FF:11452-119A3: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Fibroblast - Cardiac, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs11909
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2136
catalog number	SC6305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005682

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11909		CAGE		DRX008246		DRR009118

Accession ID Hg19

Library id		BAM		CTSS
CNhs11909		DRZ000543		DRZ001928

Accession ID Hg38

Library id		BAM		CTSS
CNhs11909		DRZ011893		DRZ013278

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.197
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.118
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.118
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.075
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.502
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.118
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.141
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0491
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0319
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.118
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.259
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0141
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.026
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.118
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.118
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.351
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.118
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.21
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.675
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11909

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.33094e-4
MA0003.1	MA0003.1	0.159
MA0004.1	MA0004.1	0.52
MA0006.1	MA0006.1	0.756
MA0007.1	MA0007.1	0.449
MA0009.1	MA0009.1	0.191
MA0014.1	MA0014.1	0.525
MA0017.1	MA0017.1	0.0545
MA0018.2	MA0018.2	0.156
MA0019.1	MA0019.1	0.504
MA0024.1	MA0024.1	0.15
MA0025.1	MA0025.1	0.00443
MA0027.1	MA0027.1	0.667
MA0028.1	MA0028.1	0.732
MA0029.1	MA0029.1	0.196
MA0030.1	MA0030.1	0.569
MA0031.1	MA0031.1	0.15
MA0035.2	MA0035.2	0.298
MA0038.1	MA0038.1	0.0683
MA0039.2	MA0039.2	0.84
MA0040.1	MA0040.1	0.299
MA0041.1	MA0041.1	0.13
MA0042.1	MA0042.1	0.209
MA0043.1	MA0043.1	0.135
MA0046.1	MA0046.1	0.559
MA0047.2	MA0047.2	0.443
MA0048.1	MA0048.1	0.773
MA0050.1	MA0050.1	0.761
MA0051.1	MA0051.1	0.499
MA0052.1	MA0052.1	0.515
MA0055.1	MA0055.1	0.666
MA0057.1	MA0057.1	0.655
MA0058.1	MA0058.1	0.592
MA0059.1	MA0059.1	0.0556
MA0060.1	MA0060.1	0.0115
MA0061.1	MA0061.1	5.12828e-4
MA0062.2	MA0062.2	0.315
MA0065.2	MA0065.2	6.98969e-4
MA0066.1	MA0066.1	0.0736
MA0067.1	MA0067.1	0.529
MA0068.1	MA0068.1	0.00579
MA0069.1	MA0069.1	0.969
MA0070.1	MA0070.1	0.735
MA0071.1	MA0071.1	0.121
MA0072.1	MA0072.1	0.673
MA0073.1	MA0073.1	0.761
MA0074.1	MA0074.1	0.594
MA0076.1	MA0076.1	0.481
MA0077.1	MA0077.1	0.678
MA0078.1	MA0078.1	0.451
MA0079.2	MA0079.2	0.339
MA0080.2	MA0080.2	6.8228e-4
MA0081.1	MA0081.1	0.354
MA0083.1	MA0083.1	0.144
MA0084.1	MA0084.1	0.182
MA0087.1	MA0087.1	0.256
MA0088.1	MA0088.1	0.497
MA0090.1	MA0090.1	0.0328
MA0091.1	MA0091.1	0.542
MA0092.1	MA0092.1	0.745
MA0093.1	MA0093.1	0.641
MA0099.2	MA0099.2	0.135
MA0100.1	MA0100.1	0.742
MA0101.1	MA0101.1	0.0479
MA0102.2	MA0102.2	0.572
MA0103.1	MA0103.1	4.30793e-5
MA0104.2	MA0104.2	0.127
MA0105.1	MA0105.1	5.40366e-8
MA0106.1	MA0106.1	0.14
MA0107.1	MA0107.1	0.0142
MA0108.2	MA0108.2	0.00258
MA0111.1	MA0111.1	0.509
MA0112.2	MA0112.2	5.3793e-4
MA0113.1	MA0113.1	0.298
MA0114.1	MA0114.1	0.0209
MA0115.1	MA0115.1	0.113
MA0116.1	MA0116.1	1.09335e-4
MA0117.1	MA0117.1	0.737
MA0119.1	MA0119.1	0.516
MA0122.1	MA0122.1	0.826
MA0124.1	MA0124.1	0.378
MA0125.1	MA0125.1	0.271
MA0131.1	MA0131.1	0.595
MA0135.1	MA0135.1	0.367
MA0136.1	MA0136.1	0.00485
MA0137.2	MA0137.2	1.66443e-4
MA0138.2	MA0138.2	0.0798
MA0139.1	MA0139.1	0.0225
MA0140.1	MA0140.1	0.238
MA0141.1	MA0141.1	0.0707
MA0142.1	MA0142.1	0.288
MA0143.1	MA0143.1	0.984
MA0144.1	MA0144.1	0.299
MA0145.1	MA0145.1	0.509
MA0146.1	MA0146.1	0.113
MA0147.1	MA0147.1	0.063
MA0148.1	MA0148.1	0.421
MA0149.1	MA0149.1	0.049
MA0150.1	MA0150.1	0.0948
MA0152.1	MA0152.1	0.0487
MA0153.1	MA0153.1	0.0208
MA0154.1	MA0154.1	0.00206
MA0155.1	MA0155.1	0.423
MA0156.1	MA0156.1	0.156
MA0157.1	MA0157.1	0.59
MA0159.1	MA0159.1	0.0552
MA0160.1	MA0160.1	0.131
MA0162.1	MA0162.1	0.228
MA0163.1	MA0163.1	3.606e-6
MA0164.1	MA0164.1	0.389
MA0258.1	MA0258.1	0.00152
MA0259.1	MA0259.1	0.445

