FF:11537-120A7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005975 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005975 | ||
| | |accession_numbers=CAGE;DRX008346;DRR009218;DRZ000643;DRZ002028;DRZ011993;DRZ013378 | ||
| | |accession_numbers_RNASeq=sRNA-Seq;DRX037251;DRR041617;DRZ007259 | ||
| | |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000096 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.35!225.32!HIF3A;;chr2:119605214..119605230,-!p1@EN1!2.26!182.40!EN1;;chr11:46299199..46299233,+!p1@CREB3L1!2.04!525.75!CREB3L1;;chr11:47279504..47279563,+!p1@NR1H3!1.98!207.44!NR1H3;;chr3:126076242..126076257,-!p1@KLF15!1.92!100.14!KLF15;;chr2:239756671..239756732,+!p1@TWIST2!1.89!236.05!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.89!203.86!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.53!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.83!75.11!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.82!171.68!OSR1;;chr17:1959369..1959388,+!p2@HIC1!1.74!135.91!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!1.74!89.41!TWIST2;;chr20:62680984..62680999,-!p1@SOX18!1.68!60.80!SOX18;;chr8:99956662..99956684,+!p1@OSR2!1.66!67.95!OSR2;;chr8:48650715..48650735,-!p1@CEBPD!1.65!5221.78!CEBPD;;chr11:65687362..65687436,+!p3@DRAP1!1.65!189.56!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.62!67.95!CREB3L1;;chr11:47279248..47279264,+!p3@NR1H3!1.62!46.50!NR1H3;;chr2:85980951..85981004,+!p1@ATOH8!1.59!60.80!ATOH8;;chr19:58987786..58987805,+!p3@ZNF446!1.59!53.65!ZNF446;;chr12:54402745..54402788,+!p1@HOXC8!1.57!35.77!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.57!35.77!HOXD8;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.54!35.77!GLIS1;;chr12:53614115..53614154,-!p1@RARG!1.53!168.10!RARG;;chr17:1958388..1958404,+!p1@HIC1!1.52!196.71!HIC1;;chr7:19157043..19157088,-!p2@TWIST1!1.52!78.68!TWIST1;;chr7:150946015..150946070,-!p3@SMARCD3!1.52!67.95!SMARCD3;;chr19:47523058..47523114,+!p1@NPAS1!1.52!32.19!NPAS1;;chr7:150974206..150974255,-!p1@SMARCD3!1.50!182.40!SMARCD3;;chr11:113930425..113930471,+!p1@ZBTB16!1.49!42.92!ZBTB16;;chr17:17726907..17726958,-!p2@SREBF1!1.47!168.10!SREBF1;;chr17:61919985..61920012,-!p3@SMARCD2!1.47!67.95!SMARCD2;;chr11:113930401..113930422,+!p3@ZBTB16!1.47!28.61!ZBTB16;;chr12:54410948..54410992,+!p3@HOXC5!1.47!28.61!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.46!35.77!PRRX2;;chr3:126076264..126076305,-!p2@KLF15!1.43!35.77!KLF15;;chr19:50432453..50432468,+!p1@ATF5!1.42!1344.79!ATF5;;chr19:7580944..7581031,+!p1@ZNF358!1.42!733.20!ZNF358;;chr8:49833948..49833973,-!p2@SNAI2!1.42!153.79!SNAI2;;chr17:46682321..46682362,-!p1@HOXB6!1.42!25.04!HOXB6;;chr2:119604456..119604501,-!p2@EN1!1.42!25.04!EN1;;chr12:54393880..54393962,+!p1@HOXC9!1.42!25.04!HOXC9;;chr19:7584815..7584829,+!p2@ZNF358!1.40!32.19!ZNF358;;chr17:59477275..59477286,+!p3@TBX2!1.40!32.19!TBX2;;chr17:59477233..59477263,+!p1@TBX2!1.39!71.53!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.37!96.57!NR2F1;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.61!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2317.61!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!1.35!92.99!TOX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.46!PRRX2;;chr19:13134457..13134462,+!p5@NFIX!1.33!35.77!NFIX;;chr8:49833978..49833996,-!p1@SNAI2!1.32!393.42!SNAI2;;chr19:47922750..47922795,-!p1@MEIS3!1.32!32.19!MEIS3;;chr19:56154958..56155027,+!p1@ZNF581!1.31!615.17!ZNF581;;chr19:44037546..44037594,+!p1@ZNF575!1.31!39.34!ZNF575;;chr8:37553292..37553317,+!p1@ZNF703!1.30!432.76!ZNF703;;chr19:36134528..36134563,+!p1@ETV2!1.30!53.65!ETV2;;chr19:46272106..46272115,-!p3@SIX5!1.30!50.07!SIX5;;chr9:77112244..77112262,+!p1@RORB!1.30!21.46!RORB;;chr17:3571887..3571918,-!p2@TAX1BP3!1.28!196.71!TAX1BP3;;chr14:95236440..95236465,-!p1@GSC!1.28!17.88!GSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.28!17.88!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.28!17.88!HOXC6;;chr2:85981008..85981025,+!p7@ATOH8!1.28!17.88!ATOH8;;chr14:75894714..75894733,+!p1@JDP2!1.27!486.41!JDP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!457.80!TSC22D3;;chr2:85981222..85981259,+!p2@ATOH8!1.27!28.61!ATOH8;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!1.26!958.52!PCBP4;;chr17:61920023..61920110,-!p1@SMARCD2!1.26!236.05!SMARCD2;;chr4:2263809..2263854,-!p1@MXD4!1.25!622.32!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!1.23!35.77!HOXB2;;chr7:100076723..100076737,-!p3@TSC22D4!1.23!25.04!TSC22D4;;chr7:44143925..44143970,+!p1@AEBP1!1.22!343.35!AEBP1;;chr1:23885981..23886002,-!p1@ID3!1.21!2621.62!ID3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.77!NFATC4;;chr12:54772960..54773015,-!p3@ZNF385A!1.20!71.53!ZNF385A;;chr2:174830540..174830563,-!p8@SP3!1.20!21.46!SP3;;chr20:48807351..48807384,+!p1@CEBPB!1.19!1462.81!CEBPB;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.38!ZNF467;;chr17:46621937..46621966,-!p2@HOXB2!1.19!39.34!HOXB2;;chr1:221053049..221053075,+!p3@HLX!1.19!25.04!HLX;;chr6:34204642..34204664,+!p2@HMGA1!1.18!1859.81!HMGA1;;chr17:40440481..40440550,+!p1@STAT5A!1.18!100.14!STAT5A;;chr16:3185125..3185173,+!p1@ZNF213!1.18!35.77!ZNF213;;chr16:8962202..8962222,-!p3@CARHSP1!1.18!25.04!CARHSP1;;chr7:27192185..27192209,-!p1@HOXA3!1.18!14.31!HOXA3;;chr8:72756194..72756208,-!p9@MSC!1.18!14.31!MSC;;chr12:54378923..54378966,+!p1@HOXC10!1.18!14.31!HOXC10;;chr20:30433396..30433414,-!p1@FOXS1!1.18!14.31!FOXS1;;chr2:177001366..177001379,+!p4@HOXD3!1.18!14.31!HOXD3;;chr2:85981107..85981120,+!p3@ATOH8!1.18!14.31!ATOH8;;chr3:147111231..147111281,+!p3@ZIC1!1.18!14.31!ZIC1;;chr1:149858461..149858479,+!p1@BOLA1!1.17!5232.51!BOLA1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.17!135.91!GLIS2;;chr8:72756667..72756736,-!p2@MSC!1.17!21.46!MSC;;chr6:31515337..31515420,+!p1@NFKBIL1!1.16!239.63!NFKBIL1;;chr14:21566731..21566836,-!p1@ZNF219!1.16!143.06!ZNF219;;chr8:48650697..48650708,-!p2@CEBPD!1.16!100.14!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!1.16!17.88!ZNF467;;chr21:47063625..47063658,+!p1@PCBP3!1.15!57.23!PCBP3;;chr19:56111680..56111716,+!p1@ZNF524!1.15!50.07!ZNF524;;chr19:3359257..3359362,+!p3@NFIC!1.15!39.34!NFIC;;chr10:77161133..77161176,-!p3@ZNF503!1.15!28.61!ZNF503;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.88!FOXF2;;chr20:48807875..48807982,+!p2@CEBPB!1.14!275.40!CEBPB;;chr1:8483878..8483907,-!p4@RERE!1.14!50.07!RERE;;chr19:18392236..18392248,-!p2@JUND!1.13!82.26!JUND;;chr3:12330560..12330579,+!p1@PPARG!1.13!14.31!PPARG;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.31!PRRX1;;chr20:30193083..30193098,+!p1@ID1!1.12!969.25!ID1;;chr10:77161504..77161530,-!p1@ZNF503!1.12!160.95!ZNF503;;chr12:53625966..53626012,-!p2@RARG!1.12!32.19!RARG;;chr19:13134772..13134822,+!p2@NFIX!1.12!17.88!NFIX;;chr19:13106214..13106382,+!p1@NFIX!1.11!275.40!NFIX;;chr16:30583017..30583064,-!p1@ZNF688!1.11!60.80!ZNF688;;chr15:42749722..42749739,-!p2@ZFP106!1.11!21.46!