envelope;7.31705398929604e-35!GO:0031975;envelope;1.05475708262009e-34!GO:0045184;establishment of protein localization;1.49436125241309e-34!GO:0046907;intracellular transport;1.98247529882951e-32!GO:0019538;protein metabolic process;2.91582983062117e-31!GO:0065003;macromolecular complex assembly;3.76300105260301e-31!GO:0009059;macromolecule biosynthetic process;1.03475866906472e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.13056962761367e-30!GO:0005829;cytosol;3.94299002409221e-30!GO:0006259;DNA metabolic process;4.8226686371163e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.71470711669642e-29!GO:0044249;cellular biosynthetic process;2.11741756492239e-29!GO:0044267;cellular protein metabolic process;7.50918331039011e-29!GO:0044260;cellular macromolecule metabolic process;1.07946824015826e-28!GO:0005681;spliceosome;1.23404453170401e-28!GO:0009058;biosynthetic process;1.57453526773194e-28!GO:0022607;cellular component assembly;9.16588478402769e-28!GO:0006886;intracellular protein transport;2.95428865198529e-25!GO:0006119;oxidative phosphorylation;5.80648843055282e-25!GO:0005740;mitochondrial envelope;5.89794411771325e-25!GO:0019866;organelle inner membrane;8.17786086869639e-25!GO:0005654;nucleoplasm;8.47369689493738e-25!GO:0051649;establishment of cellular localization;3.38914250947685e-24!GO:0031966;mitochondrial membrane;6.55916741284101e-24!GO:0051641;cellular localization;9.17382468896518e-24!GO:0044445;cytosolic part;2.12370853622708e-23!GO:0005743;mitochondrial inner membrane;2.2188745330205e-22!GO:0044455;mitochondrial membrane part;2.50783322392954e-22!GO:0015934;large ribosomal subunit;1.53722968855053e-21!GO:0015935;small ribosomal subunit;1.60253257816221e-21!GO:0044451;nucleoplasm part;7.07639915542155e-21!GO:0005746;mitochondrial respiratory chain;3.04876970458693e-19!GO:0016462;pyrophosphatase activity;5.019098185438e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.13049514878506e-19!GO:0017111;nucleoside-triphosphatase activity;8.56313697260691e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.07935488207144e-18!GO:0022618;protein-RNA complex assembly;1.73053213867264e-18!GO:0005694;chromosome;3.20215124639378e-18!GO:0051276;chromosome organization and biogenesis;4.80138322703745e-18!GO:0050136;NADH dehydrogenase (quinone) activity;4.80138322703745e-18!GO:0003954;NADH dehydrogenase activity;4.80138322703745e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.80138322703745e-18!GO:0007049;cell cycle;6.81962095683711e-18!GO:0000166;nucleotide binding;8.80964239291187e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;1.10979022840757e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.21413957167454e-17!GO:0005730;nucleolus;4.21504104382234e-17!GO:0006323;DNA packaging;7.27694880996664e-17!GO:0031980;mitochondrial lumen;8.18587868255607e-17!GO:0005759;mitochondrial matrix;8.18587868255607e-17!GO:0008135;translation factor activity, nucleic acid binding;2.93240381360012e-16!GO:0044427;chromosomal part;4.73537830745956e-16!GO:0030964;NADH dehydrogenase complex (quinone);6.54284590991204e-16!GO:0045271;respiratory chain complex I;6.54284590991204e-16!GO:0005747;mitochondrial respiratory chain complex I;6.54284590991204e-16!GO:0005761;mitochondrial ribosome;6.74600473251091e-16!GO:0000313;organellar ribosome;6.74600473251091e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.70263466359832e-16!GO:0006512;ubiquitin cycle;1.00636900970282e-15!GO:0012505;endomembrane system;1.52189982367612e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.63677081294998e-15!GO:0042773;ATP synthesis coupled electron transport;1.63677081294998e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.23987925201851e-15!GO:0006457;protein folding;2.37798346079302e-15!GO:0016874;ligase activity;1.35625599268403e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.66341431217919e-14!GO:0006974;response to DNA damage stimulus;1.98254500301085e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.07893110882896e-14!GO:0000375;RNA splicing, via transesterification reactions;3.07893110882896e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.07893110882896e-14!GO:0065004;protein-DNA complex assembly;4.29750960027275e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.48304828239344e-14!GO:0006333;chromatin assembly or disassembly;5.8562003054056e-14!GO:0008134;transcription factor binding;7.12047396823294e-14!GO:0005794;Golgi apparatus;1.85373767740073e-13!GO:0003743;translation initiation factor activity;2.48090589220289e-13!GO:0050794;regulation of cellular process;3.58030464906955e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.0016420133567e-13!GO:0022402;cell cycle process;7.68172920621581e-13!GO:0042254;ribosome biogenesis and assembly;1.34859184914108e-12!GO:0000785;chromatin;1.36085915630633e-12!GO:0019222;regulation of metabolic process;2.27282300940162e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.5793977486692e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.00624806863377e-12!GO:0019941;modification-dependent protein catabolic process;3.35515809537496e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.35515809537496e-12!GO:0006605;protein targeting;3.64717254099919e-12!GO:0044265;cellular macromolecule catabolic process;4.88248232755444e-12!GO:0006281;DNA repair;5.92150741898084e-12!GO:0006413;translational initiation;6.13659983684112e-12!GO:0006334;nucleosome assembly;6.54046139689735e-12!GO:0044257;cellular protein catabolic process;6.54046139689735e-12!GO:0051082;unfolded protein binding;8.01151556601395e-12!GO:0031965;nuclear membrane;8.77563879208118e-12!GO:0032553;ribonucleotide binding;9.54849819097964e-12!GO:0032555;purine ribonucleotide binding;9.54849819097964e-12!GO:0016192;vesicle-mediated transport;1.06794031017867e-11!GO:0050789;regulation of biological process;1.63269979652638e-11!GO:0048193;Golgi vesicle transport;2.24281324690214e-11!GO:0044453;nuclear membrane part;2.44703657051342e-11!GO:0048770;pigment granule;2.46715393072288e-11!GO:0042470;melanosome;2.46715393072288e-11!GO:0015630;microtubule cytoskeleton;2.99949772208766e-11!GO:0043285;biopolymer