FF:11441-118I1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005997 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005997 | ||
|accession_numbers=CAGE;DRX008524;DRR009396;DRZ000821;DRZ002206;DRZ012171;DRZ013556 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037055;DRR041421;DRZ007063 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000189 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.52!332.12!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.15!156.80!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.89!76.22!IRF6;;chr14:90085820..90085840,-!p6@FOXN3!1.85!69.69!FOXN3;;chr11:34642612..34642646,+!p1@EHF!1.81!64.25!EHF;;chr1:6479968..6479986,-!p1@HES2!1.78!59.89!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.74!65.33!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.71!BNC1;;chr6:34524049..34524089,-!p2@SPDEF!1.70!49.00!SPDEF;;chr12:54785074..54785122,-!p2@ZNF385A!1.67!69.69!ZNF385A;;chr22:19748231..19748317,+!p1@TBX1!1.67!45.73!TBX1;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.73!SPDEF;;chr11:120107344..120107351,+!p1@POU2F3!1.65!52.27!POU2F3;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.00!ZNF385A;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.47!SOX7;;chr3:189507432..189507459,+!p1@TP63!1.62!40.29!TP63;;chr5:134369905..134369972,-!p1@PITX1!1.61!59.89!PITX1;;chr6:34524025..34524045,-!p3@SPDEF!1.55!34.85!SPDEF;;chr17:7492684..7492778,-!p2@SOX15!1.51!65.33!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.47!46.82!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.34!20.69!IRX2;;chr6:29648890..29648944,-!p1@ZFP57!1.29!18.51!ZFP57;;chr3:111314186..111314204,-!p1@ZBED2!1.27!17.42!ZBED2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!144.83!PPP1R13L;;chr2:122042770..122042785,-!p1@TFCP2L1!1.24!16.33!TFCP2L1;;chr14:38064429..38064486,-!p1@FOXA1!1.24!16.33!FOXA1;;chr2:46524897..46524911,+!p2@EPAS1!1.22!43.56!EPAS1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.21!182.94!ZC3H12A;;chr1:8934931..8934947,-!p4@ENO1!1.18!46.82!ENO1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.07!ZNF750;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.07!IRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.07!TFAP2A;;chr8:128748308..128748324,+!p2@MYC!1.13!339.74!MYC;;chr6:10415263..10415274,-!p8@TFAP2A!1.11!11.98!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.09!121.96!KLF5;;chr8:49833948..49833973,-!p2@SNAI2!1.09!72.96!SNAI2;;chr20:22565185..22565223,-!p3@FOXA2!1.08!10.89!FOXA2;;chr1:8938709..8938720,-!p3@ENO1!1.03!476.94!ENO1;;chr11:34645791..34645836,+!p3@EHF!1.03!9.80!EHF;;chr14:37131058..37131139,+!p1@PAX9!1.03!9.80!PAX9;;chr17:41623692..41623715,-!p1@ETV4!1.02!41.38!ETV4;;chr5:72744594..72744609,-!p1@FOXD1!0.99!41.38!FOXD1;;chr15:83953373..83953386,-!p2@BNC1!0.99!8.71!BNC1;;chr17:45928443..45928473,-!p2@SP6!0.99!8.71!SP6;;chr17:8027418..8027432,-!p1@HES7!0.99!8.71!HES7;;chr1:209979449..209979460,-!p3@IRF6!0.99!8.71!IRF6;;chr11:129245526..129245553,+!p1@BARX2!0.99!8.71!BARX2;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.87!ARNTL2;;chr14:21566731..21566836,-!p1@ZNF219!0.96!90.38!ZNF219;;chr20:50721803..50721857,-!p2@ZFP64!0.96!13.07!ZFP64;;chr2:239756671..239756732,+!p1@TWIST2!0.95!26.13!TWIST2;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.07!FOXQ1;;chr19:42636586..42636607,-!p1@POU2F2!0.94!21.78!POU2F2;;chr5:134369848..134369853,-!p6@PITX1!0.94!7.62!PITX1;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.62!NFE2L1;;chr1:149858461..149858479,+!p1@BOLA1!0.92!2966.19!BOLA1;;chr12:66218598..66218645,+!p2@HMGA2!0.92!34.85!HMGA2;;chr2:46524878..46524891,+!p3@EPAS1!0.92!13.07!EPAS1;;chr11:65686802..65686818,+!p6@DRAP1!0.89!11.98!DRAP1;;chr11:34642656..34642667,+!p2@EHF!0.88!6.53!EHF;;chr15:101069113..101069169,-!p1@CERS3!0.88!6.53!CERS3;;chr16:67881647..67881663,-!p3@CENPT!0.88!6.53!CENPT;;chr18:3447536..3447542,+!p23@TGIF1!0.88!6.53!TGIF1;;chr5:134369879..134369898,-!p2@PITX1!0.88!6.53!PITX1;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.53!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.53!GRHL2;;chr20:22564895..22564910,-!p1@FOXA2!0.88!6.53!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.53!FOXA2;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.53!KDM5D;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.49!ZNF296;;chr2:70142232..70142251,+!p1@MXD1!0.86!37.02!MXD1;;chr8:128747661..128747703,+!p6@MYC!0.86!8.71!MYC;;chr8:128747757..128747800,+!p7@MYC!0.86!8.71!MYC;;chr12:66218836..66218888,+!p1@HMGA2!0.85!59.89!HMGA2;;chr12:48298765..48298783,-!p2@VDR!0.85!13.07!VDR;;chrX:48900782..48900793,-!p3@TFE3!0.85!11.98!TFE3;;chr17:41623667..41623682,-!p8@ETV4!0.85!6.53!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.62!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!430.12!TAX1BP3;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.78!ZBTB7B;;chr1:935398..935465,-!p2@HES4!0.81!11.98!HES4;;chr1:37947257..37947292,+!p4@ZC3H12A!0.81!5.44!ZC3H12A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.44!OVOL2;;chr17:7492504..7492520,-!p3@SOX15!0.81!5.44!SOX15;;chr6:10413188..10413249,-!p7@TFAP2A!0.81!5.44!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.81!5.44!TFAP2A;;chr6:10420285..10420304,-!p18@TFAP2A!0.81!5.44!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.44!ZNF165;;chr8:128747729..128747748,+!p14@MYC!0.81!5.44!MYC;;chr12:66218469..66218477,+!p16@HMGA2!0.81!5.44!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!0.81!5.44!OTX1;;chr12:66218255..66218304,+!p3@HMGA2!0.80!15.24!HMGA2;;chr11:65667846..65667868,-!p1@FOSL1!0.78!145.91!FOSL1;;chr18:3448455..3448480,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| 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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000307;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223,CL:0000377 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Tracheal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12051.11441-118I1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11441-118I1 | |id=FF:11441-118I1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000189 | ||
|is_obsolete= | |||
|library_id=CNhs12051 | |||
|library_id_phase_based=2:CNhs12051 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11441 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.CGATGT.11441 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11441 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.CGATGT.11441 | |||
|name=Tracheal Epithelial Cells, donor3 | |name=Tracheal Epithelial Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12051,LSID838,release011,COMPLETED | |profile_hcage=CNhs12051,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA504-R10a | |rna_catalog_number=CA504-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118I1 | |rna_tube_id=118I1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.CGATGT | |||
