FF:11452-119A3: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Fibroblast - Cardiac, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs11909
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2136
catalog number	SC6305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005682

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11909		CAGE		DRX008246		DRR009118

Accession ID Hg19

Library id		BAM		CTSS
CNhs11909		DRZ000543		DRZ001928

Accession ID Hg38

Library id		BAM		CTSS
CNhs11909		DRZ011893		DRZ013278

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.197
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.118
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.118
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.075
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.502
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.118
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.141
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0491
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0319
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.118
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.259
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0141
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.026
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.118
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.118
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0333
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.351
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.118
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.21
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.675
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11909

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.33094e-4
MA0003.1	MA0003.1	0.159
MA0004.1	MA0004.1	0.52
MA0006.1	MA0006.1	0.756
MA0007.1	MA0007.1	0.449
MA0009.1	MA0009.1	0.191
MA0014.1	MA0014.1	0.525
MA0017.1	MA0017.1	0.0545
MA0018.2	MA0018.2	0.156
MA0019.1	MA0019.1	0.504
MA0024.1	MA0024.1	0.15
MA0025.1	MA0025.1	0.00443
MA0027.1	MA0027.1	0.667
MA0028.1	MA0028.1	0.732
MA0029.1	MA0029.1	0.196
MA0030.1	MA0030.1	0.569
MA0031.1	MA0031.1	0.15
MA0035.2	MA0035.2	0.298
MA0038.1	MA0038.1	0.0683
MA0039.2	MA0039.2	0.84
MA0040.1	MA0040.1	0.299
MA0041.1	MA0041.1	0.13
MA0042.1	MA0042.1	0.209
MA0043.1	MA0043.1	0.135
MA0046.1	MA0046.1	0.559
MA0047.2	MA0047.2	0.443
MA0048.1	MA0048.1	0.773
MA0050.1	MA0050.1	0.761
MA0051.1	MA0051.1	0.499
MA0052.1	MA0052.1	0.515
MA0055.1	MA0055.1	0.666
MA0057.1	MA0057.1	0.655
MA0058.1	MA0058.1	0.592
MA0059.1	MA0059.1	0.0556
MA0060.1	MA0060.1	0.0115
MA0061.1	MA0061.1	5.12828e-4
MA0062.2	MA0062.2	0.315
MA0065.2	MA0065.2	6.98969e-4
MA0066.1	MA0066.1	0.0736
MA0067.1	MA0067.1	0.529
MA0068.1	MA0068.1	0.00579
MA0069.1	MA0069.1	0.969
MA0070.1	MA0070.1	0.735
MA0071.1	MA0071.1	0.121
MA0072.1	MA0072.1	0.673
MA0073.1	MA0073.1	0.761
MA0074.1	MA0074.1	0.594
MA0076.1	MA0076.1	0.481
MA0077.1	MA0077.1	0.678
MA0078.1	MA0078.1	0.451
MA0079.2	MA0079.2	0.339
MA0080.2	MA0080.2	6.8228e-4
MA0081.1	MA0081.1	0.354
MA0083.1	MA0083.1	0.144
MA0084.1	MA0084.1	0.182
MA0087.1	MA0087.1	0.256
MA0088.1	MA0088.1	0.497
MA0090.1	MA0090.1	0.0328
MA0091.1	MA0091.1	0.542
MA0092.1	MA0092.1	0.745
MA0093.1	MA0093.1	0.641
MA0099.2	MA0099.2	0.135
MA0100.1	MA0100.1	0.742
MA0101.1	MA0101.1	0.0479
MA0102.2	MA0102.2	0.572
MA0103.1	MA0103.1	4.30793e-5
MA0104.2	MA0104.2	0.127
MA0105.1	MA0105.1	5.40366e-8
MA0106.1	MA0106.1	0.14
MA0107.1	MA0107.1	0.0142
MA0108.2	MA0108.2	0.00258
MA0111.1	MA0111.1	0.509
MA0112.2	MA0112.2	5.3793e-4
MA0113.1	MA0113.1	0.298
MA0114.1	MA0114.1	0.0209
MA0115.1	MA0115.1	0.113
MA0116.1	MA0116.1	1.09335e-4
MA0117.1	MA0117.1	0.737
MA0119.1	MA0119.1	0.516
MA0122.1	MA0122.1	0.826
MA0124.1	MA0124.1	0.378
MA0125.1	MA0125.1	0.271
MA0131.1	MA0131.1	0.595
MA0135.1	MA0135.1	0.367
MA0136.1	MA0136.1	0.00485
MA0137.2	MA0137.2	1.66443e-4
MA0138.2	MA0138.2	0.0798
MA0139.1	MA0139.1	0.0225
MA0140.1	MA0140.1	0.238
MA0141.1	MA0141.1	0.0707
MA0142.1	MA0142.1	0.288
MA0143.1	MA0143.1	0.984
MA0144.1	MA0144.1	0.299
MA0145.1	MA0145.1	0.509
MA0146.1	MA0146.1	0.113
MA0147.1	MA0147.1	0.063
MA0148.1	MA0148.1	0.421
MA0149.1	MA0149.1	0.049
MA0150.1	MA0150.1	0.0948
MA0152.1	MA0152.1	0.0487
MA0153.1	MA0153.1	0.0208
MA0154.1	MA0154.1	0.00206
MA0155.1	MA0155.1	0.423
MA0156.1	MA0156.1	0.156
MA0157.1	MA0157.1	0.59
MA0159.1	MA0159.1	0.0552
MA0160.1	MA0160.1	0.131
MA0162.1	MA0162.1	0.228
MA0163.1	MA0163.1	3.606e-6
MA0164.1	MA0164.1	0.389
MA0258.1	MA0258.1	0.00152
MA0259.1	MA0259.1	0.445

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11909

Novel motif	Logo	P-value
1	1	0.0282
10	10	0.0719
100	100	0.203
101	101	0.608
102	102	0.221
103	103	0.543
104	104	0.975
105	105	0.984
106	106	0.028
107	107	0.548
108	108	0.205
109	109	0.0156
11	11	0.0453
110	110	0.126
111	111	0.00874
112	112	0.123
113	113	0.494
114	114	0.0435
115	115	0.311
116	116	0.35
117	117	0.0623
118	118	0.0886
119	119	0.0452
12	12	0.902
120	120	0.199
121	121	0.723
122	122	0.43
123	123	4.96534e-4
124	124	0.247
125	125	0.0104
126	126	0.256
127	127	0.0441
128	128	0.562
129	129	0.39
13	13	0.105
130	130	0.0131
131	131	0.147
132	132	0.962
133	133	0.308
134	134	0.462
135	135	0.771
136	136	0.934
137	137	0.753
138	138	0.148
139	139	0.0129
14	14	0.601
140	140	0.546
141	141	0.671
142	142	0.619
143	143	0.0236
144	144	0.736
145	145	0.286
146	146	0.696
147	147	0.933
148	148	0.168
149	149	0.705
15	15	0.17
150	150	0.372
151	151	0.373
152	152	0.331
153	153	0.459
154	154	0.772
155	155	0.00707
156	156	0.515
157	157	0.632
158	158	0.043
159	159	0.541
16	16	0.289
160	160	0.123
161	161	0.293
162	162	0.829
163	163	0.848
164	164	0.121
165	165	0.816
166	166	0.37
167	167	0.0655
168	168	0.453
169	169	0.049
17	17	0.212
18	18	0.13
19	19	0.642
2	2	0.92
20	20	0.518
21	21	0.359
22	22	0.781
23	23	0.431
24	24	0.735
25	25	0.245
26	26	0.076
27	27	0.514
28	28	0.586
29	29	0.048
3	3	0.266
30	30	0.561
31	31	0.697
32	32	0.535
33	33	0.514
34	34	0.954
35	35	0.113
36	36	0.00967
37	37	0.0779
38	38	0.271
39	39	0.811
4	4	0.0777
40	40	0.0137
41	41	0.554
42	42	0.524
43	43	0.155
44	44	0.086
45	45	0.927
46	46	0.0565
47	47	0.0699
48	48	0.133
49	49	0.0944
5	5	0.734
50	50	0.793
51	51	0.51
52	52	0.874
53	53	0.513
54	54	0.663
55	55	0.777
56	56	0.565
57	57	0.218
58	58	0.155
59	59	0.111
6	6	0.478
60	60	0.15
61	61	0.252
62	62	0.0705
63	63	0.309
64	64	0.0897
65	65	0.185
66	66	0.835
67	67	0.134
68	68	0.992
69	69	0.133
7	7	0.316
70	70	0.00871
71	71	0.0744
72	72	0.897
73	73	0.244
74	74	0.546
75	75	0.0563
76	76	0.349
77	77	0.137
78	78	0.273
79	79	0.386
8	8	0.124
80	80	0.972
81	81	0.378
82	82	0.0636
83	83	0.556
84	84	0.563
85	85	0.124
86	86	0.722
87	87	0.981
88	88	0.926
89	89	0.308
9	9	0.973
90	90	0.512
91	91	0.707
92	92	0.389
93	93	0.367
94	94	0.0354
95	95	0.0142
96	96	0.239
97	97	0.401
98	98	0.0944
99	99	0.547

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11909

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000059 human cardiac fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000948,UBERON:0001009,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003084,UBERON:0003914,UBERON:0004120,UBERON:0004140,UBERON:0004141,UBERON:0004291,UBERON:0004535,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0005498,UBERON:0007005,UBERON:0007100
+|DRA_sample_Accession=CAGE@SAMD00005682
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002494,CL:0002548
+|accession_numbers=CAGE;DRX008246;DRR009118;DRZ000543;DRZ001928;DRZ011893;DRZ013278
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059