catabolic process;3.70137550953341e-11!GO:0000278;mitotic cell cycle;3.79628027856971e-11!GO:0031497;chromatin assembly;4.04017133369659e-11!GO:0051186;cofactor metabolic process;5.3691309103115e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.0919073747308e-10!GO:0005635;nuclear envelope;1.40634131878945e-10!GO:0008565;protein transporter activity;2.38961559303927e-10!GO:0006350;transcription;2.69487194231687e-10!GO:0030163;protein catabolic process;3.47033632770704e-10!GO:0017076;purine nucleotide binding;3.93218599196643e-10!GO:0006260;DNA replication;4.22781541640963e-10!GO:0005643;nuclear pore;5.80711842508001e-10!GO:0042623;ATPase activity, coupled;8.38276360114418e-10!GO:0009057;macromolecule catabolic process;9.2661732703196e-10!GO:0043412;biopolymer modification;9.63636428611389e-10!GO:0016887;ATPase activity;1.1015464874844e-09!GO:0006446;regulation of translational initiation;1.24107131651716e-09!GO:0006913;nucleocytoplasmic transport;1.36115934808987e-09!GO:0016604;nuclear body;1.85481236551859e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92662216360072e-09!GO:0031323;regulation of cellular metabolic process;2.47706352770821e-09!GO:0006732;coenzyme metabolic process;3.12370195273018e-09!GO:0051169;nuclear transport;3.53631898896641e-09!GO:0006366;transcription from RNA polymerase II promoter;3.92530258808788e-09!GO:0019829;cation-transporting ATPase activity;6.4393160655797e-09!GO:0009719;response to endogenous stimulus;6.51749965368893e-09!GO:0009259;ribonucleotide metabolic process;7.65004508562034e-09!GO:0006403;RNA localization;8.01598789136754e-09!GO:0032774;RNA biosynthetic process;9.44766968056627e-09!GO:0015986;ATP synthesis coupled proton transport;1.01856364000545e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.01856364000545e-08!GO:0006351;transcription, DNA-dependent;1.13364780260797e-08!GO:0050657;nucleic acid transport;1.24315529676557e-08!GO:0051236;establishment of RNA localization;1.24315529676557e-08!GO:0050658;RNA transport;1.24315529676557e-08!GO:0016607;nuclear speck;1.25228237687448e-08!GO:0008639;small protein conjugating enzyme activity;1.36789008143053e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.40129779089826e-08!GO:0005524;ATP binding;1.43726428498143e-08!GO:0006464;protein modification process;1.48690083831645e-08!GO:0006364;rRNA processing;1.62449647245423e-08!GO:0006163;purine nucleotide metabolic process;1.63791461966157e-08!GO:0000087;M phase of mitotic cell cycle;1.74838082520131e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.28925045532223e-08!GO:0010468;regulation of gene expression;2.28925045532223e-08!GO:0032559;adenyl ribonucleotide binding;2.29912684228423e-08!GO:0004842;ubiquitin-protein ligase activity;2.3184561364218e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.57167739386319e-08!GO:0007067;mitosis;2.57167739386319e-08!GO:0009150;purine ribonucleotide metabolic process;3.32372482479878e-08!GO:0016072;rRNA metabolic process;3.38679218417735e-08!GO:0009141;nucleoside triphosphate metabolic process;3.55740203463253e-08!GO:0005783;endoplasmic reticulum;3.8217386822097e-08!GO:0004386;helicase activity;3.8687590436365e-08!GO:0003712;transcription cofactor activity;4.35605945391923e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.56481448475891e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.56481448475891e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.68563308187023e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.68563308187023e-08!GO:0051301;cell division;4.75168924757554e-08!GO:0019787;small conjugating protein ligase activity;5.04966287596054e-08!GO:0051726;regulation of cell cycle;5.21453614725009e-08!GO:0006164;purine nucleotide biosynthetic process;6.06809405748956e-08!GO:0009055;electron carrier activity;6.15013412356957e-08!GO:0000074;regulation of progression through cell cycle;6.88477814937197e-08!GO:0009260;ribonucleotide biosynthetic process;7.17808808665921e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.58917972479135e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.58917972479135e-08!GO:0044248;cellular catabolic process;8.61497242346766e-08!GO:0022403;cell cycle phase;9.20496345387379e-08!GO:0009060;aerobic respiration;9.52043542895947e-08!GO:0043687;post-translational protein modification;1.02141782702956e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.18669731268136e-07!GO:0008026;ATP-dependent helicase activity;1.20300934579199e-07!GO:0003924;GTPase activity;1.2309638482326e-07!GO:0006399;tRNA metabolic process;1.35571141539532e-07!GO:0046034;ATP metabolic process;1.4114420515304e-07!GO:0006754;ATP biosynthetic process;1.94757016881254e-07!GO:0006753;nucleoside phosphate metabolic process;1.94757016881254e-07!GO:0016568;chromatin modification;2.17949546568461e-07!GO:0065002;intracellular protein transport across a membrane;2.19941981124025e-07!GO:0015631;tubulin binding;2.4113194944013e-07!GO:0044432;endoplasmic reticulum part;2.45099903043869e-07!GO:0017038;protein import;2.9034562004991e-07!GO:0045333;cellular respiration;3.06453760659361e-07!GO:0046930;pore complex;3.16742821558855e-07!GO:0045449;regulation of transcription;3.38165487497986e-07!GO:0051028;mRNA transport;3.98240458118972e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.85861240650142e-07!GO:0048523;negative regulation of cellular process;5.30196350536422e-07!GO:0044431;Golgi apparatus part;6.0815614899032e-07!GO:0005874;microtubule;6.93794634425943e-07!GO:0003677;DNA binding;7.25395821711288e-07!GO:0030554;adenyl nucleotide binding;7.28020186414597e-07!GO:0000786;nucleosome;7.80339030627586e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.25104953190986e-07!GO:0007010;cytoskeleton organization and biogenesis;9.61165328350142e-07!GO:0045259;proton-transporting ATP synthase complex;1.0488854098059e-06!GO:0000245;spliceosome assembly;1.08395523458533e-06!GO:0006355;regulation of transcription, DNA-dependent;1.08634285800516e-06!GO:0016881;acid-amino acid ligase activity;1.17447438108994e-06!GO:0032446;protein modification by small protein