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(Created page with "{{f5samples |id=FF:11467-119B9 |name=Preadipocyte - breast, donor1 |sample_id=11467 |rna_tube_id=119B9 |rna_box=119 |rna_position=B9 |sample_cell_lot=lot:BR020399A |sa...")
 
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{{f5samples
{{f5samples
|id=FF:11467-119B9
|DRA_sample_Accession=CAGE@SAMD00004831
|name=Preadipocyte - breast, donor1
|accession_numbers=CAGE;DRX008407;DRR009279;DRZ000704;DRZ002089;DRZ012054;DRZ013439
|sample_id=11467
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|rna_tube_id=119B9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
|rna_box=119
|rna_position=B9
|sample_cell_lot=lot:BR020399A
|sample_cell_catalog=F-BR-F
|sample_company=Zenbio
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=52 years old adult
|sample_tissue=breast
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=52
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.79000
|rna_od260/280=2.04000
|sample_cell_type=preadipocyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=8.60000
|rna_concentration=0.34300
|sample_note=
|profile_hcage=CNhs11052,LSID722,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10005,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002580
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000310,UBERON:0000465,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000915,UBERON:0001062,UBERON:0001443,UBERON:0002384,UBERON:0005482
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000139
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.20!158.29!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.86!71.95!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.67!51.85!PRRX1;;chr18:53068911..53068935,-!p4@TCF4!1.63!47.14!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.00!ZBED1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.48!29.52!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.45!27.29!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.42!68.48!OSR1;;chr19:47523058..47523114,+!p1@NPAS1!1.34!21.09!NPAS1;;chr14:62162258..62162269,+!p2@HIF1A!1.26!162.51!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.26!88.57!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.33!PRRX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!63.02!TSC22D3;;chr8:72756637..72756664,-!p3@MSC!1.25!19.10!MSC;;chr12:54402790..54402805,+!p2@HOXC8!1.22!15.63!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.21!15.13!HOXC9;;chr1:170633262..170633285,+!p3@PRRX1!1.20!17.12!PRRX1;;chr1:23885981..23886002,-!p1@ID3!1.18!2436.67!ID3;;chr8:25902876..25902936,-!p1@EBF2!1.18!14.14!EBF2;;chr12:54402729..54402743,+!p3@HOXC8!1.17!13.89!HOXC8;;chr1:170633058..170633084,+!p5@PRRX1!1.16!13.40!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!1.14!80.88!SNAI2;;chr2:119605214..119605230,-!p1@EN1!1.14!12.90!EN1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.65!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!63.52!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.32!FOXD1;;chr19:50432453..50432468,+!p1@ATF5!1.11!656.00!ATF5;;chr8:72756667..72756736,-!p2@MSC!1.11!18.61!MSC;;chr10:63809013..63809041,+!p3@ARID5B!1.10!64.76!ARID5B;;chr4:174450089..174450153,-!p2@HAND2!1.10!11.66!HAND2;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.86!CREB3L1;;chr2:239756671..239756732,+!p1@TWIST2!1.07!34.98!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.39!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.42!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.42!HOXD8;;chr4:4861385..4861398,+!p1@MSX1!1.05!30.77!MSX1;;chr1:170632477..170632506,+!p6@PRRX1!1.04!9.92!PRRX1;;chr12:54410948..54410992,+!p3@HOXC5!1.04!9.92!HOXC5;;chr2:8822176..8822196,+!p1@ID2!1.03!1375.01!ID2;;chr18:19749386..19749404,+!p2@GATA6!1.03!13.89!GATA6;;chr12:54394309..54394336,+!p2@HOXC9!1.03!9.68!HOXC9;;chr19:13134772..13134822,+!p2@NFIX!1.01!13.89!NFIX;;chr7:27205136..27205164,-!p1@HOXA9!1.00!8.93!HOXA9;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.13!TWIST2;;chr6:144329384..144329405,-!p1@PLAGL1!0.98!101.72!PLAGL1;;chr2:119604456..119604501,-!p2@EN1!0.97!8.44!EN1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.19!PRRX1;;chr15:96874145..96874166,+!p7@NR2F2!0.95!15.38!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.94!10.92!HOXB7;;chr14:95236551..95236576,-!p2@GSC!0.94!7.69!GSC;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.69!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.94!7.69!FOXS1;;chr2:85981027..85981047,+!p8@ATOH8!0.94!7.69!ATOH8;;chr4:111558135..111558198,-!p2@PITX2!0.94!7.69!PITX2;;chr8:72756213..72756243,-!p5@MSC!0.92!9.68!MSC;;chr8:72756267..72756296,-!p4@MSC!0.90!10.42!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.90!10.17!NR2F2;;chr6:28321909..28321965,-!p3@ZNF323!0.90!6.95!ZNF323;;chr7:27192185..27192209,-!p1@HOXA3!0.90!6.95!HOXA3;;chr4:174451370..174451387,-!p1@HAND2!0.89!6.70!HAND2;;chr15:96874244..96874259,+!p5@NR2F2!0.88!16.62!NR2F2;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.20!SHOX2;;chr13:37494275..37494304,-!p2@SMAD9!0.87!6.45!SMAD9;;chr8:49833978..49833996,-!p1@SNAI2!0.86!136.96!SNAI2;;chr10:77161504..77161530,-!p1@ZNF503!0.86!89.07!ZNF503;;chr18:19749541..19749557,+!p1@GATA6!0.86!20.59!GATA6;;chrX:106960221..106960236,-!p3@TSC22D3!0.85!17.62!TSC22D3;;chr7:150946015..150946070,-!p3@SMARCD3!0.85!13.65!SMARCD3;;chr14:62203595..62203676,+!p4@HIF1A!0.85!11.91!HIF1A;;chr12:80085061..80085119,-!p6@PAWR!0.85!9.92!PAWR;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.19!SKIL;;chr8:72756063..72756125,-!p1@MSC!0.84!12.65!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.95!EBF3;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.71!EMX2;;chr12:54447686..54447704,+!p5@HOXC4!0.83!5.71!HOXC4;;chr10:63809077..63809089,+!p5@ARID5B!0.82!12.65!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.89!ARID5B;;chr17:38498594..38498661,+!p2@RARA!0.81!19.60!RARA;;chr12:48298765..48298783,-!p2@VDR!0.81!11.91!VDR;;chr2:85980951..85981004,+!p1@ATOH8!0.81!9.18!ATOH8;;chr14:95236440..95236465,-!p1@GSC!0.81!5.46!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr13:45151259..45151326,-!p2@TSC22D1!0.79!33.49!TSC22D1;;chr6:28321971..28321995,-!p1@ZNF323!0.79!5.21!ZNF323;;chr1:75600067..75600094,+!p2@LHX8!0.79!5.21!LHX8;;chr12:57914286..57914304,-!p1@DDIT3!0.78!201.22!DDIT3;;chr14:75894714..75894733,+!p1@JDP2!0.78!154.57!JDP2;;chr15:96869255..96869291,+!p6@NR2F2!0.78!9.68!NR2F2;;chr5:158526459..158526481,-!p2@EBF1!0.78!6.95!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.78!4.96!IRX2;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr10:114889016..114889037,+!p15@TCF7L2!0.78!4.96!TCF7L2;;chr17:46682321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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002580;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor1.CNhs11052.11467-119B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11467-119B9
