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(Created page with "{{f5samples |id=FF:11529-119I8 |name=Lens Epithelial Cells, donor1 |sample_id=11529 |rna_tube_id=119I8 |rna_box=119 |rna_position=I8 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11529-119I8
|DRA_sample_Accession=CAGE@SAMD00004891
|name=Lens Epithelial Cells, donor1
|accession_numbers=CAGE;DRX008319;DRR009191;DRZ000616;DRZ002001;DRZ011966;DRZ013351
|sample_id=11529
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230
|rna_tube_id=119I8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224
|rna_box=119
|rna_position=I8
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC6555
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=eye
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=lens epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.90000
|sample_note=
|profile_hcage=CNhs12342,LSID913,release011,MAPPING
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000255,CL:0000306,CL:0000325,CL:0000548,CL:0002222,CL:0002224,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000019,UBERON:0000020,UBERON:0000033,UBERON:0000047,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000076,UBERON:0000119,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000484,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000965,UBERON:0000970,UBERON:0001032,UBERON:0001048,UBERON:0001062,UBERON:0001444,UBERON:0001456,UBERON:0001801,UBERON:0001803,UBERON:0002050,UBERON:0002104,UBERON:0002532,UBERON:0002546,UBERON:0003073,UBERON:0004121,UBERON:0004456,UBERON:0005085,UBERON:0005389,UBERON:0005423,UBERON:0005426,UBERON:0007625
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000085
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002224;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Lens%2520Epithelial%2520Cells%252c%2520donor1.CNhs12342.11529-119I8.hg38.nobarcode.ctss.bed.gz
|id=FF:11529-119I8
|is_a=EFO:0002091;;FF:0000085
|is_obsolete=
|library_id=CNhs12342
|library_id_phase_based=2:CNhs12342
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11529
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11529
|name=Lens Epithelial Cells, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12342,LSID913,release011,COMPLETED
|profile_rnaseq=
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|rna_box=119
|rna_catalog_number=SC6555
|rna_concentration=0.9
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=I8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119I8
|rna_weight_ug=10
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=lens epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89609121140349e-216!GO:0005737;cytoplasm;3.50760112749079e-193!GO:0043226;organelle;4.59162197699974e-169!GO:0043229;intracellular organelle;7.76123217078544e-169!GO:0043231;intracellular membrane-bound organelle;1.19625507822581e-164!GO:0043227;membrane-bound organelle;2.80792041397786e-164!GO:0044422;organelle part;6.76037217311598e-145!GO:0044446;intracellular organelle part;1.5526992580692e-143!GO:0044444;cytoplasmic part;1.54280637130428e-137!GO:0032991;macromolecular complex;1.7484753401964e-106!GO:0030529;ribonucleoprotein complex;3.04003462535502e-89!GO:0005515;protein binding;1.05245509884469e-78!GO:0044237;cellular metabolic process;3.10033933746177e-76!GO:0044238;primary metabolic process;2.59251205292375e-74!GO:0043233;organelle lumen;5.70948125206792e-74!GO:0031974;membrane-enclosed lumen;5.70948125206792e-74!GO:0005739;mitochondrion;1.60047630762917e-73!GO:0003723;RNA binding;6.32967919822653e-69!GO:0044428;nuclear part;1.10420616335548e-67!GO:0043170;macromolecule metabolic process;4.39528423525545e-63!GO:0005840;ribosome;2.28437759560725e-55!GO:0043234;protein complex;1.16089982808317e-54!GO:0005634;nucleus;6.23424497585326e-54!GO:0006412;translation;1.20179175069305e-53!GO:0016043;cellular component organization and biogenesis;1.60104259793022e-52!GO:0044429;mitochondrial part;5.4842254079073e-51!GO:0031090;organelle membrane;4.58141659167264e-50!GO:0003735;structural constituent of ribosome;1.13954977419049e-48!GO:0009058;biosynthetic process;3.08638881858802e-48!GO:0044249;cellular biosynthetic process;4.28629611187085e-47!GO:0006396;RNA processing;5.67074474854038e-47!GO:0019538;protein metabolic process;7.15804562310286e-47!GO:0031967;organelle envelope;2.45206612525648e-44!GO:0031975;envelope;5.95052657068983e-44!GO:0033036;macromolecule localization;2.87380183892844e-43!GO:0033279;ribosomal subunit;1.05560553811375e-42!GO:0044260;cellular macromolecule metabolic process;1.41255010313282e-42!GO:0015031;protein transport;2.46698310775506e-42!GO:0031981;nuclear lumen;1.32014905930615e-41!GO:0044267;cellular protein metabolic process;2.57032025586226e-41!GO:0005829;cytosol;4.66697163788068e-41!GO:0009059;macromolecule biosynthetic process;8.05718389180336e-41!GO:0008104;protein localization;4.16345152229121e-40!GO:0045184;establishment of protein localization;6.36745621668041e-40!GO:0043228;non-membrane-bound organelle;4.36155317385992e-36!GO:0043232;intracellular non-membrane-bound organelle;4.36155317385992e-36!GO:0046907;intracellular transport;1.82891680998124e-35!GO:0016071;mRNA metabolic process;4.65356074099642e-35!GO:0006996;organelle organization and biogenesis;3.19898959862976e-34!GO:0005740;mitochondrial envelope;3.40791936465288e-33!GO:0008380;RNA splicing;4.29790047585637e-33!GO:0065003;macromolecular complex assembly;1.10152288338323e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.59423068869405e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.71685958336855e-31!GO:0031966;mitochondrial membrane;3.04533458514692e-31!GO:0006397;mRNA processing;2.59039251519419e-30!GO:0019866;organelle inner membrane;2.87628856321549e-30!GO:0022607;cellular component assembly;4.642446072155e-29!GO:0006886;intracellular protein transport;4.9161798484763e-29!GO:0005743;mitochondrial inner membrane;1.81578622769356e-28!GO:0043283;biopolymer metabolic process;3.3653871169454e-28!GO:0010467;gene expression;6.61201792218781e-27!GO:0044445;cytosolic part;2.51162643740242e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.89998441597777e-26!GO:0006259;DNA metabolic process;1.28085766120962e-25!GO:0005681;spliceosome;2.04121474614383e-24!GO:0006119;oxidative phosphorylation;4.09570285747055e-24!GO:0005654;nucleoplasm;6.04237515163275e-24!GO:0016462;pyrophosphatase activity;2.13408295486475e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.65058321491674e-23!GO:0051649;establishment of cellular localization;4.23900946873713e-23!GO:0051641;cellular localization;4.45662800023604e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.27681013192135e-23!GO:0044455;mitochondrial membrane part;2.03832037818979e-22!GO:0017111;nucleoside-triphosphatase activity;3.54521440963311e-22!GO:0015935;small ribosomal subunit;6.61317541883522e-22!GO:0031980;mitochondrial lumen;7.41264344634274e-22!GO:0005759;mitochondrial matrix;7.41264344634274e-22!GO:0015934;large