FF:11545-120B6: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	CD34+ Progenitors, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13227
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	hematopoietic stem cell, CD34+
cell line	NA
company	3HBiomedical
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	3H100-60-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005368

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13227		CAGE		DRX008058		DRR008930

Accession ID Hg19

Library id		BAM		CTSS
CNhs13227		DRZ000355		DRZ001740

Accession ID Hg38

Library id		BAM		CTSS
CNhs13227		DRZ011705		DRZ013090

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.243
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.366
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.329
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.519
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.366
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.125
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.366
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.282
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.637
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.492
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.286
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.562
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.338
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.681
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.3
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.449
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.381
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.505
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.366
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13227

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.10396e-7
MA0003.1	MA0003.1	0.331
MA0004.1	MA0004.1	0.664
MA0006.1	MA0006.1	0.333
MA0007.1	MA0007.1	0.39
MA0009.1	MA0009.1	0.897
MA0014.1	MA0014.1	0.965
MA0017.1	MA0017.1	0.967
MA0018.2	MA0018.2	1.7311e-11
MA0019.1	MA0019.1	0.89
MA0024.1	MA0024.1	0.924
MA0025.1	MA0025.1	4.31339e-5
MA0027.1	MA0027.1	0.648
MA0028.1	MA0028.1	0.0327
MA0029.1	MA0029.1	0.161
MA0030.1	MA0030.1	2.66324e-4
MA0031.1	MA0031.1	3.48666e-4
MA0035.2	MA0035.2	7.51241e-5
MA0038.1	MA0038.1	0.369
MA0039.2	MA0039.2	0.312
