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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008362
|DRA_sample_Accession=CAGE@SAMD00005106
|accession_numbers=CAGE;DRX008470;DRR009342;DRZ000767;DRZ002152
|accession_numbers=CAGE;DRX008470;DRR009342;DRZ000767;DRZ002152;DRZ012117;DRZ013502
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.06!113.96!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.74!53.94!TCF21;;chr11:46299199..46299233,+!p1@CREB3L1!1.40!120.05!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.39!39.15!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.15!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.37!27.84!FOXF1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!28.71!PRRX1;;chr20:6748325..6748352,+!p1@BMP2!1.32!28.71!BMP2;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.62!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.32!20.01!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.28!528.92!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!1.28!74.81!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.71!TWIST2;;chr2:239756671..239756732,+!p1@TWIST2!1.23!51.33!TWIST2;;chr18:53068911..53068935,-!p4@TCF4!1.22!17.40!TCF4;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.29!HHEX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!20.01!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.49!TCF12;;chr5:72744594..72744609,-!p1@FOXD1!1.17!62.64!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.05!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.55!DRAP1;;chr7:27153454..27153469,-!p2@HOXA3!1.12!12.18!HOXA3;;chr5:72744445..72744466,-!p2@FOXD1!1.10!19.14!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.09!11.31!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.07!41.76!FOSL1;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.44!PRRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.84!HMGA2;;chr15:67418119..67418162,+!p5@SMAD3!1.05!11.31!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.11!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!93.08!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!1.02!11.31!FOXD1;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.57!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.99!8.70!RFX8;;chr12:53614115..53614154,-!p1@RARG!0.95!43.50!RARG;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.27!HOXB2;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.83!PRRX1;;chr2:102091478..102091490,-!p3@RFX8!0.95!7.83!RFX8;;chr7:35293685..35293718,-!p1@TBX20!0.95!7.83!TBX20;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.72!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!0.94!9.57!ZBTB38;;chr15:96869114..96869160,+!p11@NR2F2!0.93!10.44!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.57!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.83!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.44!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.90!6.96!NPAS1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.96!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.15!CREB3;;chr17:59477233..59477263,+!p1@TBX2!0.89!21.75!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.87!9.57!SATB2;;chr12:115121962..115121987,-!p1@TBX3!0.85!54.81!TBX3;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.40!OSR1;;chr2:121493425..121493474,+!p1@GLI2!0.85!13.92!GLI2;;chr8:25902876..25902936,-!p1@EBF2!0.85!6.09!EBF2;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.07!NCOR2;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.71!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.14!GATA6;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.80!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.81!15.66!HOXB2;;chr15:67418047..67418093,+!p4@SMAD3!0.81!6.96!SMAD3;;chr16:86600426..86600441,+!p1@FOXC2!0.80!13.92!FOXC2;;chr6:34204672..34204692,+!p1@HMGA1!0.79!633.31!HMGA1;;chr5:321810..321877,+!p1@AHRR!0.79!17.40!AHRR;;chr15:67418177..67418204,+!p9@SMAD3!0.79!5.22!SMAD3;;chr17:46671108..46671147,-!p1@HOXB5!0.79!5.22!HOXB5;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.22!KDM5D;;chr1:170633058..170633084,+!p5@PRRX1!0.79!5.22!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.78!13.92!ZFPM2;;chr2:85981222..85981259,+!p2@ATOH8!0.78!8.70!ATOH8;;chr17:46655704..46655718,-!p2@HOXB4!0.78!7.83!HOXB4;;chr11:65687243..65687276,+!p8@DRAP1!0.78!6.96!DRAP1;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!13.92!ARNTL2;;chr14:24837368..24837401,+!p1@NFATC4!0.77!12.18!NFATC4;;chr11:120107344..120107351,+!p1@POU2F3!0.77!6.09!POU2F3;;chr11:46299186..46299195,+!p3@CREB3L1!0.75!5.22!CREB3L1;;chr6:35310395..35310410,+!p2@PPARD!0.74!19.14!PPARD;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.22!