 |comment=
 |created_by=tmeehan
 |creation_date=2011-06-15T12:34:29Z
+|data_phase=2
+|datafreeze_phase=2
 |def="A fibroblast from cardiac tissue." [GOC:tfm]
 |expression_enrichment_score=chr7:35293685..35293718,-!p1@TBX20!1.88!75.62!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.85!70.02!GATA4;;chr19:46801639..46801699,+!p1@HIF3A!1.75!55.40!HIF3A;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.97!TCF21;;chr2:19558373..19558392,-!p1@OSR1!1.69!126.66!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.57!36.41!HAND2;;chr1:170632285..170632309,+!p1@PRRX1!1.54!37.97!PRRX1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.52!31.74!PEG3;;chr1:158975744..158975769,+!p10@IFI16!1.51!31.43!IFI16;;chr8:25902876..25902936,-!p1@EBF2!1.40!24.27!EBF2;;chr6:85474299..85474324,-!p1@TBX18!1.38!40.77!TBX18;;chr1:158969752..158969780,+!p6@IFI16!1.37!38.59!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!1.34!37.35!ZFP106;;chr18:19749386..19749404,+!p2@GATA6!1.33!28.63!GATA6;;chr3:12330560..12330579,+!p1@PPARG!1.32!23.03!PPARG;;chr18:19749541..19749557,+!p1@GATA6!1.31!59.44!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.30!48.86!ZFPM2;;chr15:57511609..57511651,+!p2@TCF12!1.28!29.88!TCF12;;chr14:62162285..62162296,+!p3@HIF1A!1.24!83.09!HIF1A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.78!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.21!15.25!EBF3;;chr14:62162258..62162269,+!p2@HIF1A!1.19!137.56!HIF1A;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.32!HAND2;;chr8:49833948..49833973,-!p2@SNAI2!1.18!88.38!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.16!274.80!SNAI2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.07!SIX2;;chrY:2803415..2803468,+!p1@ZFY!1.15!13.07!ZFY;;chr11:32457075..32457095,-!p1@WT1!1.12!12.14!WT1;;chrY:21906594..21906622,-!p1@KDM5D!1.11!11.83!KDM5D;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.86!NR2F1;;chr18:53068911..53068935,-!p4@TCF4!1.07!12.14!TCF4;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.08!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!1.05!11.20!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.58!PRRX1;;chr1:158985493..158985535,+!p4@IFI16!0.99!13.69!IFI16;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.71!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.97!88.07!SOX9;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.45!NFIX;;chr12:66218255..66218304,+!p3@HMGA2!0.95!21.78!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.95!10.27!ZFPM2;;chr9:77112244..77112262,+!p1@RORB!0.95!9.03!RORB;;chr11:113930425..113930471,+!p1@ZBTB16!0.94!11.20!ZBTB16;;chr7:14029283..14029311,-!p1@ETV1!0.93!42.01!ETV1;;chr15:37392724..37392757,-!p1@MEIS2!0.92!34.54!MEIS2;;chr3:12329397..12329433,+!p2@PPARG!0.91!16.81!PPARG;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.56!C11orf9;;chr8:93074803..93074845,-!p1@RUNX1T1!0.91!7.16!RUNX1T1;;chr3:169381420..169381535,-!p1@MECOM!0.89!8.09!MECOM;;chr4:174451350..174451363,-!p3@HAND2!0.89!6.85!HAND2;;chr9:14314522..14314556,-!p3@NFIB!0.87!15.56!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.86!18.98!NFIA;;chr8:116681409..116681431,-!p2@TRPS1!0.86!18.05!TRPS1;;chr5:124082322..124082364,-!p1@ZNF608!0.86!16.81!ZNF608;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.22!PRRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.85!943.59!HIF1A;;chr9:14314566..14314618,-!p1@NFIB!0.85!77.49!NFIB;;chr8:116680215..116680245,-!p6@TRPS1!0.85!9.96!TRPS1;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.09!BCL3;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.47!TBX18;;chr5:158526459..158526481,-!p2@EBF1!0.84!8.09!EBF1;;chr10:63809013..63809041,+!p3@ARID5B!0.83!33.92!ARID5B;;chr7:64023410..64023428,-!p2@ZNF680!0.83!9.34!ZNF680;;chr1:23696448..23696453,-!p5@ZNF436!0.83!7.16!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.81!6.22!ZNF436;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.14!HMGA2;;chr9:14314476..14314487,-!p9@NFIB!0.80!5.29!NFIB;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.81!NFIB;;chr7:19157248..19157268,-!p1@TWIST1!0.78!14.94!TWIST1;;chr2:145277882..145277967,-!p3@ZEB2!0.78!9.03!ZEB2;;chr9:16870659..16870675,-!p2@BNC2!0.78!6.22!BNC2;;chr5:172662197..172662216,-!p1@NKX2-5!0.78!4.98!NKX2-5;;chr8:55370487..55370503,+!p1@SOX17!0.78!4.98!SOX17;;chr8:93074848..93074871,-!p3@RUNX1T1!0.78!4.98!RUNX1T1;;chr19:46800289..46800327,+!p2@HIF3A!0.78!4.98!HIF3A;;chr21:47063625..47063658,+!p1@PCBP3!0.77!23.34!PCBP3;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.40!CREB3L1;;chr2:166326200..166326216,+!p1@CSRNP3!0.76!7.16!CSRNP3;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.65!MEIS2;;chr5:178368186..178368238,+!p1@ZNF454!0.75!8.71!ZNF454;;chr1:170632439..170632465,+!p11@PRRX1!0.75!4.67!PRRX1;;chr2:46524537..46524553,+!p1@EPAS1!0.74!495.14!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.74!65.04!NFIA;;chr8:116681123..116681143,-!p4@TRPS1!0.74!9.34!TRPS1;;chr5:92918956..92918969,+!p4@NR2F1!0.74!4.98!NR2F1;;chr7:17338266..17338282,+!p1@AHR!0.73!52.28!AHR;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.63!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.73!10.27!ARID5B;;chr15:96876966..96877017,+!p12@NR2F2!0.73!6.54!NR2F2;;chr18:19749353..19749367,+!p4@GATA6!0.73!4.36!GATA6;;chr6:144329384..144329405,-!p1@PLAGL1!0.72!55.71!PLAGL1;;chr1:23696308..23696339,-!p2@ZNF436!0.72!9.65!ZNF436;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.60!MEIS2;;chr5:92918894..92918912,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002548;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor4.CNhs11909.11452-119A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11452-119A3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000059;;FF:0000210
+|is_a=EFO:0002091;;FF:0000059
+|is_obsolete=
+|library_id=CNhs11909
+|library_id_phase_based=2:CNhs11909
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11452
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11452
 |name=Fibroblast - Cardiac, donor4
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11909,LSID834,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=119
 |rna_catalog_number=SC6305
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02969244708299e-228!GO:0043226;organelle;4.31029583645084e-181!GO:0005737;cytoplasm;9.26892279919619e-181!GO:0043229;intracellular organelle;9.26892279919619e-181!GO:0043231;intracellular membrane-bound organelle;1.54096195850871e-177!GO:0043227;membrane-bound organelle;2.51457581724038e-177!GO:0044422;organelle part;6.95327754186201e-128!GO:0044446;intracellular organelle part;2.20801320351732e-126!GO:0044444;cytoplasmic part;6.23715668541087e-124!GO:0044238;primary metabolic process;5.116951670088e-84!GO:0005515;protein binding;1.01767127871472e-83!GO:0044237;cellular metabolic process;1.09506282447822e-82!GO:0032991;macromolecular complex;3.73107652208862e-80!GO:0043170;macromolecule metabolic process;7.94933540754367e-76!GO:0005634;nucleus;2.55076848100542e-71!GO:0030529;ribonucleoprotein complex;6.41027909339617e-69!GO:0043233;organelle lumen;2.29879286683226e-67!GO:0031974;membrane-enclosed lumen;2.29879286683226e-67!GO:0044428;nuclear part;1.14857381700907e-65!GO:0003723;RNA binding;1.58641107945711e-65!GO:0005739;mitochondrion;1.03882323277007e-51!GO:0016043;cellular component organization and biogenesis;5.83523980709974e-50!GO:0031090;organelle membrane;5.89553627737299e-48!GO:0019538;protein metabolic process;6.78344592921102e-47!GO:0033036;macromolecule