MA0040.1	MA0040.1	0.0118
MA0041.1	MA0041.1	0.065
MA0042.1	MA0042.1	0.0444
MA0043.1	MA0043.1	7.65114e-12
MA0046.1	MA0046.1	0.638
MA0047.2	MA0047.2	0.0483
MA0048.1	MA0048.1	0.572
MA0050.1	MA0050.1	2.28765e-5
MA0051.1	MA0051.1	5.44299e-4
MA0052.1	MA0052.1	4.44722e-5
MA0055.1	MA0055.1	0.629
MA0057.1	MA0057.1	0.268
MA0058.1	MA0058.1	0.69
MA0059.1	MA0059.1	0.985
MA0060.1	MA0060.1	0.807
MA0061.1	MA0061.1	2.45653e-19
MA0062.2	MA0062.2	1.47048e-9
MA0065.2	MA0065.2	0.232
MA0066.1	MA0066.1	0.591
MA0067.1	MA0067.1	2.94381e-7
MA0068.1	MA0068.1	4.80945e-4
MA0069.1	MA0069.1	0.0878
MA0070.1	MA0070.1	0.938
MA0071.1	MA0071.1	0.737
MA0072.1	MA0072.1	0.639
MA0073.1	MA0073.1	0.242
MA0074.1	MA0074.1	0.968
MA0076.1	MA0076.1	0.00383
MA0077.1	MA0077.1	0.608
MA0078.1	MA0078.1	0.31
MA0079.2	MA0079.2	0.398
MA0080.2	MA0080.2	2.79502e-14
MA0081.1	MA0081.1	2.95621e-4
MA0083.1	MA0083.1	0.589
MA0084.1	MA0084.1	0.297
MA0087.1	MA0087.1	0.805
MA0088.1	MA0088.1	0.836
MA0090.1	MA0090.1	4.35626e-4
MA0091.1	MA0091.1	0.483
MA0092.1	MA0092.1	0.703
MA0093.1	MA0093.1	0.718
MA0099.2	MA0099.2	6.9392e-8
MA0100.1	MA0100.1	0.00113
MA0101.1	MA0101.1	5.87277e-24
MA0102.2	MA0102.2	6.18505e-5
MA0103.1	MA0103.1	0.45
MA0104.2	MA0104.2	0.0378
MA0105.1	MA0105.1	1.67038e-10
MA0106.1	MA0106.1	0.0877
MA0107.1	MA0107.1	4.52226e-24
MA0108.2	MA0108.2	0.68
MA0111.1	MA0111.1	0.402
MA0112.2	MA0112.2	0.76
MA0113.1	MA0113.1	0.269
MA0114.1	MA0114.1	0.942
MA0115.1	MA0115.1	0.286
MA0116.1	MA0116.1	0.0269
MA0117.1	MA0117.1	0.014
MA0119.1	MA0119.1	0.596
MA0122.1	MA0122.1	0.311
MA0124.1	MA0124.1	0.708
MA0125.1	MA0125.1	0.447
MA0131.1	MA0131.1	0.283
MA0135.1	MA0135.1	0.592
MA0136.1	MA0136.1	2.06507e-19
MA0137.2	MA0137.2	0.0321
MA0138.2	MA0138.2	0.155
MA0139.1	MA0139.1	0.7
MA0140.1	MA0140.1	2.13483e-5
MA0141.1	MA0141.1	0.377
MA0142.1	MA0142.1	0.395
MA0143.1	MA0143.1	0.687
MA0144.1	MA0144.1	0.292
MA0145.1	MA0145.1	0.432
MA0146.1	MA0146.1	0.764
MA0147.1	MA0147.1	0.0754
MA0148.1	MA0148.1	0.149
MA0149.1	MA0149.1	0.943
MA0150.1	MA0150.1	6.82401e-6
MA0152.1	MA0152.1	0.165
MA0153.1	MA0153.1	0.377
MA0154.1	MA0154.1	0.00291
MA0155.1	MA0155.1	0.247
MA0156.1	MA0156.1	8.75163e-17
MA0157.1	MA0157.1	0.0623
MA0159.1	MA0159.1	0.746
MA0160.1	MA0160.1	0.0646
MA0162.1	MA0162.1	0.912
MA0163.1	MA0163.1	7.41339e-4
MA0164.1	MA0164.1	0.584
MA0258.1	MA0258.1	0.56
MA0259.1	MA0259.1	0.673