conjugation;1.53829018022451e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.63145090850988e-06!GO:0031988;membrane-bound vesicle;1.73765793560529e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.77210732826154e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.84307136587027e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.84307136587027e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.84307136587027e-06!GO:0005762;mitochondrial large ribosomal subunit;2.08863658713938e-06!GO:0000315;organellar large ribosomal subunit;2.08863658713938e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.21478176293568e-06!GO:0005667;transcription factor complex;2.94525604607592e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.97549757043782e-06!GO:0051188;cofactor biosynthetic process;3.00177232742312e-06!GO:0043566;structure-specific DNA binding;3.34984718531369e-06!GO:0016567;protein ubiquitination;3.85969159905732e-06!GO:0065007;biological regulation;4.33700976458768e-06!GO:0007017;microtubule-based process;4.45881253081271e-06!GO:0000279;M phase;4.84318230753143e-06!GO:0006099;tricarboxylic acid cycle;4.9389445878071e-06!GO:0046356;acetyl-CoA catabolic process;4.9389445878071e-06!GO:0005793;ER-Golgi intermediate compartment;5.16647378657056e-06!GO:0006752;group transfer coenzyme metabolic process;5.74876616889228e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.10147077243229e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.38281337451486e-06!GO:0043038;amino acid activation;6.60690726754763e-06!GO:0006418;tRNA aminoacylation for protein translation;6.60690726754763e-06!GO:0043039;tRNA aminoacylation;6.60690726754763e-06!GO:0003697;single-stranded DNA binding;6.84547877692813e-06!GO:0007005;mitochondrion organization and biogenesis;7.28632801072815e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.88394834467402e-06!GO:0005525;GTP binding;9.45962402133159e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.67715452463756e-06!GO:0048519;negative regulation of biological process;1.0124236612189e-05!GO:0031982;vesicle;1.02527509123237e-05!GO:0016363;nuclear matrix;1.09805309116677e-05!GO:0003729;mRNA binding;1.17005640316589e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.27250314091792e-05!GO:0016564;transcription repressor activity;1.28021406921773e-05!GO:0006461;protein complex assembly;1.38359372513729e-05!GO:0006084;acetyl-CoA metabolic process;1.46797972092937e-05!GO:0043623;cellular protein complex assembly;1.54141833686863e-05!GO:0048475;coated membrane;1.58713423728875e-05!GO:0030117;membrane coat;1.58713423728875e-05!GO:0031410;cytoplasmic vesicle;1.77103481097232e-05!GO:0005768;endosome;1.82658711313082e-05!GO:0009108;coenzyme biosynthetic process;1.90233539994198e-05!GO:0005789;endoplasmic reticulum membrane;1.93267264431396e-05!GO:0000902;cell morphogenesis;2.78671003546387e-05!GO:0032989;cellular structure morphogenesis;2.78671003546387e-05!GO:0006793;phosphorus metabolic process;2.95499494645129e-05!GO:0006796;phosphate metabolic process;2.95499494645129e-05!GO:0000139;Golgi membrane;2.97152125832676e-05!GO:0006613;cotranslational protein targeting to membrane;3.44643563683469e-05!GO:0008017;microtubule binding;3.58218139012528e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.8386473917467e-05!GO:0051427;hormone receptor binding;4.21703747647096e-05!GO:0009109;coenzyme catabolic process;4.29280860112322e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.18701730891408e-05!GO:0000314;organellar small ribosomal subunit;5.18916376893749e-05!GO:0005763;mitochondrial small ribosomal subunit;5.18916376893749e-05!GO:0003724;RNA helicase activity;5.20490615712295e-05!GO:0030120;vesicle coat;5.25481025262677e-05!GO:0030662;coated vesicle membrane;5.25481025262677e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.1321016754116e-05!GO:0004298;threonine endopeptidase activity;6.32961399463384e-05!GO:0051187;cofactor catabolic process;7.19933609423427e-05!GO:0006261;DNA-dependent DNA replication;7.28872356244409e-05!GO:0003899;DNA-directed RNA polymerase activity;7.46946738276555e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;7.56495861721881e-05!GO:0045045;secretory pathway;7.75145003645973e-05!GO:0031324;negative regulation of cellular metabolic process;8.71093549043037e-05!GO:0035257;nuclear hormone receptor binding;8.71238563245072e-05!GO:0003714;transcription corepressor activity;8.97190061777368e-05!GO:0019843;rRNA binding;8.98885806182315e-05!GO:0009892;negative regulation of metabolic process;8.98985127903635e-05!GO:0016310;phosphorylation;9.23146358046061e-05!GO:0032561;guanyl ribonucleotide binding;9.68538669754956e-05!GO:0019001;guanyl nucleotide binding;9.68538669754956e-05!GO:0045786;negative regulation of progression through cell cycle;0.000104252464191324!GO:0051170;nuclear import;0.000109225066037993!GO:0005905;coated pit;0.000114557506500969!GO:0031252;leading edge;0.000114557506500969!GO:0051246;regulation of protein metabolic process;0.000123680626584065!GO:0006606;protein import into nucleus;0.000124935987494868!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000127128979536285!GO:0043069;negative regulation of programmed cell death;0.000132786508492162!GO:0005813;centrosome;0.000143896429573805!GO:0006414;translational elongation;0.000153878552041308!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000160159493887182!GO:0008092;cytoskeletal protein binding;0.000162296474351294!GO:0043066;negative regulation of apoptosis;0.000165697639422916!GO:0051168;nuclear export;0.000173143454052254!GO:0006916;anti-apoptosis;0.000182853066997401!GO:0008361;regulation of cell size;0.000187098728039865!GO:0016049;cell growth;0.000205942046224959!GO:0005815;microtubule organizing center;0.000229516441588895!GO:0048471;perinuclear region of cytoplasm;0.000246865511250579!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000268611100764945!GO:0012501;programmed cell death;0.000314115359641497!GO:0043021;ribonucleoprotein binding;0.000316354771794163!GO:0008270;zinc ion binding;0.000316354771794163!