|is_a=EFO:0002091;;FF:0000139
|is_obsolete=
|library_id=CNhs11052
|library_id_phase_based=2:CNhs11052
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11467
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11467
|name=Preadipocyte - breast, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11052,LSID722,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_catalog_number=N/A
|rna_concentration=0.343
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.79
|rna_od260/280=2.04
|rna_position=B9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119B9
|rna_weight_ug=8.6
|sample_age=52
|sample_category=primary cells
|sample_cell_catalog=F-BR-F
|sample_cell_line=
|sample_cell_lot=lot:BR020399A
|sample_cell_type=preadipocyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Zenbio
|sample_description=
|sample_dev_stage=52 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.45357951177983e-228!GO:0005737;cytoplasm;6.34588084008397e-166!GO:0043231;intracellular membrane-bound organelle;2.44089246041405e-143!GO:0043226;organelle;2.87937355041006e-143!GO:0043227;membrane-bound organelle;2.87937355041006e-143!GO:0043229;intracellular organelle;7.03130308125769e-143!GO:0044444;cytoplasmic part;3.67741430173935e-131!GO:0044422;organelle part;2.46797004924068e-103!GO:0044446;intracellular organelle part;5.80454154384823e-102!GO:0032991;macromolecular complex;9.94618075501168e-71!GO:0005515;protein binding;6.10901158072208e-68!GO:0030529;ribonucleoprotein complex;3.44955715305626e-67!GO:0044238;primary metabolic process;7.4497301708695e-67!GO:0044237;cellular metabolic process;1.08567951230462e-66!GO:0043170;macromolecule metabolic process;2.4490863312029e-59!GO:0005739;mitochondrion;3.81023788171814e-57!GO:0043233;organelle lumen;3.65551806688282e-56!GO:0031974;membrane-enclosed lumen;3.65551806688282e-56!GO:0031090;organelle membrane;6.06783223086158e-51!GO:0044428;nuclear part;2.31614694808874e-49!GO:0003723;RNA binding;4.32099888080385e-48!GO:0019538;protein metabolic process;1.67123870317887e-43!GO:0015031;protein transport;3.88230713007053e-42!GO:0005840;ribosome;1.01371860660098e-41!GO:0033036;macromolecule localization;6.03027986289061e-41!GO:0005634;nucleus;9.11717368802951e-41!GO:0006412;translation;3.48316265584543e-40!GO:0045184;establishment of protein localization;2.54611682629537e-39!GO:0009058;biosynthetic process;7.95895433470003e-39!GO:0008104;protein localization;1.89232612500244e-38!GO:0044429;mitochondrial part;2.44223116165845e-38!GO:0044260;cellular macromolecule metabolic process;2.75295489211086e-38!GO:0044267;cellular protein metabolic process;1.42329196924386e-37!GO:0003735;structural constituent of ribosome;5.4980694681531e-37!GO:0016043;cellular component organization and biogenesis;1.2138236818266e-36!GO:0006396;RNA processing;1.64276146198862e-34!GO:0044249;cellular biosynthetic process;4.33263333507903e-34!GO:0043234;protein complex;5.3771744996047e-34!GO:0005829;cytosol;6.56165195445474e-34!GO:0031967;organelle envelope;6.57182731206561e-34!GO:0031975;envelope;1.5020573068465e-33!GO:0009059;macromolecule biosynthetic process;3.30537969180132e-33!GO:0033279;ribosomal subunit;8.48079427907926e-32!GO:0046907;intracellular transport;8.6608367383111e-32!GO:0031981;nuclear lumen;8.99744097666409e-31!GO:0010467;gene expression;1.47578415797856e-29!GO:0016071;mRNA metabolic process;2.70999262532462e-28!GO:0043283;biopolymer metabolic process;2.89878735124695e-28!GO:0006886;intracellular protein transport;1.23846127308033e-27!GO:0008380;RNA splicing;1.17129228701167e-26!GO:0005740;mitochondrial envelope;5.51015751699843e-26!GO:0031966;mitochondrial membrane;1.05170683927216e-24!GO:0006397;mRNA processing;1.71767074787147e-24!GO:0005783;endoplasmic reticulum;5.33275709913324e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.86038719906144e-23!GO:0019866;organelle inner membrane;2.39655089422139e-23!GO:0005743;mitochondrial inner membrane;9.83132065310115e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.36485419135781e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.27760916903103e-22!GO:0012505;endomembrane system;2.38785895898446e-21!GO:0065003;macromolecular complex assembly;5.70723851470378e-21!GO:0006119;oxidative phosphorylation;7.77287052490893e-21!GO:0006457;protein folding;3.95378563162361e-20!GO:0022607;cellular component assembly;1.97828507521436e-19!GO:0044432;endoplasmic reticulum part;3.057815877262e-19!GO:0005654;nucleoplasm;3.1296162430789e-19!GO:0044455;mitochondrial membrane part;5.30099143282686e-19!GO:0005681;spliceosome;6.03543040656429e-19!GO:0051641;cellular localization;8.38022101179955e-19!GO:0051649;establishment of cellular localization;8.83517692741636e-19!GO:0044445;cytosolic part;2.8703855074452e-18!GO:0005794;Golgi apparatus;4.18735851769249e-18!GO:0048770;pigment granule;5.61104259966832e-18!GO:0042470;melanosome;5.61104259966832e-18!GO:0015934;large ribosomal subunit;9.69141988636577e-17!GO:0048193;Golgi vesicle transport;2.4012453191317e-16!GO:0044451;nucleoplasm part;6.06870516787505e-16!GO:0008134;transcription factor binding;6.40577525308321e-16!GO:0015935;small ribosomal subunit;7.95896733898257e-16!GO:0006996;organelle organization and biogenesis;9.13066899621823e-16!GO:0016874;ligase activity;1.26088194503202e-15!GO:0006512;ubiquitin cycle;1.64443356736497e-15!GO:0051186;cofactor metabolic process;2.34582081066112e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.634965989599e-15!GO:0016462;pyrophosphatase activity;4.33298355191981e-15!GO:0005746;mitochondrial respiratory chain;4.60166252389532e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;5.18150325478825e-15!GO:0031980;mitochondrial lumen;5.27893367725003e-15!GO:0005759;mitochondrial matrix;5.27893367725003e-15!GO:0022618;protein-RNA complex assembly;1.25580686857083e-14!GO:0017111;nucleoside-triphosphatase activity;1.96593482548887e-14!GO:0051082;unfolded protein binding;2.79627704733196e-14!GO:0043228;non-membrane-bound organelle;7.81489817078706e-14!GO:0043232;intracellular non-membrane-bound organelle;7.81489817078706e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.9546098877093e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.00961135818308e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53331716347419e-13!GO:0016192;vesicle-mediated transport;1.75409529842497e-13!GO:0006605;protein targeting;1.92331603222585e-13!GO:0019941;modification-dependent protein catabolic process;2.04315646123641e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.04315646123641e-13!GO:0044257;cellular protein catabolic process;2.17466786372178e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.57439819912489e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.92221957049603e-13!GO:0003954;NADH dehydrogenase activity;3.92221957049603e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.92221957049603e-13!GO:0000166;nucleotide binding;4.15983191094867e-13!GO:0005789;endoplasmic reticulum