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13227

Novel motif	Logo	P-value
1	1	0.672
10	10	0.125
100	100	0.389
101	101	0.627
102	102	0.885
103	103	0.185
104	104	0.424
105	105	0.446
106	106	0.00505
107	107	0.273
108	108	0.216
109	109	0.321
11	11	0.599
110	110	0.564
111	111	0.14
112	112	0.892
113	113	0.366
114	114	0.606
115	115	0.262
116	116	0.297
117	117	0.0039
118	118	0.114
119	119	0.372
12	12	0.285
120	120	0.592
121	121	0.529
122	122	0.345
123	123	0.546
124	124	0.903
125	125	0.939
126	126	0.298
127	127	0.798
128	128	0.451
129	129	0.867
13	13	0.153
130	130	0.691
131	131	0.579
132	132	0.0192
133	133	0.0297
134	134	0.598
135	135	0.873
136	136	0.359
137	137	0.00204
138	138	0.771
139	139	0.413
14	14	0.85
140	140	0.47
141	141	0.821
142	142	0.862
143	143	0.13
144	144	0.721
145	145	0.281
146	146	0.86
147	147	0.0656
148	148	0.815
149	149	0.866
15	15	0.402
150	150	0.654
151	151	0.562
152	152	0.258
153	153	0.866
154	154	0.811
155	155	0.0354
156	156	0.307
157	157	0.309
158	158	0.0586
159	159	0.129
16	16	0.596
160	160	0.476
161	161	0.364
162	162	0.0798
163	163	0.866
164	164	0.587
165	165	0.35
166	166	0.526
167	167	0.221
168	168	0.755
169	169	0.339
17	17	0.822
18	18	0.723
19	19	0.187
2	2	0.326
20	20	0.35
21	21	0.247
22	22	0.953
23	23	0.952
24	24	0.935
25	25	0.35
26	26	0.968
27	27	0.748
28	28	0.371
29	29	0.134
3	3	0.647
30	30	0.422
31	31	0.662
32	32	0.0138
33	33	0.291
34	34	0.776
35	35	0.258
36	36	0.156
37	37	0.00893
38	38	0.784
39	39	0.739
4	4	0.592
40	40	0.69
41	41	0.0984
42	42	0.436
43	43	0.702
44	44	0.372
45	45	0.938
46	46	0.764
47	47	0.747
48	48	0.918
49	49	0.541
5	5	0.544
50	50	0.985
51	51	0.518
52	52	0.682
53	53	0.672
54	54	0.662
55	55	0.463
56	56	0.978
57	57	0.528
58	58	0.288
59	59	0.563
6	6	0.272
60	60	0.343
61	61	0.0767
62	62	0.214
63	63	0.634
64	64	0.87
65	65	0.596
66	66	0.912
67	67	0.656
68	68	0.975
69	69	0.215
7	7	0.5
70	70	0.691
71	71	0.166
72	72	0.141
73	73	0.123
74	74	0.528
75	75	0.186
76	76	0.303
77	77	0.0784
78	78	0.965
79	79	0.0633
8	8	0.341
80	80	0.0206
81	81	0.814
82	82	0.107
83	83	0.0033
84	84	0.322
85	85	0.953
86	86	0.0284
87	87	0.0556
88	88	0.518
89	89	0.106
9	9	0.306
90	90	0.983
91	91	0.783
92	92	0.949
93	93	0.511
94	94	0.377
95	95	0.0022
96	96	0.63
97	97	0.967
98	98	0.487
99	99	5.00058e-5