ribosomal subunit;7.61734252210831e-22!GO:0006457;protein folding;1.31520356100655e-21!GO:0000166;nucleotide binding;6.13993547723234e-21!GO:0007049;cell cycle;1.02741158880576e-20!GO:0044451;nucleoplasm part;2.48822291782113e-19!GO:0005783;endoplasmic reticulum;3.37406568389839e-19!GO:0012505;endomembrane system;3.44253891697398e-19!GO:0005746;mitochondrial respiratory chain;1.98149866329289e-18!GO:0005730;nucleolus;4.74256227190389e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.22559866263488e-17!GO:0022618;protein-RNA complex assembly;1.58935940347168e-17!GO:0048770;pigment granule;1.92638075832872e-17!GO:0042470;melanosome;1.92638075832872e-17!GO:0044265;cellular macromolecule catabolic process;9.10128487408219e-17!GO:0000502;proteasome complex (sensu Eukaryota);9.10128487408219e-17!GO:0000278;mitotic cell cycle;9.84067865686178e-17!GO:0044432;endoplasmic reticulum part;1.05561939784791e-16!GO:0005761;mitochondrial ribosome;1.97836448983353e-16!GO:0000313;organellar ribosome;1.97836448983353e-16!GO:0022402;cell cycle process;2.33784937021853e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.3489640643454e-16!GO:0003954;NADH dehydrogenase activity;2.3489640643454e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.3489640643454e-16!GO:0051186;cofactor metabolic process;2.44416793497143e-16!GO:0051082;unfolded protein binding;6.78504948715232e-16!GO:0016874;ligase activity;7.50246443748981e-16!GO:0044248;cellular catabolic process;7.68562166899927e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.87127525826703e-16!GO:0009057;macromolecule catabolic process;1.07353025747506e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.26918648261814e-15!GO:0042775;organelle ATP synthesis coupled electron transport;8.02343905963898e-15!GO:0042773;ATP synthesis coupled electron transport;8.02343905963898e-15!GO:0042254;ribosome biogenesis and assembly;8.42311863746822e-15!GO:0043285;biopolymer catabolic process;8.50310535095901e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.20892165894856e-14!GO:0045271;respiratory chain complex I;1.20892165894856e-14!GO:0005747;mitochondrial respiratory chain complex I;1.20892165894856e-14!GO:0006605;protein targeting;1.32754745048081e-14!GO:0008135;translation factor activity, nucleic acid binding;1.84330843595948e-14!GO:0032553;ribonucleotide binding;3.67422408570676e-14!GO:0032555;purine ribonucleotide binding;3.67422408570676e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.87463337103574e-14!GO:0017076;purine nucleotide binding;4.72052015691767e-14!GO:0008134;transcription factor binding;4.72613555832768e-14!GO:0005794;Golgi apparatus;6.86917101143961e-14!GO:0005694;chromosome;9.52304232200548e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25852492023817e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.1732514475222e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.61002366817327e-13!GO:0000375;RNA splicing, via transesterification reactions;2.61002366817327e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.61002366817327e-13!GO:0019941;modification-dependent protein catabolic process;3.39625087762014e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.39625087762014e-13!GO:0044257;cellular protein catabolic process;4.79042790190138e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.95356076205211e-13!GO:0006512;ubiquitin cycle;5.04976460654075e-13!GO:0006974;response to DNA damage stimulus;6.55622504055295e-13!GO:0009055;electron carrier activity;9.46064428439353e-13!GO:0006732;coenzyme metabolic process;1.28749501730524e-12!GO:0044427;chromosomal part;2.01940295440381e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.12722035432505e-12!GO:0030163;protein catabolic process;5.08533534350615e-12!GO:0005635;nuclear envelope;5.32489446660118e-12!GO:0005789;endoplasmic reticulum membrane;6.88053897050843e-12!GO:0048193;Golgi vesicle transport;7.09961649381553e-12!GO:0000087;M phase of mitotic cell cycle;9.50700635830439e-12!GO:0007067;mitosis;1.1310717406387e-11!GO:0009259;ribonucleotide metabolic process;1.17143252414897e-11!GO:0051276;chromosome organization and biogenesis;1.18816508384778e-11!GO:0022403;cell cycle phase;1.25760996432205e-11!GO:0016887;ATPase activity;1.78158091646136e-11!GO:0044453;nuclear membrane part;2.28431291929631e-11!GO:0005524;ATP binding;2.49558378425613e-11!GO:0003743;translation initiation factor activity;3.18387408976739e-11!GO:0016192;vesicle-mediated transport;3.27859758364232e-11!GO:0032559;adenyl ribonucleotide binding;3.34956153304665e-11!GO:0003676;nucleic acid binding;3.69210974666552e-11!GO:0031965;nuclear membrane;3.80737678876071e-11!GO:0006413;translational initiation;3.87533704804677e-11!GO:0006163;purine nucleotide metabolic process;4.47075802543329e-11!GO:0042623;ATPase activity, coupled;4.96104303975689e-11!GO:0012501;programmed cell death;5.40987990767029e-11!GO:0030554;adenyl nucleotide binding;5.52526016758029e-11!GO:0006281;DNA repair;6.16380220036513e-11!GO:0065004;protein-DNA complex assembly;7.43296673565358e-11!GO:0006915;apoptosis;9.96078148829724e-11!GO:0006399;tRNA metabolic process;1.23545426855745e-10!GO:0009150;purine ribonucleotide metabolic process;1.45015517912195e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.05551229311869e-10!GO:0006446;regulation of translational initiation;2.12087737327604e-10!GO:0009260;ribonucleotide biosynthetic process;2.58775848263115e-10!GO:0006164;purine nucleotide biosynthetic process;2.64679143640307e-10!GO:0005793;ER-Golgi intermediate compartment;2.70372996121361e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.1828460832049e-10!GO:0006333;chromatin assembly or disassembly;4.14745736385042e-10!GO:0006260;DNA replication;4.87644427257069e-10!GO:0000074;regulation of progression through cell cycle;6.4930408111431e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;6.71944558012324e-10!GO:0006364;rRNA processing;7.5869943659607e-10!GO:0051301;cell division;7.76633091478813e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.33195484499797e-10!GO:0051726;regulation of cell cycle;9.50216719922727e-10!GO:0008219;cell death;1.16727360947906e-09!GO:0016265;death;1.16727360947906e-09!GO:0009056;catabolic process;1.25445159095583e-09!GO:0006913;nucleocytoplasmic transport;1.40246375199897e-09!GO:0043412;biopolymer modification;1.46838251521805e-09!GO:0009719;response to endogenous stimulus;1.602540161219e-09!GO:0016072;rRNA metabolic process;1.75734322150032e-09!GO:0009141;nucleoside triphosphate metabolic process;2.0041585588029e-09!GO:0006323;DNA packaging;2.01449837027074e-09!GO:0008565;protein transporter activity;2.26246040631133e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.45531382882916e-09!GO:0016604;nuclear body;2.50541474334472e-09!GO:0005643;nuclear pore;2.51966873741704e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.91021306754884e-09!GO:0051169;nuclear transport;3.29250353265314e-09!GO:0009117;nucleotide metabolic