membrane;5.20069240300063e-13!GO:0005730;nucleolus;5.7676349149245e-13!GO:0043285;biopolymer catabolic process;6.44149351828207e-13!GO:0044265;cellular macromolecule catabolic process;6.5608837451275e-13!GO:0008135;translation factor activity, nucleic acid binding;7.78732828234958e-13!GO:0000502;proteasome complex (sensu Eukaryota);8.3992509273659e-13!GO:0005761;mitochondrial ribosome;1.7602610160095e-12!GO:0000313;organellar ribosome;1.7602610160095e-12!GO:0030163;protein catabolic process;3.74031153097789e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.27749950292024e-12!GO:0006732;coenzyme metabolic process;4.67448860941557e-12!GO:0042775;organelle ATP synthesis coupled electron transport;9.93361873840877e-12!GO:0042773;ATP synthesis coupled electron transport;9.93361873840877e-12!GO:0009057;macromolecule catabolic process;1.1945371268653e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.25627462308634e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.51603490385876e-11!GO:0016070;RNA metabolic process;1.55401505192518e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.58295010347996e-11!GO:0045271;respiratory chain complex I;1.58295010347996e-11!GO:0005747;mitochondrial respiratory chain complex I;1.58295010347996e-11!GO:0005793;ER-Golgi intermediate compartment;3.23061200925083e-11!GO:0044248;cellular catabolic process;3.46572297063563e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.65980655655458e-11!GO:0003676;nucleic acid binding;6.70555897436631e-11!GO:0009055;electron carrier activity;8.18241472732903e-11!GO:0003712;transcription cofactor activity;9.68097140936191e-11!GO:0043412;biopolymer modification;1.71474832994295e-10!GO:0012501;programmed cell death;2.81432099944547e-10!GO:0009259;ribonucleotide metabolic process;4.66786866822114e-10!GO:0006915;apoptosis;6.10618183863402e-10!GO:0003743;translation initiation factor activity;6.21222306004195e-10!GO:0008565;protein transporter activity;1.43950659975029e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.48784541750488e-09!GO:0009150;purine ribonucleotide metabolic process;1.64369463663964e-09!GO:0006413;translational initiation;1.69443685648741e-09!GO:0006464;protein modification process;1.72269451401936e-09!GO:0048523;negative regulation of cellular process;1.82116501527234e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;2.02829448226828e-09!GO:0000375;RNA splicing, via transesterification reactions;2.02829448226828e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.02829448226828e-09!GO:0006163;purine nucleotide metabolic process;2.59462922226661e-09!GO:0008219;cell death;2.59757178525842e-09!GO:0016265;death;2.59757178525842e-09!GO:0006446;regulation of translational initiation;2.64688709972073e-09!GO:0017076;purine nucleotide binding;3.79768594314809e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.04348228685992e-09!GO:0032553;ribonucleotide binding;4.08622299316821e-09!GO:0032555;purine ribonucleotide binding;4.08622299316821e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.26734059268066e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.26734059268066e-09!GO:0006888;ER to Golgi vesicle-mediated transport;5.71675385975154e-09!GO:0006259;DNA metabolic process;6.30853834688102e-09!GO:0005635;nuclear envelope;6.33965364894916e-09!GO:0008639;small protein conjugating enzyme activity;6.62886796115923e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.28542036410525e-09!GO:0009141;nucleoside triphosphate metabolic process;7.91759410674282e-09!GO:0009260;ribonucleotide biosynthetic process;8.40739332506408e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.41607907710998e-09!GO:0004842;ubiquitin-protein ligase activity;1.12892333064391e-08!GO:0031965;nuclear membrane;1.20083573869315e-08!GO:0019787;small conjugating protein ligase activity;1.22756433103617e-08!GO:0006164;purine nucleotide biosynthetic process;1.41006478572172e-08!GO:0005788;endoplasmic reticulum lumen;1.74362588219241e-08!GO:0015986;ATP synthesis coupled proton transport;1.98264637670972e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.98264637670972e-08!GO:0005768;endosome;2.02494409421522e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.10033896825522e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.10033896825522e-08!GO:0003714;transcription corepressor activity;2.21394909555433e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.76016925313881e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.78593370576737e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.78593370576737e-08!GO:0030120;vesicle coat;3.43240969061612e-08!GO:0030662;coated vesicle membrane;3.43240969061612e-08!GO:0044431;Golgi apparatus part;3.74461846207599e-08!GO:0016604;nuclear body;3.7638460539156e-08!GO:0042254;ribosome biogenesis and assembly;4.01216025005321e-08!GO:0016491;oxidoreductase activity;5.7624954618787e-08!GO:0046034;ATP metabolic process;5.84242382439882e-08!GO:0006913;nucleocytoplasmic transport;5.91565248622278e-08!GO:0009060;aerobic respiration;8.27305626144169e-08!GO:0005773;vacuole;9.77514712914423e-08!GO:0051169;nuclear transport;9.91769166300678e-08!GO:0048519;negative regulation of biological process;1.09175711998444e-07!GO:0051188;cofactor biosynthetic process;1.11363964115259e-07!GO:0006461;protein complex assembly;1.12281294389745e-07!GO:0043687;post-translational protein modification;1.19777845305403e-07!GO:0016881;acid-amino acid ligase activity;1.2663216316145e-07!GO:0048475;coated membrane;1.2693697505855e-07!GO:0030117;membrane coat;1.2693697505855e-07!GO:0045333;cellular respiration;1.62992622604443e-07!GO:0016607;nuclear speck;1.87868507999919e-07!GO:0019829;cation-transporting ATPase activity;1.92468353415037e-07!GO:0006399;tRNA metabolic process;2.14498420788236e-07!GO:0044453;nuclear membrane part;2.14498420788236e-07!GO:0016564;transcription repressor activity;2.37870691699142e-07!GO:0016887;ATPase activity;2.41131358822651e-07!GO:0017038;protein import;2.51319581154698e-07!GO:0006754;ATP biosynthetic process;2.72820984138175e-07!GO:0006753;nucleoside phosphate metabolic process;2.72820984138175e-07!GO:0042623;ATPase activity, coupled;2.9548779539771e-07!GO:0008654;phospholipid biosynthetic process;3.64764284509371e-07!GO:0006366;transcription from RNA polymerase II promoter;4.03214717196667e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.50870062687161e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.50870062687161e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.50870062687161e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.54331632715738e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.58853477591466e-07!GO:0009056;catabolic process;7.94861302503525e-07!GO:0065002;intracellular protein transport across a membrane;8.07878998668039e-07!GO:0043038;amino acid activation;9.73660177602871e-07!GO:0006418;tRNA aminoacylation for protein translation;9.73660177602871e-07!GO:0043039;tRNA