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.46!TBX18;;chr17:3571863..3571881,-!p1@TAX1BP3!1.10!829.76!TAX1BP3;;chr19:56152361..56152434,+!p1@ZNF580!1.10!304.01!ZNF580;;chr19:36545291..36545314,-!p2@THAP8!1.10!28.61!THAP8;;chr13:41240737..41240787,-!p1@FOXO1!1.09!135.91!FOXO1;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.50!BCL6;;chr14:61116183..61116208,-!p1@SIX1!1.09!42.92!SIX1;;chr19:18392250..18392260,-!p4@JUND!1.09!35.77!JUND;;chr17:38465413..38465438,+!p5@RARA!1.09!17.88!RARA;;chr19:46272462..46272562,-!p1@SIX5!1.08!46.50!SIX5;;chr8:145159376..145159407,+!p1@MAF1!1.07!447.07!MAF1;;chr15:96874012..96874042,+!p2@NR2F2!1.07!96.57!NR2F2;;chr1:204042233..204042249,+!p1@SOX13!1.07!67.95!SOX13;;chr9:130954041..130954121,-!p2@CIZ1!1.07!46.50!CIZ1;;chr19:45261550..45261641,+!p6@BCL3!1.07!17.88!BCL3;;chr17:17723746..17723766,-!p5@SREBF1!1.07!17.88!SREBF1;;chr19:17356189..17356221,-!p2@NR2F6!1.07!17.88!NR2F6;;chr16:54320127..54320148,-!p6@IRX3!1.07!10.73!IRX3;;chr16:67198633..67198671,+!p1@HSF4!1.07!10.73!HSF4;;chr17:59477403..59477414,+!p4@TBX2!1.07!10.73!TBX2;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.73!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.07!10.73!PRRX1;;chr11:47279491..47279502,+!p6@NR1H3!1.07!10.73!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.73!HOXC9;;chr7:73038839..73038862,-!p1@MLXIPL!1.07!10.73!MLXIPL;;chr8:25902876..25902936,-!p1@EBF2!1.07!10.73!EBF2;;chr9:1050331..1050363,+!p1@DMRT2!1.07!10.73!DMRT2;;chr21:47063590..47063597,+!p2@PCBP3!1.07!10.73!PCBP3;;chr2:176987441..176987454,+!p1@HOXD9!1.07!10.73!HOXD9;;chr2:85981271..85981289,+!p9@ATOH8!1.07!10.73!ATOH8;;chr3:42695180..42695201,+!p2@ZBTB47!1.07!10.73!ZBTB47;;chr17:38498594..38498661,+!p2@RARA!1.06!35.77!RARA;;chr9:117150254..117150271,-!p1@AKNA!1.06!28.61!AKNA;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.31!PRRX1;;chr8:145159415..145159438,+!p2@MAF1!1.05!200.29!MAF1;;chr16:29816957..29817031,+!p7@MAZ!1.05!46.50!MAZ;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.31!HOXB7;;chr8:128748308..128748324,+!p2@MYC!1.04!278.97!MYC;;chr16:54320158..54320200,-!p5@IRX3!1.04!14.31!IRX3;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.73!SHOX2;;chr7:44143978..44143989,+!p2@AEBP1!1.03!17.88!AEBP1;;chr8:72756267..72756296,-!p4@MSC!1.03!14.31!MSC;;chr11:64073022..64073056,+!p1@ESRRA!1.02!114.45!ESRRA;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!1.02!46.50!GLIS2;;chr16:29819446..29819471,+!p9@MAZ!1.02!28.61!MAZ;;chr2:145282041..145282092,-!p8@ZEB2!1.02!14.31!ZEB2;;chr11:46299186..46299195,+!p3@CREB3L1!1.02!10.73!CREB3L1;;chr19:3366570..3366619,+!p1@NFIC!1.01!300.43!NFIC;;chr19:3359591..3359667,+!p2@NFIC!1.01!107.30!NFIC;;chr7:148892629..148892651,+!p2@ZNF282!1.01!57.23!ZNF282;;chr11:65687158..65687216,+!p4@DRAP1!1.01!53.65!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!1.01!35.77!TSC22D3;;chr9:73029219..73029289,-!p2@KLF9!1.01!28.61!KLF9;;chr19:56152332..56152347,+!p4@ZNF580!1.01!21.46!ZNF580;;chr15:96874145..96874166,+!p7@NR2F2!1.01!17.88!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!1.01!10.73!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!1.00!67.95!NR2F2;;chr11:62521614..62521646,-!p1@ZBTB3!1.00!46.50!ZBTB3;;chr17:61920116..61920131,-!p5@SMARCD2!1.00!17.88!SMARCD2;;chr19:58987711..58987729,+!p2@ZNF446!1.00!14.31!ZNF446;;chr19:56092195..56092248,-!p1@ZNF579!0.99!96.57!ZNF579;;chr4:2263861..2263883,-!p2@MXD4!0.99!53.65!MXD4;;chr20:42543506..42543549,+!p2@TOX2!0.99!21.46!TOX2;;chr19:49140572..49140594,-!p2@DBP!0.99!14.31!DBP;;chr7:100076765..100076861,-!p1@TSC22D4!0.98!304.01!TSC22D4;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.61!NR2F1;;chr2:747304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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 43: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11537-120A7 | |||
|is_a=EFO:0002091;;FF:0000096 | |||
|is_obsolete= | |||
|library_id=CNhs11345 | |||
|library_id_phase_based=2:CNhs11345 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11537 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GCCAAT.11537 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11537 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GCCAAT.11537 | |||
|name=Mesenchymal Stem Cells - adipose, donor1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11345,LSID769,release014,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10015,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.751006279343671,0,0.907506892556683,0.0478662311990545,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.672351423562044,0,0,0,0,0,0,0,0,0.306054770663162,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033251000693357,0.464501544187516,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233896197853535,0,0,0,0.702508679137395,1.17459916989034,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |||
|rna_catalog_number=SC7515 | |||
|rna_concentration=1.6 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=A7 | |||
|rna_rin=9.2 | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=120A7 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10015.GCCAAT | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:2447 | |||
|sample_cell_type=mesenchymal stem cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.2178769389411e-316!GO:0005737;cytoplasm;1.50228004151571e-135!GO:0044444;cytoplasmic part;1.01663964027152e-105!GO:0043226;organelle;5.93940392132621e-91!GO:0043229;intracellular organelle;1.02701679212156e-90!GO:0043231;intracellular membrane-bound organelle;2.55919689961538e-88!GO:0043227;membrane-bound organelle;3.59445484300475e-88!GO:0044422;organelle part;1.19945387028288e-71!GO:0044446;intracellular organelle part;9.37476876074268e-71!GO:0005739;mitochondrion;3.18609829385345e-51!GO:0005515;protein binding;4.02799370103981e-50!GO:0044237;cellular metabolic process;4.40595573734314e-44!GO:0044238;primary metabolic process;9.1076288558067e-44!GO:0032991;macromolecular complex;1.56169936467422e-43!GO:0030529;ribonucleoprotein complex;1.56169936467422e-43!GO:0031090;organelle membrane;4.00932128529786e-37!GO:0043170;macromolecule metabolic process;1.0341437671949e-33!GO:0005840;ribosome;1.07015234031975e-33!GO:0009058;biosynthetic process;1.11564425749867e-33!GO:0043233;organelle lumen;1.11564425749867e-33!GO:0031974;membrane-enclosed lumen;1.11564425749867e-33!GO:0019538;protein metabolic process;8.14946372888619e-31!GO:0044249;cellular biosynthetic process;9.35992985298758e-31!GO:0044429;mitochondrial part;5.71942901491325e-30!GO:0003735;structural constituent of ribosome;6.6105870463058e-30!GO:0003723;RNA binding;3.17181367653424e-28!GO:0006412;translation;3.4435874028927e-28!GO:0044260;cellular macromolecule metabolic process;1.26836962673913e-27!GO:0033279;ribosomal subunit;1.75210101854423e-27!GO:0005829;cytosol;5.5864656011643e-27!GO:0044267;cellular