process;3.81699412451914e-09!GO:0048523;negative regulation of cellular process;4.36838842616283e-09!GO:0000785;chromatin;4.38211632278027e-09!GO:0006334;nucleosome assembly;4.62607316071339e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.64289283165543e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.64289283165543e-09!GO:0003712;transcription cofactor activity;5.50427655766973e-09!GO:0030532;small nuclear ribonucleoprotein complex;5.92180679050425e-09!GO:0016491;oxidoreductase activity;5.95680140826347e-09!GO:0003924;GTPase activity;6.45823009940438e-09!GO:0051188;cofactor biosynthetic process;6.45823009940438e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.47803989960074e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.47803989960074e-09!GO:0065002;intracellular protein transport across a membrane;8.88912568447908e-09!GO:0007005;mitochondrion organization and biogenesis;1.10163186223319e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.21387599900252e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.21387599900252e-08!GO:0000279;M phase;1.29656390184443e-08!GO:0006464;protein modification process;1.31330136831938e-08!GO:0015986;ATP synthesis coupled proton transport;1.31330136831938e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31330136831938e-08!GO:0009060;aerobic respiration;1.77388458620634e-08!GO:0051246;regulation of protein metabolic process;2.39859078057914e-08!GO:0006461;protein complex assembly;2.63796733951311e-08!GO:0004386;helicase activity;3.08421248545513e-08!GO:0008026;ATP-dependent helicase activity;3.58850781308102e-08!GO:0031497;chromatin assembly;3.90656635140558e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.46791853424139e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.63242247323272e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.63242247323272e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.63242247323272e-08!GO:0046930;pore complex;5.53938830811263e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.7758101762064e-08!GO:0019829;cation-transporting ATPase activity;5.87321622985506e-08!GO:0046034;ATP metabolic process;6.09133268361656e-08!GO:0045333;cellular respiration;6.09133268361656e-08!GO:0043067;regulation of programmed cell death;6.43011621688238e-08!GO:0043069;negative regulation of programmed cell death;7.3261920333704e-08!GO:0030120;vesicle coat;7.71341040216149e-08!GO:0030662;coated vesicle membrane;7.71341040216149e-08!GO:0017038;protein import;7.8424632422852e-08!GO:0042981;regulation of apoptosis;7.87662394872051e-08!GO:0048519;negative regulation of biological process;8.38667225116991e-08!GO:0043038;amino acid activation;8.39821592007216e-08!GO:0006418;tRNA aminoacylation for protein translation;8.39821592007216e-08!GO:0043039;tRNA aminoacylation;8.39821592007216e-08!GO:0008639;small protein conjugating enzyme activity;9.98262223362241e-08!GO:0043687;post-translational protein modification;1.00501318118441e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.03215373595691e-07!GO:0016607;nuclear speck;1.0552350853369e-07!GO:0006403;RNA localization;1.10866125797064e-07!GO:0050657;nucleic acid transport;1.22945808520655e-07!GO:0051236;establishment of RNA localization;1.22945808520655e-07!GO:0050658;RNA transport;1.22945808520655e-07!GO:0006754;ATP biosynthetic process;1.29987692276432e-07!GO:0006753;nucleoside phosphate metabolic process;1.29987692276432e-07!GO:0043066;negative regulation of apoptosis;1.93640817974446e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.93640817974446e-07!GO:0048475;coated membrane;1.95180765234359e-07!GO:0030117;membrane coat;1.95180765234359e-07!GO:0019787;small conjugating protein ligase activity;1.96083217967787e-07!GO:0004842;ubiquitin-protein ligase activity;2.10300155465324e-07!GO:0016070;RNA metabolic process;2.45564021845268e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.40363379773304e-07!GO:0015630;microtubule cytoskeleton;5.353729835609e-07!GO:0006091;generation of precursor metabolites and energy;5.93327864986831e-07!GO:0005788;endoplasmic reticulum lumen;7.24953496102482e-07!GO:0016787;hydrolase activity;8.83238067154065e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.7484721505347e-07!GO:0006099;tricarboxylic acid cycle;1.02986126584248e-06!GO:0046356;acetyl-CoA catabolic process;1.02986126584248e-06!GO:0045259;proton-transporting ATP synthase complex;1.0610789947852e-06!GO:0016853;isomerase activity;1.104858901309e-06!GO:0009108;coenzyme biosynthetic process;1.21781246889917e-06!GO:0006084;acetyl-CoA metabolic process;1.27745056595601e-06!GO:0016881;acid-amino acid ligase activity;1.59552047653818e-06!GO:0016779;nucleotidyltransferase activity;2.2665304627395e-06!GO:0006916;anti-apoptosis;2.26930799763223e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.42664899952291e-06!GO:0003697;single-stranded DNA binding;2.75685493694768e-06!GO:0005762;mitochondrial large ribosomal subunit;2.89985706997706e-06!GO:0000315;organellar large ribosomal subunit;2.89985706997706e-06!GO:0005768;endosome;3.90180746269851e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.24297674310642e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.50418699322929e-06!GO:0051028;mRNA transport;5.09402431987425e-06!GO:0005667;transcription factor complex;5.38759971786084e-06!GO:0031988;membrane-bound vesicle;5.53659274379297e-06!GO:0032446;protein modification by small protein conjugation;5.58856491741476e-06!GO:0006752;group transfer coenzyme metabolic process;6.5106346683676e-06!GO:0000245;spliceosome assembly;6.51964627108679e-06!GO:0051329;interphase of mitotic cell cycle;6.75545107974014e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.99045438270363e-06!GO:0051187;cofactor catabolic process;7.61893263986579e-06!GO:0016740;transferase activity;7.62980191155795e-06!GO:0009109;coenzyme catabolic process;8.65621813489737e-06!GO:0006366;transcription from RNA polymerase II promoter;8.84637697479961e-06!GO:0016567;protein ubiquitination;1.08853816624194e-05!GO:0051325;interphase;1.10981629532726e-05!GO:0043566;structure-specific DNA binding;1.16765068448565e-05!GO:0004298;threonine endopeptidase activity;1.27021666916683e-05!GO:0006613;cotranslational protein targeting to membrane;1.52116533506787e-05!GO:0009165;nucleotide biosynthetic process;1.60113208658569e-05!GO:0003899;DNA-directed RNA polymerase activity;1.7896220506478e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.7896220506478e-05!GO:0044431;Golgi apparatus part;1.80319901103428e-05!GO:0006793;phosphorus metabolic process;1.96902295087725e-05!GO:0006796;phosphate metabolic process;1.96902295087725e-05!GO:0000151;ubiquitin ligase complex;2.08511957047259e-05!GO:0031410;cytoplasmic vesicle;2.105354031637e-05!GO:0031982;vesicle;2.16311260790319e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.36571157568101e-05!GO:0016126;sterol biosynthetic process;2.40555767338364e-05!GO:0005525;GTP binding;2.47487498623661e-05!GO:0031252;leading