localization;4.75113104537639e-44!GO:0015031;protein transport;2.37638568850827e-43!GO:0043283;biopolymer metabolic process;2.04560818978775e-42!GO:0044260;cellular macromolecule metabolic process;2.73135394522081e-42!GO:0006396;RNA processing;4.39825924037942e-42!GO:0044267;cellular protein metabolic process;3.20967002897695e-41!GO:0043234;protein complex;1.26877055277953e-40!GO:0031981;nuclear lumen;1.80315409964629e-40!GO:0005840;ribosome;2.48947075978113e-40!GO:0008104;protein localization;2.71797590135946e-40!GO:0045184;establishment of protein localization;3.03639702540661e-40!GO:0006412;translation;6.75953597498424e-39!GO:0010467;gene expression;3.94516429633356e-37!GO:0016071;mRNA metabolic process;4.45735567832909e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.61421605263703e-35!GO:0044429;mitochondrial part;6.44784250288619e-35!GO:0003735;structural constituent of ribosome;7.12544245634905e-35!GO:0046907;intracellular transport;7.12544245634905e-35!GO:0031967;organelle envelope;8.59222995511805e-35!GO:0031975;envelope;1.52508158515338e-34!GO:0009058;biosynthetic process;2.36785469530498e-33!GO:0005829;cytosol;5.08651990587259e-33!GO:0008380;RNA splicing;5.64327785186597e-32!GO:0009059;macromolecule biosynthetic process;1.08199095709052e-30!GO:0033279;ribosomal subunit;1.1950951294443e-30!GO:0006397;mRNA processing;1.13290350204651e-29!GO:0006886;intracellular protein transport;1.63586265204047e-29!GO:0065003;macromolecular complex assembly;2.81910920408647e-29!GO:0044249;cellular biosynthetic process;4.45765374254146e-29!GO:0043228;non-membrane-bound organelle;5.00819531461328e-29!GO:0043232;intracellular non-membrane-bound organelle;5.00819531461328e-29!GO:0006996;organelle organization and biogenesis;5.17441051003546e-29!GO:0005654;nucleoplasm;3.74535328335621e-26!GO:0022607;cellular component assembly;5.52855294518102e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.33439804293865e-26!GO:0000166;nucleotide binding;4.97746054866757e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16507777769971e-23!GO:0012505;endomembrane system;6.52046609526585e-23!GO:0005740;mitochondrial envelope;1.66169072116701e-22!GO:0051649;establishment of cellular localization;2.35548936198407e-22!GO:0051641;cellular localization;2.52902224142649e-22!GO:0006259;DNA metabolic process;7.93727078221014e-22!GO:0003676;nucleic acid binding;7.93727078221014e-22!GO:0005681;spliceosome;1.73089028182821e-21!GO:0031966;mitochondrial membrane;2.54569392416873e-21!GO:0044451;nucleoplasm part;3.76445620283795e-21!GO:0005783;endoplasmic reticulum;6.04840847344384e-21!GO:0016462;pyrophosphatase activity;3.17373059611557e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.66210942826277e-20!GO:0019866;organelle inner membrane;5.07453242701392e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;6.1751240714192e-20!GO:0017111;nucleoside-triphosphatase activity;1.2976910231974e-19!GO:0007049;cell cycle;8.47788023816878e-19!GO:0005743;mitochondrial inner membrane;1.60434273428016e-18!GO:0044445;cytosolic part;3.06676621630475e-18!GO:0005794;Golgi apparatus;3.52105149851839e-18!GO:0006457;protein folding;6.68312210987866e-18!GO:0006119;oxidative phosphorylation;1.08721021134218e-17!GO:0044432;endoplasmic reticulum part;1.63355914924087e-17!GO:0048770;pigment granule;3.10663387574996e-17!GO:0042470;melanosome;3.10663387574996e-17!GO:0022618;protein-RNA complex assembly;3.8148009649113e-17!GO:0016070;RNA metabolic process;4.34111788846687e-17!GO:0008134;transcription factor binding;5.07058767293261e-17!GO:0015935;small ribosomal subunit;1.41068050307991e-16!GO:0032553;ribonucleotide binding;1.99372491162598e-16!GO:0032555;purine ribonucleotide binding;1.99372491162598e-16!GO:0017076;purine nucleotide binding;2.1438261755455e-16!GO:0006512;ubiquitin cycle;2.98028913897906e-16!GO:0016874;ligase activity;1.16620975456939e-15!GO:0031980;mitochondrial lumen;1.31897637594893e-15!GO:0005759;mitochondrial matrix;1.31897637594893e-15!GO:0005730;nucleolus;2.09030749247642e-15!GO:0048193;Golgi vesicle transport;2.70054229095643e-15!GO:0044265;cellular macromolecule catabolic process;2.86684500524419e-15!GO:0006605;protein targeting;5.19456709160925e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;5.8270323311369e-15!GO:0015934;large ribosomal subunit;6.32553421498807e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.10825781876083e-14!GO:0019941;modification-dependent protein catabolic process;1.30292483729962e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.30292483729962e-14!GO:0008135;translation factor activity, nucleic acid binding;1.43723706367396e-14!GO:0044257;cellular protein catabolic process;1.76959898694272e-14!GO:0043285;biopolymer catabolic process;2.53867223063766e-14!GO:0044455;mitochondrial membrane part;2.56901566598885e-14!GO:0016192;vesicle-mediated transport;3.4923234801882e-14!GO:0000278;mitotic cell cycle;1.03692674313255e-13!GO:0043412;biopolymer modification;1.24228516586359e-13!GO:0022402;cell cycle process;1.26885245547207e-13!GO:0051186;cofactor metabolic process;3.23069747084273e-13!GO:0005635;nuclear envelope;5.56864002325531e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.19743790950446e-13!GO:0009057;macromolecule catabolic process;8.08594690812336e-13!GO:0005524;ATP binding;8.41285320683655e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.41285320683655e-13!GO:0032559;adenyl ribonucleotide binding;1.03967100444114e-12!GO:0030163;protein catabolic process;1.37653136505824e-12!GO:0030554;adenyl nucleotide binding;1.50662240809905e-12!GO:0005746;mitochondrial respiratory chain;1.99520906360113e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.23163889091434e-12!GO:0044248;cellular catabolic process;2.30415742420363e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.92104635438172e-12!GO:0005793;ER-Golgi intermediate compartment;3.3391170162058e-12!GO:0006464;protein modification process;3.35402661741191e-12!GO:0016604;nuclear body;4.82849770116504e-12!GO:0031965;nuclear membrane;6.42076547965956e-12!GO:0003743;translation initiation factor activity;6.89268416605901e-12!GO:0051082;unfolded protein binding;8.05230704370108e-12!GO:0006974;response to DNA damage stimulus;1.01138349172284e-11!GO:0005789;endoplasmic reticulum membrane;1.01138349172284e-11!GO:0006413;translational initiation;2.34793543786205e-11!GO:0050136;NADH dehydrogenase (quinone) activity;3.01956785954815e-11!GO:0003954;NADH dehydrogenase activity;3.01956785954815e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.01956785954815e-11!GO:0003712;transcription cofactor activity;3.50717424945273e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.59842419485608e-11!GO:0000375;RNA splicing, via transesterification reactions;3.59842419485608e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.59842419485608e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.2295970163877e-11!GO:0050794;regulation of cellular process;6.76112177098561e-11!GO:0006913;nucleocytoplasmic transport;8.31453491515454e-11!GO:0005761;mitochondrial ribosome;8.38794720354794e-11!GO:0000313;organellar ribosome;8.38794720354794e-11!GO:0043687;post-translational protein modification;8.38794720354794e-11!GO:0051276;chromosome organization and biogenesis;9.62578558217439e-11!GO:0006732;coenzyme metabolic process;1.12751846775014e-10!GO:0008565;protein transporter activity;1.40240902754586e-10!GO:0051169;nuclear transport;1.84003313055478e-10!GO:0044453;nuclear