protein metabolic process;2.33033462753719e-26!GO:0016043;cellular component organization and biogenesis;1.88954534086639e-25!GO:0044428;nuclear part;7.33035085666063e-25!GO:0009059;macromolecule biosynthetic process;9.4709764148507e-25!GO:0031967;organelle envelope;2.09283199630004e-24!GO:0031975;envelope;3.61472483888551e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.16546142742044e-24!GO:0005740;mitochondrial envelope;1.82461203993436e-21!GO:0043234;protein complex;5.59450193806888e-21!GO:0031966;mitochondrial membrane;2.05976593708667e-20!GO:0006396;RNA processing;6.27440848845701e-20!GO:0015031;protein transport;2.42799404414894e-19!GO:0019866;organelle inner membrane;4.68718438289215e-19!GO:0033036;macromolecule localization;9.81700256035094e-19!GO:0005743;mitochondrial inner membrane;1.12161585919899e-18!GO:0065003;macromolecular complex assembly;1.13650191938843e-18!GO:0044445;cytosolic part;6.29942805717223e-18!GO:0045184;establishment of protein localization;6.33060475698866e-18!GO:0008104;protein localization;6.67054172628863e-18!GO:0005634;nucleus;2.07220834705789e-17!GO:0022607;cellular component assembly;2.49789794919264e-17!GO:0005783;endoplasmic reticulum;1.96900498655409e-16!GO:0016071;mRNA metabolic process;2.19215551925162e-16!GO:0031981;nuclear lumen;2.87701063867373e-16!GO:0006119;oxidative phosphorylation;5.37248374561375e-16!GO:0046907;intracellular transport;2.69218458234307e-15!GO:0044432;endoplasmic reticulum part;3.25900029755485e-15!GO:0015934;large ribosomal subunit;6.38904111783534e-15!GO:0044455;mitochondrial membrane part;1.7405086625684e-14!GO:0012505;endomembrane system;2.05103576295847e-14!GO:0006996;organelle organization and biogenesis;5.3779128463034e-14!GO:0048770;pigment granule;5.91019438369867e-14!GO:0042470;melanosome;5.91019438369867e-14!GO:0008134;transcription factor binding;8.06310882888589e-14!GO:0005746;mitochondrial respiratory chain;8.37773677391862e-14!GO:0015935;small ribosomal subunit;1.91819687712642e-13!GO:0006397;mRNA processing;2.80081173331133e-13!GO:0006886;intracellular protein transport;4.27458706781064e-13!GO:0016491;oxidoreductase activity;8.52836365345248e-13!GO:0051186;cofactor metabolic process;1.39374081901393e-12!GO:0008380;RNA splicing;1.66054964103048e-12!GO:0005794;Golgi apparatus;3.31610053134255e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.19472630628262e-12!GO:0031980;mitochondrial lumen;5.69015619095703e-12!GO:0005759;mitochondrial matrix;5.69015619095703e-12!GO:0010467;gene expression;8.67724451215905e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.72362925399787e-12!GO:0043283;biopolymer metabolic process;2.71499847057991e-11!GO:0050136;NADH dehydrogenase (quinone) activity;3.38562944250142e-11!GO:0003954;NADH dehydrogenase activity;3.38562944250142e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.38562944250142e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.88353977342178e-11!GO:0043228;non-membrane-bound organelle;3.89284874371225e-11!GO:0043232;intracellular non-membrane-bound organelle;3.89284874371225e-11!GO:0006457;protein folding;2.21272930788995e-10!GO:0005789;endoplasmic reticulum membrane;2.2830234411727e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.57506723724655e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.09715960133016e-10!GO:0005654;nucleoplasm;3.16597485297058e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.05613962735611e-10!GO:0006732;coenzyme metabolic process;4.22484870903037e-10!GO:0016874;ligase activity;8.86206826920525e-10!GO:0044451;nucleoplasm part;9.27041329285494e-10!GO:0030964;NADH dehydrogenase complex (quinone);9.30966335471177e-10!GO:0045271;respiratory chain complex I;9.30966335471177e-10!GO:0005747;mitochondrial respiratory chain complex I;9.30966335471177e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.67142312010668e-09!GO:0042773;ATP synthesis coupled electron transport;1.67142312010668e-09!GO:0016817;hydrolase activity, acting on acid anhydrides;2.16071447071944e-09!GO:0016462;pyrophosphatase activity;2.33638183927959e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.50662047324855e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.77506506598278e-09!GO:0012501;programmed cell death;3.25505553585102e-09!GO:0005681;spliceosome;3.99099816276299e-09!GO:0017111;nucleoside-triphosphatase activity;4.87815649235152e-09!GO:0000166;nucleotide binding;5.50375707785576e-09!GO:0006915;apoptosis;5.67328868752683e-09!GO:0005793;ER-Golgi intermediate compartment;6.02962980342957e-09!GO:0006091;generation of precursor metabolites and energy;6.02962980342957e-09!GO:0003712;transcription cofactor activity;9.90042494115532e-09!GO:0008219;cell death;1.30263511892427e-08!GO:0016265;death;1.30263511892427e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.27557370344309e-08!GO:0009055;electron carrier activity;2.53663348050199e-08!GO:0044248;cellular catabolic process;2.94706683297506e-08!GO:0048523;negative regulation of cellular process;5.23860328581611e-08!GO:0022618;protein-RNA complex assembly;7.782400402682e-08!GO:0051641;cellular localization;1.23001787267108e-07!GO:0008135;translation factor activity, nucleic acid binding;1.50684933756271e-07!GO:0016192;vesicle-mediated transport;1.83075669083725e-07!GO:0051649;establishment of cellular localization;2.04624817320524e-07!GO:0051082;unfolded protein binding;2.58667408967411e-07!GO:0006605;protein targeting;3.10222063703692e-07!GO:0048193;Golgi vesicle transport;3.91688673922858e-07!GO:0006259;DNA metabolic process;3.91688673922858e-07!GO:0043412;biopolymer modification;4.18970925093213e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.18998412562389e-07!GO:0006446;regulation of translational initiation;5.2945835262776e-07!GO:0048519;negative regulation of biological process;5.80142003547636e-07!GO:0017076;purine nucleotide binding;5.8655188583004e-07!GO:0005773;vacuole;6.51616023222308e-07!GO:0044265;cellular macromolecule catabolic process;6.6313516244925e-07!GO:0016049;cell growth;7.45351193001943e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.89724789189008e-07!GO:0005788;endoplasmic reticulum lumen;9.43236632241518e-07!GO:0009150;purine ribonucleotide metabolic process;1.11661099251007e-06!GO:0042981;regulation of apoptosis;1.11661099251007e-06!GO:0009057;macromolecule catabolic process;1.2561280354754e-06!GO:0043067;regulation of programmed cell death;1.26049620389795e-06!GO:0005761;mitochondrial ribosome;1.51298206706511e-06!GO:0000313;organellar ribosome;1.51298206706511e-06!GO:0006323;DNA packaging;1.55748914862685e-06!GO:0008361;regulation of cell size;1.68203370524615e-06!GO:0006461;protein complex assembly;1.94886904948293e-06!GO:0006366;transcription from RNA polymerase II promoter;2.22834604153648e-06!GO:0045786;negative regulation of progression through cell