edge;2.67313745126611e-05!GO:0031968;organelle outer membrane;2.69069457884674e-05!GO:0005819;spindle;3.10210075384644e-05!GO:0019867;outer membrane;3.2629038628663e-05!GO:0000314;organellar small ribosomal subunit;3.36785125551428e-05!GO:0005763;mitochondrial small ribosomal subunit;3.36785125551428e-05!GO:0030867;rough endoplasmic reticulum membrane;3.71530177082026e-05!GO:0003713;transcription coactivator activity;3.74498737532774e-05!GO:0051427;hormone receptor binding;3.74498737532774e-05!GO:0003724;RNA helicase activity;3.81937466484373e-05!GO:0006695;cholesterol biosynthetic process;3.8339729674502e-05!GO:0051170;nuclear import;4.10880412369673e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.19901838293324e-05!GO:0005798;Golgi-associated vesicle;4.49748937665286e-05!GO:0045454;cell redox homeostasis;4.70047036158462e-05!GO:0045786;negative regulation of progression through cell cycle;4.79006657016863e-05!GO:0016310;phosphorylation;5.10972001211484e-05!GO:0005813;centrosome;5.16139717499128e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.32587289040227e-05!GO:0016859;cis-trans isomerase activity;6.43788518163983e-05!GO:0044262;cellular carbohydrate metabolic process;6.48345547640131e-05!GO:0000786;nucleosome;6.53952646017691e-05!GO:0043623;cellular protein complex assembly;6.55512807140461e-05!GO:0007010;cytoskeleton organization and biogenesis;6.56648390942568e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.82386403200911e-05!GO:0005905;coated pit;7.15746848548163e-05!GO:0043021;ribonucleoprotein binding;7.25331028295242e-05!GO:0035257;nuclear hormone receptor binding;8.07813380690391e-05!GO:0016563;transcription activator activity;8.43056711891971e-05!GO:0005741;mitochondrial outer membrane;8.89148389586953e-05!GO:0005770;late endosome;8.90829088685827e-05!GO:0006606;protein import into nucleus;9.25291310065539e-05!GO:0016568;chromatin modification;9.93614994952942e-05!GO:0031324;negative regulation of cellular metabolic process;0.000123929680788677!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000127974268832035!GO:0001558;regulation of cell growth;0.000131510374369029!GO:0005815;microtubule organizing center;0.000136258253544564!GO:0044440;endosomal part;0.000136693156731448!GO:0010008;endosome membrane;0.000136693156731448!GO:0006839;mitochondrial transport;0.000149206814217914!GO:0008654;phospholipid biosynthetic process;0.000153322647753178!GO:0042802;identical protein binding;0.000155904552346585!GO:0032561;guanyl ribonucleotide binding;0.000155904552346585!GO:0019001;guanyl nucleotide binding;0.000155904552346585!GO:0000075;cell cycle checkpoint;0.000173508801669036!GO:0019899;enzyme binding;0.000174178022433888!GO:0006261;DNA-dependent DNA replication;0.000176916672055799!GO:0019843;rRNA binding;0.000188760025861752!GO:0006414;translational elongation;0.000192388916259143!GO:0048522;positive regulation of cellular process;0.000207982706812611!GO:0007051;spindle organization and biogenesis;0.000209969494987348!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00021347601029548!GO:0016363;nuclear matrix;0.000234392906800521!GO:0048471;perinuclear region of cytoplasm;0.000237635977966284!GO:0033116;ER-Golgi intermediate compartment membrane;0.000245350627981636!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000250111394094034!GO:0015399;primary active transmembrane transporter activity;0.000250111394094034!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000276704778855125!GO:0008361;regulation of cell size;0.000277473110789126!GO:0030036;actin cytoskeleton organization and biogenesis;0.000298716009418951!GO:0005885;Arp2/3 protein complex;0.000309196597602835!GO:0016049;cell growth;0.000341095034498224!GO:0006626;protein targeting to mitochondrion;0.00036445956905171!GO:0008250;oligosaccharyl transferase complex;0.000373001232042727!GO:0003714;transcription corepressor activity;0.000380929941302447!GO:0043681;protein import into mitochondrion;0.000385972644525933!GO:0008033;tRNA processing;0.000396199372941201!GO:0044452;nucleolar part;0.000440779213911352!GO:0016564;transcription repressor activity;0.000443535479145976!GO:0030133;transport vesicle;0.000453850849349234!GO:0051789;response to protein stimulus;0.000485498345262189!GO:0006986;response to unfolded protein;0.000485498345262189!GO:0005773;vacuole;0.000524399537384745!GO:0006612;protein targeting to membrane;0.000546389178574665!GO:0009892;negative regulation of metabolic process;0.000566339455953272!GO:0005791;rough endoplasmic reticulum;0.000570282088731885!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000590862030973939!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000615755607564104!GO:0065009;regulation of a molecular function;0.000705328891168568!GO:0008186;RNA-dependent ATPase activity;0.000711279029844015!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000735265403531999!GO:0004576;oligosaccharyl transferase activity;0.000735280878149627!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000735280878149627!GO:0051920;peroxiredoxin activity;0.000739616531762577!GO:0008610;lipid biosynthetic process;0.000809453141263324!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00083037202805929!GO:0043284;biopolymer biosynthetic process;0.000853392223501008!GO:0018196;peptidyl-asparagine modification;0.000867297168377027!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000867297168377027!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000937517004250144!GO:0016044;membrane organization and biogenesis;0.00102410769705804!GO:0000139;Golgi membrane;0.00108384381256653!GO:0051168;nuclear export;0.00109673540363711!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00111368828004306!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00115457642050685!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00115457642050685!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00115457642050685!GO:0005048;signal sequence binding;0.00117223504002704!GO:0006007;glucose catabolic process;0.00123725922407986!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00127203525360104!GO:0030118;clathrin coat;0.00139502997708872!GO:0005657;replication fork;0.00143684782240325!GO:0031072;heat shock protein binding;0.00148923082165065!GO:0030029;actin filament-based process;0.00153368386896157!GO:0006082;organic acid metabolic process;0.00154088115903839!GO:0003729;mRNA binding;0.00156268773779557!GO:0015992;proton transport;0.00156347983889362!GO:0000059;protein import into nucleus, docking;0.00157519637805868!GO:0030658;transport vesicle membrane;0.00157886855618747!GO:0050794;regulation of cellular process;0.0015853795288623!GO:0048468;cell development;0.00167749540239174!GO:0007006;mitochondrial membrane organization and biogenesis;0.00169238801639858!GO:0019752;carboxylic acid metabolic process;0.00170908414549412!GO:0007093;mitotic cell cycle checkpoint;0.00175866994006627!GO:0000775;chromosome, pericentric region;0.00178146158224848!GO:0006818;hydrogen transport;0.00179748531372331!GO:0004004;ATP-dependent RNA helicase activity;0.00192843440231226!GO:0005769;early endosome;0.00192843440231226!GO:0005684;U2-dependent spliceosome;0.00202893854760326!GO:0008092;cytoskeletal protein binding;0.00216699169303174!GO:0000082;G1/S transition of mitotic cell cycle;0.00219710612025872!