aminoacylation;9.73660177602871e-07!GO:0000323;lytic vacuole;1.07867682730076e-06!GO:0005764;lysosome;1.07867682730076e-06!GO:0006974;response to DNA damage stimulus;1.10427726366802e-06!GO:0007005;mitochondrion organization and biogenesis;1.1091572267709e-06!GO:0003924;GTPase activity;1.36919073818973e-06!GO:0005798;Golgi-associated vesicle;1.38644432120289e-06!GO:0005524;ATP binding;1.60873586589338e-06!GO:0043069;negative regulation of programmed cell death;1.76212055374551e-06!GO:0006099;tricarboxylic acid cycle;1.7776769270649e-06!GO:0046356;acetyl-CoA catabolic process;1.7776769270649e-06!GO:0051187;cofactor catabolic process;1.87051720780031e-06!GO:0032559;adenyl ribonucleotide binding;1.9768546526997e-06!GO:0008361;regulation of cell size;2.0368388343537e-06!GO:0051789;response to protein stimulus;2.06007618982217e-06!GO:0006986;response to unfolded protein;2.06007618982217e-06!GO:0030554;adenyl nucleotide binding;2.19457634479931e-06!GO:0009109;coenzyme catabolic process;2.54741316517814e-06!GO:0050794;regulation of cellular process;2.73228727616843e-06!GO:0016049;cell growth;2.81210348189234e-06!GO:0031988;membrane-bound vesicle;2.87676532440551e-06!GO:0044440;endosomal part;3.02138786855843e-06!GO:0010008;endosome membrane;3.02138786855843e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.24261823961147e-06!GO:0043066;negative regulation of apoptosis;3.35783131974162e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.68700421891463e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.11829261321891e-06!GO:0006752;group transfer coenzyme metabolic process;4.55079987480593e-06!GO:0005770;late endosome;4.69396903691186e-06!GO:0016853;isomerase activity;5.09097547041384e-06!GO:0005643;nuclear pore;5.96046235931523e-06!GO:0006084;acetyl-CoA metabolic process;6.32102451102849e-06!GO:0009108;coenzyme biosynthetic process;6.70390643600228e-06!GO:0000139;Golgi membrane;6.79317632787554e-06!GO:0009117;nucleotide metabolic process;9.07919785842675e-06!GO:0008026;ATP-dependent helicase activity;9.61816952919389e-06!GO:0032446;protein modification by small protein conjugation;1.03319375565455e-05!GO:0043067;regulation of programmed cell death;1.07648259659955e-05!GO:0051246;regulation of protein metabolic process;1.0909047673639e-05!GO:0000151;ubiquitin ligase complex;1.26397676621211e-05!GO:0042981;regulation of apoptosis;1.26749512625007e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.33967904663268e-05!GO:0009719;response to endogenous stimulus;1.33981202578364e-05!GO:0016567;protein ubiquitination;1.36295873979516e-05!GO:0045259;proton-transporting ATP synthase complex;1.39282144225929e-05!GO:0007049;cell cycle;1.51871000530001e-05!GO:0031252;leading edge;1.57100764534375e-05!GO:0031982;vesicle;1.60207259130091e-05!GO:0001558;regulation of cell growth;1.69624082033311e-05!GO:0006613;cotranslational protein targeting to membrane;1.69624082033311e-05!GO:0006916;anti-apoptosis;1.75741534584912e-05!GO:0004386;helicase activity;1.93631924629836e-05!GO:0031324;negative regulation of cellular metabolic process;1.99517002562629e-05!GO:0031410;cytoplasmic vesicle;2.11660720111747e-05!GO:0006091;generation of precursor metabolites and energy;2.19237904865595e-05!GO:0046474;glycerophospholipid biosynthetic process;2.30652751253793e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.50997982560152e-05!GO:0005791;rough endoplasmic reticulum;3.16697310053111e-05!GO:0005667;transcription factor complex;3.18414893576186e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.22033954064736e-05!GO:0005525;GTP binding;3.23141594366969e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.4885023434277e-05!GO:0045454;cell redox homeostasis;3.5378879565328e-05!GO:0045786;negative regulation of progression through cell cycle;3.64832787428793e-05!GO:0046930;pore complex;3.73278837939276e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.74620555785392e-05!GO:0006281;DNA repair;3.81234305854236e-05!GO:0030133;transport vesicle;4.50948824024248e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.53188289303519e-05!GO:0016787;hydrolase activity;5.54363449231385e-05!GO:0016859;cis-trans isomerase activity;6.65436456358517e-05!GO:0005905;coated pit;6.80183254886026e-05!GO:0030867;rough endoplasmic reticulum membrane;6.80183254886026e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.08513419358493e-05!GO:0006364;rRNA processing;7.50421765022104e-05!GO:0051170;nuclear import;7.58941278048678e-05!GO:0006403;RNA localization;8.07598225822247e-05!GO:0019867;outer membrane;8.36452866855827e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.66531836166518e-05!GO:0050657;nucleic acid transport;9.23567916198599e-05!GO:0051236;establishment of RNA localization;9.23567916198599e-05!GO:0050658;RNA transport;9.23567916198599e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.56873661173297e-05!GO:0006606;protein import into nucleus;0.000103414513236172!GO:0016072;rRNA metabolic process;0.000105780254116199!GO:0000245;spliceosome assembly;0.00010901081458644!GO:0005762;mitochondrial large ribosomal subunit;0.000113281653162711!GO:0000315;organellar large ribosomal subunit;0.000113281653162711!GO:0050789;regulation of biological process;0.000113504271398487!GO:0003724;RNA helicase activity;0.000127035640823242!GO:0051726;regulation of cell cycle;0.000140306560417039!GO:0033116;ER-Golgi intermediate compartment membrane;0.000144589100856025!GO:0008610;lipid biosynthetic process;0.000148834249498244!GO:0031968;organelle outer membrane;0.00015391407505334!GO:0015980;energy derivation by oxidation of organic compounds;0.000158016058055961!GO:0032561;guanyl ribonucleotide binding;0.000158460611072764!GO:0019001;guanyl nucleotide binding;0.000158460611072764!GO:0004298;threonine endopeptidase activity;0.000170069134644918!GO:0000074;regulation of progression through cell cycle;0.000181379129317607!GO:0006612;protein targeting to membrane;0.000186328048879907!GO:0009892;negative regulation of metabolic process;0.000211858657529848!GO:0005048;signal sequence binding;0.000218725291002612!GO:0043566;structure-specific DNA binding;0.000219218471213691!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222827716549738!GO:0007050;cell cycle arrest;0.000225779180343708!GO:0046489;phosphoinositide biosynthetic process;0.000243415161026888!GO:0030663;COPI coated vesicle membrane;0.000250788684945254!GO:0030126;COPI vesicle coat;0.000250788684945254!GO:0043021;ribonucleoprotein binding;0.000330239465911297!GO:0003697;single-stranded DNA binding;0.000333259323643259!GO:0006650;glycerophospholipid metabolic process;0.00034233357080445!GO:0004576;oligosaccharyl transferase activity;0.000346993106551486!GO:0003713;transcription coactivator activity;0.000362479681113124!GO:0030029;actin filament-based process;0.000369593029479772!GO:0008250;oligosaccharyl transferase complex;0.000429128429723254!