cycle;2.46077569905358e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.96329258665802e-06!GO:0032553;ribonucleotide binding;2.97356550304667e-06!GO:0032555;purine ribonucleotide binding;2.97356550304667e-06!GO:0006163;purine nucleotide metabolic process;3.10842711808976e-06!GO:0006512;ubiquitin cycle;3.15813245959168e-06!GO:0043285;biopolymer catabolic process;3.20285575710193e-06!GO:0001558;regulation of cell growth;3.29089788792021e-06!GO:0051188;cofactor biosynthetic process;3.4584297424053e-06!GO:0008639;small protein conjugating enzyme activity;3.6539791432966e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.88851485327966e-06!GO:0009259;ribonucleotide metabolic process;3.94754581259831e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.34918234776211e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.45325211974132e-06!GO:0006464;protein modification process;4.49199012260479e-06!GO:0015986;ATP synthesis coupled proton transport;5.04447134518738e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.04447134518738e-06!GO:0008610;lipid biosynthetic process;5.54375591700897e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.8660654810139e-06!GO:0000323;lytic vacuole;6.34683722557963e-06!GO:0005764;lysosome;6.34683722557963e-06!GO:0009141;nucleoside triphosphate metabolic process;6.92197444999701e-06!GO:0004842;ubiquitin-protein ligase activity;6.98833987565826e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.40614363893596e-06!GO:0009144;purine nucleoside triphosphate metabolic process;7.40614363893596e-06!GO:0009117;nucleotide metabolic process;7.40614363893596e-06!GO:0005768;endosome;8.25259454320409e-06!GO:0005730;nucleolus;9.79019818103178e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.01476477877287e-05!GO:0000375;RNA splicing, via transesterification reactions;1.01476477877287e-05!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.01476477877287e-05!GO:0016564;transcription repressor activity;1.02288351126099e-05!GO:0003714;transcription corepressor activity;1.02288351126099e-05!GO:0006333;chromatin assembly or disassembly;1.14211201548802e-05!GO:0006164;purine nucleotide biosynthetic process;1.19530760147203e-05!GO:0044262;cellular carbohydrate metabolic process;1.22876596883642e-05!GO:0030554;adenyl nucleotide binding;1.45326060481014e-05!GO:0019787;small conjugating protein ligase activity;1.50479905458426e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56654965144088e-05!GO:0003743;translation initiation factor activity;1.58746179826287e-05!GO:0016563;transcription activator activity;1.58746179826287e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.62968124753144e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.62968124753144e-05!GO:0051726;regulation of cell cycle;1.76421654883803e-05!GO:0046034;ATP metabolic process;1.80713399679871e-05!GO:0008654;phospholipid biosynthetic process;1.81744121575608e-05!GO:0019829;cation-transporting ATPase activity;1.87909876415468e-05!GO:0000074;regulation of progression through cell cycle;1.91249476306267e-05!GO:0009260;ribonucleotide biosynthetic process;2.01867208868053e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.05284749727766e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.05284749727766e-05!GO:0006334;nucleosome assembly;2.46501155214607e-05!GO:0040008;regulation of growth;2.79476957719812e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.83661017006873e-05!GO:0030120;vesicle coat;3.01740226903599e-05!GO:0030662;coated vesicle membrane;3.01740226903599e-05!GO:0016740;transferase activity;3.17049905547454e-05!GO:0048475;coated membrane;3.17731694668347e-05!GO:0030117;membrane coat;3.17731694668347e-05!GO:0048522;positive regulation of cellular process;3.3062689774713e-05!GO:0031497;chromatin assembly;3.48734192552542e-05!GO:0006413;translational initiation;4.02693569606709e-05!GO:0044431;Golgi apparatus part;4.15052232763245e-05!GO:0008565;protein transporter activity;4.29166269419919e-05!GO:0006754;ATP biosynthetic process;4.5022521601306e-05!GO:0006753;nucleoside phosphate metabolic process;4.5022521601306e-05!GO:0016881;acid-amino acid ligase activity;4.54448245872109e-05!GO:0009056;catabolic process;4.61271250290332e-05!GO:0003713;transcription coactivator activity;4.93714352949602e-05!GO:0065004;protein-DNA complex assembly;5.22685747459584e-05!GO:0030532;small nuclear ribonucleoprotein complex;5.31207737280132e-05!GO:0044440;endosomal part;5.47317487532217e-05!GO:0010008;endosome membrane;5.47317487532217e-05!GO:0003924;GTPase activity;5.85170981605014e-05!GO:0032559;adenyl ribonucleotide binding;5.874534832342e-05!GO:0009060;aerobic respiration;6.68576232577423e-05!GO:0000502;proteasome complex (sensu Eukaryota);6.82237735393772e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.82237735393772e-05!GO:0006399;tRNA metabolic process;7.06860624630052e-05!GO:0043687;post-translational protein modification;7.26331403582429e-05!GO:0005524;ATP binding;7.26685867364659e-05!GO:0006916;anti-apoptosis;8.37330507979613e-05!GO:0006913;nucleocytoplasmic transport;8.40173111342957e-05!GO:0031252;leading edge;8.80345763369641e-05!GO:0043069;negative regulation of programmed cell death;8.94526869056038e-05!GO:0031988;membrane-bound vesicle;9.05753512638953e-05!GO:0005635;nuclear envelope;9.09803677676427e-05!GO:0045259;proton-transporting ATP synthase complex;9.10540711085797e-05!GO:0006082;organic acid metabolic process;9.32841997447648e-05!GO:0043066;negative regulation of apoptosis;0.000100567735893117!GO:0051169;nuclear transport;0.000110219362842036!GO:0045333;cellular respiration;0.000119680340727733!GO:0005905;coated pit;0.000122490833874359!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000125103797452875!GO:0019752;carboxylic acid metabolic process;0.000136074223534604!GO:0019899;enzyme binding;0.000167848284638404!GO:0030176;integral to endoplasmic reticulum membrane;0.000177945056829284!GO:0019843;rRNA binding;0.000178375997446009!GO:0005770;late endosome;0.000180637328220105!GO:0006793;phosphorus metabolic process;0.00018378581651891!GO:0006796;phosphate metabolic process;0.00018378581651891!GO:0016853;isomerase activity;0.000196998333043466!GO:0016469;proton-transporting two-sector ATPase complex;0.000217864424562961!GO:0016310;phosphorylation;0.000219411396035578!GO:0016604;nuclear body;0.000220818956725762!GO:0005774;vacuolar membrane;0.00022968658176427!GO:0051276;chromosome organization and biogenesis;0.000231556143584021!GO:0009108;coenzyme biosynthetic process;0.000237279195990813!GO:0046474;glycerophospholipid biosynthetic process;0.000241379527810815!GO:0006118;electron transport;0.000247056377872349!GO:0006066;alcohol metabolic process;0.000250910020769816!GO:0005762;mitochondrial large ribosomal subunit;0.000252055228958602!GO:0000315;organellar large ribosomal subunit;0.000252055228958602!GO:0016887;ATPase activity;0.000261859218192117!GO:0030029;actin