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00220328657094117!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00220328657094117!GO:0030132;clathrin coat of coated pit;0.00233120087334916!GO:0008094;DNA-dependent ATPase activity;0.0024496126429496!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0024496126429496!GO:0048500;signal recognition particle;0.00247347198834318!GO:0035258;steroid hormone receptor binding;0.002536623643353!GO:0040008;regulation of growth;0.00260153082179678!GO:0008632;apoptotic program;0.00265359547331035!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0028944468886893!GO:0015002;heme-copper terminal oxidase activity;0.0028944468886893!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0028944468886893!GO:0004129;cytochrome-c oxidase activity;0.0028944468886893!GO:0000323;lytic vacuole;0.00299790759995717!GO:0005764;lysosome;0.00299790759995717!GO:0043492;ATPase activity, coupled to movement of substances;0.00301835418900445!GO:0030119;AP-type membrane coat adaptor complex;0.00309364041319563!GO:0007088;regulation of mitosis;0.00320919187144096!GO:0046483;heterocycle metabolic process;0.00322465727857551!GO:0030663;COPI coated vesicle membrane;0.00329019345957679!GO:0030126;COPI vesicle coat;0.00329019345957679!GO:0051287;NAD binding;0.0033755688885426!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00340737851499604!GO:0051252;regulation of RNA metabolic process;0.00345478210293254!GO:0031543;peptidyl-proline dioxygenase activity;0.00345478210293254!GO:0016272;prefoldin complex;0.00349265766312801!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00353554077674182!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0035811075627787!GO:0006402;mRNA catabolic process;0.00370624830236729!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00372507747324995!GO:0000776;kinetochore;0.0038286103609809!GO:0003684;damaged DNA binding;0.00390184750229392!GO:0007243;protein kinase cascade;0.00390554857604281!GO:0017166;vinculin binding;0.00397943418843457!GO:0030521;androgen receptor signaling pathway;0.0039912584163646!GO:0003682;chromatin binding;0.0041667495844583!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0041916319287599!GO:0030660;Golgi-associated vesicle membrane;0.00422721123257443!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00460027828789333!GO:0006352;transcription initiation;0.00465543713258976!GO:0003678;DNA helicase activity;0.00468066582309567!GO:0050662;coenzyme binding;0.00475653796873774!GO:0030131;clathrin adaptor complex;0.00486286355847783!GO:0006950;response to stress;0.0049205321166604!GO:0006595;polyamine metabolic process;0.0050641051552144!GO:0008312;7S RNA binding;0.00538084095036163!GO:0006979;response to oxidative stress;0.00540903956309307!GO:0022890;inorganic cation transmembrane transporter activity;0.00556177132262634!GO:0006740;NADPH regeneration;0.00566955041470148!GO:0006098;pentose-phosphate shunt;0.00566955041470148!GO:0006778;porphyrin metabolic process;0.00571114842188583!GO:0033013;tetrapyrrole metabolic process;0.00571114842188583!GO:0006417;regulation of translation;0.00571307414469054!GO:0030137;COPI-coated vesicle;0.00578645574639819!GO:0030134;ER to Golgi transport vesicle;0.00578645574639819!GO:0006401;RNA catabolic process;0.00590773294245519!GO:0000049;tRNA binding;0.00592664070753874!GO:0006066;alcohol metabolic process;0.00595738658339425!GO:0030176;integral to endoplasmic reticulum membrane;0.0059781468552491!GO:0030880;RNA polymerase complex;0.00621666225538533!GO:0007050;cell cycle arrest;0.00621733140458336!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00629327380517152!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00629327380517152!GO:0045047;protein targeting to ER;0.00629327380517152!GO:0046474;glycerophospholipid biosynthetic process;0.00632857411357505!GO:0006383;transcription from RNA polymerase III promoter;0.00633296041747646!GO:0019798;procollagen-proline dioxygenase activity;0.00646858687110595!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00657130552548745!GO:0005869;dynactin complex;0.00662545626582791!GO:0048487;beta-tubulin binding;0.00671256114509145!GO:0048518;positive regulation of biological process;0.00686323347681704!GO:0030127;COPII vesicle coat;0.00686323347681704!GO:0012507;ER to Golgi transport vesicle membrane;0.00686323347681704!GO:0046365;monosaccharide catabolic process;0.00712836738774863!GO:0045792;negative regulation of cell size;0.0073846063475765!GO:0051087;chaperone binding;0.00743458707071336!GO:0033673;negative regulation of kinase activity;0.00765953425401753!GO:0006469;negative regulation of protein kinase activity;0.00765953425401753!GO:0030308;negative regulation of cell growth;0.00779557965474519!GO:0030125;clathrin vesicle coat;0.00793434803139259!GO:0030665;clathrin coated vesicle membrane;0.00793434803139259!GO:0006509;membrane protein ectodomain proteolysis;0.0079592883800041!GO:0033619;membrane protein proteolysis;0.0079592883800041!GO:0005996;monosaccharide metabolic process;0.00803215304543215!GO:0006779;porphyrin biosynthetic process;0.00806039142754342!GO:0033014;tetrapyrrole biosynthetic process;0.00806039142754342!GO:0006289;nucleotide-excision repair;0.00806886604689967!GO:0007052;mitotic spindle organization and biogenesis;0.00809732464514575!GO:0031970;organelle envelope lumen;0.00810568573396032!GO:0009116;nucleoside metabolic process;0.00819425655070725!GO:0051348;negative regulation of transferase activity;0.00823554124414653!GO:0001726;ruffle;0.00848264262714201!GO:0006302;double-strand break repair;0.00848264262714201!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00849820495059731!GO:0015631;tubulin binding;0.00854564352455224!GO:0045941;positive regulation of transcription;0.00865784722348602!GO:0046467;membrane lipid biosynthetic process;0.00884360006050542!GO:0019318;hexose metabolic process;0.00902821885821791!GO:0006118;electron transport;0.0092632835591186!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00955263633642581!GO:0008180;signalosome;0.00955542139705549!GO:0045936;negative regulation of phosphate metabolic process;0.00973045847228745!GO:0051270;regulation of cell motility;0.00982838722702462!GO:0050681;androgen receptor binding;0.0101428207035599!GO:0000339;RNA cap binding;0.0101570585568344!GO:0030659;cytoplasmic vesicle membrane;0.0103679264007606!GO:0051052;regulation of DNA metabolic process;0.0103679264007606!GO:0043022;ribosome binding;0.0104164164886919!GO:0032508;DNA duplex unwinding;0.0104164164886919!GO:0032392;DNA geometric change;0.0104164164886919!