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{{f5samples
{{f5samples
|id=FF:11452-119A3
|DRA_sample_Accession=CAGE@SAMD00005682
|name=Fibroblast - Cardiac, donor4
|accession_numbers=CAGE;DRX008246;DRR009118;DRZ000543;DRZ001928;DRZ011893;DRZ013278
|sample_id=11452
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
|rna_tube_id=119A3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
|rna_box=119
|rna_position=A3
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=2136
|rna_catalog_number=SC6305
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=heart
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.226
|sample_note=
|profile_hcage=CNhs11909,LSID834,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002494,CL:0002548
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003084,UBERON:0003914,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004291,UBERON:0004535,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0007005,UBERON:0007100
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
|comment=
|created_by=tmeehan
|creation_date=2011-06-15T12:34:29Z
|data_phase=2
|datafreeze_phase=2
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|expression_enrichment_score=chr7:35293685..35293718,-!p1@TBX20!1.88!75.62!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.85!70.02!GATA4;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.40!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.97!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.69!126.66!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.57!36.41!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.54!37.97!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.52!31.74!PEG3;;chr1:158975744..158975769,+!p10@IFI16!1.51!31.43!IFI16;;chr8:25902876..25902936,-!p1@EBF2!1.40!24.27!EBF2;;chr6:85474299..85474324,-!p1@TBX18!1.38!40.77!TBX18;;chr1:158969752..158969780,+!p6@IFI16!1.37!38.59!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.34!37.35!ZFP106;;chr18:19749386..19749404,+!p2@GATA6!1.33!28.63!GATA6;;chr3:12330560..12330579,+!p1@PPARG!1.32!23.03!PPARG;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.44!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.30!48.86!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.88!TCF12;;chr14:62162285..62162296,+!p3@HIF1A!1.24!83.09!HIF1A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.25!EBF3;;chr14:62162258..62162269,+!p2@HIF1A!1.19!137.56!HIF1A;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.32!HAND2;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.38!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.16!274.80!SNAI2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.07!SIX2;;chrY:2803415..2803468,+!p1@ZFY!1.15!13.07!ZFY;;chr11:32457075..32457095,-!p1@WT1!1.12!12.14!WT1;;chrY:21906594..21906622,-!p1@KDM5D!1.11!11.83!KDM5D;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.86!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.14!TCF4;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.08!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.20!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.58!PRRX1;;chr1:158985493..158985535,+!p4@IFI16!0.99!13.69!IFI16;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.71!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.97!88.07!SOX9;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.78!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.95!10.27!ZFPM2;;chr9:77112244..77112262,+!p1@RORB!0.95!9.03!RORB;;chr11:113930425..113930471,+!p1@ZBTB16!0.94!11.20!ZBTB16;;chr7:14029283..14029311,-!p1@ETV1!0.93!42.01!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.92!34.54!MEIS2;;chr3:12329397..12329433,+!p2@PPARG!0.91!16.81!PPARG;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.56!C11orf9;;chr8:93074803..93074845,-!p1@RUNX1T1!0.91!7.16!RUNX1T1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.89!6.85!HAND2;;chr9:14314522..14314556,-!p3@NFIB!0.87!15.56!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.86!18.98!NFIA;;chr8:116681409..116681431,-!p2@TRPS1!0.86!18.05!TRPS1;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.22!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.85!943.59!HIF1A;;chr9:14314566..14314618,-!p1@NFIB!0.85!77.49!NFIB;;chr8:116680215..116680245,-!p6@TRPS1!0.85!9.96!TRPS1;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.09!BCL3;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr5:158526459..158526481,-!p2@EBF1!0.84!8.09!EBF1;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.92!ARID5B;;chr7:64023410..64023428,-!p2@ZNF680!0.83!9.34!ZNF680;;chr1:23696448..23696453,-!p5@ZNF436!0.83!7.16!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.81!6.22!ZNF436;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.14!HMGA2;;chr9:14314476..14314487,-!p9@NFIB!0.80!5.29!NFIB;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.81!NFIB;;chr7:19157248..19157268,-!p1@TWIST1!0.78!14.94!TWIST1;;chr2:145277882..145277967,-!p3@ZEB2!0.78!9.03!ZEB2;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.22!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.78!4.98!NKX2-5;;chr8:55370487..55370503,+!p1@SOX17!0.78!4.98!SOX17;;chr8:93074848..93074871,-!p3@RUNX1T1!0.78!4.98!RUNX1T1;;chr19:46800289..46800327,+!p2@HIF3A!0.78!4.98!HIF3A;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.34!PCBP3;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.40!CREB3L1;;chr2:166326200..166326216,+!p1@CSRNP3!0.76!7.16!CSRNP3;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.65!MEIS2;;chr5:178368186..178368238,+!p1@ZNF454!0.75!8.71!ZNF454;;chr1:170632439..170632465,+!p11@PRRX1!0.75!4.67!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.74!495.14!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.74!65.04!NFIA;;chr8:116681123..116681143,-!p4@TRPS1!0.74!9.34!TRPS1;;chr5:92918956..92918969,+!p4@NR2F1!0.74!4.98!NR2F1;;chr7:17338266..17338282,+!p1@AHR!0.73!52.28!AHR;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.63!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.73!10.27!ARID5B;;chr15:96876966..96877017,+!p12@NR2F2!0.73!6.54!NR2F2;;chr18:19749353..19749367,+!p4@GATA6!0.73!4.36!GATA6;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.71!PLAGL1;;chr1:23696308..23696339,-!p2@ZNF436!0.72!9.65!ZNF436;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.60!MEIS2;;chr5:92918894..92918912,+!p2@NR2F1!0.71!14.94!NR2F1;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.32!PBX1;;chr10:63809134..63809145,+!p6@ARID5B!0.71!10.27!ARID5B;;chr3:126076242..126076257,-!p1@KLF15!0.71!5.29!KLF15;;chr2:145277640..145277771,-!p1@ZEB2!0.70!60.69!ZEB2;;chr1:164528410..164528428,+!p1@PBX1!0.70!34.23!PBX1;;chr6:19837592..19837621,+!p1@ID4!0.70!27.39!ID4;;chr10:70320074..70320106,+!p1@TET1!0.70!8.71!TET1;;chr5:92919375..92919438,+!p6@NR2F1!0.70!4.36!NR2F1;;chr7:15726296..15726315,-!p1@MEOX2!0.70!4.05!MEOX2;;chrY:21906761..21906810,-!p2@KDM5D!0.70!4.05!KDM5D;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.05!PKNOX2;;chr12:66218836..66218888,+!p1@HMGA2!0.69!42.01!HMGA2;;chr3:12329358..12329393,+!p3@PPARG!0.69!10.58!PPARG;;chr9:4300050..4300118,-!p1@GLIS3!0.68!28.32!GLIS3;;chr7:19157043..19157088,-!p2@TWIST1!0.68!10.58!TWIST1;;chr11:125034586..125034604,+!p3@PKNOX2!0.68!3.73!PKNOX2;;chr3:169381183..169381205,-!p4@MECOM!0.68!3.73!MECOM;;chr1:164528942..164528964,+!p11@PBX1!0.68!3.73!PBX1;;chr9:4299959..4299974,-!p4@GLIS3!0.67!6.22!GLIS3;;chr13:41240737..41240787,-!p1@FOXO1!0.66!48.86!FOXO1;;chr2:178128149..178128198,-!p2@NFE2L2!0.66!22.10!NFE2L2;;chr12:57504975..57505019,-!p2@STAT6!0.66!16.49!STAT6;;chr9:73029219..73029289,-!p2@KLF9!0.66!12.14!KLF9;;chr3:126076264..126076305,-!p2@KLF15!0.66!5.29!KLF15;;chr20:51588873..51588953,+!p1@TSHZ2!0.66!4.98!TSHZ2;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.76!TWIST2;;chr3:168864315..168864339,-!p2@MECOM!0.65!6.22!MECOM;;chr1:170632115..170632136,+!p9@PRRX1!0.65!3.42!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.65!3.42!