|sample_age=60 | |sample_age=60 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.17154396723151e-204!GO:0005737;cytoplasm;3.57736711394749e-199!GO:0043226;organelle;1.48903034451891e-153!GO:0043229;intracellular organelle;3.09321638619107e-153!GO:0043231;intracellular membrane-bound organelle;2.90723039309612e-143!GO:0043227;membrane-bound organelle;5.09108261567364e-143!GO:0044444;cytoplasmic part;3.98344828284571e-136!GO:0044422;organelle part;9.44111871959386e-134!GO:0044446;intracellular organelle part;1.90918787272567e-132!GO:0032991;macromolecular complex;5.26058492632297e-86!GO:0030529;ribonucleoprotein complex;3.53616306711633e-76!GO:0044237;cellular metabolic process;1.59620245978939e-74!GO:0005739;mitochondrion;1.77043435095083e-73!GO:0044238;primary metabolic process;4.95101107073569e-73!GO:0005515;protein binding;2.23083161497945e-72!GO:0043233;organelle lumen;2.77566213860789e-62!GO:0031974;membrane-enclosed lumen;2.77566213860789e-62!GO:0043170;macromolecule metabolic process;3.29197040914397e-61!GO:0003723;RNA binding;2.14168907128801e-56!GO:0009058;biosynthetic process;2.56105974297457e-55!GO:0044428;nuclear part;3.90799813961747e-54!GO:0019538;protein metabolic process;1.76623551619959e-53!GO:0031090;organelle membrane;1.81434066873207e-53!GO:0006412;translation;2.17317302887436e-53!GO:0005840;ribosome;4.47255055640018e-53!GO:0044249;cellular biosynthetic process;1.25116885384459e-50!GO:0044429;mitochondrial part;6.73429247174147e-49!GO:0003735;structural constituent of ribosome;9.37281240524952e-48!GO:0044260;cellular macromolecule metabolic process;4.06981929155802e-47!GO:0044267;cellular protein metabolic process;4.26597647824435e-47!GO:0009059;macromolecule biosynthetic process;1.43149069090738e-45!GO:0043234;protein complex;4.33783696680981e-44!GO:0033279;ribosomal subunit;2.30569577132566e-42!GO:0005829;cytosol;3.59325852399273e-41!GO:0031967;organelle envelope;6.00294839701661e-41!GO:0031975;envelope;1.38183616984002e-40!GO:0005634;nucleus;3.28301253057255e-40!GO:0006396;RNA processing;6.4459057154365e-39!GO:0016043;cellular component organization and biogenesis;9.58598552480331e-39!GO:0015031;protein transport;1.05266405763879e-38!GO:0033036;macromolecule localization;1.94637549754549e-37!GO:0045184;establishment of protein localization;8.33124709498867e-36!GO:0008104;protein localization;1.77446760706057e-35!GO:0043228;non-membrane-bound organelle;4.91431573319448e-35!GO:0043232;intracellular non-membrane-bound organelle;4.91431573319448e-35!GO:0031981;nuclear lumen;3.37980067680749e-34!GO:0065003;macromolecular complex assembly;2.33752052999672e-32!GO:0005740;mitochondrial envelope;5.96143974728595e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.29427480588959e-31!GO:0046907;intracellular transport;1.97296530312216e-30!GO:0031966;mitochondrial membrane;5.01317978037684e-30!GO:0019866;organelle inner membrane;3.42762655894476e-28!GO:0022607;cellular component assembly;1.03719222556103e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.63792474269181e-27!GO:0006886;intracellular protein transport;1.94124776645508e-27!GO:0043283;biopolymer metabolic process;3.2330492106744e-27!GO:0006996;organelle organization and biogenesis;6.5737919081559e-27!GO:0016071;mRNA metabolic process;8.10398108589613e-27!GO:0005743;mitochondrial inner membrane;1.26839097979038e-26!GO:0044445;cytosolic part;4.04888886640348e-25!GO:0008380;RNA splicing;6.54775179040039e-24!GO:0006397;mRNA processing;1.13566646723277e-22!GO:0015935;small ribosomal subunit;4.63672606558574e-22!GO:0010467;gene expression;5.78584836405817e-22!GO:0031980;mitochondrial lumen;1.97519896118439e-21!GO:0005759;mitochondrial matrix;1.97519896118439e-21!GO:0015934;large ribosomal subunit;2.35092278320962e-21!GO:0006119;oxidative phosphorylation;3.55039905296065e-21!GO:0012505;endomembrane system;5.67464954630874e-21!GO:0005783;endoplasmic reticulum;6.67174321348693e-20!GO:0051649;establishment of cellular localization;1.15999565480582e-19!GO:0006259;DNA metabolic process;1.5326609482612e-19!GO:0044455;mitochondrial membrane part;1.70464432948347e-19!GO:0051641;cellular localization;1.70464432948347e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.42325150882948e-19!GO:0051186;cofactor metabolic process;4.21146351847338e-19!GO:0016874;ligase activity;6.40148378284882e-19!GO:0005730;nucleolus;3.76170669621579e-18!GO:0005654;nucleoplasm;4.26863885915837e-18!GO:0005681;spliceosome;4.50574768379371e-18!GO:0000166;nucleotide binding;6.41364523936812e-18!GO:0016462;pyrophosphatase activity;1.95884906991244e-17!GO:0006457;protein folding;2.28605586703757e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.51446990329709e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.10359047990151e-17!GO:0044432;endoplasmic reticulum part;4.69352342445114e-17!GO:0048770;pigment granule;6.94046068235872e-17!GO:0042470;melanosome;6.94046068235872e-17!GO:0007049;cell cycle;7.86364552843614e-17!GO:0017111;nucleoside-triphosphatase activity;9.73304872250186e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.19231113117242e-16!GO:0044265;cellular macromolecule catabolic process;1.49404681164208e-16!GO:0009057;macromolecule catabolic process;4.23650451309325e-16!GO:0044248;cellular catabolic process;5.57586380102309e-16!GO:0006512;ubiquitin cycle;7.86181987918685e-16!GO:0005746;mitochondrial respiratory chain;8.01231297537068e-16!GO:0006605;protein targeting;9.71258269536943e-16!GO:0043285;biopolymer catabolic process;1.27357281334368e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.96173446116513e-15!GO:0006732;coenzyme metabolic process;2.93995931060297e-15!GO:0044451;nucleoplasm part;5.4897612523346e-15!GO:0022618;protein-RNA complex assembly;7.29262903627775e-15!GO:0043412;biopolymer modification;7.34443184500155e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.56008691993334e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.31102623824005e-14!GO:0012501;programmed cell death;2.47132030817008e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.99552260001157e-14!GO:0003954;NADH dehydrogenase activity;3.99552260001157e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.99552260001157e-14!GO:0005794;Golgi apparatus;4.2794188582365e-14!GO:0005761;mitochondrial ribosome;4.84552385427639e-14!GO:0000313;organellar ribosome;4.84552385427639e-14!GO:0006915;apoptosis;5.39462348104476e-14!GO:0008134;transcription factor binding;5.96143777529583e-14!GO:0009055;electron carrier activity;8.61447533063591e-14!GO:0006464;protein modification process;1.34517244726074e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.01271777306896e-13!GO:0019941;modification-dependent protein catabolic process;2.25881039446502e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.25881039446502e-13!GO:0017076;purine nucleotide binding;2.50769567952711e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.53930409376889e-13!GO:0044257;cellular protein catabolic process;3.57773023340322e-13!GO:0005789;endoplasmic reticulum membrane;4.18509412358368e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.19915906447007e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.90810057534192e-13!GO:0042254;ribosome biogenesis and assembly;5.07883135610552e-13!GO:0032553;ribonucleotide binding;5.27235541249351e-13!GO:0032555;purine ribonucleotide binding;5.27235541249351e-13!GO:0022402;cell cycle process;9.47698613018082e-13!GO:0030163;protein catabolic process;9.49484187764637e-13!GO:0008219;cell death;1.02906662279185e-12!GO:0016265;death;1.02906662279185e-12!GO:0051082;unfolded protein binding;1.20532622367942e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.0964558555943e-12!GO:0042773;ATP synthesis coupled electron transport;3.0964558555943e-12!GO:0006399;tRNA metabolic process;3.2624605744975e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.882126860007e-12!GO:0045271;respiratory chain complex I;3.882126860007e-12!GO:0005747;mitochondrial respiratory chain complex I;3.882126860007e-12!GO:0043067;regulation of programmed cell death;4.3411971559959e-12!GO:0042981;regulation of apoptosis;6.30362641176197e-12!GO:0008135;translation factor activity, nucleic acid binding;1.30967791900193e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.36489736966988e-11!GO:0000278;mitotic cell cycle;2.41589894325213e-11!GO:0048193;Golgi vesicle transport;2.76077005626955e-11!GO:0051188;cofactor biosynthetic process;2.76077005626955e-11!GO:0016192;vesicle-mediated transport;3.00334182490137e-11!GO:0030554;adenyl nucleotide binding;3.93735709293029e-11!GO:0005524;ATP binding;3.96917601992214e-11!GO:0032559;adenyl ribonucleotide binding;6.2168458803369e-11!GO:0009056;catabolic process;6.96804226794409e-11!GO:0043687;post-translational protein modification;8.80348748166822e-11!GO:0006461;protein