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.73!60.90!ZC3H12A;;chr11:46299443..46299459,+!p4@CREB3L1!0.73!4.35!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.73!4.35!TBX3;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.35!HOXA4;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr3:25469815..25469866,+!p3@RARB!0.73!4.35!RARB;;chr7:44143925..44143970,+!p1@AEBP1!0.71!103.52!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.77!CREB3;;chr10:94449675..94449694,+!p2@HHEX!0.71!12.18!HHEX;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.31!TWIST1;;chr21:36260343..36260402,-!p6@RUNX1!0.71!6.96!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.70!43.50!HIF1A;;chr17:1958388..1958404,+!p1@HIC1!0.70!28.71!HIC1;;chr12:66218212..66218244,+!p5@HMGA2!0.70!6.09!HMGA2;;chr11:65686952..65686975,+!p5@DRAP1!0.69!24.36!DRAP1;;chr17:1959369..1959388,+!p2@HIC1!0.69!11.31!HIC1;;chr3:5021268..5021282,+!p4@BHLHE40!0.69!8.70!BHLHE40;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.96!GLI2;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.22!BCL3;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.09!HOXB2;;chr14:62162285..62162296,+!p3@HIF1A!0.67!21.75!HIF1A;;chr20:39946361..39946379,-!p2@ZHX3!0.67!12.18!ZHX3;;chr10:77161133..77161176,-!p3@ZNF503!0.67!8.70!ZNF503;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.09!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.67!6.09!TSHZ3;;chr17:46675420..46675465,-!p3@HOXB6!0.67!4.35!HOXB6;;chr1:164528445..164528459,+!p2@PBX1!0.65!12.18!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.65!7.83!VAX2;;chr4:81104985..81105005,+!p4@PRDM8!0.65!4.35!PRDM8;;chr5:72744336..72744359,-!p5@FOXD1!0.65!3.48!FOXD1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.48!HOXA2;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.48!HOXA3;;chr7:35293665..35293680,-!p2@TBX20!0.65!3.48!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.65!3.48!SOX17;;chrY:2803415..2803468,+!p1@ZFY!0.65!3.48!ZFY;;chr1:170632115..170632136,+!p9@PRRX1!0.65!3.48!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.65!3.48!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.65!3.48!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.65!3.48!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.65!3.48!PRRX1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.48!SMAD3;;chr17:46659728..46659749,-!p3@HOXB3!0.65!3.48!HOXB3;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.48!NFIX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!283.60!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.71!ZMAT3;;chr7:14029283..14029311,-!p1@ETV1!0.64!20.88!ETV1;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.35!FOXD1;;chr20:30193083..30193098,+!p1@ID1!0.63!317.53!ID1;;chr10:77161504..77161530,-!p1@ZNF503!0.63!52.20!ZNF503;;chr12:27485785..27485816,+!p1@ARNTL2!0.63!26.97!ARNTL2;;chr20:42543441..42543497,+!p1@TOX2!0.62!16.53!TOX2;;chr12:27485823..27485868,+!p2@ARNTL2!0.62!14.79!ARNTL2;;chr2:185463247..185463263,+!p1@ZNF804A!0.62!6.09!ZNF804A;;chr10:35484804..35484902,+!p2@CREM!0.61!13.92!CREM;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.09!ZFP106;;chr8:72756667..72756736,-!p2@MSC!0.61!5.22!MSC;;chr19:13136130..13136165,+!p6@NFIX!0.61!4.35!NFIX;;chr1:23885981..23886002,-!p1@ID3!0.60!631.57!ID3;;chr6:34204973..34204990,+!p4@HMGA1!0.60!47.85!HMGA1;;chr1:151032860..151032918,+!p1@MLLT11!0.60!42.63!MLLT11;;chr3:141087393..141087426,+!p3@ZBTB38!0.60!13.92!ZBTB38;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.83!MAFF;;chr15:96873861..96873872,+!p9@NR2F2!0.60!6.96!NR2F2;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.22!MECOM;;chr9:35732514..35732530,+!p5@CREB3!0.59!4.35!CREB3;;chr2:28616358..28616380,+!p3@FOSL2!0.58!17.40!FOSL2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.35!NCOR2;;chr9:35732561..35732587,+!p3@CREB3!0.57!13.92!CREB3;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.22!TBX2;;chr12:54447599..54447630,+!p3@HOXC4!0.57!3.48!HOXC4;;chr22:38598086..38598105,+!p1@MAFF!0.56!34.80!MAFF;;chr9:4300050..4300118,-!p1@GLIS3!0.56!20.88!GLIS3;;chr6:106534192..106534224,+!p1@PRDM1!0.56!8.70!PRDM1;;chr19:13134457..13134462,+!p5@NFIX!0.56!5.22!NFIX;;chr3:141121847..141121868,+!p5@ZBTB38!0.56!4.35!ZBTB38;;chr15:67358269..67358272,+!p15@SMAD3!0.56!3.48!SMAD3;;chr19:38720294..38720348,-!p1@DPF1!0.56!3.48!DPF1;;chr15:67458491..67458505,+!p18@SMAD3!0.56!2.61!