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!0.65!3.42!LHX9;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.42!EBF1;;chr8:106331769..106331772,+!p8@ZFPM2!0.65!3.42!ZFPM2;;chr11:125034605..125034636,+!p2@PKNOX2!0.65!3.42!PKNOX2;;chr9:2158443..2158481,+!p2@SMARCA2!0.64!10.89!SMARCA2;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.16!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!5.91!ZBTB16;;chr7:86782094..86782108,+!p5@DMTF1!0.64!5.91!DMTF1;;chr19:13106214..13106382,+!p1@NFIX!0.63!89.94!NFIX;;chrX:128657457..128657475,-!p1@SMARCA1!0.63!45.13!SMARCA1;;chr7:149470641..149470694,-!p1@ZNF467!0.63!17.12!ZNF467;;chr1:8483878..8483907,-!p4@RERE!0.63!14.63!RERE;;chr14:24837368..24837401,+!p1@NFATC4!0.63!8.71!NFATC4;;chr10:64576105..64576133,-!p1@EGR2!0.63!7.47!EGR2;;chr9:16870710..16870763,-!p1@BNC2!0.63!6.22!BNC2;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.58!AEBP1;;chr6:126112074..126112144,+!p1@NCOA7!0.62!50.42!NCOA7;;chr15:96874012..96874042,+!p2@NR2F2!0.62!33.61!NR2F2;;chr3:114343768..114343822,-!p1@ZBTB20!0.62!16.18!ZBTB20;;chr8:57123815..57123867,-!p1@PLAG1!0.62!15.25!PLAG1;;chr15:37392616..37392638,-!p2@MEIS2!0.62!11.51!MEIS2;;chr15:37390374..37390422,-!p9@MEIS2!0.62!4.05!MEIS2;;chr7:14029312..14029325,-!p4@ETV1!0.62!4.05!ETV1;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.10!ARID5B;;chr15:66994561..66994597,+!p2@SMAD6!0.61!8.40!SMAD6;;chr11:47279504..47279563,+!p1@NR1H3!0.61!7.78!NR1H3;;chr5:92918860..92918871,+!p10@NR2F1!0.61!3.42!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.11!NR2F1;;chr7:15726243..15726293,-!p2@MEOX2!0.61!3.11!MEOX2;;chr8:116673894..116673913,-!p12@TRPS1!0.61!3.11!TRPS1;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.11!SIX2;;chr21:39870339..39870443,-!p1@ERG!0.61!3.11!ERG;;chr1:61547781..61547809,+!p5@NFIA!0.60!6.85!NFIA;;chr19:13134457..13134462,+!p5@NFIX!0.60!5.91!NFIX;;chr2:239756739..239756755,+!p2@TWIST2!0.60!5.60!TWIST2;;chr3:21792585..21792625,-!p2@ZNF385D!0.60!3.42!ZNF385D;;chr1:61548069..61548102,+!p3@NFIA!0.59!8.09!NFIA;;chr20:45142154..45142227,-!p1@ZNF334!0.59!6.54!ZNF334;;chr16:79633894..79633954,-!p3@MAF!0.59!6.22!MAF;;chr15:37392094..37392116,-!p6@MEIS2!0.59!3.73!MEIS2;;chr13:41240717..41240735,-!p2@FOXO1!0.58!23.03!FOXO1;;chr2:85360499..85360598,+!p1@TCF7L1!0.58!18.98!TCF7L1;;chr3:24536253..24536328,-!p1@THRB!0.58!5.91!THRB;;chr15:66994615..66994630,+!p3@SMAD6!0.58!4.36!SMAD6;;chr15:37392534..37392562,-!p10@MEIS2!0.58!3.11!MEIS2;;chr11:113930401..113930422,+!p3@ZBTB16!0.58!2.80!ZBTB16;;chr6:85474198..85474212,-!p3@TBX18!0.58!2.80!TBX18;;chr7:35293665..35293680,-!p2@TBX20!0.58!2.80!TBX20;;chr13:45151259..45151326,-!p2@TSC22D1!0.57!19.92!TSC22D1;;chr2:85981222..85981259,+!p2@ATOH8!0.57!4.98!ATOH8;;chr15:37390482..37390572,-!p7@MEIS2!0.57!4.05!MEIS2;;chr16:79634624..79634642,-!p1@MAF!0.56!12.45!MAF;;chr12:104531823..104531849,-!p5@NFYB!0.56!6.22!NFYB;;chr18:19749517..19749531,+!p3@GATA6!0.56!5.29!GATA6;;chr15:37392703..37392717,-!p8@MEIS2!0.56!4.05!MEIS2;;chr7:149470540..149470596,-!p2@ZNF467!0.56!3.73!ZNF467;;chr1:158979686..158979745,+!p1@IFI16!0.55!106.75!IFI16;;chr1:158979851..158979865,+!p5@IFI16!0.55!6.54!IFI16;;chr15:96874145..96874166,+!p7@NR2F2!0.55!5.60!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.55!4.05!HMGA2;;chr3:71179699..71179744,-!p2@FOXP1!0.54!23.03!FOXP1;;chr18:22932080..22932170,-!p1@ZNF521!0.54!12.76!ZNF521;;chr17:41622925..41622976,-!p3@ETV4!0.54!4.05!ETV4;;chr1:164528911..164528940,+!p7@PBX1!0.54!4.05!PBX1;;chr19:41536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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=tmeehan
|creation_date=2011-06-15T12:34:29Z
|def="A fibroblast from cardiac tissue." [GOC:tfm]
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000002;;FF:0000059;;FF:0000210
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.ctss.bed.gz
|id=FF:11452-119A3
|is_a=EFO:0002091;;FF:0000059
|is_obsolete=
|library_id=CNhs11909
|library_id_phase_based=2:CNhs11909
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11452
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11452
|name=Fibroblast - Cardiac, donor4
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11909,LSID834,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_catalog_number=SC6305
|rna_concentration=0.226
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2136
|rna_od260/230=
|rna_od260/280=
|rna_position=A3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119A3
|rna_weight_ug=10
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02969244708299e-228!GO:0043226;organelle;4.31029583645084e-181!GO:0005737;cytoplasm;9.26892279919619e-181!GO:0043229;intracellular organelle;9.26892279919619e-181!GO:0043231;intracellular membrane-bound organelle;1.54096195850871e-177!GO:0043227;membrane-bound organelle;2.51457581724038e-177!GO:0044422;organelle part;6.95327754186201e-128!GO:0044446;intracellular organelle part;2.20801320351732e-126!GO:0044444;cytoplasmic part;6.23715668541087e-124!GO:0044238;primary metabolic process;5.116951670088e-84!GO:0005515;protein binding;1.01767127871472e-83!GO:0044237;cellular metabolic process;1.09506282447822e-82!GO:0032991;macromolecular complex;3.73107652208862e-80!GO:0043170;macromolecule metabolic process;7.94933540754367e-76!GO:0005634;nucleus;2.55076848100542e-71!GO:0030529;ribonucleoprotein complex;6.41027909339617e-69!GO:0043233;organelle lumen;2.29879286683226e-67!GO:0031974;membrane-enclosed lumen;2.29879286683226e-67!GO:0044428;nuclear part;1.14857381700907e-65!GO:0003723;RNA binding;1.58641107945711e-65!GO:0005739;mitochondrion;1.03882323277007e-51!GO:0016043;cellular component organization and biogenesis;5.83523980709974e-50!GO:0031090;organelle membrane;5.89553627737299e-48!GO:0019538;protein metabolic process;6.78344592921102e-47!GO:0033036;macromolecule localization;4.75113104537639e-44!GO:0015031;protein transport;2.37638568850827e-43!GO:0043283;biopolymer metabolic process;2.04560818978775e-42!GO:0044260;cellular macromolecule metabolic process;2.73135394522081e-42!GO:0006396;RNA processing;4.39825924037942e-42!GO:0044267;cellular protein metabolic process;3.20967002897695e-41!GO:0043234;protein complex;1.26877055277953e-40!GO:0031981;nuclear lumen;1.80315409964629e-40!GO:0005840;ribosome;2.48947075978113e-40!GO:0008104;protein localization;2.71797590135946e-40!GO:0045184;establishment of protein localization;3.03639702540661e-40!GO:0006412;translation;6.75953597498424e-39!GO:0010467;gene expression;3.94516429633356e-37!GO:0016071;mRNA metabolic process;4.45735567832909e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.61421605263703e-35!GO:0044429;mitochondrial part;6.44784250288619e-35!GO:0003735;structural constituent of ribosome;7.12544245634905e-35!GO:0046907;intracellular transport;7.12544245634905e-35!GO:0031967;organelle envelope;8.59222995511805e-35!GO:0031975;envelope;1.52508158515338e-34!GO:0009058;biosynthetic process;2.36785469530498e-33!GO:0005829;cytosol;5.08651990587259e-33!GO:0008380;RNA splicing;5.64327785186597e-32!GO:0009059;macromolecule biosynthetic process;1.08199095709052e-30!GO:0033279;ribosomal subunit;1.1950951294443e-30!GO:0006397;mRNA processing;1.13290350204651e-29!GO:0006886;intracellular protein transport;1.63586265204047e-29!GO:0065003;macromolecular complex assembly;2.81910920408647e-29!GO:0044249;cellular biosynthetic process;4.45765374254146e-29!GO:0043228;non-membrane-bound organelle;5.00819531461328e-29!GO:0043232;intracellular non-membrane-bound organelle;5.00819531461328e-29!GO:0006996;organelle organization and biogenesis;5.17441051003546e-29!GO:0005654;nucleoplasm;3.74535328335621e-26!GO:0022607;cellular component assembly;5.52855294518102e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.33439804293865e-26!GO:0000166;nucleotide binding;4.97746054866757e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16507777769971e-23!GO:0012505;endomembrane