membrane part;1.90663345648685e-10!GO:0006446;regulation of translational initiation;2.24320080227648e-10!GO:0006366;transcription from RNA polymerase II promoter;2.31817612514535e-10!GO:0004386;helicase activity;2.54340125885426e-10!GO:0048523;negative regulation of cellular process;3.24884935807588e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.54489872487464e-10!GO:0042773;ATP synthesis coupled electron transport;3.54489872487464e-10!GO:0016887;ATPase activity;3.55863104472092e-10!GO:0016607;nuclear speck;4.43385657047998e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.66597885380771e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.91110742772875e-10!GO:0045271;respiratory chain complex I;8.91110742772875e-10!GO:0005747;mitochondrial respiratory chain complex I;8.91110742772875e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;8.97918988760022e-10!GO:0000087;M phase of mitotic cell cycle;1.47450591002244e-09!GO:0042254;ribosome biogenesis and assembly;1.71892920964879e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.74149867103979e-09!GO:0042623;ATPase activity, coupled;2.5017000819595e-09!GO:0007067;mitosis;2.5198312187078e-09!GO:0051301;cell division;2.71581687635287e-09!GO:0008639;small protein conjugating enzyme activity;2.73515823890778e-09!GO:0006281;DNA repair;2.73947836445689e-09!GO:0006323;DNA packaging;3.05098522004796e-09!GO:0012501;programmed cell death;3.13041533407283e-09!GO:0005694;chromosome;4.23014924345261e-09!GO:0004842;ubiquitin-protein ligase activity;4.50332456092677e-09!GO:0022403;cell cycle phase;5.4283312739147e-09!GO:0006461;protein complex assembly;5.692203111258e-09!GO:0009719;response to endogenous stimulus;6.0906165781113e-09!GO:0006915;apoptosis;6.34779245098469e-09!GO:0019787;small conjugating protein ligase activity;8.27982365122772e-09!GO:0050789;regulation of biological process;9.86656386465688e-09!GO:0000074;regulation of progression through cell cycle;1.28384327370076e-08!GO:0051726;regulation of cell cycle;1.36659191855366e-08!GO:0048519;negative regulation of biological process;1.3882421199613e-08!GO:0005788;endoplasmic reticulum lumen;1.54966503686196e-08!GO:0008219;cell death;1.80235704926229e-08!GO:0016265;death;1.80235704926229e-08!GO:0008026;ATP-dependent helicase activity;1.82098226038754e-08!GO:0005643;nuclear pore;1.91044183653631e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.02849361021767e-08!GO:0009259;ribonucleotide metabolic process;2.24723456040697e-08!GO:0003924;GTPase activity;2.39680546643377e-08!GO:0006403;RNA localization;2.75704956659361e-08!GO:0017038;protein import;2.79890766458531e-08!GO:0006163;purine nucleotide metabolic process;2.86458269756327e-08!GO:0050657;nucleic acid transport;2.8974018324484e-08!GO:0051236;establishment of RNA localization;2.8974018324484e-08!GO:0050658;RNA transport;2.8974018324484e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.83978046556954e-08!GO:0046930;pore complex;5.11908464016116e-08!GO:0045333;cellular respiration;5.62567083414779e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.73586838775297e-08!GO:0009150;purine ribonucleotide metabolic process;6.06935126885675e-08!GO:0044431;Golgi apparatus part;6.37881395024102e-08!GO:0009060;aerobic respiration;6.76011518813743e-08!GO:0044427;chromosomal part;8.09484228452455e-08!GO:0065002;intracellular protein transport across a membrane;8.41149758959281e-08!GO:0048475;coated membrane;8.57150918390617e-08!GO:0030117;membrane coat;8.57150918390617e-08!GO:0030120;vesicle coat;1.07186882890826e-07!GO:0030662;coated vesicle membrane;1.07186882890826e-07!GO:0009056;catabolic process;1.25229802720531e-07!GO:0016881;acid-amino acid ligase activity;1.36266392269869e-07!GO:0006260;DNA replication;1.451199787329e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46599898610359e-07!GO:0006164;purine nucleotide biosynthetic process;1.87515016436523e-07!GO:0009055;electron carrier activity;2.80920692656755e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.02400054622102e-07!GO:0065004;protein-DNA complex assembly;3.67255689681227e-07!GO:0005768;endosome;3.74108348141384e-07!GO:0009141;nucleoside triphosphate metabolic process;3.79250293769028e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.03284899099116e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.05997617441533e-07!GO:0009260;ribonucleotide biosynthetic process;4.16488713392086e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.35390307363813e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.35390307363813e-07!GO:0043566;structure-specific DNA binding;4.38005934834762e-07!GO:0006399;tRNA metabolic process;4.64358453753563e-07!GO:0051246;regulation of protein metabolic process;5.16682367237463e-07!GO:0015986;ATP synthesis coupled proton transport;5.70998824718222e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.70998824718222e-07!GO:0031252;leading edge;5.90977932215934e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.36930817020348e-07!GO:0015630;microtubule cytoskeleton;8.16796421699429e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.78182175624858e-07!GO:0004812;aminoacyl-tRNA ligase activity;8.78182175624858e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.78182175624858e-07!GO:0031324;negative regulation of cellular metabolic process;1.07492975405641e-06!GO:0000279;M phase;1.08453262332806e-06!GO:0006333;chromatin assembly or disassembly;1.08453262332806e-06!GO:0051028;mRNA transport;1.1256719941364e-06!GO:0043038;amino acid activation;1.35403959812847e-06!GO:0006418;tRNA aminoacylation for protein translation;1.35403959812847e-06!GO:0043039;tRNA aminoacylation;1.35403959812847e-06!GO:0046034;ATP metabolic process;1.35618515003475e-06!GO:0006099;tricarboxylic acid cycle;1.41178047430783e-06!GO:0046356;acetyl-CoA catabolic process;1.41178047430783e-06!GO:0051170;nuclear import;1.46723104179808e-06!GO:0016568;chromatin modification;1.50088298937712e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.58773723958575e-06!GO:0003697;single-stranded DNA binding;1.61602427845609e-06!GO:0009109;coenzyme catabolic process;1.69057555677126e-06!GO:0006793;phosphorus metabolic process;1.71743180084197e-06!GO:0006796;phosphate metabolic process;1.71743180084197e-06!GO:0019829;cation-transporting ATPase activity;1.83599963495628e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.099242327461e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.099242327461e-06!GO:0006606;protein import into nucleus;2.26323318560325e-06!GO:0005667;transcription factor complex;2.33473304409637e-06!GO:0051187;cofactor catabolic process;2.45095049934061e-06!GO:0016564;transcription repressor activity;2.53381640634885e-06!GO:0051188;cofactor biosynthetic process;2.63034967058602e-06!GO:0030029;actin filament-based process;2.9427425607345e-06!GO:0016853;isomerase activity;2.94408924382983e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.01085094067111e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.01085094067111e-06!GO:0016310;phosphorylation;3.19040832816966e-06!GO:0006084;acetyl-CoA metabolic process;3.36238170499672e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.52629717615363e-06!GO:0005525;GTP binding;3.89899667993166e-06!GO:0016491;oxidoreductase activity;4.3369840030235e-06!GO:0043069;negative regulation of programmed cell death;4.38740039019337e-06!GO:0000151;ubiquitin ligase complex;5.04110202861565e-06!GO:0031988;membrane-bound vesicle;5.16426232513863e-06!GO:0005798;Golgi-associated