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000338330584430504!GO:0005657;replication fork;0.000350693837128869!GO:0031124;mRNA 3'-end processing;0.000351680732905881!GO:0006915;apoptosis;0.000378438032032728!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000415296270336005!GO:0016126;sterol biosynthetic process;0.000419115204395861!GO:0003682;chromatin binding;0.000448225275868475!GO:0016481;negative regulation of transcription;0.000452563383946776!GO:0003713;transcription coactivator activity;0.000493411947362314!GO:0044452;nucleolar part;0.000538827184026291!GO:0005875;microtubule associated complex;0.000542398762481697!GO:0005770;late endosome;0.000542398762481697!GO:0005819;spindle;0.000548085600932769!GO:0000775;chromosome, pericentric region;0.000564126823301734!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000579085297900157!GO:0009117;nucleotide metabolic process;0.000580080751722315!GO:0000151;ubiquitin ligase complex;0.000598248970418802!GO:0016779;nucleotidyltransferase activity;0.000642860973154258!GO:0004576;oligosaccharyl transferase activity;0.000744905694358389!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00075775116319025!GO:0015399;primary active transmembrane transporter activity;0.00075775116319025!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000814899682023039!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000814899682023039!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000814899682023039!GO:0044440;endosomal part;0.000829759274760255!GO:0010008;endosome membrane;0.000829759274760255!GO:0008186;RNA-dependent ATPase activity;0.00085561045232174!GO:0043681;protein import into mitochondrion;0.000859653375388395!GO:0008250;oligosaccharyl transferase complex;0.000872128391321453!GO:0051920;peroxiredoxin activity;0.000875341213507048!GO:0009056;catabolic process;0.000977162483256788!GO:0008219;cell death;0.000985712934411013!GO:0016265;death;0.000985712934411013!GO:0051128;regulation of cellular component organization and biogenesis;0.0011653414711216!GO:0005798;Golgi-associated vesicle;0.00119324141530736!GO:0001558;regulation of cell growth;0.00120106758238315!GO:0008654;phospholipid biosynthetic process;0.00122405670438011!GO:0051329;interphase of mitotic cell cycle;0.00138610535867071!GO:0003690;double-stranded DNA binding;0.00138670742923775!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00143522832321537!GO:0006695;cholesterol biosynthetic process;0.0014807099143741!GO:0006352;transcription initiation;0.00168592987220121!GO:0003684;damaged DNA binding;0.00199942083941116!GO:0050767;regulation of neurogenesis;0.00203117782787928!GO:0007399;nervous system development;0.00207482476642918!GO:0000059;protein import into nucleus, docking;0.00214726858033819!GO:0000776;kinetochore;0.00214726858033819!GO:0005769;early endosome;0.00216000219536813!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00232015169316192!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00232015169316192!GO:0031123;RNA 3'-end processing;0.00234747552532351!GO:0004004;ATP-dependent RNA helicase activity;0.00242179872748168!GO:0048500;signal recognition particle;0.00242179872748168!GO:0005637;nuclear inner membrane;0.00244267202952772!GO:0006612;protein targeting to membrane;0.00248364427358234!GO:0006626;protein targeting to mitochondrion;0.00257742232150258!GO:0008139;nuclear localization sequence binding;0.00260581889639267!GO:0051087;chaperone binding;0.00260581889639267!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00268604857340885!GO:0016853;isomerase activity;0.00268910384476868!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00279194610119539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00282857104836187!GO:0006383;transcription from RNA polymerase III promoter;0.00295027245131069!GO:0051325;interphase;0.00301920665450644!GO:0005048;signal sequence binding;0.00302770115866935!GO:0006891;intra-Golgi vesicle-mediated transport;0.00308516157438095!GO:0005885;Arp2/3 protein complex;0.00320519745369401!GO:0006818;hydrogen transport;0.00331457604527761!GO:0005869;dynactin complex;0.00332382452511244!GO:0045454;cell redox homeostasis;0.00336443557001587!GO:0016044;membrane organization and biogenesis;0.003392693337267!GO:0031072;heat shock protein binding;0.00340700484280876!GO:0008287;protein serine/threonine phosphatase complex;0.00349604737477914!GO:0006595;polyamine metabolic process;0.00356977063663227!GO:0048468;cell development;0.00357356626722657!GO:0015992;proton transport;0.00366064028081412!GO:0048487;beta-tubulin binding;0.00368037236023758!GO:0030027;lamellipodium;0.00378444531367767!GO:0006378;mRNA polyadenylation;0.00391439261515046!GO:0007051;spindle organization and biogenesis;0.00393990824355909!GO:0016272;prefoldin complex;0.00402198586467158!GO:0016251;general RNA polymerase II transcription factor activity;0.00412655167583398!GO:0007006;mitochondrial membrane organization and biogenesis;0.00431152804606762!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00440107008608714!GO:0003746;translation elongation factor activity;0.00464035981446303!GO:0051789;response to protein stimulus;0.00470369046461259!GO:0006986;response to unfolded protein;0.00470369046461259!GO:0018196;peptidyl-asparagine modification;0.00475180195746279!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00475180195746279!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00507027142841004!GO:0030118;clathrin coat;0.00519302635482717!GO:0005684;U2-dependent spliceosome;0.00527737222870608!GO:0033116;ER-Golgi intermediate compartment membrane;0.00536532658886163!GO:0008312;7S RNA binding;0.00542347378185005!GO:0016563;transcription activator activity;0.00557137182944913!GO:0008180;signalosome;0.00559287870183749!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00575660157057836!GO:0019899;enzyme binding;0.00580197751446823!