filament-based process;0.000284119572506028!GO:0030163;protein catabolic process;0.000287160242152087!GO:0005667;transcription factor complex;0.000290511374901021!GO:0042623;ATPase activity, coupled;0.000334308859828728!GO:0006752;group transfer coenzyme metabolic process;0.000380948149092516!GO:0007049;cell cycle;0.000401265008051376!GO:0017038;protein import;0.000414997716581512!GO:0006888;ER to Golgi vesicle-mediated transport;0.000422369903847124!GO:0051603;proteolysis involved in cellular protein catabolic process;0.000439045977539413!GO:0016568;chromatin modification;0.000460939633799508!GO:0044255;cellular lipid metabolic process;0.000462253723306376!GO:0048518;positive regulation of biological process;0.000510414453533801!GO:0016607;nuclear speck;0.000513043723487621!GO:0044437;vacuolar part;0.000547447246919683!GO:0031324;negative regulation of cellular metabolic process;0.000551821114281262!GO:0065009;regulation of a molecular function;0.000594679471131998!GO:0046467;membrane lipid biosynthetic process;0.000617963706158586!GO:0044257;cellular protein catabolic process;0.000618712135380595!GO:0019941;modification-dependent protein catabolic process;0.000632077112564284!GO:0043632;modification-dependent macromolecule catabolic process;0.000632077112564284!GO:0051187;cofactor catabolic process;0.000632077112564284!GO:0016787;hydrolase activity;0.000644468162048722!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000644468162048722!GO:0004812;aminoacyl-tRNA ligase activity;0.000644468162048722!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000644468162048722!GO:0031982;vesicle;0.000647309720890433!GO:0031410;cytoplasmic vesicle;0.00068743130460683!GO:0051246;regulation of protein metabolic process;0.000723077017660092!GO:0000139;Golgi membrane;0.000755906790754311!GO:0045454;cell redox homeostasis;0.000757901016778052!GO:0015980;energy derivation by oxidation of organic compounds;0.000839502921599936!GO:0005791;rough endoplasmic reticulum;0.000856939801862061!GO:0007005;mitochondrion organization and biogenesis;0.000899736280150623!GO:0030132;clathrin coat of coated pit;0.000908595916583077!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000913288364445648!GO:0048037;cofactor binding;0.00093462528884077!GO:0006511;ubiquitin-dependent protein catabolic process;0.000965781657770117!GO:0033116;ER-Golgi intermediate compartment membrane;0.00104103734793638!GO:0005765;lysosomal membrane;0.00104892827718054!GO:0051789;response to protein stimulus;0.00109362929522294!GO:0006986;response to unfolded protein;0.00109362929522294!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00110013563590095!GO:0031965;nuclear membrane;0.00110591903203321!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00111270972965308!GO:0030867;rough endoplasmic reticulum membrane;0.00111536026715561!GO:0030133;transport vesicle;0.00111536026715561!GO:0007050;cell cycle arrest;0.00115450749488387!GO:0006099;tricarboxylic acid cycle;0.00117062741349972!GO:0046356;acetyl-CoA catabolic process;0.00117062741349972!GO:0043038;amino acid activation;0.00121084757740971!GO:0006418;tRNA aminoacylation for protein translation;0.00121084757740971!GO:0043039;tRNA aminoacylation;0.00121084757740971!GO:0045926;negative regulation of growth;0.00124523291517005!GO:0009109;coenzyme catabolic process;0.00124659732326204!GO:0005581;collagen;0.00126164534747709!GO:0051427;hormone receptor binding;0.00129572735139094!GO:0006084;acetyl-CoA metabolic process;0.00129934490625197!GO:0030308;negative regulation of cell growth;0.00130860761321456!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00131433269674687!GO:0000786;nucleosome;0.00135563574450576!GO:0006979;response to oxidative stress;0.00136535303207643!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00145701380777143!GO:0015002;heme-copper terminal oxidase activity;0.00145701380777143!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00145701380777143!GO:0004129;cytochrome-c oxidase activity;0.00145701380777143!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00145701380777143!GO:0015399;primary active transmembrane transporter activity;0.00145701380777143!GO:0031902;late endosome membrane;0.00154413299803049!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00159932857047038!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00159932857047038!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00189450515282838!GO:0050662;coenzyme binding;0.0019280967784305!GO:0035257;nuclear hormone receptor binding;0.00201234602174093!GO:0048468;cell development;0.00202419223797498!GO:0006629;lipid metabolic process;0.00214879347307614!GO:0043492;ATPase activity, coupled to movement of substances;0.00221114951875622!GO:0000151;ubiquitin ligase complex;0.00226101089956185!GO:0005839;proteasome core complex (sensu Eukaryota);0.00233765546578578!GO:0031968;organelle outer membrane;0.00235769245254501!GO:0004364;glutathione transferase activity;0.00235769245254501!GO:0019318;hexose metabolic process;0.00240657247061297!GO:0009892;negative regulation of metabolic process;0.00241787545147593!GO:0009165;nucleotide biosynthetic process;0.00278454362899839!GO:0050794;regulation of cellular process;0.00287006952384252!GO:0019867;outer membrane;0.00287006952384252!GO:0005798;Golgi-associated vesicle;0.00288267885362978!GO:0042254;ribosome biogenesis and assembly;0.00304204886684228!GO:0005741;mitochondrial outer membrane;0.00318896657683458!GO:0005996;monosaccharide metabolic process;0.00330888264591235!GO:0000785;chromatin;0.00336796574469413!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00341690086799562!GO:0045792;negative regulation of cell size;0.00354249051221136!GO:0032446;protein modification by small protein conjugation;0.00357197340962495!GO:0016125;sterol metabolic process;0.00357197340962495!GO:0051920;peroxiredoxin activity;0.00395586086367555!GO:0016567;protein ubiquitination;0.00395586086367555!GO:0046489;phosphoinositide biosynthetic process;0.00409164798058693!GO:0043065;positive regulation of apoptosis;0.00413829565302795!GO:0043068;positive regulation of programmed cell death;0.00418466692873113!GO:0043623;cellular protein complex assembly;0.00445557271808916!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00445557271808916!GO:0022890;inorganic cation transmembrane transporter activity;0.0044832474058506!GO:0042802;identical protein binding;0.00503068575266454!