vesicle;5.36450849495635e-06!GO:0006364;rRNA processing;5.70706225644793e-06!GO:0043066;negative regulation of apoptosis;5.86894062476391e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.40890307555599e-06!GO:0006613;cotranslational protein targeting to membrane;6.59703627984649e-06!GO:0016740;transferase activity;6.74587233969447e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.75213391642013e-06!GO:0008654;phospholipid biosynthetic process;6.93065489913548e-06!GO:0003713;transcription coactivator activity;6.97145240902773e-06!GO:0009117;nucleotide metabolic process;7.09194808327781e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.44231616924592e-06!GO:0044440;endosomal part;7.52365438343632e-06!GO:0010008;endosome membrane;7.52365438343632e-06!GO:0032446;protein modification by small protein conjugation;7.53655445912309e-06!GO:0000139;Golgi membrane;8.26372009815611e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.26372009815611e-06!GO:0016563;transcription activator activity;8.30383830814438e-06!GO:0006754;ATP biosynthetic process;8.44780766178127e-06!GO:0006753;nucleoside phosphate metabolic process;8.44780766178127e-06!GO:0016859;cis-trans isomerase activity;9.0527810299386e-06!GO:0007010;cytoskeleton organization and biogenesis;9.24909908062101e-06!GO:0000785;chromatin;9.40432831614164e-06!GO:0009892;negative regulation of metabolic process;9.54304362584658e-06!GO:0006916;anti-apoptosis;9.63153697978172e-06!GO:0016567;protein ubiquitination;1.00895505583895e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.02259499598324e-05!GO:0005813;centrosome;1.05184769869185e-05!GO:0000245;spliceosome assembly;1.18419696250484e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.18464997177512e-05!GO:0016072;rRNA metabolic process;1.19855925159375e-05!GO:0031982;vesicle;1.41475971267382e-05!GO:0003724;RNA helicase activity;1.41525457810008e-05!GO:0045786;negative regulation of progression through cell cycle;1.49159355716959e-05!GO:0003714;transcription corepressor activity;1.70743139189301e-05!GO:0032561;guanyl ribonucleotide binding;1.79738332818033e-05!GO:0019001;guanyl nucleotide binding;1.79738332818033e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.86114264929365e-05!GO:0016787;hydrolase activity;1.93813913548744e-05!GO:0031410;cytoplasmic vesicle;1.97116173026705e-05!GO:0042981;regulation of apoptosis;1.9806070056689e-05!GO:0065007;biological regulation;2.13088326018808e-05!GO:0016481;negative regulation of transcription;2.17268530505798e-05!GO:0043067;regulation of programmed cell death;2.34394428089779e-05!GO:0019222;regulation of metabolic process;2.56847959537553e-05!GO:0043623;cellular protein complex assembly;2.63931824129598e-05!GO:0008092;cytoskeletal protein binding;2.72045871326678e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.22673808788279e-05!GO:0045259;proton-transporting ATP synthase complex;3.23699163724699e-05!GO:0005773;vacuole;3.45897948402216e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.5730812491637e-05!GO:0030867;rough endoplasmic reticulum membrane;3.68731026708791e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.78592864927612e-05!GO:0005815;microtubule organizing center;3.84718267304818e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.85135660581658e-05!GO:0009108;coenzyme biosynthetic process;3.88291917724956e-05!GO:0005770;late endosome;4.30441348813128e-05!GO:0005791;rough endoplasmic reticulum;4.34924968031487e-05!GO:0031968;organelle outer membrane;4.47650246563946e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71323099399008e-05!GO:0016779;nucleotidyltransferase activity;5.22955291602229e-05!GO:0019899;enzyme binding;5.28962691247214e-05!GO:0006752;group transfer coenzyme metabolic process;6.15161029753645e-05!GO:0019867;outer membrane;6.45542173877974e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.31010292173463e-05!GO:0051427;hormone receptor binding;7.56956910993102e-05!GO:0051789;response to protein stimulus;9.87537854176265e-05!GO:0006986;response to unfolded protein;9.87537854176265e-05!GO:0006612;protein targeting to membrane;9.95806813733345e-05!GO:0008361;regulation of cell size;9.9742695295007e-05!GO:0005769;early endosome;0.000125049381497679!GO:0051329;interphase of mitotic cell cycle;0.000140057311215353!GO:0004298;threonine endopeptidase activity;0.00014208819327262!GO:0035257;nuclear hormone receptor binding;0.000146868360913781!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000153559125237001!GO:0016049;cell growth;0.000153559125237001!GO:0000323;lytic vacuole;0.000156372288133056!GO:0005764;lysosome;0.000156372288133056!GO:0048522;positive regulation of cellular process;0.000157576477429686!GO:0005048;signal sequence binding;0.000160225294073481!GO:0005741;mitochondrial outer membrane;0.000197718830716072!GO:0007005;mitochondrion organization and biogenesis;0.000199792579021563!GO:0006334;nucleosome assembly;0.000199815594129804!GO:0006091;generation of precursor metabolites and energy;0.000213222251913856!GO:0007264;small GTPase mediated signal transduction;0.000222170031490853!GO:0016126;sterol biosynthetic process;0.000289117409064429!GO:0005819;spindle;0.000291313666796998!GO:0019843;rRNA binding;0.000310461789149473!GO:0030133;transport vesicle;0.000325128338517477!GO:0031497;chromatin assembly;0.000341253633558274!GO:0030027;lamellipodium;0.000354028891899287!GO:0003690;double-stranded DNA binding;0.000398500720146833!GO:0008186;RNA-dependent ATPase activity;0.000404745390237724!GO:0043021;ribonucleoprotein binding;0.000404745390237724!GO:0051325;interphase;0.000419190576353266!GO:0005885;Arp2/3 protein complex;0.000422356256606642!GO:0045454;cell redox homeostasis;0.000468971031186766!GO:0051252;regulation of RNA metabolic process;0.000470678433312823!GO:0008250;oligosaccharyl transferase complex;0.000475491071534736!GO:0033116;ER-Golgi intermediate compartment membrane;0.000475491071534736!GO:0046474;glycerophospholipid biosynthetic process;0.000486367740070658!GO:0001558;regulation of cell growth;0.000517011028791175!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000523952677211009!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000529241569019216!GO:0016044;membrane organization and biogenesis;0.000580766825234083!GO:0005905;coated pit;0.000596212233043006!GO:0006402;mRNA catabolic process;0.000627871138886235!GO:0030663;COPI coated vesicle membrane;0.000657494137453701!GO:0030126;COPI vesicle coat;0.000657494137453701!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000670705485534544!GO:0007243;protein kinase cascade;0.000686602299675263!GO:0004576;oligosaccharyl transferase activity;0.000686602299675263!GO:0051168;nuclear export;0.000744099000854485!GO:0003729;mRNA binding;0.000749885270266025!GO:0005762;mitochondrial large ribosomal subunit;0.000767992791197702!GO:0000315;organellar large ribosomal subunit;0.000767992791197702!GO:0045893;positive regulation of transcription, DNA-dependent;0.000823244253834725!GO:0006891;intra-Golgi vesicle-mediated transport;0.000868816750411571!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000882415394427343!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000889207658848023!GO:0000059;protein import into nucleus, docking;0.000976393242523745!GO:0008610;lipid biosynthetic process;0.000991139921083675!GO:0003682;chromatin binding;0.00103509413946466!GO:0030137;COPI-coated vesicle;0.00111677496463485!GO:0004004;ATP-dependent RNA helicase activity;0.00115586870650776!GO:0051920;peroxiredoxin activity;0.00118832330779836!GO:0004674;protein serine/threonine kinase activity;0.00127504244436302!GO:0045892;negative regulation of transcription, DNA-dependent;0.00141275848457595!GO:0018196;peptidyl-asparagine modification;0.00147514855192351!