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00582859848779672!GO:0045047;protein targeting to ER;0.00582859848779672!GO:0006402;mRNA catabolic process;0.0060440439095165!GO:0006839;mitochondrial transport;0.00606922249186244!GO:0006302;double-strand break repair;0.00615781620174647!GO:0016197;endosome transport;0.00663109499446328!GO:0030182;neuron differentiation;0.00666062633917346!GO:0016859;cis-trans isomerase activity;0.00667621409567994!GO:0005788;endoplasmic reticulum lumen;0.00669804236453994!GO:0016740;transferase activity;0.00697891433637548!GO:0030036;actin cytoskeleton organization and biogenesis;0.00702875484214489!GO:0032940;secretion by cell;0.00706010061271773!GO:0019887;protein kinase regulator activity;0.00720720810307052!GO:0006405;RNA export from nucleus;0.00720720810307052!GO:0008033;tRNA processing;0.00744219906300725!GO:0015980;energy derivation by oxidation of organic compounds;0.00746330622141071!GO:0045892;negative regulation of transcription, DNA-dependent;0.00779857836593061!GO:0030880;RNA polymerase complex;0.00806960564173401!GO:0008094;DNA-dependent ATPase activity;0.00836599216771714!GO:0022008;neurogenesis;0.00843055798461137!GO:0016584;nucleosome positioning;0.00863558185967012!GO:0005741;mitochondrial outer membrane;0.00885142671907907!GO:0030427;site of polarized growth;0.00920317925950664!GO:0046914;transition metal ion binding;0.00935355180611767!GO:0030176;integral to endoplasmic reticulum membrane;0.00939864065787379!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00969291139638416!GO:0008320;protein transmembrane transporter activity;0.00990894510737069!GO:0030867;rough endoplasmic reticulum membrane;0.00993535624859925!GO:0048699;generation of neurons;0.0100463949760697!GO:0030521;androgen receptor signaling pathway;0.0102588948030998!GO:0031968;organelle outer membrane;0.0107035331966009!GO:0051252;regulation of RNA metabolic process;0.0110080165653488!GO:0043492;ATPase activity, coupled to movement of substances;0.0111483059682144!GO:0006338;chromatin remodeling;0.0111742581397526!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0113287160768558!GO:0009165;nucleotide biosynthetic process;0.011415225975538!GO:0005832;chaperonin-containing T-complex;0.0115683529879727!GO:0007021;tubulin folding;0.0115943587711759!GO:0000339;RNA cap binding;0.0117497152975188!GO:0031901;early endosome membrane;0.0119332034424563!GO:0051539;4 iron, 4 sulfur cluster binding;0.0120042482729006!GO:0000159;protein phosphatase type 2A complex;0.0121486803186294!GO:0040008;regulation of growth;0.0123113456066504!GO:0019207;kinase regulator activity;0.0124851809272852!GO:0003711;transcription elongation regulator activity;0.0125836798886534!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0126781204553465!GO:0015002;heme-copper terminal oxidase activity;0.0126781204553465!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0126781204553465!GO:0004129;cytochrome-c oxidase activity;0.0126781204553465!GO:0000049;tRNA binding;0.0128550563759414!GO:0043624;cellular protein complex disassembly;0.0129257283318477!GO:0030426;growth cone;0.013049360618724!GO:0046474;glycerophospholipid biosynthetic process;0.0131645600587091!GO:0005876;spindle microtubule;0.0132090306016532!GO:0040029;regulation of gene expression, epigenetic;0.0133196912374452!GO:0043488;regulation of mRNA stability;0.0133239582768031!GO:0043487;regulation of RNA stability;0.0133239582768031!GO:0042585;germinal vesicle;0.013343373471135!GO:0019867;outer membrane;0.0134136584020825!GO:0030137;COPI-coated vesicle;0.0137246502034882!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0144533639634747!GO:0001726;ruffle;0.0145845660988118!GO:0051052;regulation of DNA metabolic process;0.0157672944349057!GO:0009116;nucleoside metabolic process;0.0162150688805987!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0163347198509073!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0168083154991216!GO:0000428;DNA-directed RNA polymerase complex;0.0168083154991216!GO:0006650;glycerophospholipid metabolic process;0.0168785585001875!GO:0016585;chromatin remodeling complex;0.0174222624659174!GO:0008022;protein C-terminus binding;0.0174777717630253!GO:0000082;G1/S transition of mitotic cell cycle;0.0184323346113176!GO:0007052;mitotic spindle organization and biogenesis;0.0184582655297315!GO:0000792;heterochromatin;0.0185630223919175!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0187792962863679!GO:0006401;RNA catabolic process;0.0190746605399859!GO:0050770;regulation of axonogenesis;0.0193005392942!GO:0007264;small GTPase mediated signal transduction;0.0193634437799011!GO:0006611;protein export from nucleus;0.019383618798819!GO:0007019;microtubule depolymerization;0.0196802616699385!GO:0035258;steroid hormone receptor binding;0.0197901379610269!GO:0042981;regulation of apoptosis;0.0198122691074715!GO:0043022;ribosome binding;0.0199706601086465!GO:0030384;phosphoinositide metabolic process;0.0202628146037471!GO:0032508;DNA duplex unwinding;0.0212980298140301!GO:0032392;DNA geometric change;0.0212980298140301!GO:0051540;metal cluster binding;0.0218804893611256!GO:0051536;iron-sulfur cluster binding;0.0218804893611256!GO:0006607;NLS-bearing substrate import into nucleus;0.0219464933938343!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0220612145151653!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0221319006918258!GO:0043067;regulation of programmed cell death;0.0221319006918258!GO:0030663;COPI coated vesicle membrane;0.0224357827664179!GO:0030126;COPI vesicle coat;0.0224357827664179!GO:0032984;macromolecular complex disassembly;0.0227632484531644!GO:0046467;membrane lipid biosynthetic process;0.0228088046306683!GO:0006376;mRNA splice site selection;0.0228088046306683!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0228088046306683!GO:0000209;protein polyubiquitination;0.0228844759177519!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0228844759177519!GO:0055083;monovalent inorganic anion homeostasis;0.0228844759177519!GO:0055064;chloride ion homeostasis;0.0228844759177519!GO:0030644;cellular chloride ion homeostasis;0.0228844759177519!GO:0008601;protein phosphatase type 2A regulator activity;0.0229419422745272!GO:0022884;macromolecule transmembrane transporter activity;0.0229597282135782!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0229597282135782!GO:0022890;inorganic cation transmembrane transporter activity;0.0239685574082095!