system;6.52046609526585e-23!GO:0005740;mitochondrial envelope;1.66169072116701e-22!GO:0051649;establishment of cellular localization;2.35548936198407e-22!GO:0051641;cellular localization;2.52902224142649e-22!GO:0006259;DNA metabolic process;7.93727078221014e-22!GO:0003676;nucleic acid binding;7.93727078221014e-22!GO:0005681;spliceosome;1.73089028182821e-21!GO:0031966;mitochondrial membrane;2.54569392416873e-21!GO:0044451;nucleoplasm part;3.76445620283795e-21!GO:0005783;endoplasmic reticulum;6.04840847344384e-21!GO:0016462;pyrophosphatase activity;3.17373059611557e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.66210942826277e-20!GO:0019866;organelle inner membrane;5.07453242701392e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;6.1751240714192e-20!GO:0017111;nucleoside-triphosphatase activity;1.2976910231974e-19!GO:0007049;cell cycle;8.47788023816878e-19!GO:0005743;mitochondrial inner membrane;1.60434273428016e-18!GO:0044445;cytosolic part;3.06676621630475e-18!GO:0005794;Golgi apparatus;3.52105149851839e-18!GO:0006457;protein folding;6.68312210987866e-18!GO:0006119;oxidative phosphorylation;1.08721021134218e-17!GO:0044432;endoplasmic reticulum part;1.63355914924087e-17!GO:0048770;pigment granule;3.10663387574996e-17!GO:0042470;melanosome;3.10663387574996e-17!GO:0022618;protein-RNA complex assembly;3.8148009649113e-17!GO:0016070;RNA metabolic process;4.34111788846687e-17!GO:0008134;transcription factor binding;5.07058767293261e-17!GO:0015935;small ribosomal subunit;1.41068050307991e-16!GO:0032553;ribonucleotide binding;1.99372491162598e-16!GO:0032555;purine ribonucleotide binding;1.99372491162598e-16!GO:0017076;purine nucleotide binding;2.1438261755455e-16!GO:0006512;ubiquitin cycle;2.98028913897906e-16!GO:0016874;ligase activity;1.16620975456939e-15!GO:0031980;mitochondrial lumen;1.31897637594893e-15!GO:0005759;mitochondrial matrix;1.31897637594893e-15!GO:0005730;nucleolus;2.09030749247642e-15!GO:0048193;Golgi vesicle transport;2.70054229095643e-15!GO:0044265;cellular macromolecule catabolic process;2.86684500524419e-15!GO:0006605;protein targeting;5.19456709160925e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.8270323311369e-15!GO:0015934;large ribosomal subunit;6.32553421498807e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.10825781876083e-14!GO:0019941;modification-dependent protein catabolic process;1.30292483729962e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.30292483729962e-14!GO:0008135;translation factor activity, nucleic acid binding;1.43723706367396e-14!GO:0044257;cellular protein catabolic process;1.76959898694272e-14!GO:0043285;biopolymer catabolic process;2.53867223063766e-14!GO:0044455;mitochondrial membrane part;2.56901566598885e-14!GO:0016192;vesicle-mediated transport;3.4923234801882e-14!GO:0000278;mitotic cell cycle;1.03692674313255e-13!GO:0043412;biopolymer modification;1.24228516586359e-13!GO:0022402;cell cycle process;1.26885245547207e-13!GO:0051186;cofactor metabolic process;3.23069747084273e-13!GO:0005635;nuclear envelope;5.56864002325531e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.19743790950446e-13!GO:0009057;macromolecule catabolic process;8.08594690812336e-13!GO:0005524;ATP binding;8.41285320683655e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.41285320683655e-13!GO:0032559;adenyl ribonucleotide binding;1.03967100444114e-12!GO:0030163;protein catabolic process;1.37653136505824e-12!GO:0030554;adenyl nucleotide binding;1.50662240809905e-12!GO:0005746;mitochondrial respiratory chain;1.99520906360113e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.23163889091434e-12!GO:0044248;cellular catabolic process;2.30415742420363e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.92104635438172e-12!GO:0005793;ER-Golgi intermediate compartment;3.3391170162058e-12!GO:0006464;protein modification process;3.35402661741191e-12!GO:0016604;nuclear body;4.82849770116504e-12!GO:0031965;nuclear membrane;6.42076547965956e-12!GO:0003743;translation initiation factor activity;6.89268416605901e-12!GO:0051082;unfolded protein binding;8.05230704370108e-12!GO:0006974;response to DNA damage stimulus;1.01138349172284e-11!GO:0005789;endoplasmic reticulum membrane;1.01138349172284e-11!GO:0006413;translational initiation;2.34793543786205e-11!GO:0050136;NADH dehydrogenase (quinone) activity;3.01956785954815e-11!GO:0003954;NADH dehydrogenase activity;3.01956785954815e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.01956785954815e-11!GO:0003712;transcription cofactor activity;3.50717424945273e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.59842419485608e-11!GO:0000375;RNA splicing, via transesterification reactions;3.59842419485608e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.59842419485608e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.2295970163877e-11!GO:0050794;regulation of cellular process;6.76112177098561e-11!GO:0006913;nucleocytoplasmic transport;8.31453491515454e-11!GO:0005761;mitochondrial ribosome;8.38794720354794e-11!GO:0000313;organellar ribosome;8.38794720354794e-11!GO:0043687;post-translational protein modification;8.38794720354794e-11!GO:0051276;chromosome organization and biogenesis;9.62578558217439e-11!GO:0006732;coenzyme metabolic process;1.12751846775014e-10!GO:0008565;protein transporter activity;1.40240902754586e-10!GO:0051169;nuclear transport;1.84003313055478e-10!GO:0044453;nuclear membrane part;1.90663345648685e-10!GO:0006446;regulation of translational initiation;2.24320080227648e-10!GO:0006366;transcription from RNA polymerase II promoter;2.31817612514535e-10!GO:0004386;helicase activity;2.54340125885426e-10!GO:0048523;negative regulation of cellular process;3.24884935807588e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.54489872487464e-10!GO:0042773;ATP synthesis coupled electron transport;3.54489872487464e-10!GO:0016887;ATPase activity;3.55863104472092e-10!GO:0016607;nuclear speck;4.43385657047998e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.66597885380771e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.91110742772875e-10!GO:0045271;respiratory chain complex I;8.91110742772875e-10!GO:0005747;mitochondrial respiratory chain complex I;8.91110742772875e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;8.97918988760022e-10!GO:0000087;M phase of mitotic cell cycle;1.47450591002244e-09!GO:0042254;ribosome biogenesis and assembly;1.71892920964879e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.74149867103979e-09!GO:0042623;ATPase activity, coupled;2.5017000819595e-09!GO:0007067;mitosis;2.5198312187078e-09!GO:0051301;cell division;2.71581687635287e-09!GO:0008639;small protein conjugating enzyme activity;2.73515823890778e-09!GO:0006281;DNA repair;2.73947836445689e-09!GO:0006323;DNA packaging;3.05098522004796e-09!GO:0012501;programmed cell death;3.13041533407283e-09!GO:0005694;chromosome;4.23014924345261e-09!GO:0004842;ubiquitin-protein ligase activity;4.50332456092677e-09!GO:0022403;cell cycle phase;5.4283312739147e-09!GO:0006461;protein complex assembly;5.692203111258e-09!GO:0009719;response to endogenous stimulus;6.0906165781113e-09!GO:0006915;apoptosis;6.34779245098469e-09!GO:0019787;small conjugating protein ligase activity;8.27982365122772e-09!GO:0050789;regulation of biological process;9.86656386465688e-09!GO:0000074;regulation of progression through cell cycle;1.28384327370076e-08!GO:0051726;regulation of cell cycle;1.36659191855366e-08!GO:0048519;negative regulation of biological process;1.3882421199613e-08!GO:0005788;endoplasmic reticulum lumen;1.54966503686196e-08!GO:0008219;cell death;1.80235704926229e-08!GO:0016265;death;1.80235704926229e-08!GO:0008026;ATP-dependent helicase activity;1.82098226038754e-08!GO:0005643;nuclear pore;1.91044183653631e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.02849361021767e-08!GO:0009259;ribonucleotide metabolic process;2.24723456040697e-08!GO:0003924;GTPase activity;2.39680546643377e-08!GO:0006403;RNA localization;2.75704956659361e-08!GO:0017038;protein