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.56!2.61!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.61!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.56!2.61!FOXC2;;chr17:17740823..17740833,-!p8@SREBF1!0.56!2.61!SREBF1;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr11:125034605..125034636,+!p2@PKNOX2!0.56!2.61!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.56!2.61!PKNOX2;;chr12:124873824..124873833,-!p19@NCOR2!0.56!2.61!NCOR2;;chr12:66218420..66218439,+!p12@HMGA2!0.56!2.61!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.61!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.56!2.61!PAWR;;chr2:102091144..102091183,-!p2@RFX8!0.56!2.61!RFX8;;chr2:19558327..19558334,-!p2@OSR1!0.56!2.61!OSR1;;chr3:141087562..141087594,+!p12@ZBTB38!0.56!2.61!ZBTB38;;chr4:174451350..174451363,-!p3@HAND2!0.56!2.61!HAND2;;chr4:26322673..26322684,+!p11@RBPJ!0.56!2.61!RBPJ;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.61!BNC2;;chr15:96869255..96869291,+!p6@NR2F2!0.55!5.22!NR2F2;;chr3:168865194..168865245,-!p3@MECOM!0.55!3.48!MECOM;;chr8:106330696..106330719,+!p2@ZFPM2!0.55!3.48!ZFPM2;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.50!PCBP4;;chr20:48599506..48599526,+!p1@SNAI1!0.54!20.01!SNAI1;;chr3:178789648..178789661,-!p4@ZMAT3!0.54!4.35!ZMAT3;;chr2:85980951..85981004,+!p1@ATOH8!0.53!4.35!ATOH8;;chr21:36260295..36260310,-!p3@RUNX1!0.53!4.35!RUNX1;;chr17:46621101..46621143,-!p7@HOXB2!0.53!3.48!HOXB2;;chr12:77459306..77459365,-!p1@E2F7!0.52!37.41!E2F7;;chr7:17338324..17338341,+!p3@AHR!0.52!9.57!AHR;;chr21:36259445..36259519,-!p4@RUNX1!0.52!7.83!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!0.52!6.96!BCL3;;chr1:151032922..151032951,+!p2@MLLT11!0.52!4.35!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.51!220.9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|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.06!113.96!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.74!53.94!TCF21;;chr11:46299199..46299233,+!p1@CREB3L1!1.40!120.05!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.39!39.15!CREB3L1;;chr11:65686802..65686818,+!p6@DRAP1!1.38!39.15!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.37!27.84!FOXF1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!28.71!PRRX1;;chr20:6748325..6748352,+!p1@BMP2!1.32!28.71!BMP2;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.62!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.32!20.01!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!1.28!528.92!HMGA1;;chr11:65686732..65686756,+!p2@DRAP1!1.28!74.81!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.71!TWIST2;;chr2:239756671..239756732,+!p1@TWIST2!1.23!51.33!TWIST2;;chr18:53068911..53068935,-!p4@TCF4!1.22!17.40!TCF4;;chr10:94449703..94449718,+!p1@HHEX!1.21!58.29!HHEX;;chr9:132427972..132428056,+!p1@PRRX2!1.21!20.01!PRRX2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.49!TCF12;;chr5:72744594..72744609,-!p1@FOXD1!1.17!62.64!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.05!HAND2;;chr11:65687362..65687436,+!p3@DRAP1!1.13!56.55!DRAP1;;chr7:27153454..27153469,-!p2@HOXA3!1.12!12.18!HOXA3;;chr5:72744445..72744466,-!p2@FOXD1!1.10!19.14!FOXD1;;chr11:34642612..34642646,+!p1@EHF!1.09!11.31!EHF;;chr11:65667884..65667895,-!p2@FOSL1!1.07!41.76!FOSL1;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.44!PRRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.84!HMGA2;;chr15:67418119..67418162,+!p5@SMAD3!1.05!11.31!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.11!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!93.08!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!1.02!11.31!FOXD1;;chr7:1577899..1577943,+!p3@MAFK!1.02!9.57!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.99!8.70!RFX8;;chr12:53614115..53614154,-!p1@RARG!0.95!43.50!RARG;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.27!HOXB2;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.83!PRRX1;;chr2:102091478..102091490,-!p3@RFX8!0.95!7.83!RFX8;;chr7:35293685..35293718,-!p1@TBX20!0.95!7.83!TBX20;;chr12:124873852..124873881,-!p3@NCOR2!0.94!48.72!NCOR2;;chr3:141105705..141105770,+!p4@ZBTB38!0.94!9.57!ZBTB38;;chr15:96869114..96869160,+!p11@NR2F2!0.93!10.44!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.92!9.57!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.83!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.90!10.44!