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0242167225351115!GO:0003678;DNA helicase activity;0.025316127705295!GO:0031902;late endosome membrane;0.0258179573868044!GO:0031371;ubiquitin conjugating enzyme complex;0.0258951423350815!GO:0030133;transport vesicle;0.0261962633634226!GO:0004448;isocitrate dehydrogenase activity;0.0269189737590403!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0282592110653953!GO:0010257;NADH dehydrogenase complex assembly;0.0282592110653953!GO:0033108;mitochondrial respiratory chain complex assembly;0.0282592110653953!GO:0043631;RNA polyadenylation;0.0287211456267601!GO:0000096;sulfur amino acid metabolic process;0.0288535848087076!GO:0000904;cellular morphogenesis during differentiation;0.029049106317943!GO:0030658;transport vesicle membrane;0.0294438052572222!GO:0000118;histone deacetylase complex;0.0307377032388657!GO:0000075;cell cycle checkpoint;0.0317504801247029!GO:0031529;ruffle organization and biogenesis;0.0322157434153657!GO:0046489;phosphoinositide biosynthetic process;0.0323975426587893!GO:0031109;microtubule polymerization or depolymerization;0.0328029174118367!GO:0007050;cell cycle arrest;0.0328029174118367!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0328501380848212!GO:0006360;transcription from RNA polymerase I promoter;0.0331938442780283!GO:0005758;mitochondrial intermembrane space;0.0335708107503216!GO:0005652;nuclear lamina;0.0337432431879911!GO:0030496;midbody;0.0339577273841826!GO:0043241;protein complex disassembly;0.0347613365725999!GO:0030029;actin filament-based process;0.0352395998272352!GO:0005669;transcription factor TFIID complex;0.0352395998272352!GO:0046128;purine ribonucleoside metabolic process;0.0355634927570897!GO:0042278;purine nucleoside metabolic process;0.0355634927570897!GO:0043284;biopolymer biosynthetic process;0.0357326480094766!GO:0012506;vesicle membrane;0.0358368001652172!GO:0032259;methylation;0.0362202429314997!GO:0044433;cytoplasmic vesicle part;0.0363272880467077!GO:0008286;insulin receptor signaling pathway;0.0366142234836427!GO:0003702;RNA polymerase II transcription factor activity;0.0374835909155255!GO:0003730;mRNA 3'-UTR binding;0.0382911295429115!GO:0005791;rough endoplasmic reticulum;0.0385893844241518!GO:0031970;organelle envelope lumen;0.0388986829587738!GO:0005521;lamin binding;0.0391336999907384!GO:0050769;positive regulation of neurogenesis;0.0396485487396908!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0397999495159484!GO:0005784;translocon complex;0.0399230065638956!GO:0005881;cytoplasmic microtubule;0.0403161849916535!GO:0030132;clathrin coat of coated pit;0.0403161849916535!GO:0019208;phosphatase regulator activity;0.0404050142542766!GO:0030508;thiol-disulfide exchange intermediate activity;0.0406532794257701!GO:0004860;protein kinase inhibitor activity;0.0415128001415134!GO:0006268;DNA unwinding during replication;0.0416153447733399!GO:0030911;TPR domain binding;0.041862850153166!GO:0031301;integral to organelle membrane;0.0420314496586602!GO:0048667;neuron morphogenesis during differentiation;0.0424642012907774!GO:0048812;neurite morphogenesis;0.0424642012907774!GO:0006310;DNA recombination;0.0429066127552223!GO:0030660;Golgi-associated vesicle membrane;0.0432143249641984!GO:0006284;base-excision repair;0.0433433109569243!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0435238823357564!GO:0043414;biopolymer methylation;0.0435238823357564!GO:0016741;transferase activity, transferring one-carbon groups;0.0437267514953913!GO:0050811;GABA receptor binding;0.0455322152767152!GO:0006367;transcription initiation from RNA polymerase II promoter;0.045663846101847!GO:0050178;phenylpyruvate tautomerase activity;0.0457137863652319!GO:0008154;actin polymerization and/or depolymerization;0.0459229516355626!GO:0045893;positive regulation of transcription, DNA-dependent;0.0465946541075728!GO:0050772;positive regulation of axonogenesis;0.0471517865814935!GO:0030518;steroid hormone receptor signaling pathway;0.0474823423595094!GO:0030516;regulation of axon extension;0.0486365750394152!GO:0030030;cell projection organization and biogenesis;0.0487631707268929!GO:0048858;cell projection morphogenesis;0.0487631707268929!GO:0032990;cell part morphogenesis;0.0487631707268929
|sample_id=11655
|sample_id=11655
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=brain
|sample_tissue=brain
|top_motifs=T:3.35109179184;SOX2:3.27436579026;NKX2-3_NKX2-5:2.802188673;FOXM1:2.78546424071;NKX6-1,2:2.75418491612;ZNF384:2.57110932365;FOXD3:2.4942848772;OCT4_SOX2{dimer}:2.44528117691;PAX4:2.44372244336;IKZF2:2.43429698648;TFDP1:2.40495369378;CDC5L:2.29773618541;MZF1:2.22568746676;POU1F1:2.21462409124;LHX3,4:2.2117967127;POU5F1:2.18171526065;EVI1:2.10515901163;POU6F1:2.10226954128;PRRX1,2:2.0913250774;SOX{8,9,10}:2.08166137862;JUN:1.96407771109;GFI1:1.91961389705;CDX1,2,4:1.85209139065;GATA4:1.82780200778;EGR1..3:1.73091402716;BREu{core}:1.69422216463;NKX3-1:1.67433189143;RBPJ:1.67045491205;MED-1{core}:1.64516022886;ADNP_IRX_SIX_ZHX:1.64261158702;SOX17:1.5435439479;MTE{core}:1.51180210205;FOXP1:1.50962675088;PAX8:1.46060852732;NR1H4:1.4341409505;ONECUT1,2:1.43228388256;STAT1,3:1.42387714922;YY1:1.41613553426;ARID5B:1.38615261072;ATF4:1.36654045814;REST:1.36108451118;RFX1:1.31810218025;AHR_ARNT_ARNT2:1.28834449247;ZIC1..3:1.2688095609;ZFP161:1.25327183597;PRDM1:1.24744621611;UFEwm:1.24386111182;NRF1:1.21347740935;ELK1,4_GABP{A,B1}:1.19279137355;FOXQ1:1.15908868736;POU2F1..3:1.1488968199;SMAD1..7,9:1.13927638603;FOXL1:1.10749027841;ZBTB6:1.05096103851;HOX{A4,D4}:1.01094670942;PAX5:0.97520896236;POU3F1..4:0.969312367071;RREB1:0.958345263002;TFAP2B:0.95783547139;HMGA1,2:0.955856540892;LEF1_TCF7_TCF7L1,2:0.929688056885;KLF4:0.901441792294;NANOG:0.896741475852;CREB1:0.844458963958;ZNF143:0.842928778466;GFI1B:0.839445547151;ALX1:0.824331686518;PATZ1:0.800308767769;GTF2I:0.740261360052;CUX2:0.731587863188;GCM1,2:0.720595007494;ATF2:0.716600558033;NFY{A,B,C}:0.693167054722;HIC1:0.671540570038;E2F1..5:0.65402252496;MAZ:0.634523844269;NHLH1,2:0.631154