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0004334533014758!GO:0015399;primary active transmembrane transporter activity;0.0004334533014758!GO:0046467;membrane lipid biosynthetic process;0.0004446848098406!GO:0030137;COPI-coated vesicle;0.000452444229976382!GO:0016044;membrane organization and biogenesis;0.000464600871107703!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000472094864457737!GO:0006891;intra-Golgi vesicle-mediated transport;0.000482607132233207!GO:0005885;Arp2/3 protein complex;0.000504702927750341!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000703823908882088!GO:0006839;mitochondrial transport;0.000827329643694871!GO:0044262;cellular carbohydrate metabolic process;0.000856815797890194!GO:0016563;transcription activator activity;0.000863973767307683!GO:0000314;organellar small ribosomal subunit;0.000865090249100473!GO:0005763;mitochondrial small ribosomal subunit;0.000865090249100473!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000884497695314159!GO:0051427;hormone receptor binding;0.00088746641437888!GO:0005769;early endosome;0.000900776355385589!GO:0051920;peroxiredoxin activity;0.00091301487599824!GO:0016481;negative regulation of transcription;0.000919819517806814!GO:0005741;mitochondrial outer membrane;0.000922695705628429!GO:0006793;phosphorus metabolic process;0.000988652793863453!GO:0006796;phosphate metabolic process;0.000988652793863453!GO:0022402;cell cycle process;0.000990903196944803!GO:0040008;regulation of growth;0.00102411369039287!GO:0018196;peptidyl-asparagine modification;0.00102607945965067!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102607945965067!GO:0016779;nucleotidyltransferase activity;0.00105059160863499!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00105480201301445!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131377587862656!GO:0051028;mRNA transport;0.00133256647210162!GO:0043623;cellular protein complex assembly;0.0014095920428557!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00146718713062049!GO:0008186;RNA-dependent ATPase activity;0.00149370680901921!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00152325632563293!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0015440874124664!GO:0035257;nuclear hormone receptor binding;0.00154504571453592!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00157571071053161!GO:0043681;protein import into mitochondrion;0.00160828111507941!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00171074301288815!GO:0016740;transferase activity;0.00172072466910935!GO:0016310;phosphorylation;0.00187376131816025!GO:0006979;response to oxidative stress;0.00188328814719488!GO:0004177;aminopeptidase activity;0.00189925077736206!GO:0007006;mitochondrial membrane organization and biogenesis;0.00190573450272885!GO:0008092;cytoskeletal protein binding;0.0021161889564018!GO:0006497;protein amino acid lipidation;0.00213884545500694!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0022416304816401!GO:0031072;heat shock protein binding;0.00228936840736855!GO:0030658;transport vesicle membrane;0.00248824903073661!GO:0006643;membrane lipid metabolic process;0.00250636718092994!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00257520713442848!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00263618329875172!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00263618329875172!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00263618329875172!GO:0007243;protein kinase cascade;0.0026585583811155!GO:0006626;protein targeting to mitochondrion;0.00269083432412576!GO:0043284;biopolymer biosynthetic process;0.00279658478647509!GO:0016197;endosome transport;0.00287221880265952!GO:0009165;nucleotide biosynthetic process;0.00301498214541254!GO:0048500;signal recognition particle;0.00304227172101001!GO:0006383;transcription from RNA polymerase III promoter;0.00307307512764285!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00307414702783515!GO:0006892;post-Golgi vesicle-mediated transport;0.00310260052756572!GO:0030384;phosphoinositide metabolic process;0.0031256876225746!GO:0016126;sterol biosynthetic process;0.00322408768981733!GO:0005583;fibrillar collagen;0.00335414885586266!GO:0019752;carboxylic acid metabolic process;0.00339639795419236!GO:0019843;rRNA binding;0.00340843294231235!GO:0030134;ER to Golgi transport vesicle;0.00346868118182048!GO:0030659;cytoplasmic vesicle membrane;0.00351624222935727!GO:0030027;lamellipodium;0.00362756874688996!GO:0003899;DNA-directed RNA polymerase activity;0.00362756874688996!GO:0004004;ATP-dependent RNA helicase activity;0.00366208140257674!GO:0043492;ATPase activity, coupled to movement of substances;0.00373081230680526!GO:0043433;negative regulation of transcription factor activity;0.00375193503212236!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00378644376252475!GO:0006082;organic acid metabolic process;0.00383527463363992!GO:0030127;COPII vesicle coat;0.00391936808849605!GO:0012507;ER to Golgi transport vesicle membrane;0.00391936808849605!GO:0030176;integral to endoplasmic reticulum membrane;0.00394403984998796!GO:0006414;translational elongation;0.00405901232193703!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00421735741629968!GO:0005813;centrosome;0.00430236734379967!GO:0045045;secretory pathway;0.00433996696837964!GO:0006506;GPI anchor biosynthetic process;0.00439874460149427!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00446502447148253!GO:0019899;enzyme binding;0.00453394927819815!GO:0042158;lipoprotein biosynthetic process;0.00454041864624163!GO:0048471;perinuclear region of cytoplasm;0.00468875489944557!GO:0048487;beta-tubulin binding;0.0048499836349173!GO:0051087;chaperone binding;0.00489177201953907!GO:0065009;regulation of a molecular function;0.00508533240201712!GO:0051168;nuclear export;0.0051305956054154!GO:0006260;DNA replication;0.00515240637934607!GO:0006509;membrane protein ectodomain proteolysis;0.00515240637934607!GO:0033619;membrane protein proteolysis;0.00515240637934607!GO:0031902;late endosome membrane;0.00516543393417652!GO:0030521;androgen receptor signaling pathway;0.00519180997615714!GO:0006644;phospholipid metabolic process;0.00523462022682511!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0052421755405857!GO:0015992;proton transport;0.0053067111194593!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0054222589546698!GO:0045047;protein targeting to ER;0.0054222589546698!GO:0030118;clathrin coat;0.00558102669926304!GO:0050811;GABA receptor binding;0.00573246396590024!GO:0019222;regulation of metabolic process;0.00573976194716134!GO:0006818;hydrogen transport;0.00586050018258844!GO:0007264;small GTPase mediated signal transduction;0.00599484234294267!GO:0030132;clathrin coat of coated pit;0.00612526520848504!