complex assembly;8.90410155494579e-11!GO:0009259;ribonucleotide metabolic process;1.02021797098373e-10!GO:0006163;purine nucleotide metabolic process;1.66606156998295e-10!GO:0006913;nucleocytoplasmic transport;1.96834764617487e-10!GO:0016491;oxidoreductase activity;2.00224676096489e-10!GO:0009150;purine ribonucleotide metabolic process;3.03900820954501e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.51519611297486e-10!GO:0000375;RNA splicing, via transesterification reactions;3.51519611297486e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.51519611297486e-10!GO:0051169;nuclear transport;3.805159058609e-10!GO:0005635;nuclear envelope;6.81056991518371e-10!GO:0000074;regulation of progression through cell cycle;1.07176467096509e-09!GO:0051726;regulation of cell cycle;1.20960482261557e-09!GO:0006974;response to DNA damage stimulus;1.47729523849585e-09!GO:0006164;purine nucleotide biosynthetic process;1.50913529860179e-09!GO:0009141;nucleoside triphosphate metabolic process;1.87058581359943e-09!GO:0006413;translational initiation;2.30283004527562e-09!GO:0009260;ribonucleotide biosynthetic process;2.40113020830482e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.43772706414829e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.67263161039582e-09!GO:0006446;regulation of translational initiation;2.7190340769551e-09!GO:0008565;protein transporter activity;4.18881629120612e-09!GO:0042623;ATPase activity, coupled;4.62495860841062e-09!GO:0031965;nuclear membrane;4.90224810010197e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.28978139074238e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.53879840718115e-09!GO:0003743;translation initiation factor activity;5.56800385324371e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.03114472561092e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.21460828071927e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.21460828071927e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.21460828071927e-09!GO:0005793;ER-Golgi intermediate compartment;6.23413961826111e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.35151314878753e-09!GO:0009108;coenzyme biosynthetic process;6.50962362280353e-09!GO:0006364;rRNA processing;6.99529775802869e-09!GO:0017038;protein import;7.35384519206885e-09!GO:0007005;mitochondrion organization and biogenesis;8.13708413841812e-09!GO:0016072;rRNA metabolic process;9.36760033714831e-09!GO:0044453;nuclear membrane part;9.41370520789566e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.68828172467157e-09!GO:0003712;transcription cofactor activity;1.01639734850588e-08!GO:0016887;ATPase activity;1.07570969279784e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.1435858063241e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.1435858063241e-08!GO:0008639;small protein conjugating enzyme activity;1.46706580256194e-08!GO:0048523;negative regulation of cellular process;1.49097315191438e-08!GO:0006334;nucleosome assembly;1.50385753376509e-08!GO:0043038;amino acid activation;1.52751304801784e-08!GO:0006418;tRNA aminoacylation for protein translation;1.52751304801784e-08!GO:0043039;tRNA aminoacylation;1.52751304801784e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.73134040845109e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73134040845109e-08!GO:0065004;protein-DNA complex assembly;1.83090551337031e-08!GO:0006323;DNA packaging;2.37570223442547e-08!GO:0043069;negative regulation of programmed cell death;2.66819532462147e-08!GO:0004842;ubiquitin-protein ligase activity;2.96780583794637e-08!GO:0015986;ATP synthesis coupled proton transport;3.07313890382658e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.07313890382658e-08!GO:0016740;transferase activity;3.09276107485419e-08!GO:0051276;chromosome organization and biogenesis;3.1609035437656e-08!GO:0016787;hydrolase activity;3.58704791507028e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.96209518876362e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.96209518876362e-08!GO:0009719;response to endogenous stimulus;4.93427252108821e-08!GO:0009117;nucleotide metabolic process;5.08319539675819e-08!GO:0048475;coated membrane;6.92992941331074e-08!GO:0030117;membrane coat;6.92992941331074e-08!GO:0005768;endosome;7.3056640832106e-08!GO:0043066;negative regulation of apoptosis;7.42272949514542e-08!GO:0019787;small conjugating protein ligase activity;8.06352779615294e-08!GO:0030120;vesicle coat;8.34746456391779e-08!GO:0030662;coated vesicle membrane;8.34746456391779e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.24765588290547e-08!GO:0046034;ATP metabolic process;9.70058285951291e-08!GO:0031497;chromatin assembly;9.87655186303633e-08!GO:0051246;regulation of protein metabolic process;1.09306817690062e-07!GO:0016604;nuclear body;1.24606852542373e-07!GO:0022403;cell cycle phase;1.26354228105014e-07!GO:0000785;chromatin;1.559045881698e-07!GO:0006333;chromatin assembly or disassembly;1.64462362182873e-07!GO:0006916;anti-apoptosis;1.79202726204323e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.85052747688236e-07!GO:0016881;acid-amino acid ligase activity;2.28834311545345e-07!GO:0006091;generation of precursor metabolites and energy;2.30743619572278e-07!GO:0006752;group transfer coenzyme metabolic process;2.32131492749558e-07!GO:0009060;aerobic respiration;2.71649525598125e-07!GO:0048519;negative regulation of biological process;2.74159935590964e-07!GO:0006754;ATP biosynthetic process;2.89516779195101e-07!GO:0006753;nucleoside phosphate metabolic process;2.89516779195101e-07!GO:0005694;chromosome;3.01836546815321e-07!GO:0006366;transcription from RNA polymerase II promoter;3.22250584715372e-07!GO:0000087;M phase of mitotic cell cycle;3.32460640630883e-07!GO:0019829;cation-transporting ATPase activity;3.75843145692581e-07!GO:0044427;chromosomal part;3.97446600379507e-07!GO:0003676;nucleic acid binding;3.98363437962698e-07!GO:0007067;mitosis;3.98363437962698e-07!GO:0006281;DNA repair;4.43676518418156e-07!GO:0005643;nuclear pore;4.59915146128765e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.51641122004287e-07!GO:0065002;intracellular protein transport across a membrane;5.5765901423691e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.48297627681294e-07!GO:0006260;DNA replication;7.72107304538351e-07!GO:0045259;proton-transporting ATP synthase complex;1.29766215093961e-06!GO:0045333;cellular respiration;1.54727205127194e-06!GO:0044431;Golgi apparatus part;1.67523725203064e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.90190121251332e-06!GO:0000786;nucleosome;2.19508913154539e-06!GO:0004386;helicase activity;2.55554353384066e-06!GO:0048522;positive regulation of cellular process;2.71374805228503e-06!GO:0016779;nucleotidyltransferase activity;2.82246758900961e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.91618759853414e-06!GO:0003924;GTPase activity;3.01665290403575e-06!GO:0005773;vacuole;3.32789228550136e-06!GO:0008026;ATP-dependent helicase activity;3.39538492152059e-06!GO:0043623;cellular protein complex assembly;3.98307448976239e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.34215890963878e-06!GO:0046930;pore complex;4.38189172757476e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.71812718405056e-06!GO:0065009;regulation of a molecular function;6.34645122496426e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.48772698293275e-06!GO:0016070;RNA metabolic process;9.28628684497992e-06!GO:0051170;nuclear import;1.01423601921612e-05!GO:0051187;cofactor catabolic process;1.18984764956601e-05!GO:0042802;identical protein binding;1.20087845044545e-05!GO:0045454;cell redox homeostasis;1.20361364885945e-05!GO:0006099;tricarboxylic acid cycle;1.3102212947145e-05!GO:0046356;acetyl-CoA catabolic process;1.3102212947145e-05!GO:0006606;protein import into nucleus;1.39530653032001e-05!GO:0016567;protein