import;2.79890766458531e-08!GO:0006163;purine nucleotide metabolic process;2.86458269756327e-08!GO:0050657;nucleic acid transport;2.8974018324484e-08!GO:0051236;establishment of RNA localization;2.8974018324484e-08!GO:0050658;RNA transport;2.8974018324484e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.83978046556954e-08!GO:0046930;pore complex;5.11908464016116e-08!GO:0045333;cellular respiration;5.62567083414779e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.73586838775297e-08!GO:0009150;purine ribonucleotide metabolic process;6.06935126885675e-08!GO:0044431;Golgi apparatus part;6.37881395024102e-08!GO:0009060;aerobic respiration;6.76011518813743e-08!GO:0044427;chromosomal part;8.09484228452455e-08!GO:0065002;intracellular protein transport across a membrane;8.41149758959281e-08!GO:0048475;coated membrane;8.57150918390617e-08!GO:0030117;membrane coat;8.57150918390617e-08!GO:0030120;vesicle coat;1.07186882890826e-07!GO:0030662;coated vesicle membrane;1.07186882890826e-07!GO:0009056;catabolic process;1.25229802720531e-07!GO:0016881;acid-amino acid ligase activity;1.36266392269869e-07!GO:0006260;DNA replication;1.451199787329e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46599898610359e-07!GO:0006164;purine nucleotide biosynthetic process;1.87515016436523e-07!GO:0009055;electron carrier activity;2.80920692656755e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.02400054622102e-07!GO:0065004;protein-DNA complex assembly;3.67255689681227e-07!GO:0005768;endosome;3.74108348141384e-07!GO:0009141;nucleoside triphosphate metabolic process;3.79250293769028e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.03284899099116e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.05997617441533e-07!GO:0009260;ribonucleotide biosynthetic process;4.16488713392086e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.35390307363813e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.35390307363813e-07!GO:0043566;structure-specific DNA binding;4.38005934834762e-07!GO:0006399;tRNA metabolic process;4.64358453753563e-07!GO:0051246;regulation of protein metabolic process;5.16682367237463e-07!GO:0015986;ATP synthesis coupled proton transport;5.70998824718222e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.70998824718222e-07!GO:0031252;leading edge;5.90977932215934e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.36930817020348e-07!GO:0015630;microtubule cytoskeleton;8.16796421699429e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.78182175624858e-07!GO:0004812;aminoacyl-tRNA ligase activity;8.78182175624858e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.78182175624858e-07!GO:0031324;negative regulation of cellular metabolic process;1.07492975405641e-06!GO:0000279;M phase;1.08453262332806e-06!GO:0006333;chromatin assembly or disassembly;1.08453262332806e-06!GO:0051028;mRNA transport;1.1256719941364e-06!GO:0043038;amino acid activation;1.35403959812847e-06!GO:0006418;tRNA aminoacylation for protein translation;1.35403959812847e-06!GO:0043039;tRNA aminoacylation;1.35403959812847e-06!GO:0046034;ATP metabolic process;1.35618515003475e-06!GO:0006099;tricarboxylic acid cycle;1.41178047430783e-06!GO:0046356;acetyl-CoA catabolic process;1.41178047430783e-06!GO:0051170;nuclear import;1.46723104179808e-06!GO:0016568;chromatin modification;1.50088298937712e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.58773723958575e-06!GO:0003697;single-stranded DNA binding;1.61602427845609e-06!GO:0009109;coenzyme catabolic process;1.69057555677126e-06!GO:0006793;phosphorus metabolic process;1.71743180084197e-06!GO:0006796;phosphate metabolic process;1.71743180084197e-06!GO:0019829;cation-transporting ATPase activity;1.83599963495628e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.099242327461e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.099242327461e-06!GO:0006606;protein import into nucleus;2.26323318560325e-06!GO:0005667;transcription factor complex;2.33473304409637e-06!GO:0051187;cofactor catabolic process;2.45095049934061e-06!GO:0016564;transcription repressor activity;2.53381640634885e-06!GO:0051188;cofactor biosynthetic process;2.63034967058602e-06!GO:0030029;actin filament-based process;2.9427425607345e-06!GO:0016853;isomerase activity;2.94408924382983e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.01085094067111e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.01085094067111e-06!GO:0016310;phosphorylation;3.19040832816966e-06!GO:0006084;acetyl-CoA metabolic process;3.36238170499672e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.52629717615363e-06!GO:0005525;GTP binding;3.89899667993166e-06!GO:0016491;oxidoreductase activity;4.3369840030235e-06!GO:0043069;negative regulation of programmed cell death;4.38740039019337e-06!GO:0000151;ubiquitin ligase complex;5.04110202861565e-06!GO:0031988;membrane-bound vesicle;5.16426232513863e-06!GO:0005798;Golgi-associated vesicle;5.36450849495635e-06!GO:0006364;rRNA processing;5.70706225644793e-06!GO:0043066;negative regulation of apoptosis;5.86894062476391e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.40890307555599e-06!GO:0006613;cotranslational protein targeting to membrane;6.59703627984649e-06!GO:0016740;transferase activity;6.74587233969447e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.75213391642013e-06!GO:0008654;phospholipid biosynthetic process;6.93065489913548e-06!GO:0003713;transcription coactivator activity;6.97145240902773e-06!GO:0009117;nucleotide metabolic process;7.09194808327781e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.44231616924592e-06!GO:0044440;endosomal part;7.52365438343632e-06!GO:0010008;endosome membrane;7.52365438343632e-06!GO:0032446;protein modification by small protein conjugation;7.53655445912309e-06!GO:0000139;Golgi membrane;8.26372009815611e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.26372009815611e-06!GO:0016563;transcription activator activity;8.30383830814438e-06!GO:0006754;ATP biosynthetic process;8.44780766178127e-06!GO:0006753;nucleoside phosphate metabolic process;8.44780766178127e-06!GO:0016859;cis-trans isomerase activity;9.0527810299386e-06!GO:0007010;cytoskeleton organization and biogenesis;9.24909908062101e-06!GO:0000785;chromatin;9.40432831614164e-06!GO:0009892;negative regulation of metabolic process;9.54304362584658e-06!GO:0006916;anti-apoptosis;9.63153697978172e-06!GO:0016567;protein ubiquitination;1.00895505583895e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.02259499598324e-05!GO:0005813;centrosome;1.05184769869185e-05!GO:0000245;spliceosome assembly;1.18419696250484e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.18464997177512e-05!GO:0016072;rRNA metabolic process;1.19855925159375e-05!GO:0031982;vesicle;1.41475971267382e-05!GO:0003724;RNA helicase activity;1.41525457810008e-05!GO:0045786;negative regulation of progression through cell cycle;1.49159355716959e-05!GO:0003714;transcription corepressor activity;1.70743139189301e-05!GO:0032561;guanyl ribonucleotide binding;1.79738332818033e-05!GO:0019001;guanyl nucleotide binding;1.79738332818033e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.86114264929365e-05!GO:0016787;hydrolase activity;1.93813913548744e-05!GO:0031410;cytoplasmic vesicle;1.97116173026705e-05!GO:0042981;regulation of apoptosis;1.9806070056689e-05!GO:0065007;biological regulation;2.13088326018808e-05!GO:0016481;negative regulation of transcription;2.17268530505798e-05!GO:0043067;regulation of programmed cell death;2.34394428089779e-05!GO:0019222;regulation of metabolic process;2.56847959537553e-05!GO:0043623;cellular protein complex assembly;2.63931824129598e-05!GO:0008092;cytoskeletal protein binding;2.72045871326678e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.22673808788279e-05!GO:0045259;proton-transporting ATP synthase complex;3.23699163724699e-05!GO:0005773;vacuole;3.45897948402216e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.5730812491637e-05!GO:0030867;rough