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13227

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000026 human CD34-positive hematopoietic stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007951
+|DRA_sample_Accession=CAGE@SAMD00005368
-|accession_numbers=CAGE;DRX008058;DRR008930;DRZ000355;DRZ001740
+|accession_numbers=CAGE;DRX008058;DRR008930;DRZ000355;DRZ001740;DRZ011705;DRZ013090
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000034
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.18!152.00!GATA2;;chr21:39870339..39870443,-!p1@ERG!2.17!145.39!ERG;;chr9:20382446..20382493,-!p4@MLLT3!2.08!118.95!MLLT3;;chr6:135502501..135502546,+!p1@MYB!1.98!113.67!MYB;;chr2:157189180..157189290,-!p1@NR4A2!1.74!266.99!NR4A2;;chr7:50344289..50344323,+!p1@IKZF1!1.72!51.55!IKZF1;;chr1:25256756..25256774,-!p1@RUNX3!1.67!83.27!RUNX3;;chr7:27192185..27192209,-!p1@HOXA3!1.66!44.94!HOXA3;;chr14:75745523..75745537,+!p1@FOS!1.64!4842.76!FOS;;chr16:85932760..85932775,+!p1@IRF8!1.64!42.29!IRF8;;chr19:45971246..45971265,+!p1@FOSB!1.62!721.66!FOSB;;chr2:68592406..68592424,+!p1@PLEK!1.62!40.97!PLEK;;chr12:52445218..52445237,+!p1@NR4A1!1.59!454.67!NR4A1;;chr4:57522513..57522548,-!p4@HOPX!1.59!38.33!HOPX;;chr2:16080659..16080685,+!p1@MYCN!1.56!35.69!MYCN;;chr19:54058073..54058088,+!p1@ZNF331!1.56!35.69!ZNF331;;chr4:57522674..57522699,-!p5@HOPX!1.55!34.36!HOPX;;chr6:144385698..144385742,-!p2@PLAGL1!1.53!39.65!PLAGL1;;chr19:13213511..13213545,-!p2@LYL1!1.53!35.69!LYL1;;chr11:47400078..47400106,-!p1@SPI1!1.53!33.04!SPI1;;chr2:100759010..100759035,-!p1@AFF3!1.53!33.04!AFF3;;chr4:57522598..57522664,-!p3@HOPX!1.53!33.04!HOPX;;chrX:48644984..48645005,+!p1@GATA1!1.50!30.40!GATA1;;chr7:115670804..115670825,-!p1@TFEC!1.50!30.40!TFEC;;chr20:50159198..50159299,-!p1@NFATC2!1.49!43.62!NFATC2;;chr10:94449703..94449718,+!p1@HHEX!1.48!108.38!HHEX;;chr20:30193083..30193098,+!p1@ID1!1.47!2167.61!ID1;;chr21:36421535..36421610,-!p2@RUNX1!1.47!97.81!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.47!43.62!NR4A3;;chr10:98591801..98591841,+!p3@LCOR!1.46!38.33!LCOR;;chr7:27205136..27205164,-!p1@HOXA9!1.46!27.76!HOXA9;;chr6:44233252..44233296,-!p1@NFKBIE!1.43!243.20!NFKBIE;;chr9:3525727..3525828,-!p2@RFX3!1.43!64.76!RFX3;;chr5:131826457..131826514,-!p1@IRF1!1.42!945.02!IRF1;;chr18:77155922..77155939,+!p1@NFATC1!1.42!67.41!NFATC1;;chrX:84499081..84499115,+!p2@ZNF711!1.42!37.01!ZNF711;;chr22:38597987..38598021,+!p2@MAFF!1.40!141.42!MAFF;;chr3:39195075..39195088,-!p1@CSRNP1!1.38!140.10!CSRNP1;;chr9:102584262..102584276,+!p1@NR4A3!1.37!48.90!NR4A3;;chr17:38497662..38497713,+!p4@RARA!1.36!25.11!RARA;;chr18:53257001..53257015,-!p5@TCF4!1.31!33.04!TCF4;;chr19:36391434..36391450,-!p1@NFKBID!1.30!37.01!NFKBID;;chr3:18486354..18486377,-!p2@SATB1!1.30!23.79!SATB1;;chr3:71631151..71631194,-!p15@FOXP1!1.30!21.15!FOXP1;;chr12:54694758..54694805,-!p1@NFE2!1.29!22.47!NFE2;;chr14:35873947..35873965,-!p1@NFKBIA!1.28!1118.17!NFKBIA;;chr4:103422499..103422632,+!p1@NFKB1!1.28!370.08!NFKB1;;chr13:41593425..41593480,-!p1@ELF1!1.28!112.35!ELF1;;chr6:135502408..135502459,+!p2@MYB!1.28!21.15!MYB;;chr12:57914286..57914304,-!p1@DDIT3!1.27!617.24!DDIT3;;chr7:50344251..50344288,+!p3@IKZF1!1.26!17.18!IKZF1;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!63.44!