567215;RFX2..5_RFXANK_RFXAP:0.623370202869;DBP:0.605698672408;PITX1..3:0.586286027258;PBX1:0.58289749691;TBP:0.56731602777;PAX1,9:0.558845949294;MYFfamily:0.556162419091;ZBTB16:0.535504709462;NFE2L1:0.530439692593;ZNF423:0.466832482245;TOPORS:0.461394117033;FOXP3:0.444273319767;GZF1:0.415427399581;TEF:0.360186632335;LMO2:0.349809807202;BPTF:0.345347991756;VSX1,2:0.331148373107;PAX6:0.245292727875;HOXA9_MEIS1:0.241560597899;PPARG:0.230635947933;MTF1:0.217916788877;NKX2-2,8:0.210617285084;NR6A1:0.209009261262;STAT2,4,6:0.202113844366;SOX5:0.201152929698;PDX1:0.175089102548;MAFB:0.158768912802;GTF2A1,2:0.143366756553;TGIF1:0.120683903522;XCPE1{core}:0.0895085172339;SPZ1:0.0804139773881;FOXN1:0.0723269260251;ATF5_CREB3:0.0390346224976;HOX{A5,B5}:-0.0352758395573;AIRE:-0.0523515659108;MYB:-0.0565437897865;SRF:-0.0925799524641;TLX1..3_NFIC{dimer}:-0.126861766186;PAX3,7:-0.189897291311;STAT5{A,B}:-0.235422609519;MEF2{A,B,C,D}:-0.242250898669;HNF4A_NR2F1,2:-0.261588516585;ESRRA:-0.265305986942;HNF1A:-0.272357195336;HAND1,2:-0.280308411885;FOS_FOS{B,L1}_JUN{B,D}:-0.308243252555;HBP1_HMGB_SSRP1_UBTF:-0.355126975005;ATF6:-0.362211810268;MYBL2:-0.39025168456;NFE2L2:-0.390531195748;MYOD1:-0.402698443635;HMX1:-0.414875341477;NKX2-1,4:-0.422361782328;NR3C1:-0.432174205163;ALX4:-0.448786909682;BACH2:-0.450841361868;NKX3-2:-0.452933766906;HSF1,2:-0.461815656189;CEBPA,B_DDIT3:-0.521692453626;NANOG{mouse}:-0.537897881608;RUNX1..3:-0.5720227065;AR:-0.60508396106;SNAI1..3:-0.606870082841;NFKB1_REL_RELA:-0.610718768838;DMAP1_NCOR{1,2}_SMARC:-0.610866503561;XBP1:-0.640425610702;SPIB:-0.647453373515;TLX2:-0.670239310179;SPI1:-0.674892765977;PAX2:-0.692181894972;TEAD1:-0.694619750402;NFE2:-0.69753982963;TP53:-0.742597808485;GATA6:-0.748527426699;NFATC1..3:-0.777040379898;FOSL2:-0.810876727938;CRX:-0.812998272033;SP1:-0.836293463151;ZEB1:-0.836436743968;FOX{D1,D2}:-0.890508612288;EP300:-0.903590063791;SREBF1,2:-0.924235602222;HOX{A6,A7,B6,B7}:-0.926816650626;IRF1,2:-0.930704128742;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.938232330777;IRF7:-0.940832977461;TFAP4:-0.987968656742;HLF:-0.992382370058;IKZF1:-0.997954281794;NFIL3:-1.00593808362;FOX{I1,J2}:-1.0405380163;NFIX:-1.04662500657;TFCP2:-1.06109755473;EN1,2:-1.07214908999;RORA:-1.07837077544;HES1:-1.12446840025;RXR{A,B,G}:-1.14200877103;TAL1_TCF{3,4,12}:-1.14279182484;FOX{F1,F2,J1}:-1.193526069;TFAP2{A,C}:-1.2490303676;EBF1:-1.25520382051;FOXO1,3,4:-1.26605471992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.27340295974;FOXA2:-1.29350730253;GLI1..3:-1.31194778287;ELF1,2,4:-1.32059009034;ESR1:-1.32535900471;bHLH_family:-1.3750526065;NR5A1,2:-1.44457165711;RXRA_VDR{dimer}:-1.4636396062;ETS1,2:-1.53244259282;TBX4,5:-1.54416310926;ZNF148:-1.65359088972;ZNF238:-1.87682045876;HIF1A:-1.90095461953
|top_motifs=T:3.35109179184;SOX2:3.27436579026;NKX2-3_NKX2-5:2.802188673;FOXM1:2.78546424071;NKX6-1,2:2.75418491612;ZNF384:2.57110932365;FOXD3:2.4942848772;OCT4_SOX2{dimer}:2.44528117691;PAX4:2.44372244336;IKZF2:2.43429698648;TFDP1:2.40495369378;CDC5L:2.29773618541;MZF1:2.22568746676;POU1F1:2.21462409124;LHX3,4:2.2117967127;POU5F1:2.18171526065;EVI1:2.10515901163;POU6F1:2.10226954128;PRRX1,2:2.0913250774;SOX{8,9,10}:2.08166137862;JUN:1.96407771109;GFI1:1.91961389705;CDX1,2,4:1.85209139065;GATA4:1.82780200778;EGR1..3:1.73091402716;BREu{core}:1.69422216463;NKX3-1:1.67433189143;RBPJ:1.67045491205;MED-1{core}:1.64516022886;ADNP_IRX_SIX_ZHX:1.64261158702;SOX17:1.5435439479;MTE{core}:1.51180210205;FOXP1:1.50962675088;PAX8:1.46060852732;NR1H4:1.4341409505;ONECUT1,2:1.43228388256;STAT1,3:1.42387714922;YY1:1.41613553426;ARID5B:1.38615261072;ATF4:1.36654045814;REST:1.36108451118;RFX1:1.31810218025;AHR_ARNT_ARNT2:1.28834449247;ZIC1..3:1.2688095609;ZFP161:1.25327183597;PRDM1:1.24744621611;UFEwm:1.24386111182;NRF1:1.21347740935;ELK1,4_GABP{A,B1}:1.19279137355;FOXQ1:1.15908868736;POU2F1..3:1.1488968199;SMAD1..7,9:1.13927638603;FOXL1:1.10749027841;ZBTB6:1.05096103851;HOX{A4,D4}:1.01094670942;PAX5:0.97520896236;POU3F1..4:0.969312367071;RREB1:0.958345263002;TFAP2B:0.95783547139;HMGA1,2:0.955856540892;LEF1_TCF7_TCF7L1,2:0.929688056885;KLF4:0.901441792294;NANOG:0.896741475852;CREB1:0.844458963958;ZNF143:0.842928778466;GFI1B:0.839445547151;ALX1:0.824331686518;PATZ1:0.800308767769;GTF2I:0.740261360052;CUX2:0.731587863188;GCM1,2:0.720595007494;ATF2:0.716600558033;NFY{A,B,C}:0.693167054722;HIC1:0.671540570038;E2F1..5:0.65402252496;MAZ:0.634523844269;NHLH1,2:0.631154567215;RFX2..5_RFXANK_RFXAP:0.623370202869;DBP:0.605698672408;PITX1..3:0.586286027258;PBX1:0.58289749691;TBP:0.56731602777;PAX1,9:0.558845949294;MYFfamily:0.556162419091;ZBTB16:0.535504709462;NFE2L1:0.530439692593;ZNF423:0.466832482245;TOPORS:0.461394117033;FOXP3:0.444273319767;GZF1:0.415427399581;TEF:0.360186632335;LMO2:0.349809807202;BPTF:0.345347991756;VSX1,2:0.331148373107;PAX6:0.245292727875;HOXA9_MEIS1:0.241560597899;PPARG:0.230635947933;MTF1:0.217916788877;NKX2-2,8:0.210617285084;NR6A1:0.209009261262;STAT2,4,6:0.202113844366;SOX5:0.201152929698;PDX1:0.175089102548;MAFB:0.158768912802;GTF2A1,2:0.143366756553;TGIF1:0.120683903522;XCPE1{core}:0.0895085172339;SPZ1:0.0804139773881;FOXN1:0.0723269260251;ATF5_CREB3:0.0390346224976;HOX{A5,B5}:-0.0352758395573;AIRE:-0.0523515659108;MYB:-0.0565437897865;SRF:-0.0925799524641;TLX1..3_NFIC{dimer}:-0.126861766186;PAX3,7:-0.189897291311;STAT5{A,B}:-0.235422609519;MEF2{A,B,C,D}:-0.242250898669;HNF4A_NR2F1,2:-0.261588516585;ESRRA:-0.265305986942;HNF1A:-0.272357195336;HAND1,2:-0.280308411885;FOS_FOS{B,L1}_JUN{B,D}:-0.308243252555;HBP1_HMGB_SSRP1_UBTF:-0.355126975005;ATF6:-0.362211810268;MYBL2:-0.39025168456;NFE2L2:-0.390531195748;MYOD1:-0.402698443635;HMX1:-0.414875341477;NKX2-1,4:-0.422361782328;NR3C1:-0.432174205163;ALX4:-0.448786909682;BACH2:-0.450841361868;NKX3-2:-0.452933766906;HSF1,2:-0.461815656189;CEBPA,B_DDIT3:-0.521692453626;NANOG{mouse}:-0.537897881608;RUNX1..3:-0.5720227065;AR:-0.60508396106;SNAI1..3:-0.606870082841;NFKB1_REL_RELA:-0.610718768838;DMAP1_NCOR{1,2}_SMARC:-0.610866503561;XBP1:-0.640425610702;SPIB:-0.647453373515;TLX2:-0.670239310179;SPI1:-0.674892765977;PAX2:-0.692181894