endoplasmic reticulum membrane;3.68731026708791e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.78592864927612e-05!GO:0005815;microtubule organizing center;3.84718267304818e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.85135660581658e-05!GO:0009108;coenzyme biosynthetic process;3.88291917724956e-05!GO:0005770;late endosome;4.30441348813128e-05!GO:0005791;rough endoplasmic reticulum;4.34924968031487e-05!GO:0031968;organelle outer membrane;4.47650246563946e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71323099399008e-05!GO:0016779;nucleotidyltransferase activity;5.22955291602229e-05!GO:0019899;enzyme binding;5.28962691247214e-05!GO:0006752;group transfer coenzyme metabolic process;6.15161029753645e-05!GO:0019867;outer membrane;6.45542173877974e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.31010292173463e-05!GO:0051427;hormone receptor binding;7.56956910993102e-05!GO:0051789;response to protein stimulus;9.87537854176265e-05!GO:0006986;response to unfolded protein;9.87537854176265e-05!GO:0006612;protein targeting to membrane;9.95806813733345e-05!GO:0008361;regulation of cell size;9.9742695295007e-05!GO:0005769;early endosome;0.000125049381497679!GO:0051329;interphase of mitotic cell cycle;0.000140057311215353!GO:0004298;threonine endopeptidase activity;0.00014208819327262!GO:0035257;nuclear hormone receptor binding;0.000146868360913781!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000153559125237001!GO:0016049;cell growth;0.000153559125237001!GO:0000323;lytic vacuole;0.000156372288133056!GO:0005764;lysosome;0.000156372288133056!GO:0048522;positive regulation of cellular process;0.000157576477429686!GO:0005048;signal sequence binding;0.000160225294073481!GO:0005741;mitochondrial outer membrane;0.000197718830716072!GO:0007005;mitochondrion organization and biogenesis;0.000199792579021563!GO:0006334;nucleosome assembly;0.000199815594129804!GO:0006091;generation of precursor metabolites and energy;0.000213222251913856!GO:0007264;small GTPase mediated signal transduction;0.000222170031490853!GO:0016126;sterol biosynthetic process;0.000289117409064429!GO:0005819;spindle;0.000291313666796998!GO:0019843;rRNA binding;0.000310461789149473!GO:0030133;transport vesicle;0.000325128338517477!GO:0031497;chromatin assembly;0.000341253633558274!GO:0030027;lamellipodium;0.000354028891899287!GO:0003690;double-stranded DNA binding;0.000398500720146833!GO:0008186;RNA-dependent ATPase activity;0.000404745390237724!GO:0043021;ribonucleoprotein binding;0.000404745390237724!GO:0051325;interphase;0.000419190576353266!GO:0005885;Arp2/3 protein complex;0.000422356256606642!GO:0045454;cell redox homeostasis;0.000468971031186766!GO:0051252;regulation of RNA metabolic process;0.000470678433312823!GO:0008250;oligosaccharyl transferase complex;0.000475491071534736!GO:0033116;ER-Golgi intermediate compartment membrane;0.000475491071534736!GO:0046474;glycerophospholipid biosynthetic process;0.000486367740070658!GO:0001558;regulation of cell growth;0.000517011028791175!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000523952677211009!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000529241569019216!GO:0016044;membrane organization and biogenesis;0.000580766825234083!GO:0005905;coated pit;0.000596212233043006!GO:0006402;mRNA catabolic process;0.000627871138886235!GO:0030663;COPI coated vesicle membrane;0.000657494137453701!GO:0030126;COPI vesicle coat;0.000657494137453701!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000670705485534544!GO:0007243;protein kinase cascade;0.000686602299675263!GO:0004576;oligosaccharyl transferase activity;0.000686602299675263!GO:0051168;nuclear export;0.000744099000854485!GO:0003729;mRNA binding;0.000749885270266025!GO:0005762;mitochondrial large ribosomal subunit;0.000767992791197702!GO:0000315;organellar large ribosomal subunit;0.000767992791197702!GO:0045893;positive regulation of transcription, DNA-dependent;0.000823244253834725!GO:0006891;intra-Golgi vesicle-mediated transport;0.000868816750411571!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000882415394427343!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000889207658848023!GO:0000059;protein import into nucleus, docking;0.000976393242523745!GO:0008610;lipid biosynthetic process;0.000991139921083675!GO:0003682;chromatin binding;0.00103509413946466!GO:0030137;COPI-coated vesicle;0.00111677496463485!GO:0004004;ATP-dependent RNA helicase activity;0.00115586870650776!GO:0051920;peroxiredoxin activity;0.00118832330779836!GO:0004674;protein serine/threonine kinase activity;0.00127504244436302!GO:0045892;negative regulation of transcription, DNA-dependent;0.00141275848457595!GO:0018196;peptidyl-asparagine modification;0.00147514855192351!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00147514855192351!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0015502646020329!GO:0044262;cellular carbohydrate metabolic process;0.00155869363184261!GO:0030134;ER to Golgi transport vesicle;0.00155869363184261!GO:0030041;actin filament polymerization;0.00158106832056585!GO:0006950;response to stress;0.00159988173497364!GO:0045941;positive regulation of transcription;0.00166946284686726!GO:0007051;spindle organization and biogenesis;0.00168535834569811!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00175401693766609!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00184754401908023!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00184754401908023!GO:0016363;nuclear matrix;0.00185239412515577!GO:0046489;phosphoinositide biosynthetic process;0.0018727452904601!GO:0009165;nucleotide biosynthetic process;0.00190334778196577!GO:0035258;steroid hormone receptor binding;0.00192776682471668!GO:0048471;perinuclear region of cytoplasm;0.00213387073103509!GO:0048500;signal recognition particle;0.00213507895260929!GO:0006695;cholesterol biosynthetic process;0.00215081748319862!GO:0030521;androgen receptor signaling pathway;0.00223851950038162!GO:0008047;enzyme activator activity;0.00227050018289716!GO:0043488;regulation of mRNA stability;0.00228716335636446!GO:0043487;regulation of RNA stability;0.00228716335636446!GO:0030127;COPII vesicle coat;0.00232527876314169!GO:0012507;ER to Golgi transport vesicle membrane;0.00232527876314169!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00234221232998471!GO:0000314;organellar small ribosomal subunit;0.00235443711174889!GO:0005763;mitochondrial small ribosomal subunit;0.00235443711174889!GO:0003899;DNA-directed RNA polymerase activity;0.00239677432492325!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00255590329671035!GO:0031072;heat shock protein binding;0.00255590329671035!GO:0031323;regulation of cellular metabolic process;0.00268784145542795!GO:0051128;regulation of cellular component organization and biogenesis;0.00277580312479971!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00301885616290349!GO:0046467;membrane lipid biosynthetic process;0.0030541216709863!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00309932327105974!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00309932327105974!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00309932327105974!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00323035231937852!GO:0030658;transport vesicle membrane;0.0032390226340481!GO:0008154;actin polymerization and/or depolymerization;0.00332564036580241!GO:0001726;ruffle;0.00334597950806758!GO:0006352;transcription initiation;0.00343957999503942!GO:0000075;cell cycle checkpoint;0.00350281137905155!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00350281137905155!GO:0006892;post-Golgi vesicle-mediated transport;0.00354568311557911!GO:0016197;endosome transport;0.00382448626293094!GO:0033673;negative regulation of kinase activity;0.00405743730724682!GO:0006469;negative regulation of protein kinase activity;0.00405743730724682!