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.90!6.96!NPAS1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.96!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.89!39.15!CREB3;;chr17:59477233..59477263,+!p1@TBX2!0.89!21.75!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.87!9.57!SATB2;;chr12:115121962..115121987,-!p1@TBX3!0.85!54.81!TBX3;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.40!OSR1;;chr2:121493425..121493474,+!p1@GLI2!0.85!13.92!GLI2;;chr8:25902876..25902936,-!p1@EBF2!0.85!6.09!EBF2;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.07!NCOR2;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.71!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.83!19.14!GATA6;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.80!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.81!15.66!HOXB2;;chr15:67418047..67418093,+!p4@SMAD3!0.81!6.96!SMAD3;;chr16:86600426..86600441,+!p1@FOXC2!0.80!13.92!FOXC2;;chr6:34204672..34204692,+!p1@HMGA1!0.79!633.31!HMGA1;;chr5:321810..321877,+!p1@AHRR!0.79!17.40!AHRR;;chr15:67418177..67418204,+!p9@SMAD3!0.79!5.22!SMAD3;;chr17:46671108..46671147,-!p1@HOXB5!0.79!5.22!HOXB5;;chrY:21906594..21906622,-!p1@KDM5D!0.79!5.22!KDM5D;;chr1:170633058..170633084,+!p5@PRRX1!0.79!5.22!PRRX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.78!13.92!ZFPM2;;chr2:85981222..85981259,+!p2@ATOH8!0.78!8.70!ATOH8;;chr17:46655704..46655718,-!p2@HOXB4!0.78!7.83!HOXB4;;chr11:65687243..65687276,+!p8@DRAP1!0.78!6.96!DRAP1;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!13.92!ARNTL2;;chr14:24837368..24837401,+!p1@NFATC4!0.77!12.18!NFATC4;;chr11:120107344..120107351,+!p1@POU2F3!0.77!6.09!POU2F3;;chr11:46299186..46299195,+!p3@CREB3L1!0.75!5.22!CREB3L1;;chr6:35310395..35310410,+!p2@PPARD!0.74!19.14!PPARD;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.22!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.73!60.90!ZC3H12A;;chr11:46299443..46299459,+!p4@CREB3L1!0.73!4.35!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.73!4.35!TBX3;;chr7:27169801..27169844,-!p2@HOXA4!0.73!4.35!HOXA4;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr3:25469815..25469866,+!p3@RARB!0.73!4.35!RARB;;chr7:44143925..44143970,+!p1@AEBP1!0.71!103.52!AEBP1;;chr9:35732592..35732640,+!p1@CREB3!0.71!61.77!CREB3;;chr10:94449675..94449694,+!p2@HHEX!0.71!12.18!HHEX;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.31!TWIST1;;chr21:36260343..36260402,-!p6@RUNX1!0.71!6.96!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.70!43.50!HIF1A;;chr17:1958388..1958404,+!p1@HIC1!0.70!28.71!HIC1;;chr12:66218212..66218244,+!p5@HMGA2!0.70!6.09!HMGA2;;chr11:65686952..65686975,+!p5@DRAP1!0.69!24.36!DRAP1;;chr17:1959369..1959388,+!p2@HIC1!0.69!11.31!HIC1;;chr3:5021268..5021282,+!p4@BHLHE40!0.69!8.70!BHLHE40;;chr2:121493492..121493537,+!p2@GLI2!0.69!6.96!GLI2;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.22!BCL3;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.09!HOXB2;;chr14:62162285..62162296,+!p3@HIF1A!0.67!21.75!HIF1A;;chr20:39946361..39946379,-!p2@ZHX3!0.67!12.18!ZHX3;;chr10:77161133..77161176,-!p3@ZNF503!0.67!8.70!ZNF503;;chr12:66218378..66218401,+!p6@HMGA2!0.67!6.09!HMGA2;;chr19:31840130..31840160,-!p2@TSHZ3!0.67!6.09!TSHZ3;;chr17:46675420..46675465,-!p3@HOXB6!0.67!4.35!HOXB6;;chr1:164528445..164528459,+!p2@PBX1!0.65!12.18!PBX1;;chr2:71127699..71127744,+!p1@VAX2!0.65!7.83!VAX2;;chr4:81104985..81105005,+!p4@PRDM8!0.65!4.35!PRDM8;;chr5:72744336..72744359,-!p5@FOXD1!0.65!3.48!FOXD1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.48!HOXA2;;chr7:27153590..27153608,-!p7@HOXA3!0.65!3.48!HOXA3;;chr7:35293665..35293680,-!p2@TBX20!0.65!3.48!TBX20;;chr8:55370720..55370733,+!p2@SOX17!0.65!3.48!SOX17;;chrY:2803415..2803468,+!p1@ZFY!0.65!3.48!ZFY;;chr1:170632115..170632136,+!p9@PRRX1!0.65!3.48!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.65!3.48!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.65!3.48!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.65!3.48!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.65!3.48!PRRX1;;chr15:67418099..67418118,+!p16@SMAD3!0.65!3.48!SMAD3;;chr17:46659728..46659749,-!p3@HOXB3!0.65!3.48!HOXB3;;chr19:13135582..13135600,+!p3@NFIX!0.65!3.48!NFIX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.64!283.60!