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00147514855192351!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0015502646020329!GO:0044262;cellular carbohydrate metabolic process;0.00155869363184261!GO:0030134;ER to Golgi transport vesicle;0.00155869363184261!GO:0030041;actin filament polymerization;0.00158106832056585!GO:0006950;response to stress;0.00159988173497364!GO:0045941;positive regulation of transcription;0.00166946284686726!GO:0007051;spindle organization and biogenesis;0.00168535834569811!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00175401693766609!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00184754401908023!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00184754401908023!GO:0016363;nuclear matrix;0.00185239412515577!GO:0046489;phosphoinositide biosynthetic process;0.0018727452904601!GO:0009165;nucleotide biosynthetic process;0.00190334778196577!GO:0035258;steroid hormone receptor binding;0.00192776682471668!GO:0048471;perinuclear region of cytoplasm;0.00213387073103509!GO:0048500;signal recognition particle;0.00213507895260929!GO:0006695;cholesterol biosynthetic process;0.00215081748319862!GO:0030521;androgen receptor signaling pathway;0.00223851950038162!GO:0008047;enzyme activator activity;0.00227050018289716!GO:0043488;regulation of mRNA stability;0.00228716335636446!GO:0043487;regulation of RNA stability;0.00228716335636446!GO:0030127;COPII vesicle coat;0.00232527876314169!GO:0012507;ER to Golgi transport vesicle membrane;0.00232527876314169!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00234221232998471!GO:0000314;organellar small ribosomal subunit;0.00235443711174889!GO:0005763;mitochondrial small ribosomal subunit;0.00235443711174889!GO:0003899;DNA-directed RNA polymerase activity;0.00239677432492325!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00255590329671035!GO:0031072;heat shock protein binding;0.00255590329671035!GO:0031323;regulation of cellular metabolic process;0.00268784145542795!GO:0051128;regulation of cellular component organization and biogenesis;0.00277580312479971!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00301885616290349!GO:0046467;membrane lipid biosynthetic process;0.0030541216709863!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00309932327105974!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00309932327105974!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00309932327105974!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00323035231937852!GO:0030658;transport vesicle membrane;0.0032390226340481!GO:0008154;actin polymerization and/or depolymerization;0.00332564036580241!GO:0001726;ruffle;0.00334597950806758!GO:0006352;transcription initiation;0.00343957999503942!GO:0000075;cell cycle checkpoint;0.00350281137905155!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00350281137905155!GO:0006892;post-Golgi vesicle-mediated transport;0.00354568311557911!GO:0016197;endosome transport;0.00382448626293094!GO:0033673;negative regulation of kinase activity;0.00405743730724682!GO:0006469;negative regulation of protein kinase activity;0.00405743730724682!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0042064202207771!GO:0032984;macromolecular complex disassembly;0.00454734076868!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00462015760433402!GO:0045047;protein targeting to ER;0.00462015760433402!GO:0030176;integral to endoplasmic reticulum membrane;0.00463332825324515!GO:0007050;cell cycle arrest;0.00476878659017314!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00477701620507755!GO:0008180;signalosome;0.00494395936319238!GO:0030118;clathrin coat;0.00500076713927675!GO:0016251;general RNA polymerase II transcription factor activity;0.00514172608628759!GO:0006979;response to oxidative stress;0.0051944272669265!GO:0006414;translational elongation;0.00527559024007385!GO:0008139;nuclear localization sequence binding;0.00533609963778397!GO:0051287;NAD binding;0.00535407527569376!GO:0031901;early endosome membrane;0.00537285688142571!GO:0030132;clathrin coat of coated pit;0.0054557576878486!GO:0006261;DNA-dependent DNA replication;0.00551800947641632!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00560745926414619!GO:0030384;phosphoinositide metabolic process;0.00560745926414619!GO:0004177;aminopeptidase activity;0.00599479170293353!GO:0043681;protein import into mitochondrion;0.00610435757263039!GO:0006302;double-strand break repair;0.00617195933001485!GO:0045045;secretory pathway;0.00617203779303013!GO:0006383;transcription from RNA polymerase III promoter;0.00621035439171777!GO:0048518;positive regulation of biological process;0.00621744959819572!GO:0017166;vinculin binding;0.00621744959819572!GO:0051348;negative regulation of transferase activity;0.00645679021639064!GO:0030518;steroid hormone receptor signaling pathway;0.00647550776263978!GO:0005096;GTPase activator activity;0.00668037652954259!GO:0003702;RNA polymerase II transcription factor activity;0.00668459788728518!GO:0000776;kinetochore;0.00678537861680352!GO:0050662;coenzyme binding;0.00687713441214197!GO:0065009;regulation of a molecular function;0.00691583010055337!GO:0016408;C-acyltransferase activity;0.00691652249639952!GO:0007265;Ras protein signal transduction;0.00720273050694084!GO:0006350;transcription;0.00727785495144133!GO:0006650;glycerophospholipid metabolic process;0.00732314535621101!GO:0015631;tubulin binding;0.00777929146721307!GO:0000775;chromosome, pericentric region;0.00782258452040532!GO:0003711;transcription elongation regulator activity;0.00791041623878087!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00810740357744601!GO:0008312;7S RNA binding;0.00815316009747194!GO:0051087;chaperone binding;0.00815316009747194!GO:0050681;androgen receptor binding;0.00832704770748062!GO:0044452;nucleolar part;0.00849557342788537!GO:0031124;mRNA 3'-end processing;0.00888648518616427!GO:0005586;collagen type III;0.00909595310383806!GO:0043241;protein complex disassembly;0.00909787927156531!GO:0031625;ubiquitin protein ligase binding;0.00910813994267862!GO:0005100;Rho GTPase activator activity;0.00919987372515063!GO:0030660;Golgi-associated vesicle membrane;0.00937985338201253!GO:0003779;actin binding;0.00938079163449297!GO:0030880;RNA polymerase complex;0.00943076907290446!GO:0048487;beta-tubulin binding;0.00945266214033133!GO:0006607;NLS-bearing substrate import into nucleus;0.00964567814912787!GO:0030659;cytoplasmic vesicle membrane;0.00964567814912787!GO:0006897;endocytosis;0.00964567814912787!GO:0010324;membrane invagination;0.00964567814912787!GO:0006401;RNA catabolic process;0.00982038122987388!GO:0006626;protein targeting to mitochondrion;0.010654240136143!GO:0000082;G1/S transition of mitotic cell cycle;0.0106850447822844!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0109506033936647!GO:0033043;regulation of organelle organization and biogenesis;0.0109506033936647!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0109681394099643!GO:0006509;membrane protein ectodomain proteolysis;0.0115114517783603!GO:0033619;membrane protein proteolysis;0.0115114517783603!GO:0008094;DNA-dependent ATPase activity;0.0115334304985596!GO:0030833;regulation of actin filament polymerization;0.0116592179553196!GO:0007052;mitotic spindle organization and biogenesis;0.0116637999517442!GO:0042802;identical protein binding;0.0119315872788807!