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00614807524287205!GO:0051252;regulation of RNA metabolic process;0.0062149321195549!GO:0005815;microtubule organizing center;0.00627412315751237!GO:0006505;GPI anchor metabolic process;0.00636856265009521!GO:0005581;collagen;0.00645001621531511!GO:0046483;heterocycle metabolic process;0.00652043220703643!GO:0048522;positive regulation of cellular process;0.00669207518131576!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00688661571052534!GO:0030660;Golgi-associated vesicle membrane;0.00699344565236869!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00706412048295838!GO:0015002;heme-copper terminal oxidase activity;0.00706412048295838!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00706412048295838!GO:0004129;cytochrome-c oxidase activity;0.00706412048295838!GO:0003729;mRNA binding;0.00708436239081102!GO:0007034;vacuolar transport;0.00719458976729951!GO:0030880;RNA polymerase complex;0.00720983440920608!GO:0022890;inorganic cation transmembrane transporter activity;0.00729629834375646!GO:0009967;positive regulation of signal transduction;0.00746246926541638!GO:0016568;chromatin modification;0.00779011786126656!GO:0048468;cell development;0.00815134159720128!GO:0007040;lysosome organization and biogenesis;0.00815602391693128!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00836630193859252!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00901592645062797!GO:0005774;vacuolar membrane;0.00904547784021333!GO:0005869;dynactin complex;0.00922229714893708!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00923270893988606!GO:0000049;tRNA binding;0.00926740402837941!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00934676776038937!GO:0003690;double-stranded DNA binding;0.00949902340893264!GO:0008139;nuclear localization sequence binding;0.00967265927571891!GO:0007033;vacuole organization and biogenesis;0.00996102573510843!GO:0006790;sulfur metabolic process;0.010212400097662!GO:0065004;protein-DNA complex assembly;0.0105681678033701!GO:0065007;biological regulation;0.0107101368247999!GO:0045792;negative regulation of cell size;0.0110766126346249!GO:0035258;steroid hormone receptor binding;0.0111869322108494!GO:0016408;C-acyltransferase activity;0.0111869322108494!GO:0003711;transcription elongation regulator activity;0.0115247557190643!GO:0017166;vinculin binding;0.0119294426489339!GO:0003746;translation elongation factor activity;0.0119478780935578!GO:0008312;7S RNA binding;0.0120200149468427!GO:0044433;cytoplasmic vesicle part;0.012175217763442!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0125556039826551!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0125556039826551!GO:0000059;protein import into nucleus, docking;0.0125556039826551!GO:0043488;regulation of mRNA stability;0.0125556039826551!GO:0043487;regulation of RNA stability;0.0125556039826551!GO:0044255;cellular lipid metabolic process;0.012572086480114!GO:0001726;ruffle;0.0129969232911724!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0132182346121466!GO:0030308;negative regulation of cell growth;0.0137479445892445!GO:0051329;interphase of mitotic cell cycle;0.0142917984350837!GO:0051287;NAD binding;0.0142917984350837!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142917984350837!GO:0000428;DNA-directed RNA polymerase complex;0.0142917984350837!GO:0006323;DNA packaging;0.0147119054656153!GO:0000096;sulfur amino acid metabolic process;0.0148692403029168!GO:0008180;signalosome;0.0149618842044301!GO:0016363;nuclear matrix;0.0150303183662765!GO:0016860;intramolecular oxidoreductase activity;0.0151210190535969!GO:0051540;metal cluster binding;0.0151210190535969!GO:0051536;iron-sulfur cluster binding;0.0151210190535969!GO:0001527;microfibril;0.0152041230717894!GO:0006778;porphyrin metabolic process;0.0153519546178955!GO:0033013;tetrapyrrole metabolic process;0.0153519546178955!GO:0005862;muscle thin filament tropomyosin;0.0162054256502771!GO:0006289;nucleotide-excision repair;0.0163328626184019!GO:0030518;steroid hormone receptor signaling pathway;0.0163328626184019!GO:0000339;RNA cap binding;0.0164907902074563!GO:0006695;cholesterol biosynthetic process;0.0172189041974311!GO:0006740;NADPH regeneration;0.0176125830406113!GO:0006098;pentose-phosphate shunt;0.0176125830406113!GO:0050662;coenzyme binding;0.0177305698089941!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0177305698089941!GO:0007021;tubulin folding;0.0177305698089941!GO:0007041;lysosomal transport;0.018180124985368!GO:0051325;interphase;0.0181975720108988!GO:0031901;early endosome membrane;0.0183879698619544!GO:0005595;collagen type XII;0.0183879698619544!GO:0012506;vesicle membrane;0.0183951754491924!GO:0006402;mRNA catabolic process;0.0188521102811653!GO:0050681;androgen receptor binding;0.0190818435205089!GO:0006352;transcription initiation;0.0190818435205089!GO:0005801;cis-Golgi network;0.0191855048723803!GO:0030503;regulation of cell redox homeostasis;0.0191855048723803!GO:0043022;ribosome binding;0.0191855048723803!GO:0016272;prefoldin complex;0.0194245784918506!GO:0005520;insulin-like growth factor binding;0.0200694759594194!GO:0015630;microtubule cytoskeleton;0.0201464895970196!GO:0007030;Golgi organization and biogenesis;0.0205979588216684!GO:0044452;nucleolar part;0.0206412320373086!GO:0006354;RNA elongation;0.020699722757945!GO:0044437;vacuolar part;0.0207521096084511!GO:0031418;L-ascorbic acid binding;0.0210027395359856!GO:0033559;unsaturated fatty acid metabolic process;0.0210027395359856!GO:0006636;unsaturated fatty acid biosynthetic process;0.0210027395359856!GO:0006595;polyamine metabolic process;0.021214876833061!GO:0044420;extracellular matrix part;0.0217308928177831!GO:0007160;cell-matrix adhesion;0.0219369681991378!GO:0000209;protein polyubiquitination;0.0220193802944337!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0220723708059662!GO:0035035;histone acetyltransferase binding;0.0222740598153245!GO:0007010;cytoskeleton organization and biogenesis;0.0229657488697508!GO:0045892;negative regulation of transcription, DNA-dependent;0.0229657488697508!GO:0045936;negative regulation of phosphate metabolic process;0.0234505302788645!GO:0051539;4 iron, 4 sulfur cluster binding;0.0236250060033925!GO:0031589;cell-substrate adhesion;0.0237530637711799!GO:0032940;secretion by cell;0.02397472157591!GO:0033673;negative regulation of kinase activity;0.0240177400272644!GO:0006469;negative regulation of protein kinase activity;0.0240177400272644!GO:0031529;ruffle organization and biogenesis;0.0240287386258879!GO:0006118;electron transport;0.0241988355357616!GO:0046519;sphingoid metabolic process;0.0253168422493722!GO:0015631;tubulin binding;0.0257266856363743!GO:0006984;ER-nuclear signaling pathway;0.0259835464149653!GO:0051128;regulation of cellular component organization and biogenesis;0.026055801485155!GO:0022408;negative regulation of cell-cell adhesion;0.0261135435018746!GO:0031543;peptidyl-proline dioxygenase activity;0.0270452822094381!GO:0030125;clathrin vesicle coat;0.0277625763881097!GO:0030665;clathrin coated vesicle membrane;0.0277625763881097!GO:0008147;structural constituent of bone;0.0283849321338213!GO:0006779;porphyrin biosynthetic process;0.0284874825158967!GO:0033014;tetrapyrrole biosynthetic process;0.0284874825158967!GO:0030041;actin filament polymerization;0.0292065278663567!GO:0008033;tRNA processing;0.0293471460124157!GO:0003779;actin binding;0.0297100690598972!GO:0005586;collagen type III;0.0298129087269359!GO:0008652;amino acid biosynthetic process;0.0298266143907325!GO:0005765;lysosomal membrane;0.0302483785131494!GO:0006749;glutathione metabolic process;0.0304228956686683!GO:0006897;endocytosis;0.0304228956686683!GO:0010324;membrane invagination;0.0304228956686683!GO:0051348;negative regulation of transferase activity;0.0310081162124517!GO:0048144;fibroblast proliferation;0.0312198624714273!GO:0048145;regulation of fibroblast proliferation;0.0312198624714273!GO:0030119;AP-type membrane coat adaptor complex;0.0314514789974966!GO:0042168;heme metabolic process;0.0321494808615832!GO:0005832;chaperonin-containing T-complex;0.0328527011916128!