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0042064202207771!GO:0032984;macromolecular complex disassembly;0.00454734076868!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00462015760433402!GO:0045047;protein targeting to ER;0.00462015760433402!GO:0030176;integral to endoplasmic reticulum membrane;0.00463332825324515!GO:0007050;cell cycle arrest;0.00476878659017314!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00477701620507755!GO:0008180;signalosome;0.00494395936319238!GO:0030118;clathrin coat;0.00500076713927675!GO:0016251;general RNA polymerase II transcription factor activity;0.00514172608628759!GO:0006979;response to oxidative stress;0.0051944272669265!GO:0006414;translational elongation;0.00527559024007385!GO:0008139;nuclear localization sequence binding;0.00533609963778397!GO:0051287;NAD binding;0.00535407527569376!GO:0031901;early endosome membrane;0.00537285688142571!GO:0030132;clathrin coat of coated pit;0.0054557576878486!GO:0006261;DNA-dependent DNA replication;0.00551800947641632!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00560745926414619!GO:0030384;phosphoinositide metabolic process;0.00560745926414619!GO:0004177;aminopeptidase activity;0.00599479170293353!GO:0043681;protein import into mitochondrion;0.00610435757263039!GO:0006302;double-strand break repair;0.00617195933001485!GO:0045045;secretory pathway;0.00617203779303013!GO:0006383;transcription from RNA polymerase III promoter;0.00621035439171777!GO:0048518;positive regulation of biological process;0.00621744959819572!GO:0017166;vinculin binding;0.00621744959819572!GO:0051348;negative regulation of transferase activity;0.00645679021639064!GO:0030518;steroid hormone receptor signaling pathway;0.00647550776263978!GO:0005096;GTPase activator activity;0.00668037652954259!GO:0003702;RNA polymerase II transcription factor activity;0.00668459788728518!GO:0000776;kinetochore;0.00678537861680352!GO:0050662;coenzyme binding;0.00687713441214197!GO:0065009;regulation of a molecular function;0.00691583010055337!GO:0016408;C-acyltransferase activity;0.00691652249639952!GO:0007265;Ras protein signal transduction;0.00720273050694084!GO:0006350;transcription;0.00727785495144133!GO:0006650;glycerophospholipid metabolic process;0.00732314535621101!GO:0015631;tubulin binding;0.00777929146721307!GO:0000775;chromosome, pericentric region;0.00782258452040532!GO:0003711;transcription elongation regulator activity;0.00791041623878087!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00810740357744601!GO:0008312;7S RNA binding;0.00815316009747194!GO:0051087;chaperone binding;0.00815316009747194!GO:0050681;androgen receptor binding;0.00832704770748062!GO:0044452;nucleolar part;0.00849557342788537!GO:0031124;mRNA 3'-end processing;0.00888648518616427!GO:0005586;collagen type III;0.00909595310383806!GO:0043241;protein complex disassembly;0.00909787927156531!GO:0031625;ubiquitin protein ligase binding;0.00910813994267862!GO:0005100;Rho GTPase activator activity;0.00919987372515063!GO:0030660;Golgi-associated vesicle membrane;0.00937985338201253!GO:0003779;actin binding;0.00938079163449297!GO:0030880;RNA polymerase complex;0.00943076907290446!GO:0048487;beta-tubulin binding;0.00945266214033133!GO:0006607;NLS-bearing substrate import into nucleus;0.00964567814912787!GO:0030659;cytoplasmic vesicle membrane;0.00964567814912787!GO:0006897;endocytosis;0.00964567814912787!GO:0010324;membrane invagination;0.00964567814912787!GO:0006401;RNA catabolic process;0.00982038122987388!GO:0006626;protein targeting to mitochondrion;0.010654240136143!GO:0000082;G1/S transition of mitotic cell cycle;0.0106850447822844!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0109506033936647!GO:0033043;regulation of organelle organization and biogenesis;0.0109506033936647!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0109681394099643!GO:0006509;membrane protein ectodomain proteolysis;0.0115114517783603!GO:0033619;membrane protein proteolysis;0.0115114517783603!GO:0008094;DNA-dependent ATPase activity;0.0115334304985596!GO:0030833;regulation of actin filament polymerization;0.0116592179553196!GO:0007052;mitotic spindle organization and biogenesis;0.0116637999517442!GO:0042802;identical protein binding;0.0119315872788807!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0122179795382053!GO:0005869;dynactin complex;0.0122438215941273!GO:0016584;nucleosome positioning;0.0123501590865016!GO:0007006;mitochondrial membrane organization and biogenesis;0.0123723074040793!GO:0000339;RNA cap binding;0.0127390068807087!GO:0051052;regulation of DNA metabolic process;0.0128842139845795!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0134029716949875!GO:0006740;NADPH regeneration;0.0141193329788171!GO:0006098;pentose-phosphate shunt;0.0141193329788171!GO:0008286;insulin receptor signaling pathway;0.0146667115838913!GO:0031123;RNA 3'-end processing;0.015009880250388!GO:0010468;regulation of gene expression;0.0154371678870594!GO:0043624;cellular protein complex disassembly;0.0156065941828767!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0156501973958859!GO:0015399;primary active transmembrane transporter activity;0.0156501973958859!GO:0005862;muscle thin filament tropomyosin;0.0166274115079797!GO:0030119;AP-type membrane coat adaptor complex;0.0172226028125855!GO:0006338;chromatin remodeling;0.0172457271136673!GO:0003678;DNA helicase activity;0.0173231600585036!GO:0043284;biopolymer biosynthetic process;0.0177848413188545!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178697415879806!GO:0000428;DNA-directed RNA polymerase complex;0.0178697415879806!GO:0042158;lipoprotein biosynthetic process;0.0179919343549448!GO:0005832;chaperonin-containing T-complex;0.018718783133669!GO:0006595;polyamine metabolic process;0.0195051906467918!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0197840156439355!GO:0000049;tRNA binding;0.0201816229587353!GO:0044433;cytoplasmic vesicle part;0.0208753180877782!GO:0003684;damaged DNA binding;0.0215313660783034!GO:0006405;RNA export from nucleus;0.0215313660783034!GO:0051101;regulation of DNA binding;0.021563591842208!GO:0006506;GPI anchor biosynthetic process;0.0220792724654219!GO:0005637;nuclear inner membrane;0.0221468013312987!GO:0040008;regulation of growth;0.0224946484116222!GO:0019752;carboxylic acid metabolic process;0.0229562612930263!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0230330570327781!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0230330570327781!GO:0007034;vacuolar transport;0.0231089752530403!GO:0035035;histone acetyltransferase binding;0.0232668065554484!GO:0006505;GPI anchor metabolic process;0.0232928271982364!GO:0006497;protein amino acid lipidation;0.0234781987600537!GO:0005801;cis-Golgi network;0.023763195935439!GO:0005669;transcription factor TFIID complex;0.0238906641057236!GO:0000209;protein polyubiquitination;0.0239133410107245!GO:0031902;late endosome membrane;0.0247100513074668!GO:0043407;negative regulation of MAP kinase activity;0.0247100513074668!GO:0030522;intracellular receptor-mediated signaling pathway;0.0247693883091118!GO:0005581;collagen;0.0248195166575029!GO:0008147;structural constituent of bone;0.0250055417790257!GO:0006082;organic acid metabolic process;0.0250655020695222!GO:0009967;positive regulation of signal transduction;0.026027045123833!GO:0051270;regulation of cell motility;0.026027045123833!GO:0005874;microtubule;0.0260283531675453!GO:0012506;vesicle membrane;0.0264547152938935!GO:0046483;heterocycle metabolic process;0.0265219548771424!GO:0001952;regulation of cell-matrix adhesion;0.0266246760354468!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0270959620904662!GO:0007093;mitotic cell cycle checkpoint;0.0271244868119438!GO:0005083;small GTPase regulator activity;0.0272610896047983!GO:0006289;nucleotide-excision repair;0.0278364444420089!GO:0006376;mRNA splice site selection;0.0278364444420089!