972;TEAD1:-0.694619750402;NFE2:-0.69753982963;TP53:-0.742597808485;GATA6:-0.748527426699;NFATC1..3:-0.777040379898;FOSL2:-0.810876727938;CRX:-0.812998272033;SP1:-0.836293463151;ZEB1:-0.836436743968;FOX{D1,D2}:-0.890508612288;EP300:-0.903590063791;SREBF1,2:-0.924235602222;HOX{A6,A7,B6,B7}:-0.926816650626;IRF1,2:-0.930704128742;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.938232330777;IRF7:-0.940832977461;TFAP4:-0.987968656742;HLF:-0.992382370058;IKZF1:-0.997954281794;NFIL3:-1.00593808362;FOX{I1,J2}:-1.0405380163;NFIX:-1.04662500657;TFCP2:-1.06109755473;EN1,2:-1.07214908999;RORA:-1.07837077544;HES1:-1.12446840025;RXR{A,B,G}:-1.14200877103;TAL1_TCF{3,4,12}:-1.14279182484;FOX{F1,F2,J1}:-1.193526069;TFAP2{A,C}:-1.2490303676;EBF1:-1.25520382051;FOXO1,3,4:-1.26605471992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.27340295974;FOXA2:-1.29350730253;GLI1..3:-1.31194778287;ELF1,2,4:-1.32059009034;ESR1:-1.32535900471;bHLH_family:-1.3750526065;NR5A1,2:-1.44457165711;RXRA_VDR{dimer}:-1.4636396062;ETS1,2:-1.53244259282;TBX4,5:-1.54416310926;ZNF148:-1.65359088972;ZNF238:-1.87682045876;HIF1A:-1.90095461953
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11655-122E8;search_select_hide=table117:FF:11655-122E8
}}
}}

Latest revision as of 18:13, 4 June 2020

Name:Neurons, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13815
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexNA
ageNA
cell typeneuron
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005711
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13815 CAGE DRX008377 DRR009249
Accession ID Hg19

Library idBAMCTSS
CNhs13815 DRZ000674 DRZ002059
Accession ID Hg38

Library idBAMCTSS
CNhs13815 DRZ012024 DRZ013409
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.357
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0445
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.158
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0445
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.127
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain1.074
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.118
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.744
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.684
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0362
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.403
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.214
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.214
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.181
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.653
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.357
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.214
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13815

Jaspar motifP-value
MA0002.21.28472e-6
MA0003.10.103
MA0004.10.303
MA0006.10.389
MA0007.10.228
MA0009.10.4
MA0014.10.533
MA0017.10.00171
MA0018.20.00154
MA0019.10.321
MA0024.10.00216
MA0025.10.0235
MA0027.10.15
MA0028.10.538
MA0029.10.141
MA0030.10.0248
MA0031.10.00766
MA0035.20.0349
MA0038.10.0248
MA0039.20.0425
MA0040.10.0685
MA0041.10.345
MA0042.10.384
MA0043.10.173
MA0046.10.00614
MA0047.28.26015e-4
MA0048.10.724
MA0050.12.05324e-7
MA0051.19.49751e-4
MA0052.10.569
MA0055.10.485
MA0057.10.16
MA0058.10.192
MA0059.10.273
MA0060.15.03476e-4
MA0061.10.0158
MA0062.20.599
MA0065.23.55671e-4
MA0066.10.1
MA0067.10.471
MA0068.10.126
MA0069.10.56
MA0070.10.16
MA0071.10.117
MA0072.10.255
MA0073.10.209
MA0074.10.361
MA0076.10.257
MA0077.10.0475
MA0078.10.166
MA0079.20.431
MA0080.22.22698e-10
MA0081.10.0241
MA0083.10.78
MA0084.10.536
MA0087.10.195
MA0088.10.25
MA0090.10.0972
MA0091.10.707
MA0092.10.7
MA0093.10.323
MA0099.25.44825e-13
MA0100.10.659
MA0101.10.00724
MA0102.20.00304
MA0103.10.0941
MA0104.20.881
MA0105.10.0269
MA0106.10.0681
MA0107.10.00515
MA0108.20.103
MA0111.10.919
MA0112.21.07859e-4
MA0113.10.0698
MA0114.10.0122
MA0115.10.451
MA0116.10.0159
MA0117.10.665
MA0119.10.264
MA0122.10.32
MA0124.10.415
MA0125.10.147
MA0131.10.469
MA0135.10.135
MA0136.12.98405e-9
MA0137.20.322
MA0138.20.332
MA0139.10.399
MA0140.10.00106
MA0141.10.0208
MA0142.10.175
MA0143.10.171
MA0144.10.0482
MA0145.10.0701
MA0146.10.0155
MA0147.10.753
MA0148.10.0063
MA0149.10.0156
MA0150.18.14804e-5
MA0152.10.224
MA0153.10.13
MA0154.10.0239
MA0155.10.36
MA0156.11.24363e-7
MA0157.10.0224
MA0159.10.00269
MA0160.10.0109
MA0162.10.173
MA0163.10.00127
MA0164.10.754
MA0258.10.00542
MA0259.10.897



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13815

Novel motifP-value
10.208
100.279
1000.938
1010.907
1020.861
1030.0549
1040.162
1050.0566
1060.0209
1070.158
1080.933
1090.00293
110.0812
1100.157
1110.913
1120.276
1130.79
1140.0625
1150.203
1160.944
1170.0655
1180.399
1190.326
120.505
1200.645
1210.203
1220.245
1230.201
1240.837
1250.22
1260.00842
1270.332
1280.114
1290.347
130.0193
1300.261
1310.466
1320.898
1330.532
1340.748
1350.537
1360.0364
1370.265
1380.48
1390.0537
140.77
1400.868
1410.467
1420.786
1430.103
1440.793
1450.482
1460.191
1470.959
1480.22
1490.198
150.0707
1500.5
1510.332
1520.082
1530.938
1540.61
1550.824
1560.636
1570.346
1580.943
1590.424
160.143
1600.172
1610.16
1620.745
1630.39
1640.0843
1650.393
1660.334
1670.358
1680.0989
1690.014
170.106
180.198
190.23
20.267
200.94
210.41
220.0757
230.0226
240.0586
250.55
260.153
270.33
280.783
290.169
30.114
300.402
310.916
320.0594
330.238
340.279
350.557
360.302
370.0783
380.165
390.305
40.869
400.0573
410.221
420.298
430.126
440.724
450.375
460.287
470.196
480.174
490.232
50.153
500.228
510.396
520.276
530.693
540.26
550.26
560.38
570.604
580.18
590.0217
60.97
600.0566
610.0554
620.158
630.106
640.507
650.155
660.632
670.641
680.284
690.555
70.161
700.0844
710.0398
720.279
730.0562
740.968
750.0834
760.727
770.0591
780.0345
790.741
80.412
800.0952
810.758
820.303
830.116
840.946
850.104
860.3
870.0561
880.686
890.253
90.21
900.904
910.732
920.128
930.59
940.45
950.0357
960.698
970.513
980.487
990.365



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13815


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

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