ubiquitination;1.41810738487588e-05!GO:0005762;mitochondrial large ribosomal subunit;1.48226332262865e-05!GO:0000315;organellar large ribosomal subunit;1.48226332262865e-05!GO:0016607;nuclear speck;1.53541757777355e-05!GO:0009109;coenzyme catabolic process;1.9119709659508e-05!GO:0000323;lytic vacuole;2.26528216957986e-05!GO:0005764;lysosome;2.26528216957986e-05!GO:0006084;acetyl-CoA metabolic process;2.44868636098118e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.50172520249984e-05!GO:0006793;phosphorus metabolic process;2.50172520249984e-05!GO:0006796;phosphate metabolic process;2.50172520249984e-05!GO:0005770;late endosome;2.54931225483916e-05!GO:0004298;threonine endopeptidase activity;2.61333090949018e-05!GO:0005788;endoplasmic reticulum lumen;2.72572202587031e-05!GO:0000279;M phase;2.77235285360162e-05!GO:0016853;isomerase activity;2.80624700729621e-05!GO:0032446;protein modification by small protein conjugation;2.8924661796153e-05!GO:0051301;cell division;2.92647065329476e-05!GO:0003697;single-stranded DNA binding;3.14447339712028e-05!GO:0031988;membrane-bound vesicle;3.45618475422407e-05!GO:0019843;rRNA binding;4.19596299895548e-05!GO:0000139;Golgi membrane;4.28662505884499e-05!GO:0008654;phospholipid biosynthetic process;4.29595103946272e-05!GO:0000245;spliceosome assembly;5.27980886556812e-05!GO:0051329;interphase of mitotic cell cycle;5.68513899621879e-05!GO:0003714;transcription corepressor activity;5.94691686755091e-05!GO:0044440;endosomal part;6.3041795666155e-05!GO:0010008;endosome membrane;6.3041795666155e-05!GO:0006082;organic acid metabolic process;6.41796603908629e-05!GO:0009967;positive regulation of signal transduction;6.97863249962981e-05!GO:0008033;tRNA processing;7.37845236197641e-05!GO:0005798;Golgi-associated vesicle;8.12914185340844e-05!GO:0019752;carboxylic acid metabolic process;8.23968135681824e-05!GO:0031968;organelle outer membrane;8.30178257468967e-05!GO:0006979;response to oxidative stress;8.56124231584868e-05!GO:0019867;outer membrane;8.5958268798843e-05!GO:0051427;hormone receptor binding;8.63163033710796e-05!GO:0048518;positive regulation of biological process;9.0911415047114e-05!GO:0031252;leading edge;9.45233744919668e-05!GO:0007243;protein kinase cascade;9.69923393380514e-05!GO:0006403;RNA localization;0.000104407982983624!GO:0050657;nucleic acid transport;0.000108897891789982!GO:0051236;establishment of RNA localization;0.000108897891789982!GO:0050658;RNA transport;0.000108897891789982!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000114939567600356!GO:0045786;negative regulation of progression through cell cycle;0.000124167722877206!GO:0043065;positive regulation of apoptosis;0.000128066735323688!GO:0008610;lipid biosynthetic process;0.00013225109452121!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000133393674650912!GO:0005525;GTP binding;0.000134568387205802!GO:0051325;interphase;0.000135120006981604!GO:0043068;positive regulation of programmed cell death;0.000139914852749515!GO:0000314;organellar small ribosomal subunit;0.000141102468824507!GO:0005763;mitochondrial small ribosomal subunit;0.000141102468824507!GO:0003899;DNA-directed RNA polymerase activity;0.000142153691154083!GO:0005905;coated pit;0.000145462419660557!GO:0009165;nucleotide biosynthetic process;0.000152182478031199!GO:0005741;mitochondrial outer membrane;0.000173169039748017!GO:0035257;nuclear hormone receptor binding;0.000174456111261645!GO:0005667;transcription factor complex;0.000174468205438652!GO:0016310;phosphorylation;0.000174491702414481!GO:0019899;enzyme binding;0.000180723736836302!GO:0048037;cofactor binding;0.000184674529492002!GO:0030118;clathrin coat;0.000188677302595144!GO:0043566;structure-specific DNA binding;0.00018928771376295!GO:0016564;transcription repressor activity;0.000198157096477128!GO:0030132;clathrin coat of coated pit;0.000211379943949024!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000228032894518899!GO:0006626;protein targeting to mitochondrion;0.000237641592834553!GO:0008632;apoptotic program;0.000249841725477727!GO:0033116;ER-Golgi intermediate compartment membrane;0.000280001190807696!GO:0007006;mitochondrial membrane organization and biogenesis;0.000289919147756996!GO:0016044;membrane organization and biogenesis;0.000292677237645455!GO:0031324;negative regulation of cellular metabolic process;0.00033248143082075!GO:0006613;cotranslational protein targeting to membrane;0.000338322099127433!GO:0030867;rough endoplasmic reticulum membrane;0.000340205533373118!GO:0044262;cellular carbohydrate metabolic process;0.000371577137099893!GO:0015980;energy derivation by oxidation of organic compounds;0.0003835320313118!GO:0015630;microtubule cytoskeleton;0.0003835320313118!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000405399311060407!GO:0006839;mitochondrial transport;0.000426033553532976!GO:0048471;perinuclear region of cytoplasm;0.000446298431546941!GO:0005048;signal sequence binding;0.000458079435107777!GO:0005769;early endosome;0.000464793452257218!GO:0016126;sterol biosynthetic process;0.000465754183936792!GO:0050790;regulation of catalytic activity;0.000469013650423023!GO:0031982;vesicle;0.000479729947536805!GO:0043681;protein import into mitochondrion;0.000482895512025085!GO:0016568;chromatin modification;0.000492421549181459!GO:0031410;cytoplasmic vesicle;0.00050401622996645!GO:0051168;nuclear export;0.000517673505066603!GO:0050662;coenzyme binding;0.000546485095439871!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000581681134868429!GO:0015399;primary active transmembrane transporter activity;0.000581681134868429!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000605111899455165!GO:0006520;amino acid metabolic process;0.000608255781370559!GO:0003713;transcription coactivator activity;0.000648334015697232!GO:0003724;RNA helicase activity;0.000661297457933959!GO:0046474;glycerophospholipid biosynthetic process;0.000684120353268099!GO:0006118;electron transport;0.000696066639127498!GO:0006917;induction of apoptosis;0.000784797612787617!GO:0030176;integral to endoplasmic reticulum membrane;0.000788178360818678!GO:0030119;AP-type membrane coat adaptor complex;0.000850646130203022!GO:0043021;ribonucleoprotein binding;0.000864661477902245!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000945847692188954!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00100476925016224!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100671790587465!GO:0046483;heterocycle metabolic process;0.00103369631265118!GO:0012502;induction of programmed cell death;0.00109335210669798!GO:0030131;clathrin adaptor complex;0.00110837252032885!GO:0006414;translational elongation;0.00115799377752687!GO:0051028;mRNA transport;0.00117912123243392!GO:0048468;cell development;0.0011883521649143!GO:0000151;ubiquitin ligase complex;0.00123130998797202!GO:0051920;peroxiredoxin activity;0.0012727510759705!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00128093273150132!GO:0032561;guanyl ribonucleotide binding;0.00140137758360084!GO:0019001;guanyl nucleotide binding;0.00140137758360084!GO:0015992;proton transport;0.00142946462953065!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00144718671782596!GO:0008250;oligosaccharyl transferase complex;0.00154913321434286!GO:0005819;spindle;0.00155122868580057!GO:0051789;response to protein stimulus;0.00155122868580057!GO:0006986;response to unfolded protein;0.00155122868580057!GO:0009892;negative regulation of metabolic process;0.00158483001842877!GO:0030036;actin cytoskeleton organization and biogenesis;0.00158869137376005!