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.23!15.86!KDM5D;;chr19:54041669..54041697,+!p2@ZNF331!1.23!15.86!ZNF331;;chr1:47697881..47697910,-!p4@TAL1!1.23!15.86!TAL1;;chr11:47399996..47400014,-!p4@SPI1!1.23!15.86!SPI1;;chr13:72440772..72440847,-!p5@DACH1!1.23!15.86!DACH1;;chr18:22932080..22932170,-!p1@ZNF521!1.22!64.76!ZNF521;;chrX:84498989..84499003,+!p1@ZNF711!1.22!21.15!ZNF711;;chr19:45252008..45252024,+!p2@BCL3!1.20!48.90!BCL3;;chr7:104654690..104654704,+!p2@MLL5!1.20!29.08!MLL5;;chr9:102584159..102584174,+!p2@NR4A3!1.20!26.43!NR4A3;;chr11:113930425..113930471,+!p1@ZBTB16!1.20!21.15!ZBTB16;;chr4:57522166..57522260,-!p2@HOPX!1.20!17.18!HOPX;;chr1:157108130..157108173,-!p1@ETV3!1.19!104.42!ETV3;;chr12:11802753..11802834,+!p2@ETV6!1.19!70.05!ETV6;;chr6:391743..391759,+!p1@IRF4!1.19!14.54!IRF4;;chr19:45971060..45971122,+!p3@FOSB!1.19!14.54!FOSB;;chr21:36421347..36421380,-!p8@RUNX1!1.19!14.54!RUNX1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.83!FOXP1;;chr2:145277640..145277771,-!p1@ZEB2!1.17!181.07!ZEB2;;chr10:94449675..94449694,+!p2@HHEX!1.16!35.69!HHEX;;chr19:12405606..12405629,-!p2@ZNF44!1.16!26.43!ZNF44;;chr19:13213662..13213686,-!p1@LYL1!1.16!19.83!LYL1;;chr3:22414241..22414278,-!p5@ZNF385D!1.15!13.22!ZNF385D;;chr6:28048343..28048354,+!p1@ZNF165!1.15!13.22!ZNF165;;chr7:27205106..27205134,-!p2@HOXA9!1.15!13.22!HOXA9;;chr10:104155480..104155534,+!p2@NFKB2!1.14!81.95!NFKB2;;chr6:45390300..45390335,+!p4@RUNX2!1.14!19.83!RUNX2;;chrX:101186981..101187030,-!p1@ZMAT1!1.13!40.97!ZMAT1;;chr19:58220517..58220583,-!p1@ZNF154!1.13!39.65!ZNF154;;chr19:12721790..12721810,+!p2@ZNF791!1.13!34.36!ZNF791;;chr9:117150254..117150271,-!p1@AKNA!1.13!34.36!AKNA;;chr13:72441315..72441454,-!p1@DACH1!1.13!25.11!DACH1;;chr2:8822176..8822196,+!p1@ID2!1.11!1641.57!ID2;;chr2:16081912..16081931,+!p2@MYCN!1.11!11.90!MYCN;;chr3:63953435..63953499,+!p1@ATXN7!1.11!11.90!ATXN7;;chr7:137620684..137620711,-!p4@CREB3L2!1.11!11.90!CREB3L2;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.90!ZFY;;chr11:47399947..47399961,-!p3@SPI1!1.11!11.90!SPI1;;chrX:129244454..129244488,-!p1@ELF4!1.09!81.95!ELF4;;chr17:40440481..40440550,+!p1@STAT5A!1.08!79.30!STAT5A;;chr19:6110474..6110551,-!p1@RFX2!1.08!67.41!RFX2;;chr2:66662249..66662267,+!p2@MEIS1!1.08!42.29!MEIS1;;chrX:106960221..106960236,-!p3@TSC22D3!1.08!30.40!TSC22D3;;chr8:103667935..103667960,-!p1@KLF10!1.07!482.43!KLF10;;chr1:156470515..156470542,-!p2@MEF2D!1.07!56.83!MEF2D;;chr7:104654718..104654741,+!p3@MLL5!1.07!15.86!MLL5;;chrX:131624056..131624069,-!p2@MBNL3!1.07!14.54!MBNL3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.06!553.80!NFKBIZ;;chr14:35872962..35873025,