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.71!ZMAT3;;chr7:14029283..14029311,-!p1@ETV1!0.64!20.88!ETV1;;chr5:72744562..72744573,-!p3@FOXD1!0.64!4.35!FOXD1;;chr20:30193083..30193098,+!p1@ID1!0.63!317.53!ID1;;chr10:77161504..77161530,-!p1@ZNF503!0.63!52.20!ZNF503;;chr12:27485785..27485816,+!p1@ARNTL2!0.63!26.97!ARNTL2;;chr20:42543441..42543497,+!p1@TOX2!0.62!16.53!TOX2;;chr12:27485823..27485868,+!p2@ARNTL2!0.62!14.79!ARNTL2;;chr2:185463247..185463263,+!p1@ZNF804A!0.62!6.09!ZNF804A;;chr10:35484804..35484902,+!p2@CREM!0.61!13.92!CREM;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.09!ZFP106;;chr8:72756667..72756736,-!p2@MSC!0.61!5.22!MSC;;chr19:13136130..13136165,+!p6@NFIX!0.61!4.35!NFIX;;chr1:23885981..23886002,-!p1@ID3!0.60!631.57!ID3;;chr6:34204973..34204990,+!p4@HMGA1!0.60!47.85!HMGA1;;chr1:151032860..151032918,+!p1@MLLT11!0.60!42.63!MLLT11;;chr3:141087393..141087426,+!p3@ZBTB38!0.60!13.92!ZBTB38;;chr22:38598057..38598071,+!p3@MAFF!0.60!7.83!MAFF;;chr15:96873861..96873872,+!p9@NR2F2!0.60!6.96!NR2F2;;chr3:168864315..168864339,-!p2@MECOM!0.59!5.22!MECOM;;chr9:35732514..35732530,+!p5@CREB3!0.59!4.35!CREB3;;chr2:28616358..28616380,+!p3@FOSL2!0.58!17.40!FOSL2;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.35!NCOR2;;chr9:35732561..35732587,+!p3@CREB3!0.57!13.92!CREB3;;chr17:59477197..59477212,+!p2@TBX2!0.57!5.22!TBX2;;chr12:54447599..54447630,+!p3@HOXC4!0.57!3.48!HOXC4;;chr22:38598086..38598105,+!p1@MAFF!0.56!34.80!MAFF;;chr9:4300050..4300118,-!p1@GLIS3!0.56!20.88!GLIS3;;chr6:106534192..106534224,+!p1@PRDM1!0.56!8.70!PRDM1;;chr19:13134457..13134462,+!p5@NFIX!0.56!5.22!NFIX;;chr3:141121847..141121868,+!p5@ZBTB38!0.56!4.35!ZBTB38;;chr15:67358269..67358272,+!p15@SMAD3!0.56!3.48!SMAD3;;chr19:38720294..38720348,-!p1@DPF1!0.56!3.48!DPF1;;chr15:67458491..67458505,+!p18@SMAD3!0.56!2.61!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.56!2.61!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.61!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.56!2.61!FOXC2;;chr17:17740823..17740833,-!p8@SREBF1!0.56!2.61!SREBF1;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr11:125034605..125034636,+!p2@PKNOX2!0.56!2.61!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.56!2.61!PKNOX2;;chr12:124873824..124873833,-!p19@NCOR2!0.56!2.61!NCOR2;;chr12:66218420..66218439,+!p12@HMGA2!0.56!2.61!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.56!2.61!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.56!2.61!PAWR;;chr2:102091144..102091183,-!p2@RFX8!0.56!2.61!RFX8;;chr2:19558327..19558334,-!p2@OSR1!0.56!2.61!OSR1;;chr3:141087562..141087594,+!p12@ZBTB38!0.56!2.61!ZBTB38;;chr4:174451350..174451363,-!p3@HAND2!0.56!2.61!HAND2;;chr4:26322673..26322684,+!p11@RBPJ!0.56!2.61!RBPJ;;chr9:16705069..16705086,-!p3@BNC2!0.56!2.61!BNC2;;chr15:96869255..96869291,+!p6@NR2F2!0.55!5.22!NR2F2;;chr3:168865194..168865245,-!p3@MECOM!0.55!3.48!MECOM;;chr8:106330696..106330719,+!p2@ZFPM2!0.55!3.48!ZFPM2;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.50!PCBP4;;chr20:48599506..48599526,+!p1@SNAI1!0.54!20.01!SNAI1;;chr3:178789648..178789661,-!p4@ZMAT3!0.54!4.35!ZMAT3;;chr2:85980951..85981004,+!p1@ATOH8!0.53!4.35!ATOH8;;chr21:36260295..36260310,-!p3@RUNX1!0.53!4.35!RUNX1;;chr17:46621101..46621143,-!p7@HOXB2!0.53!3.48!HOXB2;;chr12:77459306..77459365,-!p1@E2F7!0.52!37.41!E2F7;;chr7:17338324..17338341,+!p3@AHR!0.52!9.57!AHR;;chr21:36259445..36259519,-!p4@RUNX1!0.52!7.83!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!0.52!6.96!BCL3;;chr1:151032922..151032951,+!p2@MLLT11!0.52!4.35!MLLT11;;chr11:65686855..65686946,+!p1@DRAP1!0.51!220.9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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002539;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor3.CNhs11309.11432-118H1.hg38.nobarcode.ctss.bed.gz
|id=FF:11432-118H1
|id=FF:11432-118H1
|is_a=EFO:0002091;;FF:0000168
|is_a=EFO:0002091;;FF:0000168
|is_obsolete=
|is_obsolete=
|library_id=CNhs11309
|library_id=CNhs11309
|library_ids=CNhs11309
|library_id_phase_based=2:CNhs11309
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11432
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11432
|name=Smooth Muscle Cells - Aortic, donor3
|name=Smooth Muscle Cells - Aortic, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 61:
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|profile_cagescan=,,,
|profile_hcage=CNhs11309,LSID767,release009,COMPLETED
|profile_hcage=CNhs11309,LSID767,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 89: Line 101:
|top_motifs=ZNF238:1.4243773331;HIF1A:1.23508513769;CRX:1.20741536262;GZF1:1.11856627042;TLX1..3_NFIC{dimer}:1.11670276272;GTF2A1,2:1.03644032015;TP53:1.00477902035;TAL1_TCF{3,4,12}:0.979935873106;MAFB:0.979718208202;HOX{A5,B5}:0.968984018227;XCPE1{core}:0.925297406983;ZNF148:0.915074151334;TBP:0.828791999533;TFCP2:0.825043904251;SPZ1:0.82468902764;HES1:0.816436170984;MYBL2:0.811300217725;POU2F1..3:0.807393742638;TFAP4:0.790240976414;EBF1:0.732431086107;ONECUT1,2:0.694132197311;GFI1B:0.687375833837;POU6F1:0.684704594304;PBX1:0.649974386121;PRRX1,2:0.644479546353;TBX4,5:0.639315738872;LHX3,4:0.638884492467;HSF1,2:0.623244109404;NFE2L2:0.605657208204;XBP1:0.59821582516;ZBTB6:0.594698359036;ALX4:0.592301218761;bHLH_family:0.582783271143;HMX1:0.536061598807;BACH2:0.533455859206;TEAD1:0.528990239975;ZNF423:0.513598751297;FOX{I1,J2}:0.511222751832;SRF:0.511056492496;EN1,2:0.508055764034;GCM1,2:0.466406352247;POU1F1:0.462025371374;FOS_FOS{B,L1}_JUN{B,D}:0.451140702829;POU3F1..4:0.435871994959;NR3C1:0.429400434886;PPARG:0.41788958596;JUN:0.39693093331;FOSL2:0.391536299787;NFE2L1:0.390429316127;HAND1,2:0.386369917857;NANOG:0.368705752656;PAX1,9:0.35823437164;ADNP_IRX_SIX_ZHX:0.35374914229;NFATC1..3:0.3421585407;GTF2I:0.320298768842;TFAP2B:0.316161952377;GLI1..3:0.313248609821;TFAP2{A,C}:0.312153970049;FOXL1:0.307453934154;RXR{A,B,G}:0.307249088087;MTF1:0.30298250609;LEF1_TCF7_TCF7L1,2:0.291203009223;HOX{A6,A7,B6,B7}:0.286044827103;PAX8:0.283781307761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.281573614873;DBP:0.280273507812;HIC1:0.270966467843;ZNF384:0.259765884846;SOX{8,9,10}:0.251001329844;AHR_ARNT_ARNT2:0.240299190294;NR1H4:0.228018885826;AR:0.213752789223;ESRRA:0.210634852292;EGR1..3:0.197540375645;PATZ1:0.196920507757;IKZF1:0.193719012376;NFIX:0.186176467172;SP1:0.171255073799;SOX17:0.166640747731;NKX6-1,2:0.164592437817;ATF6:0.146945769475;NANOG{mouse}:0.134889610571;ELK1,4_GABP{A,B1}:0.134224760848;ZIC1..3:0.118376920088;TFDP1:0.116743937312;KLF4:0.109887973163;HLF:0.109380345957;NFE2:0.108485304061;SMAD1..7,9:0.0991132601095;POU5F1:0.0902261160204;NHLH1,2:0.089580619479;HNF1A:0.0868679951771;CDC5L:0.0790590020539;REST:0.0601276481054;NKX2-2,8:0.058484530509;NFIL3:0.0564826779124;NKX3-1:0.0553220721649;MEF2{A,B,C,D}:0.0528930118923;ALX1:0.0297315687749;HBP1_HMGB_SSRP1_UBTF:0.00474957293904;MZF1:0.00460676664418;PAX6:0.000755379484651;GFI1:-0.00465724459949;ESR1:-0.00981930751301;VSX1,2:-0.0200195796638;ZFP161:-0.0208657637202;MED-1{core}:-0.0238281858278;RUNX1..3:-0.0284974682912;ETS1,2:-0.0464494553374;MTE{core}:-0.0465920871952;MYFfamily:-0.0728532153137;RXRA_VDR{dimer}:-0.0753405573437;NFKB1_REL_RELA:-0.0852006072989;NR5A1,2:-0.0856674030496;PAX2:-0.095696892732;PAX5:-0.0987519520659;HMGA1,2:-0.100813833469;CEBPA,B_DDIT3:-0.108320886253;FOXN1:-0.122775261952;ZNF143:-0.127377492677;HOX{A4,D4}:-0.12837429013;PRDM1:-0.142836794385;NKX3-2:-0.149173145425;NKX2-3_NKX2-5:-0.149836992686;MAZ:-0.153321010223;E2F1..5:-0.161220188022;NRF1:-0.189875951523;HNF4A_NR2F1,2:-0.197985003585;SPIB:-0.212036538045;RFX1:-0.213288371827;ELF1,2,4:-0.220524349525;FOX{F1,F2,J1}:-0.238162345972;SOX2:-0.241494001506;MYB:-0.242654543029;ARID5B:-0.261935702354;GATA6:-0.2655168579;FOXQ1:-0.267284296198;OCT4_SOX2{dimer}:-0.269448491129;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278739400781;EVI1:-0.301527514679;STAT2,4,6:-0.33849344977;GATA4:-0.341483938871;SOX5:-0.346219933619;LMO2:-0.348199957453;EP300:-0.355428319371;TGIF1:-0.35642108538;CREB1:-0.361431419965;ATF5_CREB3:-0.36468361185;NKX2-1,4:-0.368311534371;ATF2:-0.369062338533;FOXP3:-0.371596995962;PAX3,7:-0.382822158607;PDX1:-0.399424033189;HOXA9_MEIS1:-0.402082724742;UFEwm:-0.412838240415;AIRE:-0.420671896793;CUX2:-0.423737351743;TLX2:-0.456360381179;YY1:-0.51663292861;NFY{A,B,C}:-0.521784024583;TOPORS:-0.540684985482;RREB1:-0.544537234926;SPI1:-0.553675436444;RORA:-0.556205538336;STAT5{A,B}:-0.588242572331;SREBF1,2:-0.619612651707;FOXM1:-0.648009865896;TEF:-0.681784454887;DMAP1_NCOR{1,2}_SMARC:-0.687212032514;T:-0.709422592857;ZBTB16:-0.738876272751;FOX{D1,D2}:-0.739173066044;ZEB1:-0.750399010022;IRF1,2:-0.751791687127;SNAI1..3:-0.760417661771;IRF7:-0.852834201317;NR6A1:-0.888523001922;BREu{core}:-0.894197655345;RFX2..5_RFXANK_RFXAP:-0.921665297015;PAX4:-0.947952982852;FOXA2:-0.957798061425;STAT1,3:-0.970187886692;PITX1..3:-1.00378268882;ATF4:-1.01625052253;CDX1,2,4:-1.08434554871;FOXO1,3,4:-1.11145501194;MYOD1:-1.1728324064;IKZF2:-1.1738745924;FOXP1:-1.3598649112;FOXD3:-1.40133372783;BPTF:-1.49864902148;RBPJ:-1.76367365564