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106268411350483!GO:0016197;endosome transport;0.0106268411350483!GO:0046164;alcohol catabolic process;0.0108615153038505!GO:0030027;lamellipodium;0.0111315826030701!GO:0005874;microtubule;0.0111315826030701!GO:0043488;regulation of mRNA stability;0.0111315826030701!GO:0043487;regulation of RNA stability;0.0111315826030701!GO:0008022;protein C-terminus binding;0.0111315826030701!GO:0005832;chaperonin-containing T-complex;0.0114204864258383!GO:0005637;nuclear inner membrane;0.0114953389336139!GO:0019320;hexose catabolic process;0.0115292571972155!GO:0006144;purine base metabolic process;0.0116724916888574!GO:0004003;ATP-dependent DNA helicase activity;0.0116724916888574!GO:0051098;regulation of binding;0.0116724916888574!GO:0006520;amino acid metabolic process;0.011709399611116!GO:0007264;small GTPase mediated signal transduction;0.0118747237157573!GO:0016481;negative regulation of transcription;0.0119759540159809!GO:0050790;regulation of catalytic activity;0.0120153964438908!GO:0005862;muscle thin filament tropomyosin;0.0122844963190382!GO:0016125;sterol metabolic process;0.012445558971402!GO:0006220;pyrimidine nucleotide metabolic process;0.0124599228811461!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0129113031497919!GO:0000428;DNA-directed RNA polymerase complex;0.0129113031497919!GO:0008139;nuclear localization sequence binding;0.0134483351380782!GO:0016408;C-acyltransferase activity;0.0137315253085648!GO:0003690;double-stranded DNA binding;0.0138355866415496!GO:0009889;regulation of biosynthetic process;0.0142525179541624!GO:0006611;protein export from nucleus;0.014443842413593!GO:0001666;response to hypoxia;0.0145509824935176!GO:0040011;locomotion;0.0147332035132028!GO:0008047;enzyme activator activity;0.015060090023989!GO:0031529;ruffle organization and biogenesis;0.0150795588636598!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0151397877871419!GO:0000287;magnesium ion binding;0.0156642001344259!GO:0006720;isoprenoid metabolic process;0.0156959837027108!GO:0016860;intramolecular oxidoreductase activity;0.0156959837027108!GO:0016584;nucleosome positioning;0.0162122974803271!GO:0007040;lysosome organization and biogenesis;0.0163411924537893!GO:0051128;regulation of cellular component organization and biogenesis;0.0168693550168562!GO:0031326;regulation of cellular biosynthetic process;0.0170920235845366!GO:0000178;exosome (RNase complex);0.0176099137154385!GO:0042168;heme metabolic process;0.0176474055435954!GO:0046519;sphingoid metabolic process;0.0177173198967565!GO:0051539;4 iron, 4 sulfur cluster binding;0.0178194027301853!GO:0006268;DNA unwinding during replication;0.0186159057789066!GO:0006891;intra-Golgi vesicle-mediated transport;0.0190383434314433!GO:0030032;lamellipodium biogenesis;0.0192670495014224!GO:0051101;regulation of DNA binding;0.0192883436946231!GO:0003711;transcription elongation regulator activity;0.0195358389124266!GO:0005758;mitochondrial intermembrane space;0.019674538225239!GO:0051540;metal cluster binding;0.019674538225239!GO:0051536;iron-sulfur cluster binding;0.019674538225239!GO:0003746;translation elongation factor activity;0.0197493309564719!GO:0050789;regulation of biological process;0.0198232444578302!GO:0040012;regulation of locomotion;0.0199276095148842!GO:0009303;rRNA transcription;0.0200333141795696!GO:0022411;cellular component disassembly;0.0200333141795696!GO:0044433;cytoplasmic vesicle part;0.0201702529485024!GO:0009112;nucleobase metabolic process;0.0205689168102638!GO:0007033;vacuole organization and biogenesis;0.0209478139956801!GO:0048144;fibroblast proliferation;0.0209478139956801!GO:0048145;regulation of fibroblast proliferation;0.0209478139956801!GO:0006405;RNA export from nucleus;0.0210891783446962!GO:0051272;positive regulation of cell motility;0.0210891783446962!GO:0040017;positive regulation of locomotion;0.0210891783446962!GO:0000086;G2/M transition of mitotic cell cycle;0.0215335482237582!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0218574428856594!GO:0016251;general RNA polymerase II transcription factor activity;0.0219277626110805!GO:0016741;transferase activity, transferring one-carbon groups;0.022109041583667!GO:0006096;glycolysis;0.022311608902756!GO:0046489;phosphoinositide biosynthetic process;0.0224015227249539!GO:0022408;negative regulation of cell-cell adhesion;0.0226886423313038!GO:0006733;oxidoreduction coenzyme metabolic process;0.022696346033668!GO:0032906;transforming growth factor-beta2 production;0.0231604165688853!GO:0032909;regulation of transforming growth factor-beta2 production;0.0231604165688853!GO:0009124;nucleoside monophosphate biosynthetic process;0.0237402996829519!GO:0009123;nucleoside monophosphate metabolic process;0.0237402996829519!GO:0007059;chromosome segregation;0.0243242195269672!GO:0042326;negative regulation of phosphorylation;0.0244635382570442!GO:0009451;RNA modification;0.0245141799304881!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0245894972797648!GO:0006376;mRNA splice site selection;0.0245894972797648!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0245894972797648!GO:0000209;protein polyubiquitination;0.0248265552113946!GO:0008168;methyltransferase activity;0.0251630135411173!GO:0006783;heme biosynthetic process;0.0251786037132841!GO:0048037;cofactor binding;0.0258665723335783!GO:0007021;tubulin folding;0.0261370685668663!GO:0004177;aminopeptidase activity;0.0263361912196213!GO:0044275;cellular carbohydrate catabolic process;0.0267481205925059!GO:0031124;mRNA 3'-end processing;0.0269623462903755!GO:0006338;chromatin remodeling;0.0269623462903755!GO:0008652;amino acid biosynthetic process;0.0271684700756332!GO:0007162;negative regulation of cell adhesion;0.0271783674415838!GO:0007346;regulation of progression through mitotic cell cycle;0.0273528510103708!GO:0006739;NADP metabolic process;0.0275334760905184!GO:0006767;water-soluble vitamin metabolic process;0.0280983704719889!GO:0030145;manganese ion binding;0.0290019149987603!GO:0050178;phenylpyruvate tautomerase activity;0.0290782595762657!GO:0048146;positive regulation of fibroblast proliferation;0.0293084976453777!GO:0030031;cell projection biogenesis;0.0294120518491676!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0296624837794746!GO:0031902;late endosome membrane;0.0296624837794746!GO:0005975;carbohydrate metabolic process;0.0306771456597609!GO:0045334;clathrin-coated endocytic vesicle;0.0306838682937964!GO:0008538;proteasome activator activity;0.0310441481570528!GO:0004527;exonuclease activity;0.0313881795255102!GO:0016407;acetyltransferase activity;0.0314882797939236!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0316247755763516!GO:0031575;G1/S transition checkpoint;0.0316346722317853!GO:0050811;GABA receptor binding;0.0316843528331272!