-!p3@NFKBIA!1.06!26.43!NFKBIA;;chr3:150126904..150126958,+!p7@TSC22D2!1.06!18.50!TSC22D2;;chr8:81397820..81397836,+!p2@ZBTB10!1.06!13.22!ZBTB10;;chr21:36421237..36421252,-!p33@RUNX1!1.06!10.57!RUNX1;;chr19:57901326..57901385,+!p2@ZNF548!1.05!25.11!ZNF548;;chr9:102584128..102584144,+!p3@NR4A3!1.05!19.83!NR4A3;;chr19:45504688..45504782,+!p1@RELB!1.03!59.48!RELB;;chr22:50247528..50247568,+!p2@ZBED4!1.03!23.79!ZBED4;;chr4:87857474..87857489,+!p7@AFF1!1.03!17.18!AFF1;;chr6:45390269..45390298,+!p5@RUNX2!1.02!15.86!RUNX2;;chr10:35416142..35416169,+!p3@CREM!1.01!25.11!CREM;;chr19:45250948..45250998,+!p3@BCL3!1.01!23.79!BCL3;;chr3:39195139..39195150,-!p3@CSRNP1!1.01!11.90!CSRNP1;;chr2:16080635..16080650,+!p4@MYCN!1.01!9.25!MYCN;;chr2:16082155..16082169,+!p3@MYCN!1.01!9.25!MYCN;;chr1:47697539..47697573,-!p3@TAL1!1.01!9.25!TAL1;;chr21:36421147..36421193,-!p10@RUNX1!1.01!9.25!RUNX1;;chr10:51585449..51585487,+!p6@NCOA4!1.01!9.25!NCOA4;;chr12:54694807..54694832,-!p3@NFE2!1.01!9.25!NFE2;;chr18:22932004..22932021,-!p2@ZNF521!1.01!9.25!ZNF521;;chr6:135502472..135502489,+!p3@MYB!1.01!9.25!MYB;;chr9:102584278..102584285,+!p5@NR4A3!1.01!9.25!NR4A3;;chrX:84499056..84499078,+!p3@ZNF711!1.01!9.25!ZNF711;;chr19:18392422..18392440,-!p1@JUND!1.00!1267.52!JUND;;chr3:128206762..128206781,-!p2@GATA2!1.00!56.83!GATA2;;chr2:70142232..70142251,+!p1@MXD1!1.00!51.55!MXD1;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!1.00!27.76!ZNF321P;;chr8:81397876..81397898,+!p5@ZBTB10!1.00!10.57!ZBTB10;;chr3:44626446..44626477,+!p1@ZNF660!0.99!15.86!ZNF660;;chr19:56988677..56988729,-!p1@ZNF667!0.99!15.86!ZNF667;;chr6:91006575..91006602,-!p2@BACH2!0.99!13.22!BACH2;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!235.26!TSC22D3;;chr6:143266297..143266356,-!p1@HIVEP2!0.98!42.29!HIVEP2;;chr12:11802547..11802560,+!p5@ETV6!0.98!11.90!ETV6;;chr9:32550839..32550962,-!p3@TOPORS!0.97!21.15!TOPORS;;chr8:60031619..60031676,-!p1@TOX!0.97!18.50!TOX;;chr3:101546827..101546847,+!p2@NFKBIZ!0.97!11.90!NFKBIZ;;chr10:104154246..104154347,+!p3@NFKB2!0.96!51.55!NFKB2;;chr14:65569101..65569119,-!p3@MAX!0.96!26.43!MAX;;chr8:123793988..123794016,+!p1@ZHX2!0.96!14.54!ZHX2;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.90!NR3C1;;chr1:149858461..149858479,+!p1@BOLA1!0.95!3206.48!BOLA1;;chr19:12902289..12902307,+!p1@JUNB!0.95!1886.08!JUNB;;chr3:5021113..5021180,+!p1@BHLHE40!0.95!567.01!BHLHE40;;chr2:97202480..97202499,+!p1@ARID5A!0.95!83.27!ARID5A;;chr1:33005020..33005077,+!p1@ZBTB8A!0.95!44.94!ZBTB8A;;chr21:47063625..47063658,+!p1@PCBP3!0.95!35.69!PCBP3;;chr19:47616992..47617011,-!p4@ZC3H4!0.95!17.18!ZC3H4;;chr1:2985760..2985774,+!p1@PRDM16!0.95!7.93!PRDM16;;chr2:60778062..60778075,-!p6@BCL11A!0.95!7.93!BCL11A;;chr3:71631217..71631234,-!p33@FOXP1!0.95!7.93!FOXP1;;chrX:129244430..129244442,-!p5@ELF4!0.95!7.93!ELF4;;chr7:137620650..137620677,-!p3@CREB3L2!0.95!7.93!CREB3L2;;chr7:99680193..99680204,-!p2@ZNF3!0.95!7.93!ZNF3;;chr8:103668114..103668134,-!p5@KLF10!0.95!7.93