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0340957582325311!GO:0009112;nucleobase metabolic process;0.0341722083998727!GO:0008632;apoptotic program;0.0348774831160927!GO:0030833;regulation of actin filament polymerization;0.0359528072012234!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0363890897550129!GO:0008320;protein transmembrane transporter activity;0.0366219165487328!GO:0044438;microbody part;0.0369387427800499!GO:0044439;peroxisomal part;0.0369387427800499!GO:0030865;cortical cytoskeleton organization and biogenesis;0.037420118629114!GO:0051098;regulation of binding;0.0375657426798535!GO:0001872;zymosan binding;0.0378589952384406!GO:0001878;response to yeast;0.0378589952384406!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394282540506157!GO:0000287;magnesium ion binding;0.0394282540506157!GO:0006672;ceramide metabolic process;0.0395175140525485!GO:0003923;GPI-anchor transamidase activity;0.0401403570739934!GO:0016255;attachment of GPI anchor to protein;0.0401403570739934!GO:0042765;GPI-anchor transamidase complex;0.0401403570739934!GO:0000278;mitotic cell cycle;0.0405300347316747!GO:0006739;NADP metabolic process;0.041060136517465!GO:0008047;enzyme activator activity;0.0416290364271251!GO:0015036;disulfide oxidoreductase activity;0.0419016356939857!GO:0003684;damaged DNA binding;0.042199993234!GO:0031625;ubiquitin protein ligase binding;0.042199993234!GO:0048146;positive regulation of fibroblast proliferation;0.0425515823628503!GO:0000082;G1/S transition of mitotic cell cycle;0.0427545892065975!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0428388366297574!GO:0045926;negative regulation of growth;0.0434209086803808!GO:0005684;U2-dependent spliceosome;0.0435221902729654!GO:0051101;regulation of DNA binding;0.0446211727972378!GO:0019798;procollagen-proline dioxygenase activity;0.0458565320582664!GO:0030508;thiol-disulfide exchange intermediate activity;0.0460291012266648!GO:0006635;fatty acid beta-oxidation;0.0460291012266648!GO:0008234;cysteine-type peptidase activity;0.0460423450770418!GO:0016251;general RNA polymerase II transcription factor activity;0.0460423450770418!GO:0004228;gelatinase A activity;0.0460930078890006!GO:0001955;blood vessel maturation;0.0460930078890006!GO:0001953;negative regulation of cell-matrix adhesion;0.046584446058807!GO:0030032;lamellipodium biogenesis;0.0473686152582094!GO:0045893;positive regulation of transcription, DNA-dependent;0.0475067738707019!GO:0006302;double-strand break repair;0.0484121409936557!GO:0030131;clathrin adaptor complex;0.0484687881808595!GO:0051716;cellular response to stimulus;0.0491026513576129!GO:0031903;microbody membrane;0.0491026513576129!GO:0005778;peroxisomal membrane;0.0491026513576129!GO:0043086;negative regulation of catalytic activity;0.0492824898761505!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0496766591770948!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0496766591770948!GO:0032984;macromolecular complex disassembly;0.0499577360395198
|sample_id=11467
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=breast
|top_motifs=TAL1_TCF{3,4,12}:2.30011083278;ESR1:2.13064480596;FOXL1:2.04688233633;MAFB:1.83541772759;HES1:1.83364961619;HIF1A:1.75590804371;NKX3-1:1.74034517097;EVI1:1.7188530671;XBP1:1.67620552687;GLI1..3:1.62110225193;NKX2-2,8:1.61822564336;UFEwm:1.4717402079;TEAD1:1.46581773686;GZF1:1.44157635792;IKZF1:1.42533079718;TEF:1.41070068418;ATF6:1.38076560952;MYBL2:1.35350515094;NFE2L1:1.34433741389;TP53:1.30409848634;ZNF238:1.23337026981;SPZ1:1.21700912473;HMX1:1.20462048763;TFAP4:1.20392499737;EBF1:1.19452279883;HOX{A4,D4}:1.19210945373;PAX1,9:1.1644392773;FOXA2:1.13703088849;EN1,2:1.11514012812;HOX{A6,A7,B6,B7}:1.09786137983;HOX{A5,B5}:1.05553309236;NFIX:1.0516822186;ALX4:1.0404466824;NANOG{mouse}:1.00786157961;SMAD1..7,9:1.00178608862;ZNF423:0.984223079687;RXRA_VDR{dimer}:0.943366576075;HBP1_HMGB_SSRP1_UBTF:0.933810835039;GCM1,2:0.925525861248;ADNP_IRX_SIX_ZHX:0.922386780606;HMGA1,2:0.891660231001;NR3C1:0.839358963399;HLF:0.827086880273;NKX3-2:0.819671031155;TLX1..3_NFIC{dimer}:0.81532720657;RXR{A,B,G}:0.810031326605;KLF4:0.79333487489;NHLH1,2:0.792342644448;NFATC1..3:0.764625236757;LHX3,4:0.759726964276;MTE{core}:0.756116140944;SRF:0.73098349857;NR6A1:0.705629330751;HAND1,2:0.651229214727;TBX4,5:0.630095927721;TFAP2B:0.624608182529;HSF1,2:0.619258845456;FOXO1,3,4:0.6049451768;PAX5:0.599002475608;MAZ:0.58713224577;HIC1:0.584556915003;GFI1B:0.570844628647;GTF2I:0.545420036737;bHLH_family:0.518831262138;NKX2-1,4:0.4936770375;ZNF148:0.490868271136;SOX17:0.479931487145;FOX{I1,J2}:0.467660490936;TFAP2{A,C}:0.451562033572;MEF2{A,B,C,D}:0.44479204827;TFCP2:0.437673167534;GTF2A1,2:0.384033313546;NFE2L2:0.368739566663;AR:0.354098189822;SOX5:0.336710428395;MYFfamily:0.316633070006;STAT2,4,6:0.299200815046;DBP:0.276661134264;ARID5B:0.249901415387;ZNF384:0.234001096985;TBP:0.225824881476;GATA4:0.16560573351;MZF1:0.164943689521;CEBPA,B_DDIT3:0.160869421382;MTF1:0.156998974215;POU6F1:0.152472588316;PATZ1:0.0975206427427;CDC5L:0.0894561610996;ZIC1..3:0.0685403240323;SREBF1,2:0.0680189777099;TLX2:0.0489085083643;FOX{D1,D2}:0.0348831418846;REST:0.0345114674332;TGIF1:0.00107967198847;AHR_ARNT_ARNT2:-0.000547257064979;PAX8:-0.00774659574681;BACH2:-0.015012547808;PRDM1:-0.0385580879406;T:-0.0444005458151;ELK1,4_GABP{A,B1}:-0.0571965272814;MYB:-0.0613790106189;HNF1A:-0.0671770835804;PAX2:-0.0764021874152;RREB1:-0.0985130513319;ZBTB6:-0.115627995227;FOSL2:-0.118772388983;PAX4:-0.135570573942;EP300:-0.145427230912;AIRE:-0.157565574876;MED-1{core}:-0.168765769352;XCPE1{core}:-0.169320207893;IRF1,2:-0.187470103515;OCT4_SOX2{dimer}:-0.18869837554;STAT5{A,B}:-0.189414295678;STAT1,3:-0.219695166665;FOS_FOS{B,L1}_JUN{B,D}:-0.236681484022;LEF1_TCF7_TCF7L1,2:-0.237587383556;SOX2:-0.257367115565;ZNF143:-0.260026354705;YY1:-0.307948933911;DMAP1_NCOR{1,2}_SMARC:-0.308691183197;NRF1:-0.316363899644;FOXP3:-0.32196893261;NFIL3:-0.323118861806;HNF4A_NR2F1,2