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0322542503883156!GO:0010257;NADH dehydrogenase complex assembly;0.0322542503883156!GO:0033108;mitochondrial respiratory chain complex assembly;0.0322542503883156!GO:0008637;apoptotic mitochondrial changes;0.0322542503883156!GO:0030518;steroid hormone receptor signaling pathway;0.032762140590699!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0329376607164932!GO:0022415;viral reproductive process;0.033078760759353!GO:0045926;negative regulation of growth;0.0346892931496005!GO:0000096;sulfur amino acid metabolic process;0.035645288525913!GO:0033559;unsaturated fatty acid metabolic process;0.0357056808756294!GO:0006636;unsaturated fatty acid biosynthetic process;0.0357056808756294!GO:0009967;positive regulation of signal transduction;0.0357268782341577!GO:0043130;ubiquitin binding;0.0357471313057668!GO:0032182;small conjugating protein binding;0.0357471313057668!GO:0007034;vacuolar transport;0.0359386290775489!GO:0043065;positive regulation of apoptosis;0.0360578795519479!GO:0032984;macromolecular complex disassembly;0.0364292460634712!GO:0006672;ceramide metabolic process;0.0366505098902286!GO:0008320;protein transmembrane transporter activity;0.0367243962515932!GO:0005784;translocon complex;0.037575222057301!GO:0006378;mRNA polyadenylation;0.037575222057301!GO:0043624;cellular protein complex disassembly;0.0377130667084247!GO:0006275;regulation of DNA replication;0.0379750125673631!GO:0035267;NuA4 histone acetyltransferase complex;0.0380575663233903!GO:0031418;L-ascorbic acid binding;0.0381789058227315!GO:0005092;GDP-dissociation inhibitor activity;0.0382656526550696!GO:0035035;histone acetyltransferase binding;0.0383278377016003!GO:0046426;negative regulation of JAK-STAT cascade;0.0385511045368727!GO:0012506;vesicle membrane;0.0386576553457881!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0386831308342891!GO:0046128;purine ribonucleoside metabolic process;0.039702321182313!GO:0042278;purine nucleoside metabolic process;0.039702321182313!GO:0031371;ubiquitin conjugating enzyme complex;0.0399116045098328!GO:0006541;glutamine metabolic process;0.0399321296214246!GO:0031625;ubiquitin protein ligase binding;0.0399321296214246!GO:0009161;ribonucleoside monophosphate metabolic process;0.0399321296214246!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0399321296214246!GO:0006769;nicotinamide metabolic process;0.0401357865950799!GO:0006284;base-excision repair;0.0401860220489603!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402861217331038!GO:0000922;spindle pole;0.0404875207240373!GO:0043086;negative regulation of catalytic activity;0.0407166275898591!GO:0006310;DNA recombination;0.0407434861171853!GO:0046870;cadmium ion binding;0.0407693413225886!GO:0051338;regulation of transferase activity;0.0407974818389971!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0416830358681102!GO:0009166;nucleotide catabolic process;0.0416830358681102!GO:0004518;nuclease activity;0.0425738303685529!GO:0022884;macromolecule transmembrane transporter activity;0.0427727347849959!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0427727347849959!GO:0045045;secretory pathway;0.0433555604071283!GO:0043068;positive regulation of programmed cell death;0.0440806803394355!GO:0030911;TPR domain binding;0.0441855356366686!GO:0047485;protein N-terminus binding;0.045688525434307!GO:0005096;GTPase activator activity;0.045688525434307!GO:0005669;transcription factor TFIID complex;0.0458197774041664!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0458197774041664!GO:0030100;regulation of endocytosis;0.0462757187326215!GO:0030508;thiol-disulfide exchange intermediate activity;0.0464781469880673!GO:0043189;H4/H2A histone acetyltransferase complex;0.0467887867467427!GO:0009081;branched chain family amino acid metabolic process;0.0472802312038269!GO:0003756;protein disulfide isomerase activity;0.0472802312038269!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0472802312038269!GO:0051059;NF-kappaB binding;0.0478297109951201!GO:0001953;negative regulation of cell-matrix adhesion;0.0482653701206004!GO:0006807;nitrogen compound metabolic process;0.0486792954661566!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0486877149712966!GO:0006518;peptide metabolic process;0.0487057336151734!GO:0005876;spindle microtubule;0.0489616520939244!GO:0043433;negative regulation of transcription factor activity;0.0494032732871609!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0494032732871609!GO:0045039;protein import into mitochondrial inner membrane;0.0494032732871609!GO:0008203;cholesterol metabolic process;0.0499774350244479
|sample_id=11529
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=eye
|top_motifs=NR3C1:1.86892604564;NR6A1:1.79041354617;PAX1,9:1.48274958819;T:1.4318264671;ZNF384:1.39995102882;ZIC1..3:1.26384909997;CRX:1.22680443898;NKX2-1,4:1.09401054256;FOX{I1,J2}:1.06426260366;GFI1:0.914822154509;PAX4:0.839839713807;EN1,2:0.838406130064;ONECUT1,2:0.793414983459;UFEwm:0.783824033001;TFAP4:0.777171293063;HSF1,2:0.764209134231;SOX2:0.753634424562;TLX1..3_NFIC{dimer}:0.747472573758;HOXA9_MEIS1:0.739025850968;HOX{A5,B5}:0.663664784777;PBX1:0.637780573544;GTF2A1,2:0.608721889462;GFI1B:0.608366872398;KLF4:0.602236738;TBP:0.594466247302;PAX5:0.594371299889;FOXQ1:0.579689932325;HOX{A4,D4}:0.565944047866;NANOG:0.541571117195;SOX17:0.536804747591;POU6F1:0.526593024447;NKX2-3_NKX2-5:0.506158408473;LMO2:0.505168662541;NKX3-2:0.49686897939;HNF4A_NR2F1,2:0.492271317098;ESRRA:0.487545903441;PAX8:0.48312594982;SRF:0.471071718303;ADNP_IRX_SIX_ZHX:0.468727075964;ZBTB6:0.464407173978;PAX6:0.458279768177;TEAD1:0.455964318881;POU5F1:0.453794168484;NFATC1..3:0.414765270032;SPZ1:0.408503086621;FOSL2:0.405045176378;IKZF2:0.401647566419;LHX3,4:0.37899220559;E2F1..5:0.374451889304;SOX{8,9,10}:0.372689794923;AIRE:0.360300272028;TEF:0.314423628761;HMX1:0.311860088468;GZF1:0.292179438064;EVI1:0.279591950059;MYB:0.250260516267;MYBL2:0.245461125494;CDC5L:0.229642532707;NKX6-1,2:0.225336721307;DBP:0.22148219973;GCM1,2:0.218071945137;PAX3,7:0.208328274635;MYOD1:0.202006360319;TFCP2:0.191423754483;NR1H4:0.190856778216;NFIL3:0.188787119992;TP53:0.184660264473;NKX2-2,8:0.181393091548;XCPE1{core}:0.179569559306;ZBTB16:0.174347876268;BACH2:0.162000329995;POU2F1..3:0.158210234802;HAND1,2:0.153859957031;YY1:0.153753714271;HOX{A6,A7,B6,B7}:0.15027540935;ZNF148:0.148622899207;HIF1A:0.146112250091;FOXL1:0.128207086558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.124617100156;RXR{A,B,G}:0.123721140382;LEF1_TCF7_TCF7L1,2:0.117250005638;CDX1,2,4:0.0892963262378;EBF1:0.0809616780684;ALX1:0.0806596806263;TAL1_TCF{3,4,12}:0.0724139513735;AR:0.0695074312321;POU1F1:0.0637672654031;OCT4_SOX2{dimer}:0.0515586620764;NFY{A,B,C}:0.0445869611387;NFE2L2:0.036857885142;STAT2,4,6:0.0311739207284;ARID5B:0.00415254270207;GATA4:-0.0162003203809;FOS_FOS{B,L1}_JUN{B,D}:-0.0205960982077;TFDP1:-0.021216700379;HMGA1,2:-0.0219271777048;RBPJ:-0.0244903072478;NFE2L1:-0.0274433735168;NKX3-1:-0.0344997138382;STAT5{A,B}:-0.0474435963066;GTF2I:-0.05449056013;RFX1:-0.0695811436