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00505528774026734!GO:0005583;fibrillar collagen;0.0051003313209882!GO:0051170;nuclear import;0.00511858950643769!GO:0043488;regulation of mRNA stability;0.00525908364009579!GO:0043487;regulation of RNA stability;0.00525908364009579!GO:0005525;GTP binding;0.00557508611423561!GO:0008250;oligosaccharyl transferase complex;0.00559804101603202!GO:0006606;protein import into nucleus;0.00579964051440504!GO:0051329;interphase of mitotic cell cycle;0.00581710923948435!GO:0016044;membrane organization and biogenesis;0.00595031911298806!GO:0008652;amino acid biosynthetic process;0.00638040203584559!GO:0022402;cell cycle process;0.00662069401363792!GO:0051098;regulation of binding;0.00672179526851615!GO:0016070;RNA metabolic process;0.00691147855625482!GO:0016126;sterol biosynthetic process;0.00715366692205399!GO:0004298;threonine endopeptidase activity;0.00742860551032285!GO:0043433;negative regulation of transcription factor activity;0.00748289363067619!GO:0016860;intramolecular oxidoreductase activity;0.00754652081065783!GO:0008637;apoptotic mitochondrial changes;0.00760249816061634!GO:0001953;negative regulation of cell-matrix adhesion;0.00769280350869056!GO:0008092;cytoskeletal protein binding;0.00790342165817448!GO:0000902;cell morphogenesis;0.00807634923265464!GO:0032989;cellular structure morphogenesis;0.00807634923265464!GO:0030145;manganese ion binding;0.00823022553588926!GO:0044453;nuclear membrane part;0.00833098372843636!GO:0006740;NADPH regeneration;0.00848393956723221!GO:0006098;pentose-phosphate shunt;0.00848393956723221!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00856224923969793!GO:0006414;translational elongation;0.00856342572724148!GO:0022408;negative regulation of cell-cell adhesion;0.00866622458400037!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00876005470435825!GO:0007264;small GTPase mediated signal transduction;0.00885697100847907!GO:0046394;carboxylic acid biosynthetic process;0.00885697100847907!GO:0016053;organic acid biosynthetic process;0.00885697100847907!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00885726672573538!GO:0006778;porphyrin metabolic process;0.00903129298429783!GO:0033013;tetrapyrrole metabolic process;0.00903129298429783!GO:0005975;carbohydrate metabolic process;0.00925702447076405!GO:0043284;biopolymer biosynthetic process;0.00925702447076405!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00989183783113052!GO:0003817;complement factor D activity;0.00991036961691093!GO:0006917;induction of apoptosis;0.00994858159478506!GO:0006790;sulfur metabolic process;0.0100867159600397!GO:0016859;cis-trans isomerase activity;0.010185763978056!GO:0016481;negative regulation of transcription;0.0102493749961369!GO:0017166;vinculin binding;0.0105443373584543!GO:0045941;positive regulation of transcription;0.0107617440994934!GO:0051252;regulation of RNA metabolic process;0.0111080300934322!GO:0043021;ribonucleoprotein binding;0.0111669532515279!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0111669532515279!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0113789095244637!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.011547120628755!GO:0000245;spliceosome assembly;0.0115519166405409!GO:0065002;intracellular protein transport across a membrane;0.0117053029095786!GO:0012502;induction of programmed cell death;0.012538777147314!GO:0006650;glycerophospholipid metabolic process;0.0127102568468396!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0128554316095813!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0128554316095813!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0128554316095813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0130949035680578!GO:0007265;Ras protein signal transduction;0.0132533348428904!GO:0008629;induction of apoptosis by intracellular signals;0.013325278099261!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0134944695680011!GO:0008632;apoptotic program;0.0138963742577081!GO:0031272;regulation of pseudopodium formation;0.0139844492048399!GO:0031269;pseudopodium formation;0.0139844492048399!GO:0031344;regulation of cell projection organization and biogenesis;0.0139844492048399!GO:0031268;pseudopodium organization and biogenesis;0.0139844492048399!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0139844492048399!GO:0031274;positive regulation of pseudopodium formation;0.0139844492048399!GO:0007243;protein kinase cascade;0.0140649325080969!GO:0003746;translation elongation factor activity;0.0140921798103786!GO:0005813;centrosome;0.0142170878217035!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0144250596486473!GO:0030027;lamellipodium;0.0146152250586056!GO:0004576;oligosaccharyl transferase activity;0.0148158885488864!GO:0040029;regulation of gene expression, epigenetic;0.0158018555156379!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0160455598360914!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0160455598360914!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0160492355060797!GO:0030137;COPI-coated vesicle;0.0163111868536708!GO:0001836;release of cytochrome c from mitochondria;0.0164230541196974!GO:0051101;regulation of DNA binding;0.0164230541196974!GO:0008026;ATP-dependent helicase activity;0.0167950608279515!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0168516553287516!GO:0006013;mannose metabolic process;0.0168762300498231!GO:0051287;NAD binding;0.0173855094614705!GO:0005815;microtubule organizing center;0.0175093442614134!GO:0006779;porphyrin biosynthetic process;0.0175585847177183!GO:0033014;tetrapyrrole biosynthetic process;0.0175585847177183!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.017830457767061!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0178554920128365!GO:0030663;COPI coated vesicle membrane;0.0182296842823644!GO:0030126;COPI vesicle coat;0.0182296842823644!GO:0008203;cholesterol metabolic process;0.018491484988106!GO:0005885;Arp2/3 protein complex;0.0188244958051946!GO:0015992;proton transport;0.0194188089816856!GO:0006289;nucleotide-excision repair;0.0197234039531744!GO:0006364;rRNA processing;0.0198280030149344!GO:0046870;cadmium ion binding;0.0201840470047718!GO:0006818;hydrogen transport;0.0205798127175431!GO:0005769;early endosome;0.0211134454600487!GO:0004860;protein kinase inhibitor activity;0.0211698327681604!GO:0051235;maintenance of localization;0.0212284930344288!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0215488964988124!GO:0007346;regulation of progression through mitotic cell cycle;0.0222750722657869!GO:0030658;transport vesicle membrane;0.0224280778921251!GO:0050749;apolipoprotein E receptor binding;0.0231741940339225!GO:0016072;rRNA metabolic process;0.0234423152742851!GO:0015630;microtubule cytoskeleton;0.0234423152742851!GO:0042158;lipoprotein biosynthetic process;0.0236150612965919!GO:0006897;endocytosis;0.0239054709008403!GO:0010324;membrane invagination;0.0239054709008403!GO:0030118;clathrin coat;0.0244860099172915!GO:0050789;regulation of biological process;0.0244860099172915!GO:0045893;positive regulation of transcription, DNA-dependent;0.0244860099172915!GO:0032507;maintenance of cellular protein localization;0.024564232315538!GO:0006613;cotranslational protein targeting to membrane;0.0248056311955851!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0252980088039436!