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0278364444420089!GO:0031529;ruffle organization and biogenesis;0.0279071475745981!GO:0030131;clathrin adaptor complex;0.0281822890484463!GO:0006310;DNA recombination;0.0282513680989048!GO:0030032;lamellipodium biogenesis;0.0282513680989048!GO:0043022;ribosome binding;0.0284249310955559!GO:0000096;sulfur amino acid metabolic process;0.0286596894316465!GO:0009112;nucleobase metabolic process;0.0288030157168584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0288761984396683!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0289675144353293!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0289675144353293!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0294149576352549!GO:0022408;negative regulation of cell-cell adhesion;0.0294550844896965!GO:0006839;mitochondrial transport;0.0297249617541891!GO:0031272;regulation of pseudopodium formation;0.0303153188233449!GO:0031269;pseudopodium formation;0.0303153188233449!GO:0031344;regulation of cell projection organization and biogenesis;0.0303153188233449!GO:0031268;pseudopodium organization and biogenesis;0.0303153188233449!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0303153188233449!GO:0031274;positive regulation of pseudopodium formation;0.0303153188233449!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0303687234572164!GO:0007040;lysosome organization and biogenesis;0.0306857896423303!GO:0006611;protein export from nucleus;0.0307073033029455!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0309779044255641!GO:0015002;heme-copper terminal oxidase activity;0.0309779044255641!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0309779044255641!GO:0004129;cytochrome-c oxidase activity;0.0309779044255641!GO:0051539;4 iron, 4 sulfur cluster binding;0.0311786597007896!GO:0047485;protein N-terminus binding;0.031223348876078!GO:0015036;disulfide oxidoreductase activity;0.0315972452383043!GO:0003746;translation elongation factor activity;0.0316158720871846!GO:0006790;sulfur metabolic process;0.0326415734681435!GO:0005606;laminin-1 complex;0.0326415734681435!GO:0016301;kinase activity;0.0326415734681435!GO:0008168;methyltransferase activity;0.0327270304118384!GO:0009081;branched chain family amino acid metabolic process;0.0332532177655817!GO:0022415;viral reproductive process;0.0334970450438808!GO:0005657;replication fork;0.0337922902603628!GO:0005099;Ras GTPase activator activity;0.034179341769174!GO:0006635;fatty acid beta-oxidation;0.0342426306511166!GO:0003756;protein disulfide isomerase activity;0.0344831746497738!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0344831746497738!GO:0045792;negative regulation of cell size;0.0346744337378393!GO:0008097;5S rRNA binding;0.0349977624185769!GO:0022890;inorganic cation transmembrane transporter activity;0.0355008102098322!GO:0016741;transferase activity, transferring one-carbon groups;0.0356074848403121!GO:0016860;intramolecular oxidoreductase activity;0.0363788986466592!GO:0005684;U2-dependent spliceosome;0.0366674405133827!GO:0001872;zymosan binding;0.0366674405133827!GO:0001878;response to yeast;0.0366674405133827!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0371006334018111!GO:0015992;proton transport;0.0371235900723872!GO:0005784;translocon complex;0.0375318743801956!GO:0006643;membrane lipid metabolic process;0.0381016779540685!GO:0006818;hydrogen transport;0.039320459712367!GO:0008033;tRNA processing;0.0394271432046038!GO:0000910;cytokinesis;0.0399422305492784!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0399706176642306!GO:0007033;vacuole organization and biogenesis;0.0403846642487687!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0407491346545286!GO:0048468;cell development;0.0409662789193808!GO:0006984;ER-nuclear signaling pathway;0.0416415347889794!GO:0000786;nucleosome;0.0416481908651463!GO:0006739;NADP metabolic process;0.0420732530883025!GO:0033559;unsaturated fatty acid metabolic process;0.0421037857273428!GO:0006636;unsaturated fatty acid biosynthetic process;0.0421037857273428!GO:0051271;negative regulation of cell motility;0.0425268254306457!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0425268254306457!GO:0030125;clathrin vesicle coat;0.0425268254306457!GO:0030665;clathrin coated vesicle membrane;0.0425268254306457!GO:0032508;DNA duplex unwinding;0.0425268254306457!GO:0032392;DNA geometric change;0.0425268254306457!GO:0044420;extracellular matrix part;0.0425870901356036!GO:0031418;L-ascorbic acid binding;0.0428515326213518!GO:0006378;mRNA polyadenylation;0.0430260519901365!GO:0001953;negative regulation of cell-matrix adhesion;0.043323532451277!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0434097683232714!GO:0001527;microfibril;0.0434672386215243!GO:0008234;cysteine-type peptidase activity;0.0442163607003241!GO:0008022;protein C-terminus binding;0.0444856927765672!GO:0032940;secretion by cell;0.0444856927765672!GO:0044255;cellular lipid metabolic process;0.0444937072324956!GO:0000792;heterochromatin;0.0452322976573025!GO:0051098;regulation of binding;0.0453902629444075!GO:0030308;negative regulation of cell growth;0.0458113687869036!GO:0050811;GABA receptor binding;0.0458625924125093!GO:0006144;purine base metabolic process;0.0465825364676802!GO:0032200;telomere organization and biogenesis;0.0467014105859735!GO:0000723;telomere maintenance;0.0467014105859735!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0467890320504229!GO:0043087;regulation of GTPase activity;0.0471252335199773!GO:0016125;sterol metabolic process;0.0471928048520588!GO:0040029;regulation of gene expression, epigenetic;0.0476521454398323!GO:0043492;ATPase activity, coupled to movement of substances;0.0481277255572653!GO:0009303;rRNA transcription;0.0491899796468074!GO:0030508;thiol-disulfide exchange intermediate activity;0.049714611904957!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0497375366027276!GO:0006672;ceramide metabolic process;0.0497390205942645!GO:0031589;cell-substrate adhesion;0.0497390205942645!GO:0008218;bioluminescence;0.0499317599120199!GO:0007088;regulation of mitosis;0.0499317599120199!GO:0050749;apolipoprotein E receptor binding;0.0499317599120199
|sample_id=11452
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=heart
|top_motifs=MYBL2:1.77810710407;TFAP4:1.40376881754;STAT1,3:1.38469538003;ZNF238:1.35001564341;PATZ1:1.31261933246;TLX1..3_NFIC{dimer}:1.27174157031;XBP1:1.26736941677;NFATC1..3:1.22123010901;HOX{A5,B5}:1.18748856566;MAZ:1.13442666469;AR:1.10021043661;NR3C1:1.07410449316;NKX2-2,8:1.05302429436;MZF1:0.981745534573;IKZF1:0.959903076646;NKX3-1:0.92215716956;RXR{A,B,G}:0.92058428266;GTF2I:0.91801906978;GFI1B:0.906392259537;TEAD1:0.86934871376;SMAD1..7,9:0.863175408024;FOXA2:0.844999921637;ADNP_IRX_SIX_ZHX:0.835075165023;LEF1_TCF7_TCF7L1,2:0.814643579336;PAX5:0.77776474724;EBF1:0.776726702957;GFI1:0.775919265882;HIC1:0.767522135555;GTF2A1,2:0.76275563849;CDC5L:0.761468549243;HOX{A4,D4}:0.761123126791;POU3F1..4:0.730865184516;TFAP2{A,C}:0.718009085591;NKX2-1,4:0.711644874542;MTE{core}:0.668957199939;PRDM1:0.663623552174;SRF:0.656551698565;SOX17:0.650808761813;TFDP1:0.638537686362;EGR1..3:0.636026645379;SP1:0.633628979331;MAFB:0.613691909087;NR1H4:0.599160350328;MYFfamily:0.576835878306;HBP1_HMGB_SSRP1_UBTF:0.57037278124;HSF1,2:0.568269671177;NKX6-1,2:0.55361561279;ZFP161:0.535209815591;NANOG:0.53187786278;MED-1{core}:0.529033786605;EN1,2:0.527633077735;GATA4:0.524467482539;bHLH_family:0.523308023923;CRX:0.514392468148;AHR_ARNT_ARNT2:0.504281458656;GATA6:0.496912416919;NRF1:0.477245089299;PDX1:0.46738215538;ATF6:0.461289364874;NHLH1,2:0.445271507679;XCPE1{core}:0.443761351089;NFIX:0.44271052427;TAL1_TCF{3,4,12}:0.441997247957;ZNF143:0.434926534375;SPZ1:0.419569077871;GZF1:0.417252736066;NFY{A,B,C}:0.410041761617;SREBF1,2:0.403114895727;PRRX1,2:0.393261253131;STAT2,4,6:0.384228783104;TBX4,5:0.384154088629;EP300:0.379145765674;SOX2:0.378778899187;TFAP2B:0.368914154976;TGIF1:0.365293232315;ZNF148:0.360202592254;FOX{I1,J2}:0.336349417938;FOXO1,3,4