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11909

Novel motif	Logo	P-value
1	1	0.0282
10	10	0.0719
100	100	0.203
101	101	0.608
102	102	0.221
103	103	0.543
104	104	0.975
105	105	0.984
106	106	0.028
107	107	0.548
108	108	0.205
109	109	0.0156
11	11	0.0453
110	110	0.126
111	111	0.00874
112	112	0.123
113	113	0.494
114	114	0.0435
115	115	0.311
116	116	0.35
117	117	0.0623
118	118	0.0886
119	119	0.0452
12	12	0.902
120	120	0.199
121	121	0.723
122	122	0.43
123	123	4.96534e-4
124	124	0.247
125	125	0.0104
126	126	0.256
127	127	0.0441
128	128	0.562
129	129	0.39
13	13	0.105
130	130	0.0131
131	131	0.147
132	132	0.962
133	133	0.308
134	134	0.462
135	135	0.771
136	136	0.934
137	137	0.753
138	138	0.148
139	139	0.0129
14	14	0.601
140	140	0.546
141	141	0.671
142	142	0.619
143	143	0.0236
144	144	0.736
145	145	0.286
146	146	0.696
147	147	0.933
148	148	0.168
149	149	0.705
15	15	0.17
150	150	0.372
151	151	0.373
152	152	0.331
153	153	0.459
154	154	0.772
155	155	0.00707
156	156	0.515
157	157	0.632
158	158	0.043
159	159	0.541
16	16	0.289
160	160	0.123
161	161	0.293
162	162	0.829
163	163	0.848
164	164	0.121
165	165	0.816
166	166	0.37
167	167	0.0655
168	168	0.453
169	169	0.049
17	17	0.212
18	18	0.13
19	19	0.642
2	2	0.92
20	20	0.518
21	21	0.359
22	22	0.781
23	23	0.431
24	24	0.735
25	25	0.245
26	26	0.076
27	27	0.514
28	28	0.586
29	29	0.048
3	3	0.266
30	30	0.561
31	31	0.697
32	32	0.535
33	33	0.514
34	34	0.954
35	35	0.113
36	36	0.00967
37	37	0.0779
38	38	0.271
39	39	0.811
4	4	0.0777
40	40	0.0137
41	41	0.554
42	42	0.524
43	43	0.155
44	44	0.086
45	45	0.927
46	46	0.0565
47	47	0.0699
48	48	0.133
49	49	0.0944
5	5	0.734
50	50	0.793
51	51	0.51
52	52	0.874
53	53	0.513
54	54	0.663
55	55	0.777
56	56	0.565
57	57	0.218
58	58	0.155
59	59	0.111
6	6	0.478
60	60	0.15
61	61	0.252
62	62	0.0705
63	63	0.309
64	64	0.0897
65	65	0.185
66	66	0.835
67	67	0.134
68	68	0.992
69	69	0.133
7	7	0.316
70	70	0.00871
71	71	0.0744
72	72	0.897
73	73	0.244
74	74	0.546
75	75	0.0563
76	76	0.349
77	77	0.137
78	78	0.273
79	79	0.386
8	8	0.124
80	80	0.972
81	81	0.378
82	82	0.0636
83	83	0.556
84	84	0.563
85	85	0.124
86	86	0.722
87	87	0.981
88	88	0.926
89	89	0.308
9	9	0.973
90	90	0.512
91	91	0.707
92	92	0.389
93	93	0.367
94	94	0.0354
95	95	0.0142
96	96	0.239
97	97	0.401
98	98	0.0944
99	99	0.547