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00162572932797565!GO:0004576;oligosaccharyl transferase activity;0.00176982801398567!GO:0008652;amino acid biosynthetic process;0.00178762356147361!GO:0007264;small GTPase mediated signal transduction;0.00189861492451866!GO:0005885;Arp2/3 protein complex;0.00209653252876026!GO:0016859;cis-trans isomerase activity;0.00209653252876026!GO:0006612;protein targeting to membrane;0.00213113491163942!GO:0005791;rough endoplasmic reticulum;0.00214179657865068!GO:0046489;phosphoinositide biosynthetic process;0.00218487475433429!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00220395611038492!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00220395611038492!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00222894706415655!GO:0030880;RNA polymerase complex;0.0022663288875745!GO:0003684;damaged DNA binding;0.00229371838058812!GO:0030125;clathrin vesicle coat;0.00230041655818682!GO:0030665;clathrin coated vesicle membrane;0.00230041655818682!GO:0030658;transport vesicle membrane;0.00236514116255155!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00236608692856531!GO:0005774;vacuolar membrane;0.00262004583231131!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0026612764848963!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0026612764848963!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0026612764848963!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00270555427341006!GO:0005813;centrosome;0.00275724373260622!GO:0008092;cytoskeletal protein binding;0.00279694512305859!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00279694512305859!GO:0008637;apoptotic mitochondrial changes;0.00280852727853061!GO:0016563;transcription activator activity;0.00288004199818391!GO:0006066;alcohol metabolic process;0.00291722210048915!GO:0051540;metal cluster binding;0.00294459628226001!GO:0051536;iron-sulfur cluster binding;0.00294459628226001!GO:0006401;RNA catabolic process;0.0030343984546593!GO:0030663;COPI coated vesicle membrane;0.00314762643550182!GO:0030126;COPI vesicle coat;0.00314762643550182!GO:0044452;nucleolar part;0.00316606363568584!GO:0006818;hydrogen transport;0.00326718827443709!GO:0000049;tRNA binding;0.00329151962122412!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00335242761962757!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00336289322483981!GO:0006950;response to stress;0.00340592352661595!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00341687423808849!GO:0051338;regulation of transferase activity;0.00359292855078489!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00375845510041562!GO:0043488;regulation of mRNA stability;0.00375845510041562!GO:0043487;regulation of RNA stability;0.00375845510041562!GO:0050794;regulation of cellular process;0.00387594064712238!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00401313881195867!GO:0006695;cholesterol biosynthetic process;0.00411077082621657!GO:0043492;ATPase activity, coupled to movement of substances;0.00418405285307073!GO:0008186;RNA-dependent ATPase activity;0.00425475996599401!GO:0006402;mRNA catabolic process;0.00428949316064056!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00433821925328536!GO:0051101;regulation of DNA binding;0.00435150414412328!GO:0051252;regulation of RNA metabolic process;0.00472064377410841!GO:0016125;sterol metabolic process;0.00472080879674355!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00480063438167497!GO:0000428;DNA-directed RNA polymerase complex;0.00480063438167497!GO:0030137;COPI-coated vesicle;0.00480063438167497!GO:0046467;membrane lipid biosynthetic process;0.00480063438167497!GO:0006595;polyamine metabolic process;0.00480427636926982!GO:0006778;porphyrin metabolic process;0.00501320882119783!GO:0033013;tetrapyrrole metabolic process;0.00501320882119783!GO:0006417;regulation of translation;0.00502496161792923!GO:0004518;nuclease activity;0.00506887738114518!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00513225819072107!GO:0005684;U2-dependent spliceosome;0.00513225819072107!GO:0018196;peptidyl-asparagine modification;0.00513225819072107!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00513225819072107!GO:0017166;vinculin binding;0.00532099012719789!GO:0051098;regulation of binding;0.00561792369048248!GO:0008243;plasminogen activator activity;0.00574065690893851!GO:0044437;vacuolar part;0.00584943567442723!GO:0030660;Golgi-associated vesicle membrane;0.00597099953820698!GO:0005815;microtubule organizing center;0.00606936610373546!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00620900351645!GO:0031902;late endosome membrane;0.0065347176921057!GO:0007088;regulation of mitosis;0.00656419450836538!GO:0001726;ruffle;0.00656614026372132!GO:0016481;negative regulation of transcription;0.00670266096943235!GO:0043284;biopolymer biosynthetic process;0.00670857891861846!GO:0006891;intra-Golgi vesicle-mediated transport;0.00679291189377128!GO:0043549;regulation of kinase activity;0.0069108528697258!GO:0019318;hexose metabolic process;0.00703689786160182!GO:0006261;DNA-dependent DNA replication;0.00709285102238387!GO:0030659;cytoplasmic vesicle membrane;0.00712927240698757!GO:0005996;monosaccharide metabolic process;0.00725208102964502!GO:0031072;heat shock protein binding;0.00732415907863507!GO:0030029;actin filament-based process;0.00740952851564908!GO:0005149;interleukin-1 receptor binding;0.00747958353682592!GO:0001836;release of cytochrome c from mitochondria;0.00760979485997505!GO:0008139;nuclear localization sequence binding;0.00772859688450718!GO:0048487;beta-tubulin binding;0.00778076475730894!GO:0006007;glucose catabolic process;0.00782841826928046!GO:0015631;tubulin binding;0.00786069755745187!GO:0030031;cell projection biogenesis;0.00822088055010518!GO:0004004;ATP-dependent RNA helicase activity;0.00835361019729364!GO:0006383;transcription from RNA polymerase III promoter;0.00841122069154158!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00854510331999959!GO:0003729;mRNA binding;0.0085979895032138!GO:0030145;manganese ion binding;0.00869165299073034!GO:0005765;lysosomal membrane;0.0087662041542986!GO:0006611;protein export from nucleus;0.00894984428312526!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00894984428312526!GO:0006779;porphyrin biosynthetic process;0.0090498356332774!GO:0033014;tetrapyrrole biosynthetic process;0.0090498356332774!GO:0016197;endosome transport;0.00915287352940235!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00931156653054424!GO:0008283;cell proliferation;0.00943944619712876!GO:0030133;transport vesicle;0.00947603043018476!GO:0006807;nitrogen compound metabolic process;0.00972983114911015!GO:0035258;steroid hormone receptor binding;0.0101517290293525!GO:0008629;induction of apoptosis by intracellular signals;0.0102071248814386!GO:0006650;glycerophospholipid metabolic process;0.0107466303399029!GO:0009889;regulation of biosynthetic process;0.011330051524552!GO:0051539;4 iron, 4 sulfur cluster binding;0.0114391966692035!GO:0016272;prefoldin complex;0.0115926118326053!GO:0007010;cytoskeleton organization and biogenesis;0.0116547559109394!GO:0006506;GPI anchor biosynthetic process;0.0117720393985205!GO:0003711;transcription elongation regulator activity;0.0119072025256117!GO:0044255;cellular lipid metabolic process;0.011923930321455!GO:0006730;one-carbon compound metabolic process;0.0119385878213341!GO:0045941;positive regulation of transcription;0.011944005688709!GO:0006740;NADPH regeneration;0.0120256244137447!GO:0006098;pentose-phosphate shunt;0.0120256244137447!GO:0030503;regulation of cell redox homeostasis;0.0120951538704318!