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0122179795382053!GO:0005869;dynactin complex;0.0122438215941273!GO:0016584;nucleosome positioning;0.0123501590865016!GO:0007006;mitochondrial membrane organization and biogenesis;0.0123723074040793!GO:0000339;RNA cap binding;0.0127390068807087!GO:0051052;regulation of DNA metabolic process;0.0128842139845795!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0134029716949875!GO:0006740;NADPH regeneration;0.0141193329788171!GO:0006098;pentose-phosphate shunt;0.0141193329788171!GO:0008286;insulin receptor signaling pathway;0.0146667115838913!GO:0031123;RNA 3'-end processing;0.015009880250388!GO:0010468;regulation of gene expression;0.0154371678870594!GO:0043624;cellular protein complex disassembly;0.0156065941828767!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0156501973958859!GO:0015399;primary active transmembrane transporter activity;0.0156501973958859!GO:0005862;muscle thin filament tropomyosin;0.0166274115079797!GO:0030119;AP-type membrane coat adaptor complex;0.0172226028125855!GO:0006338;chromatin remodeling;0.0172457271136673!GO:0003678;DNA helicase activity;0.0173231600585036!GO:0043284;biopolymer biosynthetic process;0.0177848413188545!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178697415879806!GO:0000428;DNA-directed RNA polymerase complex;0.0178697415879806!GO:0042158;lipoprotein biosynthetic process;0.0179919343549448!GO:0005832;chaperonin-containing T-complex;0.018718783133669!GO:0006595;polyamine metabolic process;0.0195051906467918!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0197840156439355!GO:0000049;tRNA binding;0.0201816229587353!GO:0044433;cytoplasmic vesicle part;0.0208753180877782!GO:0003684;damaged DNA binding;0.0215313660783034!GO:0006405;RNA export from nucleus;0.0215313660783034!GO:0051101;regulation of DNA binding;0.021563591842208!GO:0006506;GPI anchor biosynthetic process;0.0220792724654219!GO:0005637;nuclear inner membrane;0.0221468013312987!GO:0040008;regulation of growth;0.0224946484116222!GO:0019752;carboxylic acid metabolic process;0.0229562612930263!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0230330570327781!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0230330570327781!GO:0007034;vacuolar transport;0.0231089752530403!GO:0035035;histone acetyltransferase binding;0.0232668065554484!GO:0006505;GPI anchor metabolic process;0.0232928271982364!GO:0006497;protein amino acid lipidation;0.0234781987600537!GO:0005801;cis-Golgi network;0.023763195935439!GO:0005669;transcription factor TFIID complex;0.0238906641057236!GO:0000209;protein polyubiquitination;0.0239133410107245!GO:0031902;late endosome membrane;0.0247100513074668!GO:0043407;negative regulation of MAP kinase activity;0.0247100513074668!GO:0030522;intracellular receptor-mediated signaling pathway;0.0247693883091118!GO:0005581;collagen;0.0248195166575029!GO:0008147;structural constituent of bone;0.0250055417790257!GO:0006082;organic acid metabolic process;0.0250655020695222!GO:0009967;positive regulation of signal transduction;0.026027045123833!GO:0051270;regulation of cell motility;0.026027045123833!GO:0005874;microtubule;0.0260283531675453!GO:0012506;vesicle membrane;0.0264547152938935!GO:0046483;heterocycle metabolic process;0.0265219548771424!GO:0001952;regulation of cell-matrix adhesion;0.0266246760354468!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0270959620904662!GO:0007093;mitotic cell cycle checkpoint;0.0271244868119438!GO:0005083;small GTPase regulator activity;0.0272610896047983!GO:0006289;nucleotide-excision repair;0.0278364444420089!GO:0006376;mRNA splice site selection;0.0278364444420089!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0278364444420089!GO:0031529;ruffle organization and biogenesis;0.0279071475745981!GO:0030131;clathrin adaptor complex;0.0281822890484463!GO:0006310;DNA recombination;0.0282513680989048!GO:0030032;lamellipodium biogenesis;0.0282513680989048!GO:0043022;ribosome binding;0.0284249310955559!GO:0000096;sulfur amino acid metabolic process;0.0286596894316465!GO:0009112;nucleobase metabolic process;0.0288030157168584!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0288761984396683!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0289675144353293!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0289675144353293!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0294149576352549!GO:0022408;negative regulation of cell-cell adhesion;0.0294550844896965!GO:0006839;mitochondrial transport;0.0297249617541891!GO:0031272;regulation of pseudopodium formation;0.0303153188233449!GO:0031269;pseudopodium formation;0.0303153188233449!GO:0031344;regulation of cell projection organization and biogenesis;0.0303153188233449!GO:0031268;pseudopodium organization and biogenesis;0.0303153188233449!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0303153188233449!GO:0031274;positive regulation of pseudopodium formation;0.0303153188233449!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0303687234572164!GO:0007040;lysosome organization and biogenesis;0.0306857896423303!GO:0006611;protein export from nucleus;0.0307073033029455!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0309779044255641!GO:0015002;heme-copper terminal oxidase activity;0.0309779044255641!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0309779044255641!GO:0004129;cytochrome-c oxidase activity;0.0309779044255641!GO:0051539;4 iron, 4 sulfur cluster binding;0.0311786597007896!GO:0047485;protein N-terminus binding;0.031223348876078!GO:0015036;disulfide oxidoreductase activity;0.0315972452383043!GO:0003746;translation elongation factor activity;0.0316158720871846!GO:0006790;sulfur metabolic process;0.0326415734681435!GO:0005606;laminin-1 complex;0.0326415734681435!GO:0016301;kinase activity;0.0326415734681435!GO:0008168;methyltransferase activity;0.0327270304118384!GO:0009081;branched chain family amino acid metabolic process;0.0332532177655817!GO:0022415;viral reproductive process;0.0334970450438808!GO:0005657;replication fork;0.0337922902603628!GO:0005099;Ras GTPase activator activity;0.034179341769174!GO:0006635;fatty acid beta-oxidation;0.0342426306511166!GO:0003756;protein disulfide isomerase activity;0.0344831746497738!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0344831746497738!GO:0045792;negative regulation of cell size;0.0346744337378393!GO:0008097;5S rRNA binding;0.0349977624185769!GO:0022890;inorganic cation transmembrane transporter activity;0.0355008102098322!GO:0016741;transferase activity, transferring one-carbon groups;0.0356074848403121!GO:0016860;intramolecular oxidoreductase activity;0.0363788986466592!GO:0005684;U2-dependent spliceosome;0.0366674405133827!GO:0001872;zymosan binding;0.0366674405133827!GO:0001878;response to yeast;0.0366674405133827!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0371006334018111!GO:0015992;proton transport;0.0371235900723872!GO:0005784;translocon complex;0.0375318743801956!GO:0006643;membrane lipid metabolic process;0.0381016779540685!GO:0006818;hydrogen transport;0.039320459712367!GO:0008033;tRNA processing;0.0394271432046038!GO:0000910;cytokinesis;0.0399422305492784!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0399706176642306!GO:0007033;vacuole organization and biogenesis;0.0403846642487687!