|top_motifs=ZNF238:1.4243773331;HIF1A:1.23508513769;CRX:1.20741536262;GZF1:1.11856627042;TLX1..3_NFIC{dimer}:1.11670276272;GTF2A1,2:1.03644032015;TP53:1.00477902035;TAL1_TCF{3,4,12}:0.979935873106;MAFB:0.979718208202;HOX{A5,B5}:0.968984018227;XCPE1{core}:0.925297406983;ZNF148:0.915074151334;TBP:0.828791999533;TFCP2:0.825043904251;SPZ1:0.82468902764;HES1:0.816436170984;MYBL2:0.811300217725;POU2F1..3:0.807393742638;TFAP4:0.790240976414;EBF1:0.732431086107;ONECUT1,2:0.694132197311;GFI1B:0.687375833837;POU6F1:0.684704594304;PBX1:0.649974386121;PRRX1,2:0.644479546353;TBX4,5:0.639315738872;LHX3,4:0.638884492467;HSF1,2:0.623244109404;NFE2L2:0.605657208204;XBP1:0.59821582516;ZBTB6:0.594698359036;ALX4:0.592301218761;bHLH_family:0.582783271143;HMX1:0.536061598807;BACH2:0.533455859206;TEAD1:0.528990239975;ZNF423:0.513598751297;FOX{I1,J2}:0.511222751832;SRF:0.511056492496;EN1,2:0.508055764034;GCM1,2:0.466406352247;POU1F1:0.462025371374;FOS_FOS{B,L1}_JUN{B,D}:0.451140702829;POU3F1..4:0.435871994959;NR3C1:0.429400434886;PPARG:0.41788958596;JUN:0.39693093331;FOSL2:0.391536299787;NFE2L1:0.390429316127;HAND1,2:0.386369917857;NANOG:0.368705752656;PAX1,9:0.35823437164;ADNP_IRX_SIX_ZHX:0.35374914229;NFATC1..3:0.3421585407;GTF2I:0.320298768842;TFAP2B:0.316161952377;GLI1..3:0.313248609821;TFAP2{A,C}:0.312153970049;FOXL1:0.307453934154;RXR{A,B,G}:0.307249088087;MTF1:0.30298250609;LEF1_TCF7_TCF7L1,2:0.291203009223;HOX{A6,A7,B6,B7}:0.286044827103;PAX8:0.283781307761;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.281573614873;DBP:0.280273507812;HIC1:0.270966467843;ZNF384:0.259765884846;SOX{8,9,10}:0.251001329844;AHR_ARNT_ARNT2:0.240299190294;NR1H4:0.228018885826;AR:0.213752789223;ESRRA:0.210634852292;EGR1..3:0.197540375645;PATZ1:0.196920507757;IKZF1:0.193719012376;NFIX:0.186176467172;SP1:0.171255073799;SOX17:0.166640747731;NKX6-1,2:0.164592437817;ATF6:0.146945769475;NANOG{mouse}:0.134889610571;ELK1,4_GABP{A,B1}:0.134224760848;ZIC1..3:0.118376920088;TFDP1:0.116743937312;KLF4:0.109887973163;HLF:0.109380345957;NFE2:0.108485304061;SMAD1..7,9:0.0991132601095;POU5F1:0.0902261160204;NHLH1,2:0.089580619479;HNF1A:0.0868679951771;CDC5L:0.0790590020539;REST:0.0601276481054;NKX2-2,8:0.058484530509;NFIL3:0.0564826779124;NKX3-1:0.0553220721649;MEF2{A,B,C,D}:0.0528930118923;ALX1:0.0297315687749;HBP1_HMGB_SSRP1_UBTF:0.00474957293904;MZF1:0.00460676664418;PAX6:0.000755379484651;GFI1:-0.00465724459949;ESR1:-0.00981930751301;VSX1,2:-0.0200195796638;ZFP161:-0.0208657637202;MED-1{core}:-0.0238281858278;RUNX1..3:-0.0284974682912;ETS1,2:-0.0464494553374;MTE{core}:-0.0465920871952;MYFfamily:-0.0728532153137;RXRA_VDR{dimer}:-0.0753405573437;NFKB1_REL_RELA:-0.0852006072989;NR5A1,2:-0.0856674030496;PAX2:-0.095696892732;PAX5:-0.0987519520659;HMGA1,2:-0.100813833469;CEBPA,B_DDIT3:-0.108320886253;FOXN1:-0.122775261952;ZNF143:-0.127377492677;HOX{A4,D4}:-0.12837429013;PRDM1:-0.142836794385;NKX3-2:-0.149173145425;NKX2-3_NKX2-5:-0.149836992686;MAZ:-0.153321010223;E2F1..5:-0.161220188022;NRF1:-0.189875951523;HNF4A_NR2F1,2:-0.197985003585;SPIB:-0.212036538045;RFX1:-0.213288371827;ELF1,2,4:-0.220524349525;FOX{F1,F2,J1}:-0.238162345972;SOX2:-0.241494001506;MYB:-0.242654543029;ARID5B:-0.261935702354;GATA6:-0.2655168579;FOXQ1:-0.267284296198;OCT4_SOX2{dimer}:-0.269448491129;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278739400781;EVI1:-0.301527514679;STAT2,4,6:-0.33849344977;GATA4:-0.341483938871;SOX5:-0.346219933619;LMO2:-0.348199957453;EP300:-0.355428319371;TGIF1:-0.35642108538;CREB1:-0.361431419965;ATF5_CREB3:-0.36468361185;NKX2-1,4:-0.368311534371;ATF2:-0.369062338533;FOXP3:-0.371596995962;PAX3,7:-0.382822158607;PDX1:-0.399424033189;HOXA9_MEIS1:-0.402082724742;UFEwm:-0.412838240415;AIRE:-0.420671896793;CUX2:-0.423737351743;TLX2:-0.456360381179;YY1:-0.51663292861;NFY{A,B,C}:-0.521784024583;TOPORS:-0.540684985482;RREB1:-0.544537234926;SPI1:-0.553675436444;RORA:-0.556205538336;STAT5{A,B}:-0.588242572331;SREBF1,2:-0.619612651707;FOXM1:-0.648009865896;TEF:-0.681784454887;DMAP1_NCOR{1,2}_SMARC:-0.687212032514;T:-0.709422592857;ZBTB16:-0.738876272751;FOX{D1,D2}:-0.739173066044;ZEB1:-0.750399010022;IRF1,2:-0.751791687127;SNAI1..3:-0.760417661771;IRF7:-0.852834201317;NR6A1:-0.888523001922;BREu{core}:-0.894197655345;RFX2..5_RFXANK_RFXAP:-0.921665297015;PAX4:-0.947952982852;FOXA2:-0.957798061425;STAT1,3:-0.970187886692;PITX1..3:-1.00378268882;ATF4:-1.01625052253;CDX1,2,4:-1.08434554871;FOXO1,3,4:-1.11145501194;MYOD1:-1.1728324064;IKZF2:-1.1738745924;FOXP1:-1.3598649112;FOXD3:-1.40133372783;BPTF:-1.49864902148;RBPJ:-1.76367365564
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11432-118H1;search_select_hide=table117:FF:11432-118H1
}}