:0.321743740415;PAX4:0.314783985963;GCM1,2:0.312067514104;POU1F1:0.31000308803;IRF7:0.309212771645;NFE2L2:0.274367060632;HNF1A:0.262539576477;EVI1:0.261023103452;E2F1..5:0.258056994077;ELK1,4_GABP{A,B1}:0.250840033697;LHX3,4:0.237207516586;SOX5:0.22407111954;RBPJ:0.212692377476;HAND1,2:0.189952343355;ALX4:0.161742376466;HES1:0.157425690424;TFCP2:0.146776682136;STAT5{A,B}:0.144450224048;CUX2:0.140408797447;PAX3,7:0.130462659171;KLF4:0.129530563036;HIF1A:0.121039686818;POU6F1:0.115950619287;PAX8:0.10822018374;BPTF:0.104455749762;MEF2{A,B,C,D}:0.0853635631284;BREu{core}:0.0841880574267;HMGA1,2:0.0826528756018;TP53:0.0721183873702;HLF:0.0641475266619;DBP:0.0548734800618;ELF1,2,4:0.0529118673632;FOX{D1,D2}:0.0499446042397;CEBPA,B_DDIT3:0.0298202231624;HNF4A_NR2F1,2:0.0265162709338;SOX{8,9,10}:0.0258737112635;T:0.0223844311908;FOS_FOS{B,L1}_JUN{B,D}:0.0173272889409;RXRA_VDR{dimer}:-0.00378220190019;REST:-0.00609371699498;IRF1,2:-0.00819559598109;MYB:-0.0356486917977;YY1:-0.0430713042764;ZIC1..3:-0.0596537154517;NFE2:-0.0607777647095;CDX1,2,4:-0.0688879168939;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0713296305917;BACH2:-0.0852777682772;VSX1,2:-0.106948168985;PAX6:-0.108116159161;RREB1:-0.125006311428;RFX1:-0.132921736033;FOXD3:-0.133523846933;TEF:-0.147767617487;ZBTB6:-0.148644256541;FOXN1:-0.150178170069;ETS1,2:-0.151086228485;PBX1:-0.154062077954;RORA:-0.1594787961;TBP:-0.163718758047;ONECUT1,2:-0.166703777094;UFEwm:-0.172160136489;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.172950412875;NANOG{mouse}:-0.180556556889;MTF1:-0.185329035231;NKX2-3_NKX2-5:-0.196415419908;FOSL2:-0.212703030672;PAX1,9:-0.2159185442;GLI1..3:-0.222124628973;JUN:-0.242320423716;ZNF423:-0.243865133832;NKX3-2:-0.264596287484;TOPORS:-0.268366790285;SPIB:-0.271209463071;ESRRA:-0.272902873484;ATF4:-0.282179284904;ALX1:-0.283753521535;FOXM1:-0.288822680704;NFE2L1:-0.301472638026;CREB1:-0.312560959974;TLX2:-0.353765226377;HMX1:-0.374372661016;RFX2..5_RFXANK_RFXAP:-0.385382559709;AIRE:-0.407838592945;RUNX1..3:-0.422342211078;SPI1:-0.433387086509;FOXP3:-0.441760343721;ZNF384:-0.454404786886;ATF5_CREB3:-0.478382359984;NFKB1_REL_RELA:-0.486433253378;ESR1:-0.511101350376;FOXQ1:-0.535940826133;PAX2:-0.538560904449;DMAP1_NCOR{1,2}_SMARC:-0.541936125834;FOXP1:-0.5586037383;NR6A1:-0.578078065055;POU5F1:-0.578473787304;FOX{F1,F2,J1}:-0.609727494022;HOXA9_MEIS1:-0.615284262406;NFIL3:-0.619930631844;NR5A1,2:-0.665518498654;ATF2:-0.674805640587;HOX{A6,A7,B6,B7}:-0.678698016734;ZBTB16:-0.704913889112;FOXL1:-0.707273470191;OCT4_SOX2{dimer}:-0.747370417693;PITX1..3:-0.755470446549;ARID5B:-0.813425603262;PPARG:-0.918429078577;POU2F1..3:-0.929670958211;LMO2:-0.95837355109;MYOD1:-1.10718369171;ZEB1:-1.1689926206;SNAI1..3:-1.17765023976;IKZF2:-1.63057594286
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11452-119A3;search_select_hide=table117:FF:11452-119A3
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Fibroblast - Cardiac, donor4
Species:Human (Homo sapiens)
Library ID:CNhs11909
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueheart
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2136
catalog numberSC6305
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005682
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11909 CAGE DRX008246 DRR009118
Accession ID Hg19

Library idBAMCTSS
CNhs11909 DRZ000543 DRZ001928
Accession ID Hg38

Library idBAMCTSS
CNhs11909 DRZ011893 DRZ013278
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.197
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.118
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.118
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.075
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.502
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.118
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.141
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0491
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0319
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.118
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.259
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0141
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.026
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.118
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.118
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.351
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.118
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.21
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.675
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11909

Jaspar motifP-value
MA0002.27.33094e-4
MA0003.10.159
MA0004.10.52
MA0006.10.756
MA0007.10.449
MA0009.10.191
MA0014.10.525
MA0017.10.0545
MA0018.20.156
MA0019.10.504
MA0024.10.15
MA0025.10.00443
MA0027.10.667
MA0028.10.732
MA0029.10.196
MA0030.10.569
MA0031.10.15
MA0035.20.298
MA0038.10.0683
MA0039.20.84
MA0040.10.299
MA0041.10.13
MA0042.10.209
MA0043.10.135
MA0046.10.559
MA0047.20.443
MA0048.10.773
MA0050.10.761
MA0051.10.499
MA0052.10.515
MA0055.10.666
MA0057.10.655
MA0058.10.592
MA0059.10.0556
MA0060.10.0115
MA0061.15.12828e-4
MA0062.20.315
MA0065.26.98969e-4
MA0066.10.0736
MA0067.10.529
MA0068.10.00579
MA0069.10.969
MA0070.10.735
MA0071.10.121
MA0072.10.673
MA0073.10.761
MA0074.10.594
MA0076.10.481
MA0077.10.678
MA0078.10.451
MA0079.20.339
MA0080.26.8228e-4
MA0081.10.354
MA0083.10.144
MA0084.10.182
MA0087.10.256
MA0088.10.497
MA0090.10.0328
MA0091.10.542
MA0092.10.745
MA0093.10.641
MA0099.20.135
MA0100.10.742
MA0101.10.0479
MA0102.20.572
MA0103.14.30793e-5
MA0104.20.127
MA0105.15.40366e-8
MA0106.10.14
MA0107.10.0142
MA0108.20.00258
MA0111.10.509
MA0112.25.3793e-4
MA0113.10.298
MA0114.10.0209
MA0115.10.113
MA0116.11.09335e-4
MA0117.10.737
MA0119.10.516
MA0122.10.826
MA0124.10.378
MA0125.10.271
MA0131.10.595
MA0135.10.367
MA0136.10.00485
MA0137.21.66443e-4
MA0138.20.0798
MA0139.10.0225
MA0140.10.238
MA0141.10.0707
MA0142.10.288
MA0143.10.984
MA0144.10.299
MA0145.10.509
MA0146.10.113
MA0147.10.063
MA0148.10.421
MA0149.10.049
MA0150.10.0948
MA0152.10.0487
MA0153.10.0208
MA0154.10.00206
MA0155.10.423
MA0156.10.156
MA0157.10.59
MA0159.10.0552
MA0160.10.131
MA0162.10.228
MA0163.13.606e-6
MA0164.10.389
MA0258.10.00152
MA0259.10.445



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11909

Novel motifP-value
10.0282
100.0719
1000.203
1010.608
1020.221
1030.543
1040.975
1050.984
1060.028
1070.548
1080.205
1090.0156
110.0453
1100.126
1110.00874
1120.123
1130.494
1140.0435
1150.311
1160.35
1170.0623
1180.0886
1190.0452
120.902
1200.199
1210.723
1220.43
1234.96534e-4
1240.247
1250.0104
1260.256
1270.0441
1280.562
1290.39
130.105
1300.0131
1310.147
1320.962
1330.308
1340.462
1350.771
1360.934
1370.753
1380.148
1390.0129
140.601
1400.546
1410.671
1420.619
1430.0236
1440.736
1450.286
1460.696
1470.933
1480.168
1490.705
150.17
1500.372
1510.373
1520.331
1530.459
1540.772
1550.00707
1560.515
1570.632
1580.043
1590.541
160.289
1600.123
1610.293
1620.829
1630.848
1640.121
1650.816
1660.37
1670.0655
1680.453
1690.049
170.212
180.13
190.642
20.92
200.518
210.359
220.781
230.431
240.735
250.245
260.076
270.514
280.586
290.048
30.266
300.561
310.697
320.535
330.514
340.954
350.113
360.00967
370.0779
380.271
390.811
40.0777
400.0137
410.554
420.524
430.155
440.086
450.927
460.0565
470.0699
480.133
490.0944
50.734
500.793
510.51
520.874
530.513
540.663
550.777
560.565
570.218
580.155
590.111
60.478
600.15
610.252
620.0705
630.309
640.0897
650.185
660.835
670.134
680.992
690.133
70.316
700.00871
710.0744
720.897
730.244
740.546
750.0563
760.349
770.137
780.273
790.386
80.124
800.972
810.378
820.0636
830.556
840.563
850.124
860.722
870.981
880.926
890.308
90.973
900.512
910.707
920.389
930.367
940.0354
950.0142
960.239
970.401
980.0944
990.547



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11909


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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