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11909

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000059 human cardiac fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005682
-|accession_numbers=CAGE;DRX008246;DRR009118;DRZ000543;DRZ001928
+|accession_numbers=CAGE;DRX008246;DRR009118;DRZ000543;DRZ001928;DRZ011893;DRZ013278
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
@@ Line 9: / Line 9: @@
 |created_by=tmeehan
 |creation_date=2011-06-15T12:34:29Z
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def="A fibroblast from cardiac tissue." [GOC:tfm]
 |expression_enrichment_score=chr7:35293685..35293718,-!p1@TBX20!1.88!75.62!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.85!70.02!GATA4;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.40!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.97!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.69!126.66!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.57!36.41!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.54!37.97!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.52!31.74!PEG3;;chr1:158975744..158975769,+!p10@IFI16!1.51!31.43!IFI16;;chr8:25902876..25902936,-!p1@EBF2!1.40!24.27!EBF2;;chr6:85474299..85474324,-!p1@TBX18!1.38!40.77!TBX18;;chr1:158969752..158969780,+!p6@IFI16!1.37!38.59!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.34!37.35!ZFP106;;chr18:19749386..19749404,+!p2@GATA6!1.33!28.63!GATA6;;chr3:12330560..12330579,+!p1@PPARG!1.32!23.03!PPARG;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.44!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.30!48.86!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.88!TCF12;;chr14:62162285..62162296,+!p3@HIF1A!1.24!83.09!HIF1A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.25!EBF3;;chr14:62162258..62162269,+!p2@HIF1A!1.19!137.56!HIF1A;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.32!HAND2;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.38!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.16!274.80!SNAI2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.07!SIX2;;chrY:2803415..2803468,+!p1@ZFY!1.15!13.07!ZFY;;chr11:32457075..32457095,-!p1@WT1!1.12!12.14!WT1;;chrY:21906594..21906622,-!p1@KDM5D!1.11!11.83!KDM5D;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.86!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.14!TCF4;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.08!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.20!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.58!PRRX1;;chr1:158985493..158985535,+!p4@IFI16!0.99!13.69!IFI16;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.71!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.97!88.07!SOX9;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.78!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.95!10.27!ZFPM2;;chr9:77112244..77112262,+!p1@RORB!0.95!9.03!RORB;;chr11:113930425..113930471,+!p1@ZBTB16!0.94!11.20!ZBTB16;;chr7:14029283..14029311,-!p1@ETV1!0.93!42.01!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.92!34.54!MEIS2;;chr3:12329397..12329433,+!p2@PPARG!0.91!16.81!PPARG;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.56!C11orf9;;chr8:93074803..93074845,-!p1@RUNX1T1!0.91!7.16!RUNX1T1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.89!6.85!HAND2;;chr9:14314522..14314556,-!p3@NFIB!0.87!15.56!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.86!18.98!NFIA;;chr8:116681409..116681431,-!p2@TRPS1!0.86!18.05!TRPS1;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.22!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.85!943.59!HIF1A;;chr9:14314566..14314618,-!p1@NFIB!0.85!77.49!NFIB;;chr8:116680215..116680245,-!p6@TRPS1!0.85!9.96!TRPS1;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.09!BCL3;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr5:158526459..158526481,-!p2@EBF1!0.84!8.09!EBF1;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.92!ARID5B;;chr7:64023410..64023428,-!p2@ZNF680!0.83!9.34!ZNF680;;chr1:23696448..23696453,-!p5@ZNF436!0.83!7.16!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.81!6.22!ZNF436;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.14!HMGA2;;chr9:14314476..14314487,-!p9@NFIB!0.80!5.29!NFIB;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.81!NFIB;;chr7:19157248..19157268,-!p1@TWIST1!0.78!14.94!TWIST1;;chr2:145277882..145277967,-!p3@ZEB2!0.78!9.03!ZEB2;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.22!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.78!4.98!NKX2-5;;chr8:55370487..55370503,+!p1@SOX17!0.78!4.98!SOX17;;chr8:93074848..93074871,-!p3@RUNX1T1!0.78!4.98!RUNX1T1;;chr19:46800289..46800327,+!p2@HIF3A!0.78!4.98!HIF3A;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.34!PCBP3;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.40!CREB3L1;;chr2:166326200..166326216,+!p1@CSRNP3!0.76!7.16!CSRNP3;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.65!MEIS2;;chr5:178368186..178368238,+!p1@ZNF454!0.75!8.71!ZNF454;;chr1:170632439..170632465,+!p11@PRRX1!0.75!4.67!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.74!495.14!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.74!65.04!NFIA;;chr8:116681123..116681143,-!p4@TRPS1!0.74!9.34!TRPS1;;chr5:92918956..92918969,+!p4@NR2F1!0.74!4.98!NR2F1;;chr7:17338266..17338282,+!p1@AHR!0.73!52.28!AHR;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.63!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.73!10.27!ARID5B;;chr15:96876966..96877017,+!p12@NR2F2!0.73!6.54!NR2F2;;chr18:19749353..19749367,+!p4@GATA6!0.73!4.36!GATA6;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.71!PLAGL1;;chr1:23696308..23696339,-!p2@ZNF436!0.72!9.65!ZNF436;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.60!MEIS2;;chr5:92918894..92918912,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11452-119A3
 |is_a=EFO:0002091;;FF:0000059
 |is_obsolete=
 |library_id=CNhs11909
-|library_id_phase_based=1:CNhs11909
+|library_id_phase_based=2:CNhs11909
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11452
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11452
 |name=Fibroblast - Cardiac, donor4
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11909,LSID834,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11452-119A3;search_select_hide=table117:FF:11452-119A3
 }}

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FF:11452-119A3: Difference between revisions

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Latest revision as of 18:01, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0