}}

Latest revision as of 18:00, 4 June 2020

Name:Smooth Muscle Cells - Aortic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11309
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage54 years old adult
sexmale
age54
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1441
catalog numberCA354-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005106
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11309 CAGE DRX008470 DRR009342
Accession ID Hg19

Library idBAMCTSS
CNhs11309 DRZ000767 DRZ002152
Accession ID Hg38

Library idBAMCTSS
CNhs11309 DRZ012117 DRZ013502
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.15
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.229
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.386
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.253
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.504
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.419
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.572
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.106
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.272
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.728
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11309

Jaspar motifP-value
MA0002.20.435
MA0003.10.343
MA0004.10.469
MA0006.10.251
MA0007.10.0643
MA0009.10.324
MA0014.10.934
MA0017.10.827
MA0018.20.0155
MA0019.10.278
MA0024.10.00895
MA0025.10.928
MA0027.10.316
MA0028.10.986
MA0029.10.308
MA0030.10.936
MA0031.10.22
MA0035.20.981
MA0038.10.759
MA0039.20.758
MA0040.10.47
MA0041.10.332
MA0042.10.694
MA0043.10.0361
MA0046.10.233
MA0047.20.137
MA0048.10.406
MA0050.11.17949e-6
MA0051.10.0199
MA0052.10.547
MA0055.10.22
MA0057.10.647
MA0058.10.222
MA0059.10.862
MA0060.10.413
MA0061.10.548
MA0062.20.161
MA0065.20.242
MA0066.10.867
MA0067.10.0447
MA0068.10.754
MA0069.10.474
MA0070.10.401
MA0071.10.891
MA0072.10.56
MA0073.10.94
MA0074.10.62
MA0076.10.845
MA0077.10.524
MA0078.10.472
MA0079.20.236
MA0080.20.00256
MA0081.10.357
MA0083.12.53219e-4
MA0084.10.514
MA0087.10.639
MA0088.10.372
MA0090.10.00867
MA0091.10.0468
MA0092.10.139
MA0093.10.523
MA0099.24.50476e-17
MA0100.10.199
MA0101.10.732
MA0102.20.845
MA0103.10.0123
MA0104.20.0887
MA0105.10.956
MA0106.10.102
MA0107.10.63
MA0108.27.79023e-8
MA0111.10.0128
MA0112.20.506
MA0113.10.635
MA0114.10.721
MA0115.10.596
MA0116.10.402
MA0117.10.597
MA0119.10.206
MA0122.10.299
MA0124.10.656
MA0125.10.522
MA0131.10.823
MA0135.10.38
MA0136.10.117
MA0137.20.634
MA0138.20.217
MA0139.10.822
MA0140.10.736
MA0141.10.918
MA0142.10.335
MA0143.10.922
MA0144.10.661
MA0145.10.107
MA0146.10.382
MA0147.10.35
MA0148.10.118
MA0149.10.583
MA0150.10.0316
MA0152.10.558
MA0153.10.711
MA0154.10.968
MA0155.10.198
MA0156.10.818
MA0157.10.657
MA0159.10.998
MA0160.10.584
MA0162.10.168
MA0163.10.25
MA0164.10.991
MA0258.10.731
MA0259.10.743



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11309

Novel motifP-value
10.489
100.0584
1000.241
1010.111
1020.955
1030.914
1040.488
1050.316
1060.212
1070.265
1080.845
1090.295
110.141
1100.646
1110.119
1120.685
1130.0502
1140.994
1150.664
1160.0305
1170.575
1180.188
1190.832
120.813
1200.511
1210.581
1220.6
1230.0225
1240.741
1250.702
1260.808
1270.57
1280.658
1290.815
130.109
1300.0191
1310.0544
1320.777
1330.609
1340.185
1350.416
1360.66
1370.809
1380.355
1390.353
140.374
1400.201
1410.0133
1420.76
1430.0203
1440.853
1450.121
1460.0722
1470.665
1480.532
1490.55
150.742
1500.515
1510.799
1520.0174
1530.942
1540.85
1550.0739
1560.591
1570.748
1580.0398
1590.553
160.438
1600.591
1610.415
1620.88
1630.721
1640.911
1650.396
1660.709
1670.429
1680.631
1690.278
170.239
180.152
190.442
20.775
200.157
210.776
220.178
230.0267
240.174
250.409
260.279
270.978
280.147
290.993
30.758
300.0509
310.991
320.31
330.975
340.52
350.456
360.316
370.732
380.65
390.44
40.934
400.908
410.664
420.821
430.392
440.432
450.239
460.394
470.94
480.547
490.841
50.888
500.263
510.776
520.325
530.232
540.959
550.513
560.886
570.844
580.46
590.36
60.655
600.889
610.659
620.66
630.434
640.498
650.215
660.109
670.444
680.683
690.228
70.509
700.811
710.646
720.441
730.00273
740.468
750.985
760.943
770.188
780.256
790.862
80.632
800.794
810.486
820.959
830.893
840.581
850.586
860.651
870.0951
880.378
890.501
90.13
900.608
910.462
920.89
930.981
940.416
950.873
960.987
970.309
980.272
990.0267



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11309


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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