!KLF10;;chr11:47400062..47400077,-!p2@SPI1!0.95!7.93!SPI1;;chr19:22034809..22034878,-!p2@ZNF43!0.94!27.76!ZNF43;;chr3:5020939..5020952,+!p2@BHLHE40!0.94!25.11!BHLHE40;;chr1:114302086..114302174,-!p1@PHTF1!0.93!142.75!PHTF1;;chr4:87928142..87928165,+!p5@AFF1!0.93!26.43!AFF1;;chr15:56535468..56535521,-!p2@RFX7!0.93!14.54!RFX7;;chr6:45390599..45390662,+!p11@RUNX2!0.93!9.25!RUNX2;;chr7:128577972..128578047,+!p1@IRF5!0.92!11.90!IRF5;;chrX:106960249..106960260,-!p5@TSC22D3!0.92!11.90!TSC22D3;;chr8:81397846..81397860,+!p3@ZBTB10!0.92!9.25!ZBTB10;;chr2:61108808..61108821,+!p3@REL!0.92!9.25!REL;;chr2:61108695..61108753,+!p1@REL!0.91!51.55!REL;;chr19:24269981..24270007,+!p2@ZNF254!0.90!46.26!ZNF254;;chr10:94449649..94449664,+!p3@HHEX!0.90!10.57!HHEX;;chr6:45296048..45296082,+!p1@RUNX2!0.90!7.93!RUNX2;;chr1:40627038..40627071,+!p1@RLF!0.89!92.52!RLF;;chr4:106068026..106068084,+!p1@TET2!0.89!64.76!TET2;;chr19:37064145..37064216,-!p1@ZNF529!0.89!59.48!ZNF529;;chr7:127032296..127032317,-!p4@ZNF800!0.89!7.93!ZNF800;;chr2:174828545..174828644,-!p1@SP3!0.88!107.06!SP3;;chr2:208031542..208031595,-!p2@KLF7!0.88!48.90!KLF7;;chr17:38498402..38498445,+!p3@RARA!0.88!25.11!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.88!21.15!ZBTB25;;chr22:29196492..29196503,-!p3@XBP1!0.88!10.57!XBP1;;chr2:100758991..100759009,-!p3@AFF3!0.88!6.61!AFF3;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.61!IKZF2;;chr2:60780580..60780590,-!p9@BCL11A!0.88!6.61!BCL11A;;chr2:68592394..68592405,+!p2@PLEK!0.88!6.61!PLEK;;chr10:101292684..101292706,+!p1@NKX2-3!0.88!6.61!NKX2-3;;chr18:77155942..77155951,+!p3@NFATC1!0.88!6.61!NFATC1;;chr19:12595565..1259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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000037;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000837
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor1.CNhs13227.11545-120B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor1.CNhs13227.11545-120B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor1.CNhs13227.11545-120B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor1.CNhs13227.11545-120B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD34%252b%2520Progenitors%252c%2520donor1.CNhs13227.11545-120B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11545-120B6
 |is_a=EFO:0002091;;FF:0000026
 |is_obsolete=
 |library_id=CNhs13227
+|library_id_phase_based=2:CNhs13227
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11545
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11545
 |name=CD34+ Progenitors, donor1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13227,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11545-120B6;search_select_hide=table117:FF:11545-120B6
 }}

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FF:11545-120B6: Difference between revisions

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Latest revision as of 18:08, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0