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0407491346545286!GO:0048468;cell development;0.0409662789193808!GO:0006984;ER-nuclear signaling pathway;0.0416415347889794!GO:0000786;nucleosome;0.0416481908651463!GO:0006739;NADP metabolic process;0.0420732530883025!GO:0033559;unsaturated fatty acid metabolic process;0.0421037857273428!GO:0006636;unsaturated fatty acid biosynthetic process;0.0421037857273428!GO:0051271;negative regulation of cell motility;0.0425268254306457!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0425268254306457!GO:0030125;clathrin vesicle coat;0.0425268254306457!GO:0030665;clathrin coated vesicle membrane;0.0425268254306457!GO:0032508;DNA duplex unwinding;0.0425268254306457!GO:0032392;DNA geometric change;0.0425268254306457!GO:0044420;extracellular matrix part;0.0425870901356036!GO:0031418;L-ascorbic acid binding;0.0428515326213518!GO:0006378;mRNA polyadenylation;0.0430260519901365!GO:0001953;negative regulation of cell-matrix adhesion;0.043323532451277!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0434097683232714!GO:0001527;microfibril;0.0434672386215243!GO:0008234;cysteine-type peptidase activity;0.0442163607003241!GO:0008022;protein C-terminus binding;0.0444856927765672!GO:0032940;secretion by cell;0.0444856927765672!GO:0044255;cellular lipid metabolic process;0.0444937072324956!GO:0000792;heterochromatin;0.0452322976573025!GO:0051098;regulation of binding;0.0453902629444075!GO:0030308;negative regulation of cell growth;0.0458113687869036!GO:0050811;GABA receptor binding;0.0458625924125093!GO:0006144;purine base metabolic process;0.0465825364676802!GO:0032200;telomere organization and biogenesis;0.0467014105859735!GO:0000723;telomere maintenance;0.0467014105859735!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0467890320504229!GO:0043087;regulation of GTPase activity;0.0471252335199773!GO:0016125;sterol metabolic process;0.0471928048520588!GO:0040029;regulation of gene expression, epigenetic;0.0476521454398323!GO:0043492;ATPase activity, coupled to movement of substances;0.0481277255572653!GO:0009303;rRNA transcription;0.0491899796468074!GO:0030508;thiol-disulfide exchange intermediate activity;0.049714611904957!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0497375366027276!GO:0006672;ceramide metabolic process;0.0497390205942645!GO:0031589;cell-substrate adhesion;0.0497390205942645!GO:0008218;bioluminescence;0.0499317599120199!GO:0007088;regulation of mitosis;0.0499317599120199!GO:0050749;apolipoprotein E receptor binding;0.0499317599120199
 |sample_id=11452
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=heart
 |top_motifs=MYBL2:1.77810710407;TFAP4:1.40376881754;STAT1,3:1.38469538003;ZNF238:1.35001564341;PATZ1:1.31261933246;TLX1..3_NFIC{dimer}:1.27174157031;XBP1:1.26736941677;NFATC1..3:1.22123010901;HOX{A5,B5}:1.18748856566;MAZ:1.13442666469;AR:1.10021043661;NR3C1:1.07410449316;NKX2-2,8:1.05302429436;MZF1:0.981745534573;IKZF1:0.959903076646;NKX3-1:0.92215716956;RXR{A,B,G}:0.92058428266;GTF2I:0.91801906978;GFI1B:0.906392259537;TEAD1:0.86934871376;SMAD1..7,9:0.863175408024;FOXA2:0.844999921637;ADNP_IRX_SIX_ZHX:0.835075165023;LEF1_TCF7_TCF7L1,2:0.814643579336;PAX5:0.77776474724;EBF1:0.776726702957;GFI1:0.775919265882;HIC1:0.767522135555;GTF2A1,2:0.76275563849;CDC5L:0.761468549243;HOX{A4,D4}:0.761123126791;POU3F1..4:0.730865184516;TFAP2{A,C}:0.718009085591;NKX2-1,4:0.711644874542;MTE{core}:0.668957199939;PRDM1:0.663623552174;SRF:0.656551698565;SOX17:0.650808761813;TFDP1:0.638537686362;EGR1..3:0.636026645379;SP1:0.633628979331;MAFB:0.613691909087;NR1H4:0.599160350328;MYFfamily:0.576835878306;HBP1_HMGB_SSRP1_UBTF:0.57037278124;HSF1,2:0.568269671177;NKX6-1,2:0.55361561279;ZFP161:0.535209815591;NANOG:0.53187786278;MED-1{core}:0.529033786605;EN1,2:0.527633077735;GATA4:0.524467482539;bHLH_family:0.523308023923;CRX:0.514392468148;AHR_ARNT_ARNT2:0.504281458656;GATA6:0.496912416919;NRF1:0.477245089299;PDX1:0.46738215538;ATF6:0.461289364874;NHLH1,2:0.445271507679;XCPE1{core}:0.443761351089;NFIX:0.44271052427;TAL1_TCF{3,4,12}:0.441997247957;ZNF143:0.434926534375;SPZ1:0.419569077871;GZF1:0.417252736066;NFY{A,B,C}:0.410041761617;SREBF1,2:0.403114895727;PRRX1,2:0.393261253131;STAT2,4,6:0.384228783104;TBX4,5:0.384154088629;EP300:0.379145765674;SOX2:0.378778899187;TFAP2B:0.368914154976;TGIF1:0.365293232315;ZNF148:0.360202592254;FOX{I1,J2}:0.336349417938;FOXO1,3,4:0.321743740415;PAX4:0.314783985963;GCM1,2:0.312067514104;POU1F1:0.31000308803;IRF7:0.309212771645;NFE2L2:0.274367060632;HNF1A:0.262539576477;EVI1:0.261023103452;E2F1..5:0.258056994077;ELK1,4_GABP{A,B1}:0.250840033697;LHX3,4:0.237207516586;SOX5:0.22407111954;RBPJ:0.212692377476;HAND1,2:0.189952343355;ALX4:0.161742376466;HES1:0.157425690424;TFCP2:0.146776682136;STAT5{A,B}:0.144450224048;CUX2:0.140408797447;PAX3,7:0.130462659171;KLF4:0.129530563036;HIF1A:0.121039686818;POU6F1:0.115950619287;PAX8:0.10822018374;BPTF:0.104455749762;MEF2{A,B,C,D}:0.0853635631284;BREu{core}:0.0841880574267;HMGA1,2:0.0826528756018;TP53:0.0721183873702;HLF:0.0641475266619;DBP:0.0548734800618;ELF1,2,4:0.0529118673632;FOX{D1,D2}:0.0499446042397;CEBPA,B_DDIT3:0.0298202231624;HNF4A_NR2F1,2:0.0265162709338;SOX{8,9,10}:0.0258737112635;T:0.0223844311908;FOS_FOS{B,L1}_JUN{B,D}:0.0173272889409;RXRA_VDR{dimer}:-0.00378220190019;REST:-0.00609371699498;IRF1,2:-0.00819559598109;MYB:-0.0356486917977;YY1:-0.0430713042764;ZIC1..3:-0.0596537154517;NFE2:-0.0607777647095;CDX1,2,4:-0.0688879168939;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0713296305917;BACH2:-0.0852777682772;VSX1,2:-0.106948168985;PAX6:-0.108116159161;RREB1:-0.125006311428;RFX1:-0.132921736033;FOXD3:-0.133523846933;TEF:-0.147767617487;ZBTB6:-0.148644256541;FOXN1:-0.150178170069;ETS1,2:-0.151086228485;PBX1:-0.154062077954;RORA:-0.1594787961;TBP:-0.163718758047;ONECUT1,2:-0.166703777094;UFEwm:-0.172160136489;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.172950412875;NANOG{mouse}:-0.180556556889;MTF1:-0.185329035231;NKX2-3_NKX2-5:-0.196415419908;FOSL2:-0.212703030672;PAX1,9:-0.2159185442;GLI1..3:-0.222124628973;JUN:-0.242320423716;ZNF423:-0.243865133832;NKX3-2:-0.264596287484;TOPORS:-0.268366790285;SPIB:-0.271209463071;ESRRA:-0.272902873484;ATF4:-0.282179284904;ALX1:-0.283753521535;FOXM1:-0.288822680704;NFE2L1:-0.301472638026;CREB1:-0.312560959974;TLX2:-0.353765226377;HMX1:-0.374372661016;RFX2..5_RFXANK_RFXAP:-0.385382559709;AIRE:-0.407838592945;RUNX1..3:-0.422342211078;SPI1:-0.433387086509;FOXP3:-0.441760343721;ZNF384:-0.454404786886;ATF5_CREB3:-0.478382359984;NFKB1_REL_RELA:-0.486433253378;ESR1:-0.511101350376;FOXQ1:-0.535940826133;PAX2:-0.538560904449;DMAP1_NCOR{1,2}_SMARC:-0.541936125834;FOXP1:-0.5586037383;NR6A1:-0.578078065055;POU5F1:-0.578473787304;FOX{F1,F2,J1}:-0.609727494022;HOXA9_MEIS1:-0.615284262406;NFIL3:-0.619930631844;NR5A1,2:-0.665518498654;ATF2:-0.674805640587;HOX{A6,A7,B6,B7}:-0.678698016734;ZBTB16:-0.704913889112;FOXL1:-0.707273470191;OCT4_SOX2{dimer}:-0.747370417693;PITX1..3:-0.755470446549;ARID5B:-0.813425603262;PPARG:-0.918429078577;POU2F1..3:-0.929670958211;LMO2:-0.95837355109;MYOD1:-1.10718369171;ZEB1:-1.1689926206;SNAI1..3:-1.17765023976;IKZF2:-1.63057594286
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11452-119A3;search_select_hide=table117:FF:11452-119A3
 }}

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FF:11452-119A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:01, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0