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0122598253700576!GO:0006519;amino acid and derivative metabolic process;0.0123101438911587!GO:0006733;oxidoreduction coenzyme metabolic process;0.012536584649998!GO:0006497;protein amino acid lipidation;0.0126817513455429!GO:0006749;glutathione metabolic process;0.0128160860127724!GO:0000059;protein import into nucleus, docking;0.012831169035847!GO:0051287;NAD binding;0.0129977036630212!GO:0046822;regulation of nucleocytoplasmic transport;0.0132031364309534!GO:0042168;heme metabolic process;0.0133744768095145!GO:0048144;fibroblast proliferation;0.0136487193740518!GO:0048145;regulation of fibroblast proliferation;0.0136487193740518!GO:0006284;base-excision repair;0.0136593198964655!GO:0045859;regulation of protein kinase activity;0.0141002029515615!GO:0006509;membrane protein ectodomain proteolysis;0.014325476164512!GO:0033619;membrane protein proteolysis;0.014325476164512!GO:0044433;cytoplasmic vesicle part;0.0144079260987115!GO:0000096;sulfur amino acid metabolic process;0.0144532187125254!GO:0031272;regulation of pseudopodium formation;0.0144532187125254!GO:0031269;pseudopodium formation;0.0144532187125254!GO:0031344;regulation of cell projection organization and biogenesis;0.0144532187125254!GO:0031268;pseudopodium organization and biogenesis;0.0144532187125254!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0144532187125254!GO:0031274;positive regulation of pseudopodium formation;0.0144532187125254!GO:0022890;inorganic cation transmembrane transporter activity;0.0144994840432296!GO:0006289;nucleotide-excision repair;0.0145307472440874!GO:0000082;G1/S transition of mitotic cell cycle;0.01467055067789!GO:0046870;cadmium ion binding;0.0146783457959692!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0149601489332022!GO:0030027;lamellipodium;0.0152387746828193!GO:0042158;lipoprotein biosynthetic process;0.0153165041838459!GO:0045893;positive regulation of transcription, DNA-dependent;0.0156848254061539!GO:0051272;positive regulation of cell motility;0.0157878327017322!GO:0040017;positive regulation of locomotion;0.0157878327017322!GO:0000075;cell cycle checkpoint;0.0160046897360677!GO:0048146;positive regulation of fibroblast proliferation;0.0160258905548683!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0160412122746379!GO:0010257;NADH dehydrogenase complex assembly;0.0160412122746379!GO:0033108;mitochondrial respiratory chain complex assembly;0.0160412122746379!GO:0031529;ruffle organization and biogenesis;0.0161117792014239!GO:0005832;chaperonin-containing T-complex;0.01655267037376!GO:0009166;nucleotide catabolic process;0.0170527605766548!GO:0006405;RNA export from nucleus;0.0170734340552332!GO:0003746;translation elongation factor activity;0.0171023417246501!GO:0033673;negative regulation of kinase activity;0.017926749170913!GO:0006469;negative regulation of protein kinase activity;0.017926749170913!GO:0006505;GPI anchor metabolic process;0.0181858500579095!GO:0031326;regulation of cellular biosynthetic process;0.0181898507212479!GO:0043022;ribosome binding;0.0182782522170349!GO:0051059;NF-kappaB binding;0.0182782522170349!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0190045357401782!GO:0015002;heme-copper terminal oxidase activity;0.0190045357401782!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0190045357401782!GO:0004129;cytochrome-c oxidase activity;0.0190045357401782!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0190309746954437!GO:0009116;nucleoside metabolic process;0.0191679322973785!GO:0009112;nucleobase metabolic process;0.0192677725256524!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0194107310364034!GO:0046365;monosaccharide catabolic process;0.0197188105262107!GO:0005657;replication fork;0.0197714729467638!GO:0030833;regulation of actin filament polymerization;0.0199271767927105!GO:0006354;RNA elongation;0.0199362363736001!GO:0051087;chaperone binding;0.0199571606862271!GO:0016791;phosphoric monoester hydrolase activity;0.0200594519990787!GO:0005637;nuclear inner membrane;0.0200633519857059!GO:0007050;cell cycle arrest;0.020554114655174!GO:0055092;sterol homeostasis;0.0215537301021746!GO:0042632;cholesterol homeostasis;0.0215537301021746!GO:0008538;proteasome activator activity;0.021554473764856!GO:0005975;carbohydrate metabolic process;0.0215666578032208!GO:0051348;negative regulation of transferase activity;0.0216585137073905!GO:0051716;cellular response to stimulus;0.0220148143183787!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0231246844687065!GO:0005856;cytoskeleton;0.0237206346197203!GO:0030521;androgen receptor signaling pathway;0.0240168034463661!GO:0030433;ER-associated protein catabolic process;0.0240424338603519!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0240424338603519!GO:0006783;heme biosynthetic process;0.0241573282972073!GO:0007040;lysosome organization and biogenesis;0.0242331434627863!GO:0045334;clathrin-coated endocytic vesicle;0.0242733215294378!GO:0008361;regulation of cell size;0.0242733215294378!GO:0001558;regulation of cell growth;0.0252720792130609!GO:0012506;vesicle membrane;0.0254899393781318!GO:0046426;negative regulation of JAK-STAT cascade;0.0259259140097896!GO:0030134;ER to Golgi transport vesicle;0.0261756524727792!GO:0045926;negative regulation of growth;0.0266165231154631!GO:0048500;signal recognition particle;0.0270322461631789!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0271039372115253!GO:0000030;mannosyltransferase activity;0.0278727684528354!GO:0016741;transferase activity, transferring one-carbon groups;0.0278727684528354!GO:0019206;nucleoside kinase activity;0.0280770145120258!GO:0030128;clathrin coat of endocytic vesicle;0.0281796463994986!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0281796463994986!GO:0030122;AP-2 adaptor complex;0.0281796463994986!GO:0046519;sphingoid metabolic process;0.0285618454009372!GO:0003678;DNA helicase activity;0.0285618454009372!GO:0055088;lipid homeostasis;0.0286007547162976!GO:0004680;casein kinase activity;0.0287700587908054!GO:0009308;amine metabolic process;0.0289778211748003!GO:0033559;unsaturated fatty acid metabolic process;0.029210432644529!GO:0006636;unsaturated fatty acid biosynthetic process;0.029210432644529!GO:0004527;exonuclease activity;0.0292335661467385!GO:0006984;ER-nuclear signaling pathway;0.0293628109048486!GO:0046983;protein dimerization activity;0.0293628109048486!GO:0030384;phosphoinositide metabolic process;0.0296385740102303!GO:0019320;hexose catabolic process;0.0296794723714963!GO:0005869;dynactin complex;0.0298350647022369!GO:0007242;intracellular signaling cascade;0.0300816488914518!GO:0005862;muscle thin filament tropomyosin;0.0300830220302195!GO:0016049;cell growth;0.0302431385269448!GO:0007265;Ras protein signal transduction;0.0304590748530069!GO:0007346;regulation of progression through mitotic cell cycle;0.0304613608166701!GO:0003756;protein disulfide isomerase activity;0.0304613608166701!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0304613608166701!GO:0051235;maintenance of localization;0.0306587693831407!GO:0043189;H4/H2A histone acetyltransferase complex;0.0308600609158921!GO:0051128;regulation of cellular component organization and biogenesis;0.0308600609158921!GO:0031301;integral to organelle membrane;0.0311911353771056!GO:0032508;DNA duplex unwinding;0.0312581237508338!GO:0032392;DNA geometric change;0.0312581237508338!GO:0043086;negative regulation of catalytic activity;0.0313967598962217!GO:0050178;phenylpyruvate tautomerase activity;0.0319117873756563!GO:0009451;RNA modification;0.0319927335149589!GO:0042987;amyloid precursor protein catabolic process;0.0327121995245029!GO:0045792;negative regulation of cell size;0.0330886385530895!GO:0032507;maintenance of cellular protein localization;0.0331683634202918!GO:0008168;methyltransferase activity;0.034710346088856!GO:0006739;NADP metabolic process;0.0347272871936177!GO:0008047;enzyme activator activity;0.0347956712675342!GO:0008203;cholesterol metabolic process;0.0350893009334844!GO:0046164;alcohol catabolic process;0.0351527804478798!GO:0030308;negative regulation of cell growth;0.0351527804478798!GO:0035035;histone acetyltransferase binding;0.0351542971820816!GO:0003690;double-stranded DNA binding;0.0358859561172416!GO:0050750;low-density lipoprotein receptor binding;0.0359306499049073!GO:0031124;mRNA 3'-end processing;0.0361199745694229!GO:0004532;exoribonuclease activity;0.0363019443342955!