:-0.32713811571;PAX6:-0.332414970387;EGR1..3:-0.332503910592;RFX1:-0.338013780198;BPTF:-0.341382585793;RUNX1..3:-0.3612383755;ETS1,2:-0.367929678411;ZBTB16:-0.372960848282;JUN:-0.39548932587;NFE2:-0.399066004229;FOXN1:-0.428552848981;HOXA9_MEIS1:-0.453782184413;CRX:-0.48370278481;ATF2:-0.49770536931;CREB1:-0.498624134122;ATF5_CREB3:-0.500486398088;SPI1:-0.50262300104;VSX1,2:-0.503425262861;FOXM1:-0.517372025891;IKZF2:-0.52401504462;NKX2-3_NKX2-5:-0.53160481101;NR5A1,2:-0.54515854766;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558839055526;FOXD3:-0.562409167311;NKX6-1,2:-0.574523271615;ESRRA:-0.576178428577;ELF1,2,4:-0.587036083886;TOPORS:-0.595075809783;POU3F1..4:-0.595598450695;ZFP161:-0.595793999432;GFI1:-0.597770192806;GATA6:-0.600885467333;NFKB1_REL_RELA:-0.609209537973;FOXQ1:-0.627369339093;CUX2:-0.635031141073;ZEB1:-0.640870802606;PPARG:-0.669669623123;ATF4:-0.69038591637;SPIB:-0.696702759628;PRRX1,2:-0.715632070173;TFDP1:-0.718593075545;NANOG:-0.729428024017;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.730782596868;ONECUT1,2:-0.731190331761;SNAI1..3:-0.760691127783;NR1H4:-0.771199602098;FOX{F1,F2,J1}:-0.787657848441;POU5F1:-0.798940680155;PITX1..3:-0.809321549208;SP1:-0.819104994383;FOXP1:-0.844445629335;IRF7:-0.878392795424;RFX2..5_RFXANK_RFXAP:-0.899107963924;BREu{core}:-0.953509914614;SOX{8,9,10}:-0.99225073022;POU1F1:-0.994725278098;ALX1:-1.10508275849;LMO2:-1.10768367173;MYOD1:-1.13016284653;CDX1,2,4:-1.15691214693;RORA:-1.16758976972;E2F1..5:-1.19749310518;PAX3,7:-1.20897934447;RBPJ:-1.21225001129;PDX1:-1.24707589044;NFY{A,B,C}:-1.35958085044;PBX1:-1.7848191378;POU2F1..3:-2.11863237858
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11467-119B9;search_select_hide=table117:FF:11467-119B9
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Preadipocyte - breast, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11052
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage52 years old adult
sexfemale
age52
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004831
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11052 CAGE DRX008407 DRR009279
Accession ID Hg19

Library idBAMCTSS
CNhs11052 DRZ000704 DRZ002089
Accession ID Hg38

Library idBAMCTSS
CNhs11052 DRZ012054 DRZ013439
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.405
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.927
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0993
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0742
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.271
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.24
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.279
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.242
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.242
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.738
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.981
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0963
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.651
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.612
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.175
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.175
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.299
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.492
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.914
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.51
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.914
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.008
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11052

Jaspar motifP-value
MA0002.20.996
MA0003.10.298
MA0004.10.195
MA0006.10.13
MA0007.10.778
MA0009.10.19
MA0014.10.216
MA0017.10.569
MA0018.21.543e-5
MA0019.10.527
MA0024.12.97593e-9
MA0025.10.00629
MA0027.10.379
MA0028.10.0912
MA0029.10.0712
MA0030.10.495
MA0031.10.698
MA0035.20.15
MA0038.10.00281
MA0039.20.00844
MA0040.10.344
MA0041.10.661
MA0042.10.955
MA0043.14.48644e-4
MA0046.10.341
MA0047.20.859
MA0048.10.563
MA0050.14.82457e-5
MA0051.10.0567
MA0052.10.643
MA0055.10.406
MA0057.10.473
MA0058.10.124
MA0059.10.927
MA0060.13.78831e-14
MA0061.10.0131
MA0062.25.97635e-6
MA0065.20.624
MA0066.10.555
MA0067.10.018
MA0068.10.877
MA0069.10.0144
MA0070.10.828
MA0071.10.88
MA0072.10.614
MA0073.10.807
MA0074.10.95
MA0076.10.0124
MA0077.10.782
MA0078.10.717
MA0079.20.874
MA0080.25.85271e-6
MA0081.10.0129
MA0083.10.314
MA0084.10.141
MA0087.10.406
MA0088.10.706
MA0090.12.59361e-8
MA0091.10.0141
MA0092.10.0284
MA0093.10.181
MA0099.20.0345
MA0100.10.677
MA0101.16.33085e-5
MA0102.20.238
MA0103.15.53641e-4
MA0104.20.0114
MA0105.10.138
MA0106.10.0272
MA0107.11.87241e-4
MA0108.20.532
MA0111.10.63
MA0112.20.00292
MA0113.10.115
MA0114.10.961
MA0115.10.0165
MA0116.10.284
MA0117.10.369
MA0119.10.273
MA0122.10.635
MA0124.10.229
MA0125.10.326
MA0131.10.19
MA0135.10.145
MA0136.12.35121e-7
MA0137.20.415
MA0138.20.344
MA0139.10.705
MA0140.10.896
MA0141.10.867
MA0142.10.259
MA0143.10.275
MA0144.10.844
MA0145.10.129
MA0146.10.86
MA0147.10.0558
MA0148.10.702
MA0149.10.877
MA0150.10.0989
MA0152.16.09427e-4
MA0153.10.937
MA0154.10.602
MA0155.10.289
MA0156.16.17782e-6
MA0157.10.889
MA0159.10.141
MA0160.10.146
MA0162.10.0717
MA0163.10.0431
MA0164.10.274
MA0258.10.37
MA0259.10.294



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11052

Novel motifP-value
10.819
100.512
1000.516
1010.536
1020.0718
1030.597
1040.579
1050.168
1060.149
1070.277
1080.259
1090.586
110.892
1100.967
1110.814
1120.28
1130.107
1140.0394
1150.151
1160.198
1170.603
1180.174
1190.952
120.474
1200.95
1210.651
1220.394
1230.0118
1240.741
1250.854
1260.486
1270.434
1280.559
1290.941
130.622
1300.915
1310.299
1320.467
1330.324
1340.349
1350.526
1360.739
1370.727
1380.395
1390.117
140.202
1400.853
1410.899
1420.645
1430.447
1440.673
1450.642
1460.93
1470.266
1480.841
1495.42627e-5
150.683
1500.53
1510.519
1520.017
1530.0322
1540.944
1550.00213
1560.487
1570.568
1580.0217
1590.414
160.0228
1600.742
1610.501
1620.686
1630.288
1640.564
1650.911
1660.213
1670.579
1680.393
1690.0351
170.5
180.0683
190.0162
20.382
200.321
210.472
220.21
230.0904
240.109
250.474
260.777
270.521
280.233
290.969
30.514
300.528
310.632
323.11035e-14
330.967
340.778
350.771
360.0477
370.111
380.474
390.161
40.874
400.278
410.78
420.629
430.202
440.818
450.774
460.558
470.921
480.943
490.68
50.348
500.905
510.488
520.576
530.106
540.763
550.0361
560.898
570.959
580.308
590.299
60.535
600.678
610.308
620.862
630.587
640.716
650.518
660.329
670.557
680.769
690.582
70.366
700.322
710.183
720.706
730.0125
740.0568
750.679
760.467
770.113
780.349
790.0182
80.459
800.689
810.322
820.143
830.936
840.129
850.0839
860.481
870.213
880.909
890.0941
90.596
900.805
910.814
920.0253
930.713
940.646
950.371
960.238
970.295
980.387
990.0283



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11052


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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