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0252980088039436!GO:0006633;fatty acid biosynthetic process;0.0253635364343151!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0255579087264081!GO:0007010;cytoskeleton organization and biogenesis;0.0258208428336857!GO:0001726;ruffle;0.0258313183765999!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0259606132761799!GO:0007040;lysosome organization and biogenesis;0.0262172932946987!GO:0032561;guanyl ribonucleotide binding;0.0264706929646517!GO:0019001;guanyl nucleotide binding;0.0264706929646517!GO:0006739;NADP metabolic process;0.0265803515906832!GO:0000030;mannosyltransferase activity;0.0267193582191372!GO:0033559;unsaturated fatty acid metabolic process;0.0267865942379605!GO:0006636;unsaturated fatty acid biosynthetic process;0.0267865942379605!GO:0032787;monocarboxylic acid metabolic process;0.0270245107257629!GO:0035035;histone acetyltransferase binding;0.0270245107257629!GO:0003697;single-stranded DNA binding;0.028069261753303!GO:0045892;negative regulation of transcription, DNA-dependent;0.0281254022596904!GO:0008430;selenium binding;0.0281729292596684!GO:0003756;protein disulfide isomerase activity;0.0286424000075326!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0286424000075326!GO:0006914;autophagy;0.0286424000075326!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0286918127148385!GO:0046930;pore complex;0.0289051811921466!GO:0006695;cholesterol biosynthetic process;0.0291302476650574!GO:0006506;GPI anchor biosynthetic process;0.0298651510390258!GO:0035258;steroid hormone receptor binding;0.030101517047778!GO:0044420;extracellular matrix part;0.030101517047778!GO:0050790;regulation of catalytic activity;0.0304423732487991!GO:0042168;heme metabolic process;0.03074858691325!GO:0005048;signal sequence binding;0.031112589048509!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0318358358634332!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0318358358634332!GO:0006595;polyamine metabolic process;0.0319169013344094!GO:0004177;aminopeptidase activity;0.0319650194085968!GO:0051325;interphase;0.0321491895254645!GO:0008033;tRNA processing;0.0324227763914157!GO:0003899;DNA-directed RNA polymerase activity;0.0327567763059503!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0343970128234648!GO:0031589;cell-substrate adhesion;0.0348466129706811!GO:0005643;nuclear pore;0.0353753408954322!GO:0000049;tRNA binding;0.0355035831669452!GO:0006807;nitrogen compound metabolic process;0.0362909837845047!GO:0006497;protein amino acid lipidation;0.0366942782514724!GO:0006012;galactose metabolic process;0.0369315761451215!GO:0051651;maintenance of cellular localization;0.0379229256024679!GO:0030031;cell projection biogenesis;0.0384348738213235!GO:0007006;mitochondrial membrane organization and biogenesis;0.0392789613842698!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0392789613842698!GO:0046813;virion attachment, binding of host cell surface receptor;0.0392789613842698!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0392789613842698!GO:0006505;GPI anchor metabolic process;0.0396508516930176!GO:0006612;protein targeting to membrane;0.0400318909494129!GO:0003676;nucleic acid binding;0.0401284568715514!GO:0001666;response to hypoxia;0.0401284568715514!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.040176050922135!GO:0004784;superoxide dismutase activity;0.040176050922135!GO:0030660;Golgi-associated vesicle membrane;0.0403435670981338!GO:0000118;histone deacetylase complex;0.0405435326723022!GO:0005684;U2-dependent spliceosome;0.0411299498093865!GO:0045334;clathrin-coated endocytic vesicle;0.0413096055646485!GO:0003729;mRNA binding;0.0416435124767691!GO:0051270;regulation of cell motility;0.0416435124767691!GO:0006643;membrane lipid metabolic process;0.0422025318671077!GO:0018196;peptidyl-asparagine modification;0.0430567371920391!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0430567371920391!GO:0008286;insulin receptor signaling pathway;0.0435096233963017!GO:0005507;copper ion binding;0.0438270599009124!GO:0006631;fatty acid metabolic process;0.043892619839916!GO:0005520;insulin-like growth factor binding;0.0441731986633402!GO:0008147;structural constituent of bone;0.0461422186984752!GO:0045185;maintenance of protein localization;0.0461422186984752!GO:0006749;glutathione metabolic process;0.0462938523253283!GO:0030041;actin filament polymerization;0.0463838109932834!GO:0016301;kinase activity;0.0464514173729023!GO:0017049;GTP-Rho binding;0.0465932533312901!GO:0006974;response to DNA damage stimulus;0.047698675769683!GO:0006509;membrane protein ectodomain proteolysis;0.0477583014533567!GO:0033619;membrane protein proteolysis;0.0477583014533567!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0477583014533567!GO:0030128;clathrin coat of endocytic vesicle;0.0480062141934666!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0480062141934666!GO:0030122;AP-2 adaptor complex;0.0480062141934666!GO:0006007;glucose catabolic process;0.0480891790706833!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0485167310775586!GO:0007033;vacuole organization and biogenesis;0.049349086426231 | |||
|sample_id=11537 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=adipose tissue | |||
|top_motifs=ZNF423:4.01497805892;ZNF238:3.18617306372;ESR1:3.00721149696;TFAP4:2.54161297151;RXR{A,B,G}:2.5006993867;GTF2A1,2:2.42664413043;EBF1:2.35625594225;GLI1..3:2.23794083683;TFAP2{A,C}:2.12676859163;ESRRA:1.91222732934;TFCP2:1.76032962868;SP1:1.74076250656;bHLH_family:1.683690583;ZNF148:1.65644050396;AR:1.60295789667;RXRA_VDR{dimer}:1.4507281933;IKZF1:1.44773881356;HES1:1.41314624311;SRF:1.39318933378;MTF1:1.32212249166;GTF2I:1.30863973228;TAL1_TCF{3,4,12}:1.30706301886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.28946426356;PATZ1:1.1989464318;NR3C1:1.1816432087;NR6A1:1.16013199638;TLX1..3_NFIC{dimer}:1.14785165655;GZF1:1.11347600134;RREB1:1.109560829;HIC1:1.03620847308;POU2F1..3:1.01319477578;XCPE1{core}:0.986797585464;GFI1B:0.980443379861;NR5A1,2:0.93261765802;TFAP2B:0.894534131805;TP53:0.831933240011;HOX{A5,B5}:0.820294235922;HAND1,2:0.810818966707;XBP1:0.8107899971;ATF6:0.787006674074;ZIC1..3:0.769856774944;STAT5{A,B}:0.746544551479;TBP:0.736533038968;TEAD1:0.727826689793;KLF4:0.661828296446;EP300:0.620695686474;LHX3,4:0.619031898669;MAZ:0.580013595478;ZBTB6:0.578688074151;STAT2,4,6:0.527930515256;SPZ1:0.520346661551;HMX1:0.48072746453;PPARG:0.476204132836;HNF4A_NR2F1,2:0.462541797259;REST:0.428799530006;NANOG:0.425256173276;HOX{A6,A7,B6,B7}:0.415956873715;PRRX1,2:0.344297766736;GCM1,2:0.290212876283;NFE2L1:0.258529571316;MZF1:0.255384051463;PBX1:0.176459348707;HNF1A:0.143349553043;NFE2L2:0.127022435601;SREBF1,2:0.115508220709;NFE2:0.0985064560901;TOPORS:0.0927963598971;NKX2-2,8:0.0581769387625;ALX4:0.0567433742529;T:0.0541019810272;RUNX1..3:0.