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0363019443342955!GO:0005874;microtubule;0.0371285899735132!GO:0006897;endocytosis;0.0375516630704395!GO:0010324;membrane invagination;0.0375516630704395!GO:0006376;mRNA splice site selection;0.0378391737507231!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0378391737507231!GO:0030032;lamellipodium biogenesis;0.0378391737507231!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0383067373804231!GO:0008312;7S RNA binding;0.0389239120539848!GO:0005092;GDP-dissociation inhibitor activity;0.0389239120539848!GO:0000287;magnesium ion binding;0.0389239120539848!GO:0007033;vacuole organization and biogenesis;0.0389239120539848!GO:0004177;aminopeptidase activity;0.0389710787324145!GO:0008426;protein kinase C inhibitor activity;0.0392484646764063!GO:0035267;NuA4 histone acetyltransferase complex;0.0400428345161706!GO:0004674;protein serine/threonine kinase activity;0.0401474661201898!GO:0046966;thyroid hormone receptor binding;0.0402135729185054!GO:0009119;ribonucleoside metabolic process;0.0405969110015972!GO:0043281;regulation of caspase activity;0.0410560177660583!GO:0006769;nicotinamide metabolic process;0.0419025014030096!GO:0051537;2 iron, 2 sulfur cluster binding;0.0424798951789658!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0425226388503612!GO:0009303;rRNA transcription;0.0425226388503612!GO:0006458;'de novo' protein folding;0.0436228449928317!GO:0051084;'de novo' posttranslational protein folding;0.0436228449928317!GO:0043154;negative regulation of caspase activity;0.0440075382594578!GO:0016311;dephosphorylation;0.0440522830425902!GO:0016363;nuclear matrix;0.0442077710450515!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0442077710450515!GO:0030127;COPII vesicle coat;0.044299510926026!GO:0012507;ER to Golgi transport vesicle membrane;0.044299510926026!GO:0016584;nucleosome positioning;0.0452726894183772!GO:0051881;regulation of mitochondrial membrane potential;0.0453766621692031!GO:0008094;DNA-dependent ATPase activity;0.0454409860520487!GO:0006596;polyamine biosynthetic process;0.0461022115724847!GO:0030041;actin filament polymerization;0.048368234871652!GO:0000209;protein polyubiquitination;0.0485270473447964!GO:0006629;lipid metabolic process;0.0491143554955769 | |||
|sample_id=11441 | |sample_id=11441 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=trachea | |sample_tissue=trachea | ||
|top_motifs=PPARG:2.66882242014;POU2F1..3:2.60689269201;TP53:2.06712367558;NR5A1,2:1.92016215289;TBX4,5:1.807129378;ZEB1:1.74275173258;VSX1,2:1.74089773806;MYOD1:1.57091956367;SNAI1..3:1.45801319394;ZNF148:1.3273899442;PAX1,9:1.2745569293;TBP:1.25463675013;XCPE1{core}:1.07233238911;GTF2A1,2:1.00687488442;RXRA_VDR{dimer}:0.929793048384;LMO2:0.806394641039;HOX{A5,B5}:0.777598947443;TFAP2{A,C}:0.748523298822;ESRRA:0.729572306136;TEAD1:0.722318695658;MTF1:0.712457470197;bHLH_family:0.677147965838;FOS_FOS{B,L1}_JUN{B,D}:0.670035639784;TFCP2:0.664665774838;CEBPA,B_DDIT3:0.634895692866;POU6F1:0.625875823606;BACH2:0.622657147082;AR:0.622231098958;GFI1B:0.605291952278;PBX1:0.603283389118;GLI1..3:0.586401754243;TLX1..3_NFIC{dimer}:0.536358005377;ZNF423:0.528425415046;NFIL3:0.501843836577;EBF1:0.497872448746;HMX1:0.493762317269;HIF1A:0.478595091092;GZF1:0.476518054707;RXR{A,B,G}:0.445561471134;ZNF238:0.413344640566;IKZF1:0.413221938495;TFAP4:0.401793290595;NKX3-2:0.396870769918;YY1:0.395291085741;HLF:0.363094800175;FOSL2:0.363020636397;SP1:0.361441602996;NANOG:0.346280441421;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.339508713577;ARID5B:0.329549043251;NKX2-3_NKX2-5:0.322228567035;ONECUT1,2:0.306280991358;HAND1,2:0.249657903321;POU1F1:0.231280935878;ZBTB6:0.203222617966;ELK1,4_GABP{A,B1}:0.198683471227;REST:0.198087877956;SOX{8,9,10}:0.187427582843;NFE2L1:0.181136845337;NFE2:0.176123619651;NR1H4:0.16613544008;POU3F1..4:0.159377057196;PAX8:0.153928354635;CRX:0.129335734345;ADNP_IRX_SIX_ZHX:0.128373714134;ESR1:0.125944063002;OCT4_SOX2{dimer}:0.108959409476;NFKB1_REL_RELA:0.0668626796556;GFI1:0.0594310927444;PAX2:0.0568792734876;SOX17:0.0449626781325;ATF4:0.0387581660536;NR6A1:0.0323069381848;GATA6:0.0223997148827;SPZ1:-0.0191849150827;HNF4A_NR2F1,2:-0.0386715301011;NR3C1:-0.0451669049118;HIC1:-0.0653697051681;LEF1_TCF7_TCF7L1,2:-0.0845773454401;POU5F1:-0.0850237575881;PAX5:-0.0916819625684;UFEwm:-0.0917603634093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.09904294614;STAT5{A,B}:-0.109242868135;FOXL1:-0.133640597618;TFDP1:-0.136507275355;CREB1:-0.14528769953;ETS1,2:-0.162576652903;HNF1A:-0.184235550879;NKX2-2,8:-0.1975386294;HES1:-0.201036787793;NFY{A,B,C}:-0.246971941668;ZNF143:-0.252281211282;SMAD1..7,9:-0.264311168808;IRF7:-0.268912556529;FOXQ1:-0.269237104063;TFAP2B:-0.270851556858;ZIC1..3:-0.301521920129;RBPJ:-0.302522951637;LHX3,4:-0.305007396996;JUN:-0.314731128678;STAT2,4,6:-0.315735160351;EP300:-0.319087452177;NFE2L2:-0.355645518837;RREB1:-0.373964307824;E2F1..5:-0.374740116845;SOX2:-0.384186352008;SRF:-0.387772928267;MED-1{core}:-0.391894314368;HOX{A4,D4}:-0.460870033354;MAFB:-0.46820098612;SPIB:-0.47708834556;CDC5L:-0.479620843691;GTF2I:-0.486559882303;RUNX1..3:-0.498664945241;MEF2{A,B,C,D}:-0.515480280048;MAZ:-0.517550753852;ELF1,2,4:-0.531151773926;RORA:-0.541718694892;CUX2:-0.552835916881;ATF5_CREB3:-0.561565923321;SPI1:-0.577081816306;MYB:-0.608256243393;ATF2:-0.613965761365;TLX2:-0.614561947279;TAL1_TCF{3,4,12}:-0.633622513195;AHR_ARNT_ARNT2:-0.644792184879;NANOG{mouse}:-0.666469075227;GCM1,2:-0.673234971658;RFX1:-0.684394536354;FOXN1:-0.692058113811;T:-0.69704062248;KLF4:-0.710021467497;ATF6:-0.730845922703;PITX1..3:-0.738690383211;NFIX:-0.744493871529;EN1,2:-0.746455819446;NHLH1,2:-0.76178323062;NRF1:-0.772421638189;HSF1,2:-0.790111242334;FOXM1:-0.820005244891;HOX{A6,A7,B6,B7}:-0.847699411736;TOPORS:-0.861838184106;FOX{F1,F2,J1}:-0.870285865871;ALX1:-0.882167901587;PATZ1:-0.893837775942;PRRX1,2:-0.898122360639;MYBL2:-0.903086099985;PAX4:-0.916257258006;NFATC1..3:-0.943831492204;RFX2..5_RFXANK_RFXAP:-0.959912148065;HOXA9_MEIS1:-0.984257780783;ZFP161:-1.00026922694;MZF1:-1.01268314233;ALX4:-1.02915401049;MYFfamily:-1.0406863237;MTE{core}:-1.05154096247;EGR1..3:-1.11084294493;NKX2-1,4:-1.12764806286;AIRE:-1.15003526915;TEF:-1.17252870978;PAX3,7:-1.17427656135;FOXA2:-1.1770355636;FOX{I1,J2}:-1.19446991317;XBP1:-1.22185604661;PAX6:-1.2221252163;IRF1,2:-1.23762941697;DMAP1_NCOR{1,2}_SMARC:-1.28087602289;BREu{core}:-1.31857453565;FOXO1,3,4:-1.33040004655;TGIF1:-1.34952250808;STAT1,3:-1.37827384233;PDX1:-1.37883656637;PRDM1:-1.38764393318;CDX1,2,4:-1.40381324222;SOX5:-1.42809391173;FOX{D1,D2}:-1.44729480462;FOXP3:-1.5007266671;ZNF384:-1.52451078927;EVI1:-1.5471623422;SREBF1,2:-1.63846503704;FOXP1:-1.66715442771;NKX3-1:-1.70961572994;ZBTB16:-1.77854040299;BPTF:-1.80806839807;HBP1_HMGB_SSRP1_UBTF:-1.81582279654;NKX6-1,2:-1.91597822746;GATA4:-2.0412756469;DBP:-2.06646963669;FOXD3:-2.06978069434;HMGA1,2:-2.24113858768;IKZF2:-2.27104570117 | |top_motifs=PPARG:2.66882242014;POU2F1..3:2.60689269201;TP53:2.06712367558;NR5A1,2:1.92016215289;TBX4,5:1.807129378;ZEB1:1.74275173258;VSX1,2:1.74089773806;MYOD1:1.57091956367;SNAI1..3:1.45801319394;ZNF148:1.3273899442;PAX1,9:1.2745569293;TBP:1.25463675013;XCPE1{core}:1.07233238911;GTF2A1,2:1.00687488442;RXRA_VDR{dimer}:0.929793048384;LMO2:0.806394641039;HOX{A5,B5}:0.777598947443;TFAP2{A,C}:0.748523298822;ESRRA:0.729572306136;TEAD1:0.722318695658;MTF1:0.712457470197;bHLH_family:0.677147965838;FOS_FOS{B,L1}_JUN{B,D}:0.670035639784;TFCP2:0.664665774838;CEBPA,B_DDIT3:0.634895692866;POU6F1:0.625875823606;BACH2:0.622657147082;AR:0.622231098958;GFI1B:0.605291952278;PBX1:0.603283389118;GLI1..3:0.586401754243;TLX1..3_NFIC{dimer}:0.536358005377;ZNF423:0.528425415046;NFIL3:0.501843836577;EBF1:0.497872448746;HMX1:0.493762317269;HIF1A:0.478595091092;GZF1:0.476518054707;RXR{A,B,G}:0.445561471134;ZNF238:0.413344640566;IKZF1:0.413221938495;TFAP4:0.401793290595;NKX3-2:0.396870769918;YY1:0.395291085741;HLF:0.363094800175;FOSL2:0.363020636397;SP1:0.361441602996;NANOG:0.346280441421;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.339508713577;ARID5B:0.329549043251;NKX2-3_NKX2-5:0.322228567035;ONECUT1,2:0.306280991358;HAND1,2:0.249657903321;POU1F1:0.231280935878;ZBTB6:0.203222617966;ELK1,4_GABP{A,B1}:0.198683471227;REST:0.198087877956;SOX{8,9,10}:0.187427582843;NFE2L1:0.181136845337;NFE2:0.176123619651;NR1H4:0.16613544008;POU3F1..4:0.159377057196;PAX8:0.153928354635;CRX:0.129335734345;ADNP_IRX_SIX_ZHX:0.128373714134;ESR1:0.125944063002;OCT4_SOX2{dimer}:0.108959409476;NFKB1_REL_RELA:0.0668626796556;GFI1:0.0594310927444;PAX2:0.0568792734876;SOX17:0.0449626781325;ATF4:0.0387581660536;NR6A1:0.0323069381848;GATA6:0.0223997148827;SPZ1:-0.0191849150827;HNF4A_NR2F1,2:-0.0386715301011;NR3C1:-0.0451669049118;HIC1:-0.0653697051681;LEF1_TCF7_TCF7L1,2:-0.0845773454401;POU5F1:-0.0850237575881;PAX5:-0.0916819625684;UFEwm:-0.0917603634093;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.09904294614;STAT5{A,B}:-0.109242868135;FOXL1:-0.133640597618;TFDP1:-0.136507275355;CREB1:-0.14528769953;ETS1,2:-0.162576652903;HNF1A:-0.184235550879;NKX2-2,8:-0.1975386294;HES1:-0.201036787793;NFY{A,B,C}:-0.246971941668;ZNF143:-0.252281211282;SMAD1..7,9:-0.264311168808;IRF7:-0.268912556529;FOXQ1:-0.269237104063;TFAP2B:-0.270851556858;ZIC1..3:-0.301521920129;RBPJ:-0.302522951637;LHX3,4:-0.305007396996;JUN:-0.314731128678;STAT2,4,6:-0.315735160351;EP300:-0.319087452177;NFE2L2:-0.355645518837;RREB1:-0.373964307824;E2F1..5:-0.374740116845;SOX2:-0.384186352008;SRF:-0.387772928267;MED-1{core}:-0.391894314368;HOX{A4,D4}:-0.460870033354;MAFB:-0.46820098612;SPIB:-0.47708834556;CDC5L:-0.479620843691;GTF2I:-0.486559882303;RUNX1..3:-0.498664945241;MEF2{A,B,C,D}:-0.515480280048;MAZ:-0.517550753852;ELF1,2,4:-0.531151773926;RORA:-0.541718694892;CUX2:-0.552835916881;ATF5_CREB3:-0.561565923321;SPI1:-0.577081816306;MYB:-0.608256243393;ATF2:-0.613965761365;TLX2:-0.614561947279;TAL1_TCF{3,4,12}:-0.633622513195;AHR_ARNT_ARNT2:-0.644792184879;NANOG{mouse}:-0.666469075227;GCM1,2:-0.673234971658;RFX1:-0.684394536354;FOXN1:-0.692058113811;T:-0.69704062248;KLF4:-0.710021467497;ATF6:-0.730845922703;PITX1..3:-0.738690383211;NFIX:-0.744493871529;EN1,2:-0.746455819446;NHLH1,2:-0.76178323062;NRF1:-0.772421638189;HSF1,2:-0.790111242334;FOXM1:-0.820005244891;HOX{A6,A7,B6,B7}:-0.847699411736;TOPORS:-0.861838184106;FOX{F1,F2,J1}:-0.870285865871;ALX1:-0.882167901587;PATZ1:-0.893837775942;PRRX1,2:-0.898122360639;MYBL2:-0.903086099985;PAX4:-0.916257258006;NFATC1..3:-0.943831492204;RFX2..5_RFXANK_RFXAP:-0.959912148065;HOXA9_MEIS1:-0.984257780783;ZFP161:-1.00026922694;MZF1:-1.01268314233;ALX4:-1.02915401049;MYFfamily:-1.0406863237;MTE{core}:-1.05154096247;EGR1..3:-1.11084294493;NKX2-1,4:-1.12764806286;AIRE:-1.15003526915;TEF:-1.17252870978;PAX3,7:-1.17427656135;FOXA2:-1.1770355636;FOX{I1,J2}:-1.19446991317;XBP1:-1.22185604661;PAX6:-1.2221252163;IRF1,2:-1.23762941697;DMAP1_NCOR{1,2}_SMARC:-1.28087602289;BREu{core}:-1.31857453565;FOXO1,3,4:-1.33040004655;TGIF1:-1.34952250808;STAT1,3:-1.37827384233;PDX1:-1.37883656637;PRDM1:-1.38764393318;CDX1,2,4:-1.40381324222;SOX5:-1.42809391173;FOX{D1,D2}:-1.44729480462;FOXP3:-1.5007266671;ZNF384:-1.52451078927;EVI1:-1.5471623422;SREBF1,2:-1.63846503704;FOXP1:-1.66715442771;NKX3-1:-1.70961572994;ZBTB16:-1.77854040299;BPTF:-1.80806839807;HBP1_HMGB_SSRP1_UBTF:-1.81582279654;NKX6-1,2:-1.91597822746;GATA4:-2.0412756469;DBP:-2.06646963669;FOXD3:-2.06978069434;HMGA1,2:-2.24113858768;IKZF2:-2.27104570117 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11441-118I1;search_select_hide=table117:FF:11441-118I1 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Tracheal Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12051 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12051
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12051
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.574 |
| 10 | 10 | 0.913 |
| 100 | 100 | 0.365 |
| 101 | 101 | 0.00104 |
| 102 | 102 | 0.258 |
| 103 | 103 | 0.135 |
| 104 | 104 | 0.22 |
| 105 | 105 | 0.0617 |
| 106 | 106 | 0.021 |
| 107 | 107 | 0.052 |
| 108 | 108 | 0.383 |
| 109 | 109 | 0.00288 |
| 11 | 11 | 0.0398 |
| 110 | 110 | 0.0545 |
| 111 | 111 | 0.894 |
| 112 | 112 | 0.425 |
| 113 | 113 | 0.595 |
| 114 | 114 | 0.369 |
| 115 | 115 | 0.439 |
| 116 | 116 | 0.417 |
| 117 | 117 | 0.277 |
| 118 | 118 | 0.938 |
| 119 | 119 | 0.209 |
| 12 | 12 | 0.264 |
| 120 | 120 | 0.337 |
| 121 | 121 | 0.815 |
| 122 | 122 | 0.0507 |
| 123 | 123 | 0.552 |
| 124 | 124 | 0.487 |
| 125 | 125 | 0.513 |
| 126 | 126 | 0.333 |
| 127 | 127 | 0.0655 |
| 128 | 128 | 0.24 |
| 129 | 129 | 0.205 |
| 13 | 13 | 0.0593 |
| 130 | 130 | 0.141 |
| 131 | 131 | 0.211 |
| 132 | 132 | 0.666 |
| 133 | 133 | 0.00974 |
| 134 | 134 | 0.133 |
| 135 | 135 | 0.95 |
| 136 | 136 | 0.19 |
| 137 | 137 | 0.315 |
| 138 | 138 | 0.984 |
| 139 | 139 | 0.565 |
| 14 | 14 | 0.879 |
| 140 | 140 | 0.223 |
| 141 | 141 | 0.448 |
| 142 | 142 | 0.013 |
| 143 | 143 | 0.569 |
| 144 | 144 | 0.149 |
| 145 | 145 | 0.587 |
| 146 | 146 | 0.0284 |
| 147 | 147 | 0.0969 |
| 148 | 148 | 0.0733 |
| 149 | 149 | 0.543 |
| 15 | 15 | 0.755 |
| 150 | 150 | 0.234 |
| 151 | 151 | 0.5 |
| 152 | 152 | 0.0336 |
| 153 | 153 | 0.807 |
| 154 | 154 | 0.533 |
| 155 | 155 | 0.407 |
| 156 | 156 | 0.163 |
| 157 | 157 | 0.842 |
| 158 | 158 | 0.272 |
| 159 | 159 | 0.898 |
| 16 | 16 | 0.0988 |
| 160 | 160 | 0.085 |
| 161 | 161 | 0.254 |
| 162 | 162 | 0.237 |
| 163 | 163 | 0.539 |
| 164 | 164 | 0.765 |
| 165 | 165 | 0.467 |
| 166 | 166 | 0.114 |
| 167 | 167 | 0.333 |
| 168 | 168 | 0.944 |
| 169 | 169 | 0.0459 |
| 17 | 17 | 0.113 |
| 18 | 18 | 0.157 |
| 19 | 19 | 0.489 |
| 2 | 2 | 0.144 |
| 20 | 20 | 0.977 |
| 21 | 21 | 0.6 |
| 22 | 22 | 0.176 |
| 23 | 23 | 0.367 |
| 24 | 24 | 0.205 |
| 25 | 25 | 0.694 |
| 26 | 26 | 0.0402 |
| 27 | 27 | 0.298 |
| 28 | 28 | 0.934 |
| 29 | 29 | 0.141 |
| 3 | 3 | 0.478 |
| 30 | 30 | 0.111 |
| 31 | 31 | 0.452 |
| 32 | 32 | 0.565 |
| 33 | 33 | 0.142 |
| 34 | 34 | 0.51 |
| 35 | 35 | 0.857 |
| 36 | 36 | 0.36 |
| 37 | 37 | 0.21 |
| 38 | 38 | 0.252 |
| 39 | 39 | 0.425 |
| 4 | 4 | 0.406 |
| 40 | 40 | 0.0033 |
| 41 | 41 | 0.93 |
| 42 | 42 | 0.799 |
| 43 | 43 | 0.447 |
| 44 | 44 | 0.712 |
| 45 | 45 | 0.218 |
| 46 | 46 | 0.322 |
| 47 | 47 | 0.271 |
| 48 | 48 | 0.0849 |
| 49 | 49 | 0.724 |
| 5 | 5 | 0.579 |
| 50 | 50 | 0.575 |
| 51 | 51 | 0.763 |
| 52 | 52 | 0.258 |
| 53 | 53 | 0.585 |
| 54 | 54 | 0.92 |
| 55 | 55 | 0.953 |
| 56 | 56 | 0.428 |
| 57 | 57 | 0.399 |
| 58 | 58 | 0.816 |
| 59 | 59 | 0.0408 |
| 6 | 6 | 0.411 |
| 60 | 60 | 0.151 |
| 61 | 61 | 0.718 |
| 62 | 62 | 0.866 |
| 63 | 63 | 0.225 |
| 64 | 64 | 0.16 |
| 65 | 65 | 0.178 |
| 66 | 66 | 0.369 |
| 67 | 67 | 0.593 |
| 68 | 68 | 0.54 |
| 69 | 69 | 0.465 |
| 7 | 7 | 0.452 |
| 70 | 70 | 0.0139 |
| 71 | 71 | 0.156 |
| 72 | 72 | 0.964 |
| 73 | 73 | 0.0104 |
| 74 | 74 | 0.0752 |
| 75 | 75 | 0.226 |
| 76 | 76 | 0.851 |
| 77 | 77 | 0.00545 |
| 78 | 78 | 0.114 |
| 79 | 79 | 0.852 |
| 8 | 8 | 0.132 |
| 80 | 80 | 0.523 |
| 81 | 81 | 0.291 |
| 82 | 82 | 0.776 |
| 83 | 83 | 0.913 |
| 84 | 84 | 0.386 |
| 85 | 85 | 0.666 |
| 86 | 86 | 0.728 |
| 87 | 87 | 0.00616 |
| 88 | 88 | 0.78 |
| 89 | 89 | 0.0788 |
| 9 | 9 | 0.618 |
| 90 | 90 | 0.0477 |
| 91 | 91 | 0.241 |
| 92 | 92 | 0.967 |
| 93 | 93 | 0.91 |
| 94 | 94 | 0.997 |
| 95 | 95 | 0.0138 |
| 96 | 96 | 0.736 |
| 97 | 97 | 0.889 |
| 98 | 98 | 0.296 |
| 99 | 99 | 0.0387 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12051
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)