325;PRRX1,2:-0.0909936272998;HNF1A:-0.092555056908;MTF1:-0.105328774503;NRF1:-0.12017024407;SNAI1..3:-0.133385094953;NFE2:-0.13466918385;NR5A1,2:-0.137014991046;RUNX1..3:-0.143862091098;PRDM1:-0.144135499212;JUN:-0.144246837303;ALX4:-0.150250672127;TOPORS:-0.161471172203;ZEB1:-0.171057567149;VSX1,2:-0.177213976841;GLI1..3:-0.182484573783;ZNF423:-0.205139281956;REST:-0.214261666333;FOXD3:-0.216774161987;POU3F1..4:-0.239837276188;NHLH1,2:-0.244803649562;GATA6:-0.246115858305;ZFP161:-0.249861889759;AHR_ARNT_ARNT2:-0.255933410907;CEBPA,B_DDIT3:-0.256546900551;ZNF143:-0.259305228693;MZF1:-0.265443311123;FOXP3:-0.282171558913;NFIX:-0.283827707605;HIC1:-0.285088267422;DMAP1_NCOR{1,2}_SMARC:-0.295150533923;ELF1,2,4:-0.312133557173;PAX2:-0.31381471994;ETS1,2:-0.317411235918;HLF:-0.322408032803;ZNF238:-0.338566593289;SP1:-0.340081385267;MEF2{A,B,C,D}:-0.347031797662;NFKB1_REL_RELA:-0.368389695882;PITX1..3:-0.376409823447;TFAP2{A,C}:-0.391581379456;PPARG:-0.408453910818;SOX5:-0.41563127325;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.423840221457;MYFfamily:-0.427313563814;CUX2:-0.441489674361;SPI1:-0.475349188591;FOXO1,3,4:-0.476327824542;RORA:-0.47735157386;IRF1,2:-0.483969108036;FOXP1:-0.488228533336;ATF6:-0.496411153315;XBP1:-0.500303449178;RXRA_VDR{dimer}:-0.508875224095;MAFB:-0.510313003535;TGIF1:-0.513317819486;RREB1:-0.515359722029;PATZ1:-0.516533530348;EGR1..3:-0.542327059017;EP300:-0.550431179325;SPIB:-0.550791076471;MAZ:-0.557797281355;MED-1{core}:-0.564305565315;HES1:-0.576862013795;TBX4,5:-0.588745958523;BREu{core}:-0.608334652028;bHLH_family:-0.617578738146;SMAD1..7,9:-0.617654999381;MTE{core}:-0.635121560106;IKZF1:-0.672362340873;ATF2:-0.678818058946;RFX2..5_RFXANK_RFXAP:-0.700813158663;TFAP2B:-0.754123515435;FOX{D1,D2}:-0.768790679378;BPTF:-0.776036089477;ELK1,4_GABP{A,B1}:-0.778354443031;FOX{F1,F2,J1}:-0.785474281916;FOXM1:-0.832876843825;TLX2:-0.84727540548;ESR1:-0.904502561153;FOXA2:-0.946092772001;NANOG{mouse}:-0.947783595774;ATF5_CREB3:-0.952420596793;HBP1_HMGB_SSRP1_UBTF:-0.95360688556;STAT1,3:-0.99315007734;IRF7:-1.00682083117;CREB1:-1.14323306294;PDX1:-1.15751120855;SREBF1,2:-1.19079471453;ATF4:-1.26254767089;FOXN1:-1.49097355588
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11529-119I8;search_select_hide=table117:FF:11529-119I8
}}
}}

Latest revision as of 18:06, 4 June 2020

Name:Lens Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12342
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typelens epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6555
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004891
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12342 CAGE DRX008319 DRR009191
Accession ID Hg19

Library idBAMCTSS
CNhs12342 DRZ000616 DRZ002001
Accession ID Hg38

Library idBAMCTSS
CNhs12342 DRZ011966 DRZ013351
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0286
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.16
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0441
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.184
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.383
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0191
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0563
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.168
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.343
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.547
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.732
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.35
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12342

Jaspar motifP-value
MA0002.20.0359
MA0003.10.572
MA0004.10.625
MA0006.10.405
MA0007.10.493
MA0009.10.791
MA0014.10.544
MA0017.10.0712
MA0018.29.19375e-8
MA0019.10.51
MA0024.10.55
MA0025.10.417
MA0027.10.434
MA0028.10.066
MA0029.10.996
MA0030.11.40029e-4
MA0031.10.00425
MA0035.20.77
MA0038.10.202
MA0039.20.595
MA0040.10.695
MA0041.10.931
MA0042.10.781
MA0043.14.59124e-8
MA0046.10.895
MA0047.20.477
MA0048.10.344
MA0050.11.03245e-6
MA0051.10.0134
MA0052.10.021
MA0055.10.53
MA0057.10.365
MA0058.10.204
MA0059.10.0814
MA0060.10.243
MA0061.10.778
MA0062.21.36915e-5
MA0065.20.0298
MA0066.10.0236
MA0067.10.00134
MA0068.10.235
MA0069.10.657
MA0070.10.967
MA0071.10.115
MA0072.10.867
MA0073.10.576
MA0074.10.552
MA0076.17.39799e-4
MA0077.10.528
MA0078.10.116
MA0079.20.0463
MA0080.26.81541e-6
MA0081.10.00197
MA0083.10.0105
MA0084.10.688
MA0087.10.805
MA0088.10.569
MA0090.10.0523
MA0091.10.787
MA0092.10.28
MA0093.10.455
MA0099.20.00229
MA0100.10.94
MA0101.10.0573
MA0102.20.00656
MA0103.10.436
MA0104.20.516
MA0105.10.0635
MA0106.10.0236
MA0107.10.0237
MA0108.21.33801e-4
MA0111.10.935
MA0112.20.0102
MA0113.10.971
MA0114.10.0674
MA0115.10.732
MA0116.10.0541
MA0117.10.486
MA0119.10.0134
MA0122.10.607
MA0124.10.537
MA0125.10.653
MA0131.10.37
MA0135.10.47
MA0136.12.13807e-6
MA0137.20.0305
MA0138.20.13
MA0139.10.265
MA0140.10.348
MA0141.10.0627
MA0142.10.0149
MA0143.10.00928
MA0144.10.401
MA0145.10.216
MA0146.10.857
MA0147.10.232
MA0148.10.239
MA0149.10.895
MA0150.10.676
MA0152.10.451
MA0153.10.771
MA0154.10.0346
MA0155.10.322
MA0156.12.28296e-4
MA0157.10.207
MA0159.10.476
MA0160.10.783
MA0162.10.04
MA0163.10.0139
MA0164.10.63
MA0258.10.143
MA0259.10.298



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12342

Novel motifP-value
10.286
100.548
1000.309
1010.688
1020.964
1030.209
1040.578
1050.894
1060.201
1070.0468
1080.557
1090.195
110.148
1100.0645
1110.44
1120.85
1130.805
1140.143
1150.478
1160.16
1170.836
1180.65
1190.137
120.546
1200.212
1210.898
1220.975
1230.344
1240.0648
1250.193
1260.449
1270.422
1280.463
1290.0573
130.112
1300.506
1310.0837
1320.636
1330.556
1340.899
1350.841
1360.309
1370.382
1380.326
1390.249
140.827
1400.872
1410.598
1420.449
1430.0815
1440.665
1450.124
1460.358
1470.104
1480.699
1490.392
150.14
1500.416
1510.682
1520.901
1530.893
1540.856
1550.118
1560.61
1570.649
1580.0807
1590.454
160.167
1600.00589
1610.783
1620.0582
1630.467
1640.919
1650.782
1660.653
1670.621
1680.163
1690.0701
170.379
180.45
190.344
20.512
200.358
210.264
220.572
230.155
240.236
250.617
260.327
270.214
280.82
290.473
30.237
300.511
310.639
320.0259
330.513
340.64
350.297
360.493
370.271
380.661
390.442
40.893
400.121
410.851
420.489
430.386
440.203
450.731
460.156
470.227
480.282
490.436
50.438
500.9
510.387
520.734
530.667
540.913
550.936
560.694
570.332
580.805
590.168
60.828
600.715
610.991
620.278
630.185
640.197
650.257
660.25
670.176
680.487
690.0661
70.182
700.134
710.0948
720.871
730.398
740.639
750.876
760.226
770.109
780.486
790.106
80.0138
800.671
810.398
820.662
830.088
840.748
850.305
860.329
870.695
880.854
890.0187
90.478
900.722
910.064
920.611
930.472
940.0952
950.998
960.295
970.6
980.978
990.0147



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12342


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000085 (human lens epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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