0538737692816;UFEwm:0.0512492638273;NKX2-3_NKX2-5:0.0483001182843;BACH2:0.0425685533827;EGR1..3:0.0385105404822;NHLH1,2:0.0240846888002;CEBPA,B_DDIT3:-0.00738758731388;HLF:-0.0169663286567;YY1:-0.0461228116885;SOX{8,9,10}:-0.0496995469587;PAX5:-0.0516370978334;NFIX:-0.051651484189;PAX1,9:-0.0782359798795;FOXL1:-0.0819168743441;LEF1_TCF7_TCF7L1,2:-0.0855173654509;MYFfamily:-0.085965419688;MED-1{core}:-0.086391009925;EN1,2:-0.0864751299715;LMO2:-0.128795814842;NANOG{mouse}:-0.129256394519;FOS_FOS{B,L1}_JUN{B,D}:-0.135646140875;ZNF143:-0.153538975639;NKX3-2:-0.159347893854;SOX5:-0.16704363596;PDX1:-0.177136409409;NKX3-1:-0.178939130241;MAFB:-0.186113670257;POU6F1:-0.188620608897;NFKB1_REL_RELA:-0.206995430802;RORA:-0.249302491316;TGIF1:-0.255276256165;POU3F1..4:-0.263767931804;ETS1,2:-0.265894024874;FOSL2:-0.29540711819;RBPJ:-0.317802531706;FOX{D1,D2}:-0.330396304841;RFX1:-0.331553290978;MEF2{A,B,C,D}:-0.333744513793;SMAD1..7,9:-0.348297147345;NR1H4:-0.366462739893;NKX2-1,4:-0.366661596898;HIF1A:-0.394380428557;ONECUT1,2:-0.45663555498;GATA6:-0.473943236028;SPIB:-0.484038679429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.487519510391;NFATC1..3:-0.499354897031;ATF4:-0.513499334515;CUX2:-0.529688785892;MTE{core}:-0.536558264383;TLX2:-0.560925504419;FOX{F1,F2,J1}:-0.563040879183;SPI1:-0.578394212931;NFY{A,B,C}:-0.584672667057;SOX17:-0.590350972488;JUN:-0.61213371363;NFIL3:-0.613749712241;FOXQ1:-0.646550773309;ZFP161:-0.660928097513;DBP:-0.67608403473;STAT1,3:-0.685717217539;DMAP1_NCOR{1,2}_SMARC:-0.694104503511;FOXO1,3,4:-0.733139937598;IRF1,2:-0.754699030201;HOX{A4,D4}:-0.762438680662;FOXP3:-0.790339413761;ATF2:-0.814897641567;CREB1:-0.840273735979;MYOD1:-0.872282617468;SNAI1..3:-0.917736447138;VSX1,2:-0.945141465143;TFDP1:-1.04128368089;CDC5L:-1.04625556222;HSF1,2:-1.0954520931;GFI1:-1.10049460199;FOXA2:-1.11035574075;EVI1:-1.11248653094;SOX2:-1.14078136017;CRX:-1.1585726739;OCT4_SOX2{dimer}:-1.19234724115;E2F1..5:-1.19905175079;ZEB1:-1.20232835179;MYBL2:-1.20679338472;GATA4:-1.23779180624;POU5F1:-1.2480534702;PAX3,7:-1.25181558431;IRF7:-1.26061874226;ADNP_IRX_SIX_ZHX:-1.33073310178;BPTF:-1.33677967653;ATF5_CREB3:-1.34058180759;PAX2:-1.34467609204;PRDM1:-1.40512758208;TBX4,5:-1.43184876545;NRF1:-1.4443316565;ELF1,2,4:-1.49603495291;FOXM1:-1.50015644975;BREu{core}:-1.52619763628;TEF:-1.52724943626;RFX2..5_RFXANK_RFXAP:-1.54128102626;HBP1_HMGB_SSRP1_UBTF:-1.55585677734;PITX1..3:-1.57474388405;HOXA9_MEIS1:-1.57751743386;ELK1,4_GABP{A,B1}:-1.68395482003;ARID5B:-1.73004755708;PAX8:-1.83003221202;ZBTB16:-1.83040236019;AIRE:-1.83584714212;FOXD3:-1.90933759379;AHR_ARNT_ARNT2:-1.97212423072;ALX1:-1.98611905177;MYB:-2.00454772097;IKZF2:-2.04894448878;ZNF384:-2.09185517005;PAX6:-2.1476399221;FOXP1:-2.16801347101;POU1F1:-2.19683280904;CDX1,2,4:-2.23603147044;HMGA1,2:-2.3424764962;NKX6-1,2:-2.56838687983;PAX4:-2.57611862589;FOXN1:-2.75607690499;FOX{I1,J2}:-3.4399312689 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11537-120A7;search_select_hide=table117:FF:11537-120A7 | |||
}} | }} |
Latest revision as of 18:07, 4 June 2020
Name: | Mesenchymal Stem Cells - adipose, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11345 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11345
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11345
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.693 |
10 | 10 | 0.467 |
100 | 100 | 0.869 |
101 | 101 | 0.308 |
102 | 102 | 0.788 |
103 | 103 | 0.497 |
104 | 104 | 0.407 |
105 | 105 | 0.135 |
106 | 106 | 0.0642 |
107 | 107 | 0.0653 |
108 | 108 | 0.785 |
109 | 109 | 0.29 |
11 | 11 | 0.198 |
110 | 110 | 0.495 |
111 | 111 | 0.801 |
112 | 112 | 0.954 |
113 | 113 | 0.232 |
114 | 114 | 0.792 |
115 | 115 | 0.496 |
116 | 116 | 0.196 |
117 | 117 | 0.777 |
118 | 118 | 0.679 |
119 | 119 | 0.51 |
12 | 12 | 0.443 |
120 | 120 | 0.639 |
121 | 121 | 0.314 |
122 | 122 | 0.853 |
123 | 123 | 0.0033 |
124 | 124 | 0.62 |
125 | 125 | 0.226 |
126 | 126 | 0.477 |
127 | 127 | 0.722 |
128 | 128 | 0.0319 |
129 | 129 | 0.266 |
13 | 13 | 0.949 |
130 | 130 | 0.0363 |
131 | 131 | 0.653 |
132 | 132 | 0.231 |
133 | 133 | 0.806 |
134 | 134 | 0.52 |
135 | 135 | 0.714 |
136 | 136 | 0.866 |
137 | 137 | 0.0153 |
138 | 138 | 0.198 |
139 | 139 | 0.94 |
14 | 14 | 0.628 |
140 | 140 | 0.0858 |
141 | 141 | 0.224 |
142 | 142 | 0.477 |
143 | 143 | 0.587 |
144 | 144 | 0.292 |
145 | 145 | 0.364 |
146 | 146 | 0.218 |
147 | 147 | 0.139 |
148 | 148 | 0.455 |
149 | 149 | 0.0141 |
15 | 15 | 0.498 |
150 | 150 | 0.277 |
151 | 151 | 0.575 |
152 | 152 | 0.0712 |
153 | 153 | 0.86 |
154 | 154 | 0.133 |
155 | 155 | 0.666 |
156 | 156 | 0.786 |
157 | 157 | 0.0179 |
158 | 158 | 0.209 |
159 | 159 | 0.773 |
16 | 16 | 0.117 |
160 | 160 | 0.0842 |
161 | 161 | 0.354 |
162 | 162 | 0.0718 |
163 | 163 | 0.846 |
164 | 164 | 0.553 |
165 | 165 | 0.0484 |
166 | 166 | 0.642 |
167 | 167 | 0.0178 |
168 | 168 | 0.714 |
169 | 169 | 0.0534 |
17 | 17 | 0.268 |
18 | 18 | 0.478 |
19 | 19 | 0.122 |
2 | 2 | 0.107 |
20 | 20 | 0.366 |
21 | 21 | 0.425 |
22 | 22 | 0.0553 |
23 | 23 | 0.355 |
24 | 24 | 0.814 |
25 | 25 | 0.3 |
26 | 26 | 0.18 |
27 | 27 | 0.28 |
28 | 28 | 0.0654 |
29 | 29 | 0.775 |
3 | 3 | 0.984 |
30 | 30 | 0.0775 |
31 | 31 | 0.224 |
32 | 32 | 1.33862e-6 |
33 | 33 | 0.861 |
34 | 34 | 0.0956 |
35 | 35 | 0.587 |
36 | 36 | 0.304 |
37 | 37 | 0.258 |
38 | 38 | 0.503 |
39 | 39 | 0.464 |
4 | 4 | 0.773 |
40 | 40 | 0.304 |
41 | 41 | 0.27 |
42 | 42 | 0.593 |
43 | 43 | 0.322 |
44 | 44 | 0.854 |
45 | 45 | 0.244 |
46 | 46 | 0.246 |
47 | 47 | 0.62 |
48 | 48 | 0.283 |
49 | 49 | 0.519 |
5 | 5 | 0.571 |
50 | 50 | 0.209 |
51 | 51 | 0.424 |
52 | 52 | 0.251 |
53 | 53 | 0.768 |
54 | 54 | 0.513 |
55 | 55 | 0.283 |
56 | 56 | 0.462 |
57 | 57 | 0.635 |
58 | 58 | 0.655 |
59 | 59 | 0.0455 |
6 | 6 | 0.351 |
60 | 60 | 0.375 |
61 | 61 | 0.608 |
62 | 62 | 0.629 |
63 | 63 | 0.425 |
64 | 64 | 0.382 |
65 | 65 | 0.0483 |
66 | 66 | 0.803 |
67 | 67 | 0.57 |
68 | 68 | 0.0153 |
69 | 69 | 0.197 |
7 | 7 | 0.768 |
70 | 70 | 0.212 |
71 | 71 | 0.279 |
72 | 72 | 0.488 |
73 | 73 | 0.0433 |
74 | 74 | 0.448 |
75 | 75 | 0.913 |
76 | 76 | 0.371 |
77 | 77 | 0.0241 |
78 | 78 | 0.562 |
79 | 79 | 0.593 |
8 | 8 | 0.211 |
80 | 80 | 0.73 |
81 | 81 | 0.442 |
82 | 82 | 0.695 |
83 | 83 | 0.483 |
84 | 84 | 0.447 |
85 | 85 | 0.132 |
86 | 86 | 0.86 |
87 | 87 | 0.0505 |
88 | 88 | 0.467 |
89 | 89 | 0.275 |
9 | 9 | 0.0757 |
90 | 90 | 0.0476 |
91 | 91 | 0.605 |
92 | 92 | 0.695 |
93 | 93 | 0.953 |
94 | 94 | 0.37 |
95 | 95 | 0.295 |
96 | 96 | 0.396 |
97 | 97 | 0.457 |
98 | 98 | 0.344 |
99 | 99 | 0.0447 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11345
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000096 human mesenchymal stem cell of adipose sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)
UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000096 (human mesenchymal stem cell of adipose sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)